RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780432|ref|YP_003064845.1| acetylornithine transaminase
protein [Candidatus Liberibacter asiaticus str. psy62]
(392 letters)
>gnl|CDD|34597 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino
acid transport and metabolism].
Length = 404
Score = 490 bits (1264), Expect = e-139
Identities = 196/392 (50%), Positives = 260/392 (66%), Gaps = 7/392 (1%)
Query: 3 KNDFLFNTYDQSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSE 62
+L TY + + +G+GA+++ + G +LDFA+GIAVN+LGH HP LV LK Q+E
Sbjct: 13 FMKYLMPTYGRLPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAE 72
Query: 63 KLWHVSNLYQSTQQEIFANHLI-HSTFADRVFFTNSGAESVECAIKTARRYHYMAGKTNK 121
KLWHVSNL+ + Q A L+ S FADRVFF NSGAE+ E A+K AR+Y G K
Sbjct: 73 KLWHVSNLFYNEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKY---TGDPEK 129
Query: 122 FRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAIL 181
+I+ FE +FHGRTL +SA G+ +Y +GFGP + GF F D+++L+ I DTAA++
Sbjct: 130 SKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDEDTAAVI 189
Query: 182 IEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDIM 241
+EPIQGEGGV P EFL+ LR++CD+ ALLI DEVQTG GRTGKLFAYE V+PDI+
Sbjct: 190 VEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDIL 249
Query: 242 TIAKGMGGGFPIGACLATNEVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLENV 301
T+AK +GGGFPIGA LAT E+A+ G HGST+GGN LA + VL ++ +G LENV
Sbjct: 250 TLAKALGGGFPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENV 309
Query: 302 INIAKILFEGLTAIKNRFPNMFLEVRGQGLLIG--LKTVFSPALLAAKFRDECLLTAPSS 359
+ L + L +K R+P + EVRG+GL+IG LK + + R+E +L P+
Sbjct: 310 REKGEYLLQRLRELKRRYP-LVKEVRGRGLMIGIELKEPYRARDIVRALREEGVLVLPAG 368
Query: 360 DNVVRILPPLTITAEEIHEGLERIERTAIKLS 391
NV+R LPPL IT EEI E L+ +ER S
Sbjct: 369 PNVIRFLPPLVITEEEIDEALDALERALAAAS 400
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation..
Length = 413
Score = 408 bits (1050), Expect = e-114
Identities = 163/398 (40%), Positives = 228/398 (57%), Gaps = 36/398 (9%)
Query: 18 FEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNLYQSTQQE 77
+ +GA+L+ +G +LDF SGI V +LGH+HPE+V LK Q KL H S + +
Sbjct: 22 IVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPA 81
Query: 78 I-FANHLIHST--FADRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGR 134
+ A L+ T D+VFF NSG E+VE A+K AR Y T + +I++FEGA+HGR
Sbjct: 82 VELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAY------TGRKKIISFEGAYHGR 135
Query: 135 TLATISAGGKLQYLEGFGPKIEGFDQAKFC-----------DLQSLKNQI---SNDTAAI 180
TL +S G +Y GFGP + G + DL++L+ + + AA+
Sbjct: 136 TLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAV 195
Query: 181 LIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDI 240
++EPIQGEGGV P +L+ LR++C LLI DEVQTG+GRTGK+FA+E V+PDI
Sbjct: 196 IVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDI 255
Query: 241 MTIAKGMGGGFPIGACLATNEVAACMNQ--GSHGSTYGGNVLAMVLGEKVLNIIQSDGFL 298
+T+ KG+GGG P+GA L E+ G HG T+GGN LA VL +++ +G L
Sbjct: 256 VTLGKGLGGGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLL 315
Query: 299 ENVINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGL------KTVFSPALLAAKFRDEC 352
EN + + L E L + + P + +VRG+GL+IG+ T LAAK
Sbjct: 316 ENAAELGEYLRERLRELAEKHPLV-GDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAA 374
Query: 353 ----LLTAPSSDNVVRILPPLTITAEEIHEGLERIERT 386
LL PS NV+R+LPPL IT EEI EGL+ ++
Sbjct: 375 LERGLLLRPSGGNVIRLLPPLIITEEEIDEGLDALDEA 412
>gnl|CDD|143959 pfam00202, Aminotran_3, Aminotransferase class-III.
