HHsearch alignment for GI: 254780432 and conserved domain: cd06452
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.37 E-value=2.3e-11 Score=94.73 Aligned_cols=314 Identities=15% Similarity=0.199 Sum_probs=182.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCC------CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 878999999999999731450------68757818999998652010133312356555403567776654320013478
Q gi|254780432|r 47 GHSHPELVAILKSQSEKLWHV------SNLYQSTQQEIFANHLIHSTFADRVFFTNSGAESVECAIKTARRYHYMAGKTN 120 (392)
Q Consensus 47 Gh~~p~i~~a~~~q~~~~~~~------~~~~~~~~~~~la~~L~~~~~~~~v~f~~SGseA~e~Aiklar~~~~~~g~t~ 120 (392)
T Consensus 11 g~l~~~a~~a~~~~gdgysvcd~c~~~ld~~~~P~i~efe~~aAeflG~d~A~~V~Ggt~Gnqa~i~t~-------c~~G 83 (361)
T cd06452 11 GRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSL-------CEKG 83 (361)
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH-------HCCC
T ss_conf 968999999999867864714520565334769988999999998719966999468520899999998-------4799
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHH----HHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6002343546565432123455321-13479998643332221002----688754101233222233322221124621
Q gi|254780432|r 121 KFRIVTFEGAFHGRTLATISAGGKL-QYLEGFGPKIEGFDQAKFCD----LQSLKNQISNDTAAILIEPIQGEGGVRKVP 195 (392)
Q Consensus 121 r~~ii~~~~~yHG~t~~a~s~s~~~-~~~~~~~p~~~~~~~~~~~d----~~~l~~~~~~~iAavi~Epv~g~~G~~~~~ 195 (392)
T Consensus 84 -D~VIv-~~naH~S~~~a~~laG~~~~~v~~~-~~-~~~-~i~pe~~~~~Iee~~~e~g~~p~Lilit~~dy~yG~~~d- 157 (361)
T cd06452 84 -DWVVV-DGLAHYTSYVAAERAGLNVREVPNT-GH-PEY-HITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD- 157 (361)
T ss_pred -CEEEE-CCCCHHHHHHHHHHCCCEEEEECCC-CC-CCC-CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC-
T ss_conf -88985-5751288998888638469995677-68-566-518899999999999861899649999667877366313-
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEE--ECCCCCCCCCCCCCCCCCCCCCCC-CCC----
Q ss_conf 0123221102234572131011003444455531011124545302--103444444344321000111222-223----
Q gi|254780432|r 196 EEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDIM--TIAKGMGGGFPIGACLATNEVAAC-MNQ---- 268 (392)
Q Consensus 196 ~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~e~~gi~PDi~--~~gK~l~gG~P~sav~~~~~i~~~-~~~---- 268 (392)
T Consensus 158 ---l~~I~~iah~y~iPvlvD~A~~-~g~----lpv~a~~~gaD~v~~s~hK~~~a~~p~gvL~~~~~~~~~v~R~~~~~ 229 (361)
T cd06452 158 ---AKKIAKVCHEYGVPLLLNGAYT-VGR----MPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMF 229 (361)
T ss_pred ---HHHHHHHHHHCCCCEEECCCCC-CCC----CCCCHHHCCCCEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHCCCC
T ss_conf ---7999999998599689715422-475----79875450796899865655534574378850506788887411011
Q ss_pred -----CCCCCCCCCCCC-CHHHHH-HHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEEEC---
Q ss_conf -----322345321111-001233-4554320122210112100002688999988679707550464009998724---
Q gi|254780432|r 269 -----GSHGSTYGGNVL-AMVLGE-KVLNIIQSDGFLENVINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTV--- 338 (392)
Q Consensus 269 -----~~~~~T~~gnpl-~~aaa~-a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~v~~vRG~Gl~~~ie~~--- 338 (392)
T Consensus 230 ~~K~~~~Lg~t~~~~~~~~lmAS~~~~~~~v~~--~-~eev~~ar~~~~el~kI~G~~-~~ge~p~~~dl~~-~dt~~~~ 304 (361)
T cd06452 230 KIKEVELLGCTLRGAPLVTLMASFPHVKERVKR--W-DEEVEKARWFVAELEKIEGIK-QLGEKPKNHDLMF-FETPSFD 304 (361)
T ss_pred HHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHH--H-HHHHHHHHHHHHHHHCCCCHH-HCCCCCCCCCCEE-ECCCCCE
T ss_conf 045778746786551799998072999999987--7-789999999999984284531-2155777677456-1478632
Q ss_pred -------CCHHHHHHHHHHCCEEEE-ECCCCEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf -------998999999996898996-2689889955898688999999999999999
Q gi|254780432|r 339 -------FSPALLAAKFRDECLLTA-PSSDNVVRILPPLTITAEEIHEGLERIERTA 387 (392)
Q Consensus 339 -------~~~~~~~~~l~~~Gll~~-~~~~~~irl~Ppl~it~~eid~~i~~l~~al 387 (392)
T Consensus 305 ~~~~~~~~~G~~L~~~L~~rgI~~~~~g~t~~~~~~-tyG~t~e~i~~l~~a~keI~ 360 (361)
T cd06452 305 EIAKKHKRRGYFLYSELKKRGIHGIKPGLTRYFKLS-TYGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred EEEECCCCCCCHHHHHHHHCCCEEECCCCCCEEEEE-EECCCHHHHHHHHHHHHHHH
T ss_conf 441047865006999998769768716853379999-95168889999999999975