HHsearch alignment for GI: 254780434 and conserved domain: COG1304
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism].
Probab=99.48 E-value=7.9e-12 Score=99.52 Aligned_cols=270 Identities=24% Similarity=0.280 Sum_probs=157.3
Q ss_pred HCCCCCCCCCCEEEECCEECCCCEEECCC-C----CCCHHHHHHHH-H-CC--CCEEECCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 10467889631168887335997485346-8----88677988874-0-36--752410200136878998862688425
Q gi|254780434|r 35 SFFPVHSDPRLNTKVAGISLSNPLGMAAG-Y----DKNAEVPIELL-K-LG--FGFVEIGTVTPHPQAGNPRPRVFRLTK 105 (362)
Q Consensus 35 ~~~~~~~~~~L~~~~~Gl~~~nPiglAaG-~----dk~~~~~~~l~-~-~G--~G~v~~ktit~~p~~GNp~PR~~r~~~ 105 (362)
T Consensus 44 ~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~------------ 111 (360)
T COG1304 44 RVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGSQRIEEVA------------ 111 (360)
T ss_pred CCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH------------
T ss_conf 45788665765157558602588788044455535735699999999980887010032557299952------------
Q ss_pred CCCCEEECCCCCCCHHHHHHHHHHHHHCCC-CCCEEECCC-----CCHHHHHHHHHHHHHHCCCCCE--EEEEC----CC
Q ss_conf 554100002477777889998764100012-100011045-----4246788776555420675526--98303----33
Q gi|254780434|r 106 DRAIINKLGFNNAGYHTVFSRLSKIQPTSP-IGINLGANK-----DSKDFILDYVSGIRLFFTIASY--FTINI----SS 173 (362)
Q Consensus 106 ~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~p-i~vsI~~~~-----~s~~~~~dy~~~~~~~~~~aD~--iEiNi----SC 173 (362)
T Consensus 112 ----------~~~~~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~~~i~--a~~~~~h~n~~qe~~~ 179 (360)
T COG1304 112 ----------AAPPFQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGIS--APALAIHLNVLQEATQ 179 (360)
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCHHHHHCC
T ss_conf ----------1715455659877764999999996698403631575426788999985347--7720133547787348
Q ss_pred CCCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 65322110000-----2343211112244455655312688517865-05777748889999987644982999806655
Q gi|254780434|r 174 PNTPGLRSLQK-----KKNLERLLIHVMQTREEEKIKTGKFVPIFLK-ISPDLSEEELDDIAVEVLSHKVEGIIVSNTTL 247 (362)
Q Consensus 174 PNt~g~~~~~~-----~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK-LsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~ 247 (362)
T Consensus 180 p~--g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~---~---~~D-~~~a~~tg~~~I~vsnhgg 250 (360)
T COG1304 180 PE--GDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGIL---A---PED-AAGAGGTGADGIEVSNHGG 250 (360)
T ss_pred CC--CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHCCC---C---HHH-HHHHCCCCCEEEEEECCCC
T ss_conf 76--6656530045899999843787333777767877507758774789---7---888-8763368822899976787
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC----CC
Q ss_conf 53234577544632211356454246899999997408974899967889999999999839997545278770----69
Q gi|254780434|r 248 SRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY----EG 323 (362)
Q Consensus 248 ~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~----~G 323 (362)
T Consensus 251 ----------rqlD~g~s-------t~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g 313 (360)
T COG1304 251 ----------RQLDWGIS-------TADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGG 313 (360)
T ss_pred ----------CCCCCCCC-------HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf ----------40257877-------6999999999718871799638878778999999937765452599999998556
Q ss_pred H----HHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
Q ss_conf 7----899999999999999838997789616975
Q gi|254780434|r 324 I----SLPKRIIQGLSDFLNKENEVNFENIRGSYT 354 (362)
Q Consensus 324 p----~~~~~I~~~L~~~l~~~G~~si~e~iG~~~ 354 (362)
T Consensus 314 ~~GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l 348 (360)
T COG1304 314 EAGVERVLEIIRKELKIAMALTGAKNIEELKRVPL 348 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCE
T ss_conf 87899999999999999997428881999655736