Length = 338
Score = 347 bits (892), Expect = 4e-96
Identities = 147/337 (43%), Positives = 197/337 (58%), Gaps = 19/337 (5%)
Query: 19 EKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVS-NLYQSTQQE 77
K KG WL+ +G +LDF SGIAV +LGH HP++V +K Q++KL H S + +
Sbjct: 3 TKAKGVWLYDVDGRRYLDFLSGIAVVNLGHCHPKIVQAVKEQADKLTHTSFRAFTTEPAL 62
Query: 78 IFANHLIHST--FADRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRT 135
A L T DRVFF NSG+E+ E AIK AR+Y G T K +I+ F G FHGRT
Sbjct: 63 QLAEKLAQLTPGGLDRVFFMNSGSEANETAIKLARQYAKKKGATGKTKIIAFSGGFHGRT 122
Query: 136 LATISAGGKLQYLEGFGPKIEGFDQAKFCDL--------------QSLKNQISNDTAAIL 181
L +S G Y +GFGP + G + DL + +K ++ AA++
Sbjct: 123 LGALSVTGSSGYKKGFGPSLPGVYFLPYPDLEAAEEELACADEALRLIKAVHDDNIAAVI 182
Query: 182 IEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDIM 241
+EPIQGEGGV P FL LR+IC LLI DEVQTG+GRTGKLFA E V PDIM
Sbjct: 183 VEPIQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLFACEHYGVTPDIM 242
Query: 242 TIAKGMGGGFPIGACLATNEVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLENV 301
T+AK + GG P+ A LAT E+ + GSHG T+GGN LA VL+II+ + L+N
Sbjct: 243 TLAKALTGGLPLSAVLATAEIMQAFHPGSHGGTFGGNPLACAAALAVLDIIEDENLLQNA 302
Query: 302 INIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTV 338
L +GL A++++ + +VRG+GL+I ++ V
Sbjct: 303 QEKGDYLRKGLLALQDK--PVIGDVRGRGLMIAIEIV 337
>gnl|CDD|30509 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 332 bits (852), Expect = 1e-91
Identities = 156/408 (38%), Positives = 220/408 (53%), Gaps = 48/408 (11%)
Query: 18 FEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNLYQSTQQE 77
+ +GA+L+ +G +LDF SGIAV +LGH+HP +V +K Q KL H +
Sbjct: 42 IVRAEGAYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPY 101
Query: 78 I-FANHLIHST---FADRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHG 133
+ A L +VFF NSGAE+VE AIK AR Y T + ++ F+GAFHG
Sbjct: 102 VELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAY------TGRPGVIAFDGAFHG 155
Query: 134 RTLATISAGGKL-QYLEGFGPKIEGFDQAKFCD-----------------LQSLKNQI-- 173
RTL +S G Y GFGP G + + L+ ++ +
Sbjct: 156 RTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFD 215
Query: 174 ----SNDTAAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLF 229
+ AAI+IEPIQGEGG+ P+ FL+ LRK+C + LLI DEVQTG+GRTGK+F
Sbjct: 216 LEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMF 275
Query: 230 AYEWANVKPDIMTIAKGMGGGFPIGACLATNEVAACMNQGSHGSTYGGNVLAMVLGEKVL 289
A+E V+PDI+T+AK +GGG P+ A + E+ G HG T+GGN +A VL
Sbjct: 276 AFEHFGVEPDIVTLAKSLGGGLPLSAVVGRAEIMDWPP-GGHGGTFGGNPVACAAALAVL 334
Query: 290 NIIQSDGFLENVINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTVFSPAL------ 343
++I+ + LE + + L + L ++ + P + +VRG GL+IG++ V
Sbjct: 335 DVIEEENLLERAAELGEYLRDRLEELQEKHP-LIGDVRGLGLMIGVELVKDRDTKEPDAE 393
Query: 344 LAAKFRDEC------LLTAPSSDNVVRILPPLTITAEEIHEGLERIER 385
LAAK LLT NV+RILPPLTI+ EE+ EGL+ +E
Sbjct: 394 LAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEE 441
>gnl|CDD|36615 KOG1401, KOG1401, KOG1401, Acetylornithine aminotransferase [Amino
acid transport and metabolism].
Length = 433
Score = 284 bits (729), Expect = 2e-77
Identities = 146/398 (36%), Positives = 205/398 (51%), Gaps = 17/398 (4%)
Query: 6 FLFNTYDQSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLW 65
+ +TY + + E GKG+ LF +G ++DF S AV LGH++PE+ L Q++KL
Sbjct: 30 RIVSTYARYPVVIESGKGSKLFDPDGKEYIDFTSSWAVTILGHANPEVARALAEQAKKLG 89
Query: 66 HVSNLYQSTQQEIFANHLIHST---FADRVFFTNSGAESVECAIKTARRYHYMAGKTNKF 122
H SN Y + + L A+RVFF NSG E+ E A+K AR++ K
Sbjct: 90 HSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKT 149
Query: 123 RIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQI---SNDTAA 179
+ + FE ++HGRTL +S G +Y F P A++ D +L+ + AA
Sbjct: 150 KFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIAA 209
Query: 180 ILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPD 239
+++EPIQG GG+ EFL LRK CDD LLIFDEVQTG GR G +A E+ V PD
Sbjct: 210 VIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPD 269
Query: 240 IMTIAKGMGGGFPIGACLATNEVAACMNQGS---HGSTYGGNVLAMVLGEKVLNIIQSDG 296
I T+AK +GGG PIGA ++VA ++ G HG T+ GN LA G KVL+ ++
Sbjct: 270 ITTVAKPLGGGLPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPE 329
Query: 297 FLENVINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTVFSPALLAAKFRDECLLTA 356
L+NV I K L + L + PN G+GL+IG + A R++ LL
Sbjct: 330 TLKNVSKIGKELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEGPVYKFADAAREQGLLIL 389
Query: 357 P----SSDNVVRILPPLTI----TAEEIHEGLERIERT 386
+ VRI P + T E I L +E+
Sbjct: 390 TLGKGLLEEGVRIAPIYLLTVEHTPEVIQRLLTILEKV 427
>gnl|CDD|36616 KOG1402, KOG1402, KOG1402, Ornithine aminotransferase [Amino acid
transport and metabolism].
