HHsearch alignment for GI: 254780434 and conserved domain: TIGR00007
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=98.17 E-value=3.2e-05 Score=54.99 Aligned_cols=138 Identities=22% Similarity=0.278 Sum_probs=86.5
Q ss_pred HHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC----CEEEEECCC-CCCHHHHHHHHHHH
Q ss_conf 4206755269830333653221100002343211112244455655312688----517865057-77748889999987
Q gi|254780434|r 158 RLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKF----VPIFLKISP-DLSEEELDDIAVEV 232 (362)
Q Consensus 158 ~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~----~Pi~vKLsP-d~~~~~i~~ia~~a 232 (362)
T Consensus 90 ~ll~~Gv~RVI~G--------T~A~~~~~~v~~~~~~~g~~~i~V~lD~~~g~~G~~~V~v~-GW~E~s~~~~~~~~~~~ 160 (241)
T TIGR00007 90 KLLDLGVDRVIIG--------TAAVENPDLVKELLKEYGPERIVVSLDARDGEEGVKEVAVK-GWKEKSEVSLEELAKRL 160 (241)
T ss_pred HHHHCCCCEEEEE--------EEEECCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEE-EEECCCCCCHHHHHHHH
T ss_conf 9997398579973--------32210869999999984899659998631488751788874-04113562799999998
Q ss_pred HHCC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH--CC
Q ss_conf 6449-82999806655532345775446322113564542468999999974089748999678899999999998--39
Q gi|254780434|r 233 LSHK-VEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIM--AG 309 (362)
Q Consensus 233 ~~~g-~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~--aG 309 (362)
T Consensus 161 ~~~G~~~~ii~Td--I~~DG-----------tl~G~n~-----~~~~~~~~~~-~~~~viaSGGv~s~~D~~~L~~~~~G 221 (241)
T TIGR00007 161 EELGELEGIIYTD--ISRDG-----------TLSGPNF-----ELTKELVKAL-VNVPVIASGGVSSIDDLRALKEIELG 221 (241)
T ss_pred HHCCCCCEEEEEE--EECCC-----------CEECCCC-----CHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 5158633689975--20067-----------2007873-----2889999873-58418994265788999999971598
Q ss_pred CCEEEECHHHHCCCH
Q ss_conf 997545278770697
Q gi|254780434|r 310 ANLIQLYSAMIYEGI 324 (362)
Q Consensus 310 As~VQi~Tali~~Gp 324 (362)
T Consensus 222 ~~GvIvGkAL-Y~g~ 235 (241)
T TIGR00007 222 VYGVIVGKAL-YEGK 235 (241)
T ss_pred CCEEEEEEEE-CCCC
T ss_conf 3279986211-1688