HHsearch alignment for GI: 254780434 and conserved domain: PRK13125
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional.
Probab=98.57 E-value=5.2e-06 Score=60.32 Aligned_cols=229 Identities=17% Similarity=0.203 Sum_probs=121.8
Q ss_pred ECCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 5346-88--86779888740367524102001368789988626884255541000024777778899987641000121
Q gi|254780434|r 60 MAAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPI 136 (362)
Q Consensus 60 lAaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi 136 (362)
T Consensus 11 itaG~P~~e~s~~~l~~l~~~-aDiiElGiPfSDPvAD--GpvIq-~A~~~Al~~--g---~~~~~i~~~~r~-~~~~pi 80 (247)
T PRK13125 11 LTAGWPNAETFLEAIDGLVGL-VDFLELGIPPKNPKYD--GPVIR-KAHREVSYW--G---LDYWSLLEEVRK-KVGVPT 80 (247)
T ss_pred EECCCCCHHHHHHHHHHHHHC-CCEEEECCCCCCCCCC--HHHHH-HHHHHHHHC--C---CCHHHHHHHHCC-CCCCCE
T ss_conf 718379989999999998647-9999979988987666--09999-999999876--9---989999998505-689988
Q ss_pred CCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 00011045424678877655542067552698303336532211000023432111122444556553126885178650
Q gi|254780434|r 137 GINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKI 216 (362)
Q Consensus 137 ~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKL 216 (362)
T Consensus 81 vlM~Y~N-~~~~g~e~F~~~~~~~G--vdGvIi-pDLP-------~e~~ee~~~~~~~~~~----------~gl~~I~lv 139 (247)
T PRK13125 81 YIMTYLE-DYVGSLDDLLNTAKEVG--ARGVLF-PDLL-------IDFPDELEKYVELIRR----------YGLAPVFFT 139 (247)
T ss_pred EEHHHHH-HHHHHHHHHHHHHHHCC--CCEEEE-CCCC-------CCCHHHHHHHHHHHHH----------CCCCEEEEE
T ss_conf 9729889-99976999999999859--975883-3888-------7546789999999997----------698469995
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC-C
Q ss_conf 577774888999998764498299980665553234577544632211356454246899999997408974899967-8
Q gi|254780434|r 217 SPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG-G 295 (362)
Q Consensus 217 sPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G-G 295 (362)
T Consensus 140 sPtt~~~ri~~i~~~s-----~gFvY~~~-~---g------------vTG~~~~~~~~~~i~~ik~~~~-~~Pv-~vGFG 196 (247)
T PRK13125 140 SPKFPDRLIRRLSKLS-----PLFIYLGL-Y---P------------ATGVELPVYVERNIKRVRELVG-DVYL-VAGFA 196 (247)
T ss_pred CCCCCHHHHHHHHHHC-----CCEEEEEE-E---C------------CCCCCCCCCHHHHHHHHHHHCC-CCCE-EEECC
T ss_conf 7998199999999868-----97799994-4---3------------6788773259999999998569-9985-88328
Q ss_pred CCCHHHHHHHHHCCCCEEEECHHHHC----CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 89999999999839997545278770----697899999999999999838
Q gi|254780434|r 296 ISSTKDALDKIMAGANLIQLYSAMIY----EGISLPKRIIQGLSDFLNKEN 342 (362)
Q Consensus 296 I~s~~Da~e~l~aGAs~VQi~Tali~----~Gp~~~~~I~~~L~~~l~~~G 342 (362)
T Consensus 197 I~t~e~v~~~~~~~aDGvIVGSaiVk~i~~~~~~~~~~~v~~l~~al~e~~ 247 (247)
T PRK13125 197 IDSPEDAAKALSAGADGVVVGTAFIRRLERNGVEEALSLLKEIRGALDEYG 247 (247)
T ss_pred CCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
T ss_conf 799999999985589999987899999997698999999999999985259