Length = 427
Score = 284 bits (728), Expect = 3e-77
Identities = 140/396 (35%), Positives = 220/396 (55%), Gaps = 13/396 (3%)
Query: 3 KNDFLFNTYDQSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSE 62
+N + + Y + F K KG+ ++ G +LDF S + + GH HP+++ L+ Q++
Sbjct: 30 ENKYGAHNYHPLPVVFSKAKGSRVWDPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQAD 89
Query: 63 KLWHVSNLYQSTQQEIFANHLIHSTFADRVFFTNSGAESVECAIKTARRYHYMAGK--TN 120
KL S + + FA ++ D+V N+GAE+VE A K AR++ Y N
Sbjct: 90 KLTLSSRAFYNDVLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKN 149
Query: 121 KFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEG-FDQAKFCDLQSLKNQISNDT-A 178
K +I++ E FHGRTL IS +GFGP + G D+ + D ++L+ + + A
Sbjct: 150 KAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYGDAEALEVALKSPNVA 209
Query: 179 AILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKP 238
A ++EPIQGE GV P +L+++R++C + LLI DEVQTG RTGKL A ++ NV+P
Sbjct: 210 AFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRP 269
Query: 239 DIMTIAKGMGGGF-PIGACLATNEVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGF 297
DI+ + K + GG P+ A LA +++ + G HGSTYGGN L + L +I +
Sbjct: 270 DIVILGKALSGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEEKL 329
Query: 298 LENVINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTVFSPALLAAKFRDECL---- 353
+E + +IL + L ++ +FP++ EVRG+GLL + S + D CL
Sbjct: 330 VERAAKLGEILRDQLNKLQKKFPHVVKEVRGRGLLNAIVINPSKTSGQDAW-DVCLALKE 388
Query: 354 ---LTAPSSDNVVRILPPLTITAEEIHEGLERIERT 386
L P+ N++R PPL I+ E++ EG+E IE+T
Sbjct: 389 NGLLAKPTHGNIIRFAPPLVISEEDLREGIEAIEKT 424
>gnl|CDD|30510 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase [Coenzyme metabolism].
Length = 449
Score = 276 bits (707), Expect = 9e-75
Identities = 129/420 (30%), Positives = 192/420 (45%), Gaps = 46/420 (10%)
Query: 11 YDQSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNL 70
+ +G +L +G +LD SG+ + GH PE+ +K Q +KL HV
Sbjct: 23 PLAEPRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFG 82
Query: 71 YQSTQQEI-FANHLIHSTFA---DRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVT 126
+ + I A L D VFFT+SG+E+VE A+K A +Y G+ + + ++
Sbjct: 83 GFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFIS 142
Query: 127 FEGAFHGRTLATISAGG-KLQYLEGFGPKIEGFDQAKFC-----------------DLQS 168
+HG TL +S GG + P +
Sbjct: 143 RRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADE 202
Query: 169 LKNQI----SNDTAAILIEPI-QGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYG 223
L+ I AA ++EP+ G GG+ P +L+++R+ICD LLI DEV TG+G
Sbjct: 203 LEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFG 262
Query: 224 RTGKLFAYEWANVKPDIMTIAKGMGGGF-PIGACLATNEVAACMNQG-----SHGSTYGG 277
RTGK+FA E A + PDI+ +AKG+ GG+ P+ A L ++ + + G HG TY G
Sbjct: 263 RTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSG 322
Query: 278 NVLAMVLGEKVLNIIQSDGFLENVINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGL-- 335
N LA L+I++ + LE V I L GL A P +VRG GL+ +
Sbjct: 323 NPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPL-VGDVRGLGLIGAIEL 381
Query: 336 ------KTVFS---PALLAAKFRDECLLTAPSSDNVVRILPPLTITAEEIHEGLERIERT 386
KT F A + A + LL P D + ++PPL IT EEI E ++ +
Sbjct: 382 VADKATKTPFEARVGARVRAAALERGLLIRPLGDVIY-LMPPLIITREEIDELVDALREA 440
>gnl|CDD|36618 KOG1404, KOG1404, KOG1404, Alanine-glyoxylate aminotransferase AGT2
[Amino acid transport and metabolism].
