BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780432|ref|YP_003064845.1| acetylornithine transaminase
protein [Candidatus Liberibacter asiaticus str. psy62]
(392 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780432|ref|YP_003064845.1| acetylornithine transaminase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 392
Score = 810 bits (2092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/392 (100%), Positives = 392/392 (100%)
Query: 1 MNKNDFLFNTYDQSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQ 60
MNKNDFLFNTYDQSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQ
Sbjct: 1 MNKNDFLFNTYDQSDIRFEKGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQ 60
Query: 61 SEKLWHVSNLYQSTQQEIFANHLIHSTFADRVFFTNSGAESVECAIKTARRYHYMAGKTN 120
SEKLWHVSNLYQSTQQEIFANHLIHSTFADRVFFTNSGAESVECAIKTARRYHYMAGKTN
Sbjct: 61 SEKLWHVSNLYQSTQQEIFANHLIHSTFADRVFFTNSGAESVECAIKTARRYHYMAGKTN 120
Query: 121 KFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAI 180
KFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAI
Sbjct: 121 KFRIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAI 180
Query: 181 LIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDI 240
LIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDI
Sbjct: 181 LIEPIQGEGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDI 240
Query: 241 MTIAKGMGGGFPIGACLATNEVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLEN 300
MTIAKGMGGGFPIGACLATNEVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLEN
Sbjct: 241 MTIAKGMGGGFPIGACLATNEVAACMNQGSHGSTYGGNVLAMVLGEKVLNIIQSDGFLEN 300
Query: 301 VINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTVFSPALLAAKFRDECLLTAPSSD 360
VINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTVFSPALLAAKFRDECLLTAPSSD
Sbjct: 301 VINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGLKTVFSPALLAAKFRDECLLTAPSSD 360
Query: 361 NVVRILPPLTITAEEIHEGLERIERTAIKLSH 392
NVVRILPPLTITAEEIHEGLERIERTAIKLSH
Sbjct: 361 NVVRILPPLTITAEEIHEGLERIERTAIKLSH 392
>gi|254780488|ref|YP_003064901.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 423
Score = 136 bits (342), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 109/384 (28%), Positives = 183/384 (47%), Gaps = 31/384 (8%)
Query: 20 KGKGAWLFSENGIPFLDFASGIAVNSLGHSHPELVAILKSQSEKLWHVS-NLYQSTQQEI 78
K +G++L EN +D S V + GH HP ++ ++S SE + + Y E
Sbjct: 28 KTEGSYLIDENHDKIIDAISSWWVITHGHRHPIIMNAIRSASENYDQIIFSEYTHEPAEQ 87
Query: 79 FANHLIH--STFADRVFFTNSGAESVECAIKTARRYHYMAGKTNKFRIVTFEGAFHGRTL 136
A LI VFF++SG+ S+E A+K A + + + +IV E +HG T+
Sbjct: 88 LARLLIKIAPLGLQYVFFSDSGSTSIEVALKMALGF-FNNNNMPRNKIVVMEHGYHGDTI 146
Query: 137 ATISAGGKLQYLEGFGPKIEGFDQAKFCD-------LQSLKNQISNDT-AAILIEP-IQG 187
++S + + + P + + F L L+ S AA L+EP I G
Sbjct: 147 GSMSVSMRGAFNNSYEPLLFDVETIPFPHHNEEQKTLDDLEKHCSTQKIAAFLVEPLILG 206
Query: 188 EGGVRKVPEEFLQQLRKICDDIDALLIFDEVQTGYGRTGKLFAYEWANVKPDIMTIAKGM 247
GG++ L++ +I D LLI DEV TG+GRTGK+FA A++ PDI+ ++KG+
Sbjct: 207 AGGMQTYRPYILKEFMRITKKYDTLLIADEVMTGWGRTGKIFACNHADITPDILCLSKGI 266
Query: 248 -GGGFPIGACLATNEVAACMNQGS------HGSTYGGNVLAMVLGEKVLNIIQSDGFLEN 300
GG P+ A L + E+ H S+Y N +A L I + + +E
Sbjct: 267 TGGALPLAATLCSEEIFDSHLSSDKKKTFFHSSSYTANPIACAAALANLQIWEKEPVIER 326
Query: 301 VINIAKILFEGLTAIKNRFPNMFLEVRGQGLLIGL------KTVF--SPALLAAKFRDEC 352
+ N+ ++ + L+ +K+ F+ +R G ++ L K F A L FR++
Sbjct: 327 IKNLERMHADRLSLLKSN--KKFVNIRQMGTIVALDFNVQNKGYFFDKNAKLKNFFREKK 384
Query: 353 LLTAPSSDNVVRILPPLTITAEEI 376
+L P +++ ++PP ITA ++
Sbjct: 385 ILIRPLG-HIMYLMPPYCITATDL 407
>gi|255764516|ref|YP_003084344.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 341
Score = 26.6 bits (57), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 123 RIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILI 182
++ T +G + + T G KL+ ++ K+EG D LQ ++ Q+++DT + +
Sbjct: 106 KMNTIDGIVNDLAIQTEDVGRKLEQIDL--SKVEGLDPQTRKYLQDIQTQLTSDTLTLQL 163
Query: 183 E 183
+
Sbjct: 164 D 164
>gi|254780520|ref|YP_003064933.1| flagellar basal body rod modification protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 131
Score = 24.6 bits (52), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 290 NIIQSDGFLENVINIAKILFEGLTAI 315
NI +DG + V+N ++ GLTAI
Sbjct: 89 NITNADGSISGVVNAIQVSSTGLTAI 114
>gi|254780201|ref|YP_003064614.1| hypothetical protein CLIBASIA_00430 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 394
Score = 23.1 bits (48), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 82 HLIHSTFADRVFFTNSGAESVECAIKTARRYH 113
H + FA V +T ESV+C + R H
Sbjct: 363 HAVERFFACSVRYTEFSIESVDCVAEYERLLH 394
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 249,785
Number of Sequences: 1233
Number of extensions: 10479
Number of successful extensions: 22
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 5
length of query: 392
length of database: 328,796
effective HSP length: 76
effective length of query: 316
effective length of database: 235,088
effective search space: 74287808
effective search space used: 74287808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)