HHsearch alignment for GI: 254780432 and conserved domain: pfam03841

>pfam03841 SelA L-seryl-tRNA selenium transferase.
Probab=98.50  E-value=1.1e-06  Score=64.08  Aligned_cols=231  Identities=16%  Similarity=0.194  Sum_probs=140.0

Q ss_pred             HCCCCC--CHHHHHHHHHHHHHCCCCC----CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             357878--9999999999997314506----8757818999998652010133312356555403567776654320013
Q gi|254780432|r   44 NSLGHS--HPELVAILKSQSEKLWHVS----NLYQSTQQEIFANHLIHSTFADRVFFTNSGAESVECAIKTARRYHYMAG  117 (392)
Q Consensus        44 ~~lGh~--~p~i~~a~~~q~~~~~~~~----~~~~~~~~~~la~~L~~~~~~~~v~f~~SGseA~e~Aiklar~~~~~~g  117 (392)
T Consensus        11 TnLGRa~l~~~a~~a~~~~~~~y~nLE~dl~~g~RG~R~~~~~~ll~~ltgaE~a~vVNnnAaAv~L~l~~l--------   82 (367)
T pfam03841        11 TNLGRALLSEEAVEAAKEAARHYSNLEYDLESGKRGSRDSHLEELLCELTGAEDALVVNNNAAAVLLVLNTL--------   82 (367)
T ss_pred             CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH--------
T ss_conf             678777899999999999861772036667417766357899999998639865999878389999999987--------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC-CCC-CCCCCCCCCC
Q ss_conf             47860023435465654321234553211347999864333222100268875410123322223-332-2221124621
Q gi|254780432|r  118 KTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILI-EPI-QGEGGVRKVP  195 (392)
Q Consensus       118 ~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~~~~~iAavi~-Epv-~g~~G~~~~~  195 (392)
T Consensus        83 a~g~evivSRGelVe--iGgsfRi---Pdim~~sGa~LvEVGtTNrT~l~DYe~AI~e~Ta~llkVH~SN~~i~GFt~~v  157 (367)
T pfam03841        83 AQGKEVIISRGELVE--IGGSFRI---PDIMKQSGARLVEVGTTNRTHLKDYEQAINENTALLMKVHTSNYRIQGFTKEV  157 (367)
T ss_pred             HCCCCEEEECCEEEC--CCCCCCC---HHHHHHCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCCCEECCCCCCC
T ss_conf             548905775554512--3875440---89999659789982566888989999870824618999942651223746779


Q ss_pred             HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC------------CCCEEECC--CCCCCCCCCCCCCCCCC
Q ss_conf             01232211022345721310110034444555310111245------------45302103--44444434432100011
Q gi|254780432|r  196 EEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANV------------KPDIMTIA--KGMGGGFPIGACLATNE  261 (392)
Q Consensus       196 ~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~e~~gi------------~PDi~~~g--K~l~gG~P~sav~~~~~  261 (392)
T Consensus       158 ~--~~el~~la~~~~ip~i~Dl-----G-SG~l~d~~~~gl~~Ep~v~~~l~~GaDlV~FSGDKLLG-GPQAGII~Gkk~  228 (367)
T pfam03841       158 S--LAELVALGKEHGLPVYYDL-----G-SGSLVDLSQYGLPKEPTVQELLALGVDLVSFSGDKLLG-GPQAGIIVGKKE  228 (367)
T ss_pred             C--HHHHHHHHHHCCCCEEEEC-----C-CCCEECCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCC-CCCCCEEEECHH
T ss_conf             9--9999999987699679975-----8-66311220017999998999997399889986764568-985324764599


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             12222233223453211110012334554320122
Q gi|254780432|r  262 VAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDG  296 (392)
Q Consensus       262 i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~  296 (392)
T Consensus       229 lI~~ikknPL~RAlRvDKltLaaLeatL~~Yl~~~  263 (367)
T pfam03841       229 LIERLKKNPLKRALRVDKLTLAALEATLRLYLNPE  263 (367)
T ss_pred             HHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf             99974647444544458899999999999984900