Length = 442
Score = 262 bits (670), Expect = 1e-70
Identities = 140/407 (34%), Positives = 209/407 (51%), Gaps = 47/407 (11%)
Query: 10 TYDQSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSN 69
+Y + + +G+G +L+ E G +LD GI SLGH HP++VA Q +KL+H ++
Sbjct: 28 SYYKKPLVIVRGEGQYLYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTTS 87
Query: 70 LYQSTQQEIFANHLIHSTFAD---RVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVT 126
Y + A L+ S VFF NSG+E+ E A+K AR Y T I+
Sbjct: 88 GYLNPPIHDLAEALV-SKLPGDLKVVFFVNSGSEANELALKMARLY------TGNLDIIA 140
Query: 127 FEGAFHGRTLATISAGG---KLQYLEGFGPKI-------------EGFDQAKFCDLQS-- 168
++HG TL T+ G Q G + G ++ + D +
Sbjct: 141 RRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKE 200
Query: 169 LKNQISNDT----AAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGR 224
L++ I D AA + E IQG GG+ ++P +L+ K+ L I DEVQTG+GR
Sbjct: 201 LEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGR 260
Query: 225 TGKLFAYEWANVKPDIMTIAKGMGGGFPIGACLATNEVAACMNQ-GSHGSTYGGNVLAMV 283
TG ++ +E V PDI+T+AKG+G GFP+GA + T E+A +NQ SH +TYGGN +A
Sbjct: 261 TGHMWGFESHGVVPDIVTMAKGIGNGFPLGAVVTTPEIADVLNQKSSHFNTYGGNPVACA 320
Query: 284 LGEKVLNIIQSDGFLENVINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTV----- 338
+G VL +I+ + EN + L E L A+K++ P + +VRG+GL++G++ V
Sbjct: 321 VGLAVLKVIKEENLQENAAEVGSYLLEKLAALKDKHPII-GDVRGRGLMLGVELVSDKSE 379
Query: 339 -FSPA-LLAAKFRDEC----LLTAPSS--DNVVRILPPLTITAEEIH 377
PA A ++C +L NV RI PPL IT E+I
Sbjct: 380 PKPPATAEGAVIGEQCKELGVLVGKGGIHGNVFRIAPPLCITKEDID 426
>gnl|CDD|30350 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme
metabolism].
Length = 432
Score = 168 bits (426), Expect = 3e-42
Identities = 103/327 (31%), Positives = 158/327 (48%), Gaps = 32/327 (9%)
Query: 8 FNTYDQSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHV 67
F + I E+GKGA+L +G ++D+ G LGH+HP +V ++ Q E+
Sbjct: 29 FKSVGGYPIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERGLSF 88
Query: 68 SNLYQSTQQEIFANHLIHSTF--ADRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIV 125
T+ E+ L+ ++V F NSG E+ AI+ AR Y T + +I+
Sbjct: 89 GA---PTELEVELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAY------TGRDKII 139
Query: 126 TFEGAFHGRTLAT-ISAGGKLQYLEGFGPKIEGFDQAK------FCDLQSLK---NQISN 175
FEG +HG + + + AG L D AK + DL++L+ + +
Sbjct: 140 KFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGD 199
Query: 176 DTAAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWAN 235
D AA+++EP+ G GV FL+ LR++ ++ ALLIFDEV TG+ R A +
Sbjct: 200 DIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGF-RVALGGAQGYYG 258
Query: 236 VKPDIMTIAKGMGGGFPIGACLATNEVAACMNQGS------HGSTYGGNVLAMVLGEKVL 289
V+PD+ T+ K +GGG PIGA E+ M Q + T GN LAM G L
Sbjct: 259 VEPDLTTLGKIIGGGLPIGAFGGRAEI---MEQLAPLGPVYQAGTLSGNPLAMAAGLATL 315
Query: 290 NIIQS-DGFLENVINIAKILFEGLTAI 315
+ + +G E + + + L EGL A
Sbjct: 316 EELMTEEGVYERLDALGERLAEGLRAA 342
>gnl|CDD|36619 KOG1405, KOG1405, KOG1405, 4-aminobutyrate aminotransferase [Amino
acid transport and metabolism].
Length = 484
Score = 142 bits (360), Expect = 1e-34
Identities = 105/426 (24%), Positives = 171/426 (40%), Gaps = 64/426 (15%)
Query: 18 FEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSN-LYQSTQQ 76
+EK G +L +G LD S I+ LG+++P LV + V+ +
Sbjct: 62 YEKSIGNYLVDVDGNRLLDVYSQISSVPLGYNNPALVKAAQQPQNATMLVNRPALGNFPP 121
Query: 77 EIFANHLIHSTFA------DRVFFTNSGAESVECAIKTARRYHY---------------- 114
+ FA L S + +V G+ + E A KTA ++
Sbjct: 122 KDFAEKLRQSLLSIAPKGQKQVITMLCGSCANENAYKTAFIWYRAKERGQAGFSAEELES 181
Query: 115 ----MAGKTNKFRIVTFEGAFHGRTLATISAG--------------------GKLQY-LE 149
A +++F+GAFHGRT ++S + +Y L+
Sbjct: 182 CMINQAPGAPDLSVLSFKGAFHGRTFGSLSTTHSKPIHKLDIPAFDWPIAPFPRYKYPLD 241
Query: 150 GFGPKIEGFDQAKFCDLQSLKNQIS---NDTAAILIEPIQGEGGVRKVPEEFLQQLRKIC 206
+ + DQ +++ L + AAI++EPIQ EGG +F ++LR I
Sbjct: 242 ENVAENKKEDQGCLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDIT 301
Query: 207 DDIDALLIFDEVQTGYGRTGKLFAYEWANVK--PDIMTIAKGM-GGGFPIGACLATNEVA 263
I DEVQTG G TGK +A+E N+ PD++T +K GGF NE
Sbjct: 302 KKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFSKKFQTGGFFHDEEFRPNEPY 361
Query: 264 ACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLENVINIAKILFEGLTAIKNRFPNMF 323
N T+ G+ +L E+V+ I+ + L NV ++ K L +GL ++ ++P
Sbjct: 362 RIFN------TWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGLLELQAKYPGKI 415
Query: 324 LEVRGQGLLIGLKTVFSPAL---LAAKFRDECLLTAPSSDNVVRILPPLTITAEEIHEGL 380
+RG+G I S ++ L R + D +R P L L
Sbjct: 416 NNLRGRGTFIAWDCP-SGSIRDKLILIARLNGVNLGGCGDKSIRFRPSLVFRKHHADIFL 474
Query: 381 ERIERT 386
+ ++
Sbjct: 475 DIFDKI 480
>gnl|CDD|36617 KOG1403, KOG1403, KOG1403, Predicted alanine-glyoxylate
aminotransferase [General function prediction only].
