HHsearch alignment for GI: 254780434 and conserved domain: COG0042
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis].
Probab=99.66 E-value=4.4e-14 Score=114.75 Aligned_cols=226 Identities=19% Similarity=0.244 Sum_probs=151.5
Q ss_pred EECCEECCCCEEEC--CCCCCCHHHHHHHHH-CCC-CEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHH
Q ss_conf 88873359974853--468886779888740-367-52410200136878998862688425554100002477777889
Q gi|254780434|r 48 KVAGISLSNPLGMA--AGYDKNAEVPIELLK-LGF-GFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTV 123 (362)
Q Consensus 48 ~~~Gl~~~nPiglA--aG~dk~~~~~~~l~~-~G~-G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~ 123 (362)
T Consensus 3 ~~~~~~~~~~~~lAPM~gv-td~-~fR~l~~~~ga~~l~~TEmv~~~~~~~~~~~~~----------------------- 57 (323)
T COG0042 3 KIGLIELRNRVILAPMAGV-TDL-PFRRLARELGAYDLLYTEMVSAKALLHGRKKFL----------------------- 57 (323)
T ss_pred CCCCCCCCCCEEEECCCCC-CCH-HHHHHHHHHCCCCEEEEEEEECCHHHCCCHHHH-----------------------
T ss_conf 6455556787788348898-668-999999995887528974045304552770044-----------------------
Q ss_pred HHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC------CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9987641000121000110454246788776555420675526983033365------3221100002343211112244
Q gi|254780434|r 124 FSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPN------TPGLRSLQKKKNLERLLIHVMQ 197 (362)
Q Consensus 124 ~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPN------t~g~~~~~~~~~l~~~l~~v~~ 197 (362)
T Consensus 58 -~~~~~~~~e~p~~vQl~gsdp--~~laeaA~~~~~~g--~~~IDlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~ 132 (323)
T COG0042 58 -LLLDELEEERPVAVQLGGSDP--ELLAEAAKIAEELG--ADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVE 132 (323)
T ss_pred -HCCCCCCCCCCEEEEECCCCH--HHHHHHHHHHHHCC--CCEEEEECCCCCHHHHCCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf -305645667877999738998--99999999998669--9989876899928980898447771798999999999998
Q ss_pred HHHHHHHHCCCCCEEEEECC--CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 45565531268851786505--7777488899999876449829998066555323457754463221135645424689
Q gi|254780434|r 198 TREEEKIKTGKFVPIFLKIS--PDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTI 275 (362)
Q Consensus 198 ~~~~~~~~~~~~~Pi~vKLs--Pd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~ 275 (362)
T Consensus 133 av~--------~iPVTVKiRlG~d~~~~~~~~ia~~~~~~G~~~ltVHg----Rtr---------~~~y~~~----a~~~ 187 (323)
T COG0042 133 AVG--------DIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHG----RTR---------AQGYLGP----ADWD 187 (323)
T ss_pred HCC--------CCCEEEEEECCCCCHHCCHHHHHHHHHHCCCCEEEEEC----CCH---------HHCCCCC----CCHH
T ss_conf 538--------88749998578780020099999999967987899955----667---------6468986----4879
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHC-CCCEEEECHHHHCCCHHHHHHH
Q ss_conf 999999740897489996788999999999983-9997545278770697899999
Q gi|254780434|r 276 ALAKIRQRVGPKIAIIGTGGISSTKDALDKIMA-GANLIQLYSAMIYEGISLPKRI 330 (362)
Q Consensus 276 ~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~a-GAs~VQi~Tali~~Gp~~~~~I 330 (362)
T Consensus 188 ~I~~vk~~~~~-ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga-~~nP~l~~~i 241 (323)
T COG0042 188 YIKELKEAVPS-IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGA-LGNPWLFRQI 241 (323)
T ss_pred HHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHHHCCCEEEECHHH-HCCCHHHHHH
T ss_conf 99999986799-759857994999999999984189879974353-1695575533