HHsearch alignment for GI: 254780434 and conserved domain: PRK13111
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional.
Probab=98.25 E-value=0.00022 Score=49.38 Aligned_cols=209 Identities=22% Similarity=0.293 Sum_probs=107.5
Q ss_pred ECCC-CCC--CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH--HCC
Q ss_conf 5346-888--67798887403675241020013687899886268842555410000247777788999876410--001
Q gi|254780434|r 60 MAAG-YDK--NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ--PTS 134 (362)
Q Consensus 60 lAaG-~dk--~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~--~~~ 134 (362)
T Consensus 15 ~taG~P~~e~~~~~~~~l~~~Gad~iEiGiPfSDP~a--DGpvIq-~a~~~AL~~G-----~~~~~~f~~~~~~r~~~~~ 86 (256)
T PRK13111 15 ITAGDPDLETSLEILKALVEAGADIIELGIPFSDPVA--DGPVIQ-RASLRALAAG-----VTLADVLELLREIRAKPTI 86 (256)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC--CCHHHH-HHHHHHHHCC-----CCHHHHHHHHHHHHCCCCC
T ss_conf 7070899899999999999659999997888788766--579999-9999999779-----9699999999998606899
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 21000110454246788776555420675526983033365322110000234321111224445565531268851786
Q gi|254780434|r 135 PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFL 214 (362)
Q Consensus 135 pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~v 214 (362)
T Consensus 87 pivlM~Y~N~i~~~G~e~F~~~~~~~G--vdGvIi----pDLP-------~eE~~~~~~~~~~----------~gi~~I~ 143 (256)
T PRK13111 87 PIVLMTYYNPIFQYGVEAFAADAAEAG--VDGLII----PDLP-------PEEAEEFRAAAKK----------HGIDLIF 143 (256)
T ss_pred CEEEEEECCHHHHHCHHHHHHHHHHCC--CCEEEE----CCCC-------HHHHHHHHHHHHH----------CCCEEEE
T ss_conf 889985030898709999999999759--977981----6999-------7888999999997----------5980899
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 50577774888999998764498299980665553234577544632211356454246899999997408974899967
Q gi|254780434|r 215 KISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG 294 (362)
Q Consensus 215 KLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G 294 (362)
T Consensus 144 lvaPtt~~~Ri~~i~~~s-----~gfiY~vs---~~GvT--------G-~-~~~~~~~~~~~i~~ik~~t--~~Pi~-vG 202 (256)
T PRK13111 144 LVAPTTTDERLKKIASHA-----SGFVYYVS---RAGVT--------G-A-RSADAADVADLLARLKAHT--DLPVA-VG 202 (256)
T ss_pred EECCCCCHHHHHHHHHHC-----CCEEEEEE---CCCCC--------C-C-CCCCHHHHHHHHHHHHHCC--CCCEE-EE
T ss_conf 969999889999999626-----98599985---67767--------8-8-7666288999999998706--89758-85
Q ss_pred -CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf -889999999999839997545278770
Q gi|254780434|r 295 -GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 295 -GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
T Consensus 203 FGIs~~e~v~~~~-~~aDGvIVGSaiv~ 229 (256)
T PRK13111 203 FGISTPEQAAAIA-EGADGVIVGSALVK 229 (256)
T ss_pred CCCCCHHHHHHHH-CCCCEEEECHHHHH
T ss_conf 2889999999997-45999998689999