Length = 452
Score = 140 bits (354), Expect = 6e-34
Identities = 99/420 (23%), Positives = 172/420 (40%), Gaps = 57/420 (13%)
Query: 11 YDQSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNL 70
Y ++ + +G ++F E G +LD + +A +GH HPE+V Q + +N
Sbjct: 26 YRSDPLKIVRAQGQYMFDEEGTRYLDCINNVA--HVGHCHPEVVRAGAKQMATI-STNNR 82
Query: 71 YQSTQQEIFANHLIHSTFA--DRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFE 128
+ + A L ST FF NSG+E+ + A++ AR + T ++T +
Sbjct: 83 FLHDELVQCARTLT-STLPELSVCFFVNSGSEANDLALRLARNF------TKHQDVITLD 135
Query: 129 GAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFC-------------DLQSLKNQISN 175
A+HG + + ++ +G G + C + ++
Sbjct: 136 HAYHGHLQSVMEVS-PYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYAD 194
Query: 176 DT--------------AAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTG 221
AA + E +Q GG P + Q + + I DEVQ G
Sbjct: 195 PVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVG 254
Query: 222 YGRTGKLF-AYEWANVKPDIMTIAKGMGGGFPIGACLATNEVAACMNQGSHG--STYGGN 278
+GR G + A++ N PDI+T+ K MG G P+ A T E+A + +TYGGN
Sbjct: 255 FGRVGSHYWAFQTYNFIPDIVTMGKPMGNGHPVAAVATTKEIAQAFHATGVEYFNTYGGN 314
Query: 279 VLAMVLGEKVLNIIQSDGFLENVINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTV 338
++ +G V+ + + + E+ + + L L +K + +VRG GL IG+ V
Sbjct: 315 PVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRRLKQKHE-CIGDVRGVGLFIGIDLV 373
Query: 339 -----FSPA-------LLAAKFRDECLLTAPS-SDNVVRILPPLTITAEEIHEGLERIER 385
+P + K LL+A N+++I PP+ E E + ++
Sbjct: 374 KDRKTRTPDTKEAHWVVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEFVLGLDE 433
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V)..
Length = 170
Score = 62.8 bits (153), Expect = 1e-10
Identities = 29/175 (16%), Positives = 50/175 (28%), Gaps = 29/175 (16%)
Query: 87 TFADRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGK-- 144
D+ F SG + E A+ ++ R G
Sbjct: 15 PGNDKAVFVPSGTGANEAALLALLGPGD--------EVIVDANGHGSRYWVAAELAGAKP 66
Query: 145 --LQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILIEPIQGEGGVRKVPEEFLQQL 202
+ + ++ + + + A I+I P GGV +E +
Sbjct: 67 VPVPVDDAGYGGLDV--------AILEELKAKPNVALIVITPNTTSGGVLVPLKE----I 114
Query: 203 RKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDIMTIA--KGMGGGFPIGA 255
RKI + LL+ D G D++T + K + GG G
Sbjct: 115 RKIAKEYGILLLVDAASAGGASPAPG--VLIPEGGADVVTFSLHKNL-GGEGGGV 166
>gnl|CDD|30785 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 43.8 bits (103), Expect = 8e-05
Identities = 63/272 (23%), Positives = 100/272 (36%), Gaps = 36/272 (13%)
Query: 137 ATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAI-LIEPIQGEGGVRKVP 195
A AGGK + + GF DL+ L+ I+ T AI L P G V
Sbjct: 129 AVKLAGGKPVPVP-LDEEENGF----KPDLEDLEAAITPKTKAIILNSPNNPTGAV--YS 181
Query: 196 EEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLF--AYEWANVKPDIMTI---AKGMG-G 249
+E L+ + ++ + D ++I DE+ G E A + +TI +K G
Sbjct: 182 KEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMT 241
Query: 250 GFPIGACLATN-EVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLENVINI---- 304
G+ IG + E+ A + + T A LN QSD +E +
Sbjct: 242 GWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRER 301
Query: 305 AKILFEGLTAIKNRFPNMFLEVRGQG---LLIGLKTVFSPALLAAKFRDEC-LLTAPSS- 359
+L E L I + + +G L + + A K +E + P S
Sbjct: 302 RDLLVEALNEI----GGLSVVKPPEGAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSG 357
Query: 360 ------DNVVRILPPLTITAEEIHEGLERIER 385
+ VR+ L + E + E L R+ R
Sbjct: 358 FGEPPGEGYVRL--SLATSEETLEEALRRLAR 387
>gnl|CDD|31301 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and
metabolism].
