HHsearch alignment for GI: 254780434 and conserved domain: TIGR00736
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative; InterPro: IPR005270 The function of this family is unknown, but it may include TIM-barrel proteins..
Probab=98.71 E-value=1.5e-07 Score=70.60 Aligned_cols=218 Identities=18% Similarity=0.214 Sum_probs=144.8
Q ss_pred CCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCE--EEEECCCCCEEECCCCCCCHHHHHHHHHHHHH-CCCCCC
Q ss_conf 468886779888740367524102001368789988626--88425554100002477777889998764100-012100
Q gi|254780434|r 62 AGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRV--FRLTKDRAIINKLGFNNAGYHTVFSRLSKIQP-TSPIGI 138 (362)
Q Consensus 62 aG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~--~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~-~~pi~v 138 (362)
T Consensus 2 AGi-~daeFCrK~k~y~f~~V~lGGyNaDr~t-~~A~r~i~kRGR-kEF~f~~~e~~s----~I~~~~~~~~Esr~~v~V 74 (234)
T TIGR00736 2 AGI-SDAEFCRKLKDYLFALVTLGGYNADRET-LKAARKIEKRGR-KEFSFDLEELES----IIKKEAKKIKESRAKVAV 74 (234)
T ss_pred CCC-CCHHHHHHHHHHHCEEEEECCCCHHHHH-HHHHHHHHHCCC-CCCCCCCCHHHH----HHHHHHHHHHHCCCEEEE
T ss_conf 988-5245554443411003122563033899-998999985589-400125322457----888766764220352578
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC---C---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 0110454246788776555420675526983033365---3---221100002343211112244455655312688517
Q gi|254780434|r 139 NLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPN---T---PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPI 212 (362)
Q Consensus 139 sI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPN---t---~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi 212 (362)
T Consensus 75 nVr~~-----~le~~~~v~~~~ae~~diiEiNaHCRQPEiteiG~Gq~ll~n~e~L~ef~~k~~G~---------~~~p~ 140 (234)
T TIGR00736 75 NVRIS-----DLEEELDVELLVAEFADIIEINAHCRQPEITEIGIGQELLKNKELLKEFVAKVKGK---------LRKPV 140 (234)
T ss_pred EEEEE-----CCHHHHHHHHHHHHHCCEEEECCCCCCCCEEEECCCHHHHCCCHHHHHHHHHHCCC---------CCCCE
T ss_conf 86530-----00045677665421137378857588976155056535423802578887530343---------14723
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 86505777748889999987644982999806655532345775446322113564542468999999974089748999
Q gi|254780434|r 213 FLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIG 292 (362)
Q Consensus 213 ~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg 292 (362)
T Consensus 141 fvKIRgN~~~ld~~~~a~~l~d~g~d~iHv------------Dam~PG------~~~a--D~~l~~~~se~~nD~I-~IG 199 (234)
T TIGR00736 141 FVKIRGNVIKLDELKVARKLVDAGVDAIHV------------DAMKPG------EDRA--DLDLVKLVSEVKNDKI-VIG 199 (234)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCEEEE------------EEECCC------CCCC--CHHHHHHHHHHCCCEE-EEE
T ss_conf 789715787510357878988732355554------------322593------6936--7899999887618857-980
Q ss_pred ECCCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 67889999999999839997545278770
Q gi|254780434|r 293 TGGISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 293 ~GGI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
T Consensus 200 NNS~~dIE~a~~~l~aGad~vSvARa~l~ 228 (234)
T TIGR00736 200 NNSVDDIESAKEMLKAGADAVSVARAVLK 228 (234)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68710368899999840158999999861