HHsearch alignment for GI: 254780432 and conserved domain: pfam03841
>pfam03841 SelA L-seryl-tRNA selenium transferase.
Probab=98.50 E-value=1.1e-06 Score=64.08 Aligned_cols=231 Identities=16% Similarity=0.194 Sum_probs=140.0
Q ss_pred HCCCCC--CHHHHHHHHHHHHHCCCCC----CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 357878--9999999999997314506----8757818999998652010133312356555403567776654320013
Q gi|254780432|r 44 NSLGHS--HPELVAILKSQSEKLWHVS----NLYQSTQQEIFANHLIHSTFADRVFFTNSGAESVECAIKTARRYHYMAG 117 (392)
Q Consensus 44 ~~lGh~--~p~i~~a~~~q~~~~~~~~----~~~~~~~~~~la~~L~~~~~~~~v~f~~SGseA~e~Aiklar~~~~~~g 117 (392)
T Consensus 11 TnLGRa~l~~~a~~a~~~~~~~y~nLE~dl~~g~RG~R~~~~~~ll~~ltgaE~a~vVNnnAaAv~L~l~~l-------- 82 (367)
T pfam03841 11 TNLGRALLSEEAVEAAKEAARHYSNLEYDLESGKRGSRDSHLEELLCELTGAEDALVVNNNAAAVLLVLNTL-------- 82 (367)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH--------
T ss_conf 678777899999999999861772036667417766357899999998639865999878389999999987--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC-CCC-CCCCCCCCCC
Q ss_conf 47860023435465654321234553211347999864333222100268875410123322223-332-2221124621
Q gi|254780432|r 118 KTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILI-EPI-QGEGGVRKVP 195 (392)
Q Consensus 118 ~t~r~~ii~~~~~yHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~~~~~iAavi~-Epv-~g~~G~~~~~ 195 (392)
T Consensus 83 a~g~evivSRGelVe--iGgsfRi---Pdim~~sGa~LvEVGtTNrT~l~DYe~AI~e~Ta~llkVH~SN~~i~GFt~~v 157 (367)
T pfam03841 83 AQGKEVIISRGELVE--IGGSFRI---PDIMKQSGARLVEVGTTNRTHLKDYEQAINENTALLMKVHTSNYRIQGFTKEV 157 (367)
T ss_pred HCCCCEEEECCEEEC--CCCCCCC---HHHHHHCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCCCEECCCCCCC
T ss_conf 548905775554512--3875440---89999659789982566888989999870824618999942651223746779
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC------------CCCEEECC--CCCCCCCCCCCCCCCCC
Q ss_conf 01232211022345721310110034444555310111245------------45302103--44444434432100011
Q gi|254780432|r 196 EEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANV------------KPDIMTIA--KGMGGGFPIGACLATNE 261 (392)
Q Consensus 196 ~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~f~~e~~gi------------~PDi~~~g--K~l~gG~P~sav~~~~~ 261 (392)
T Consensus 158 ~--~~el~~la~~~~ip~i~Dl-----G-SG~l~d~~~~gl~~Ep~v~~~l~~GaDlV~FSGDKLLG-GPQAGII~Gkk~ 228 (367)
T pfam03841 158 S--LAELVALGKEHGLPVYYDL-----G-SGSLVDLSQYGLPKEPTVQELLALGVDLVSFSGDKLLG-GPQAGIIVGKKE 228 (367)
T ss_pred C--HHHHHHHHHHCCCCEEEEC-----C-CCCEECCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCC-CCCCCEEEECHH
T ss_conf 9--9999999987699679975-----8-66311220017999998999997399889986764568-985324764599
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 12222233223453211110012334554320122
Q gi|254780432|r 262 VAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDG 296 (392)
Q Consensus 262 i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~ 296 (392)
T Consensus 229 lI~~ikknPL~RAlRvDKltLaaLeatL~~Yl~~~ 263 (367)
T pfam03841 229 LIERLKKNPLKRALRVDKLTLAALEATLRLYLNPE 263 (367)
T ss_pred HHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99974647444544458899999999999984900