Length = 386
Score = 37.8 bits (88), Expect = 0.005
Identities = 63/274 (22%), Positives = 98/274 (35%), Gaps = 48/274 (17%)
Query: 90 DRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLE 149
+ + FT+ ES AIK A + A K E H L T +YLE
Sbjct: 62 EEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIE---HPAVLNT------CRYLE 112
Query: 150 GFGPKIE--GFDQAKFCDLQSLKNQISNDTAAILIEPIQGEGGVRKVPEEFLQQLRKICD 207
G ++ D DL+ L+ + DT + I E G + + ++ +IC
Sbjct: 113 RQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTI----QPIAEIGEICK 168
Query: 208 DIDALLIFDEVQTGYGRTGKLFAYEWANVKPDIMTI-AKGMGGGFPIGACLATNEV--AA 264
+ L D VQ GK+ + + D+++ A GG IGA V
Sbjct: 169 ERGILFHVDAVQA----VGKI-PIDLEELGVDLLSFSAHKFGGPKGIGALYVRPGVRLEP 223
Query: 265 CMNQGSH------GSTYGGNVLAMVLGEKVLNIIQS--DGFLENVINIAKILFEGLTAI- 315
++ G G+ NV +V K I + + + L +GL I
Sbjct: 224 LIHGGGQERGLRSGTE---NVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEII 280
Query: 316 ---------KNRFPNM----FLEVRGQGLLIGLK 336
+ R PN+ F V G+ LL+ L
Sbjct: 281 PDVYLNGDDEPRLPNILNFSFPGVEGESLLLALD 314
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein..
Length = 350
Score = 37.3 bits (87), Expect = 0.007
Identities = 56/328 (17%), Positives = 104/328 (31%), Gaps = 67/328 (20%)
Query: 89 ADRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYL 148
+ + TN E++ ++ G ++ + + G A AG ++ +
Sbjct: 59 PEEIVVTNGAQEALSLLLRALLN----PGDE----VLVPDPTYPGYEAAARLAGAEVVPV 110
Query: 149 EGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILIEPIQ---GEGGVRKVPEEFLQQLRKI 205
EG DL+ L+ + T + + G + EE L++L ++
Sbjct: 111 P---LDEEGGFLL---DLELLEAAKTPKTKLLYLNNPNNPTG----AVLSEEELEELAEL 160
Query: 206 CDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPD-----------IMTIAKGMG-GGFPI 253
L+I DE Y Y+ + + +K G G I
Sbjct: 161 AKKHGILIISDEA---YAE----LVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRI 213
Query: 254 GACLATNEVAACMNQGSHGSTYGG-NVLAMVLGEKVLNIIQSDGFLENVINIAK----IL 308
G +A E + T G + L+ L+ + LE + + L
Sbjct: 214 GYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALD--DGEEHLEELRERYRRRRDAL 271
Query: 309 FEGLTAIKNRFPNMFLEVRGQG---LLIGLKTVFSPALLAAKFRDECLLTAPSS------ 359
E L + + V+ G L + L L + ++ P S
Sbjct: 272 LEALKELGP-----LVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGG 326
Query: 360 DNVVRILPPLTITA--EEIHEGLERIER 385
+ VR+ + EE+ E LER+
Sbjct: 327 EGFVRL----SFATPEEELEEALERLAE 350
>gnl|CDD|31229 COG1026, COG1026, Predicted Zn-dependent peptidases,
insulinase-like [General function prediction only].
Length = 978
Score = 36.4 bits (84), Expect = 0.013
Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 22/170 (12%)
Query: 22 KGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNLYQSTQQEIFAN 81
GA NG+ + F ++ N + E+ L++ +K++ +NL + I
Sbjct: 686 AGALKELLNGLSQVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIAI---IGDI 742
Query: 82 HLIHSTFADRVF-FTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATIS 140
I + + F E + + ++ I+ A++ A
Sbjct: 743 DKILDLLENPLLKFLEHLLPGFELPTPPKNPHLDLISSLSEATIIPSPVAYN----ALAF 798
Query: 141 AGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILIEPIQGEGG 190
+ G L Y LQ L + + L I+ +GG
Sbjct: 799 SIGGLPYTHPDYAA-----------LQVLSEYLGSG---YLWNKIREKGG 834
>gnl|CDD|31207 COG1003, GcvP, Glycine cleavage system protein P
(pyridoxal-binding), C-terminal domain [Amino acid
transport and metabolism].
Length = 496
Score = 32.2 bits (73), Expect = 0.28
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 12/121 (9%)
Query: 96 NSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKI 155
N+GA+ + R YH G+ ++ I + HG A+ + G F +
Sbjct: 132 NAGAQGEYAGLLAIRAYHESRGEGHR-NICLIPDSAHGTNPASAAMAG-------FKVVV 183
Query: 156 EGFDQAKFCDLQSLKNQISNDTAAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIF 215
D+ DL L+ + ++ AA++I G V EE ++++ +I + + +
Sbjct: 184 VKCDENGNVDLDDLRAKAEDNLAALMITNPSTLG----VFEEDIREICEIVHEAGGQVYY 239
Query: 216 D 216
D
Sbjct: 240 D 240
>gnl|CDD|35478 KOG0257, KOG0257, KOG0257, Kynurenine aminotransferase, glutamine
transaminase K [Amino acid transport and metabolism].
Length = 420
Score = 31.8 bits (72), Expect = 0.29
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 124 IVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILI- 182
++ FE F + AGG ++ + D + L+++I+ T AI++
Sbjct: 120 VIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILN 179
Query: 183 EPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEV 218
P G V E L+++ ++C L+I DEV
Sbjct: 180 TPHNPTGKV--FSREELERIAELCKKHGLLVISDEV 213
>gnl|CDD|133410 cd04783, HTH_MerR1, Helix-Turn-Helix DNA binding domain of the
MerR1 transcription regulator. Helix-turn-helix (HTH)
transcription regulator MerR1. MerR1 transcription
regulators, such as Tn21 MerR and Tn501 MerR, mediate
response to mercury exposure in eubacteria. These
proteins are comprised of distinct domains that harbor
the regulatory (effector-binding) site and the active
(DNA-binding) site. Their conserved N-terminal domains
contain winged HTH motifs that mediate DNA binding,
while the C-terminal domains have three conserved
cysteines that define a mercury binding site. These
proteins share the N-terminal DNA binding domain with
other transcription regulators of the MerR superfamily
that promote transcription by reconfiguring the spacer
between the -35 and -10 promoter elements.
Length = 126
Score = 30.3 bits (69), Expect = 0.96
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 180 ILIEPIQGEGGVRKVPEEFLQQLRKI---------CDDIDALLIFDE 217
+L EP + EGG R+ PEE + +LR I D+I LL D+
Sbjct: 25 LLPEPPRPEGGYRRYPEETVTRLRFIKRAQELGFTLDEIAELLELDD 71
>gnl|CDD|99737 cd00613, GDC-P, Glycine cleavage system P-protein, alpha- and
beta-subunits. This family consists of Glycine cleavage
system P-proteins EC:1.4.4.2 from bacterial, mammalian
and plant sources. The P protein is part of the glycine
decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also
annotated as glycine cleavage system or glycine
synthase. GDC consists of four proteins P, H, L and T.
The reaction catalysed by this protein is: Glycine +
lipoylprotein <=> S-aminomethyldihydrolipoylprotein +
CO2. Alpha-beta-type dimers associate to form an
alpha(2)beta(2) tetramer, where the alpha- and
beta-subunits are structurally similar and appear to
have arisen by gene duplication and subsequent
divergence with a loss of one active site. The members
of this CD are widely dispersed among all three forms of
cellular life..
Length = 398
Score = 30.3 bits (69), Expect = 0.98
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 132 HGRTLATISAGGKLQYLEGFGPKIEGFDQAKF--CDLQSLKNQISNDTAAILIEPIQGEG 189
H A E G ++ + DL++LK ++S + AA++++ G
Sbjct: 118 HPTNPAVART-----RGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEVAALMVQYPNTLG 172
Query: 190 GVRKVPEEFLQQLRKICDDIDALLIFD 216
E+ ++++ I AL+ D
Sbjct: 173 VF----EDLIKEIADIAHSAGALVYVD 195
>gnl|CDD|32191 COG2008, GLY1, Threonine aldolase [Amino acid transport and
metabolism].
Length = 342
Score = 30.2 bits (68), Expect = 1.0
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 19/94 (20%)
Query: 177 TAAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANV 236
T ++E EGG P + L+ + +C + L D G A +
Sbjct: 131 TPLAVLENTATEGG-TVYPLDELEAISAVCKEHGLPLHMD---------GARLANALVAL 180
Query: 237 KPDIMTIAKGM---------GGGFPIGACLATNE 261
+ TI + GGG P+GA + N
Sbjct: 181 GVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNR 214
>gnl|CDD|31642 COG1453, COG1453, Predicted oxidoreductases of the aldo/keto
reductase family [General function prediction only].
Length = 391
Score = 30.2 bits (68), Expect = 1.1
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 15/90 (16%)
Query: 158 FDQAKFCDLQSLKNQISNDTAAILIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDE 217
DQ + LK S ++EP+ G G + VPE+ L ++C
Sbjct: 178 IDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNVPEK----LEELCRPA-------- 225
Query: 218 VQTGYGRTGKLFAYEWANVKPDIMTIAKGM 247
R+ +A + P++ T+ GM
Sbjct: 226 ---SPKRSPAEWALRYLLSHPEVTTVLSGM 252
>gnl|CDD|144709 pfam01212, Beta_elim_lyase, Beta-eliminating lyase.
Length = 288
Score = 29.9 bits (68), Expect = 1.3
Identities = 37/184 (20%), Positives = 59/184 (32%), Gaps = 34/184 (18%)
Query: 92 VFFTNSG--AESVECAIKTARRYHYMAGKT-NKFR-----IVTFEGAFHGRTLATISAGG 143
F SG A + R + G+ + + GA L + G
Sbjct: 50 ALFVPSGTMANQLALMAHCRRGDEVICGEPAHIYFDETGGHAELGGA-QPVPL-PGAEAG 107
Query: 144 KLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILIEPIQGEGGVRKVPEEFLQQLR 203
KL LE I F T I +E G + V E L+++R
Sbjct: 108 KLD-LEDLEAAIRPVGDIHFPP-----------TGLISLENTHNSAGGQVVSLEELREIR 155
Query: 204 KICDDIDALLIFD-----EVQTGYGRTGK-LFAYEWANVKPDIMTIAKGMGGGFPIGACL 257
I + L D G K + +Y D ++++ G G P+G+ L
Sbjct: 156 AIAREHGIPLHLDGARLANAAVALGVIVKEITSYA------DSVSMSLSKGLGAPVGSVL 209
Query: 258 ATNE 261
A ++
Sbjct: 210 AGSD 213
>gnl|CDD|34178 COG4529, COG4529, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 474
Score = 28.7 bits (64), Expect = 2.9
Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 9/101 (8%)
Query: 13 QSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVSNLYQ 72
+ +R + G +L + P I V + GHS P + +++ Y
Sbjct: 129 ATSVRQDTNAGGYLVTTADGPSEIAD--IIVLATGHSAPPADPAARDLKGSPRLIADPYP 186
Query: 73 STQQEIFANHLIHSTFADRVFFTNSGAESVECAIKTARRYH 113
AN L DRV SG S++ + RR H
Sbjct: 187 -------ANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGH 220
>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like
proteins, child 1. 2-enoyl thioester reductase (ETR)
like proteins. ETR catalyzes the NADPH-dependent
conversion of trans-2-enoyl acyl carrier
protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty
acid synthesis. 2-enoyl thioester reductase activity has
been linked in Candida tropicalis as essential in
maintaining mitiochondrial respiratory function. This
ETR family is a part of the medium chain
dehydrogenase/reductase family, but lack the zinc
coordination sites characteristic of the 2-enoyl
thioester reductase (ETR) like proteins. ETR catalyzes
the NADPH-dependent dependent conversion of
trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA)
to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl
thioester reductase activity has been linked in Candida
tropicalis as essential in maintaining mitiochondrial
respiratory function. This ETR family is a part of the
medium chain dehydrogenase/reductase family, but lack
the zinc coordination sites characteristic of the
alcohol dehydrogenases in this family.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. The N-terminal catalytic domain has a
distant homology to GroES. These proteins typically
form dimers (typically higher plants, mammals) or
tetramers (yeast, bacteria), and have 2 tightly bound
zinc atoms per subunit, a catalytic zinc at the active
site and a structural zinc in a lobe of the catalytic
domain. NAD(H) binding occurs in the cleft between the
catalytic and coenzyme-binding domains at the active
site, and coenzyme binding induces a conformational
closing of this cleft. Coenzyme binding typically
precedes and contributes to substrate binding. Candida
tropicalis enoyl thioester reductase (Etr1p) catalyzes
the NADPH-dependent reduction of trans-2-enoyl
thioesters in mitochondrial fatty acid synthesis. Etr1p
forms homodimers, with each subunit containing a
nucleotide-binding Rossmann fold domain and a catalytic
domain.
Length = 324
Score = 28.3 bits (64), Expect = 3.3
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 196 EEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLF 229
+FL+ L+++ ++A + FD V G G TG++
Sbjct: 198 PDFLEDLKELIAKLNATIFFDAV--GGGLTGQIL 229
>gnl|CDD|30505 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism].
Length = 388
Score = 28.3 bits (63), Expect = 3.8
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 199 LQQLRKICDDIDALLIFDEVQ-TG-YGRTGKLFAYEWANVKPDIMTI-----AKGMG--G 249
L +L ++ + ALL DE G G G+ A E ++P+ + I K +G G
Sbjct: 190 LPELVELAEKYGALLYVDEAHAVGVLGPNGRGLA-EHFGLEPEEVDIIVGTLGKALGSSG 248
Query: 250 GFPIGACLATNEVAACMNQGSHGSTY 275
G+ + + + + +
Sbjct: 249 GY----IAGSAALIDYLRNRARPFIF 270
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.138 0.405
Gapped
Lambda K H
0.267 0.0851 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,665,801
Number of extensions: 248610
Number of successful extensions: 670
Number of sequences better than 10.0: 1
Number of HSP's gapped: 621
Number of HSP's successfully gapped: 37
Length of query: 392
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 296
Effective length of database: 4,189,273
Effective search space: 1240024808
Effective search space used: 1240024808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)