HHsearch alignment for GI: 254780434 and conserved domain: TIGR01036

>TIGR01036 pyrD_sub2 dihydroorotate oxidase; InterPro: IPR005719 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This model describes dihydroorotate dehydrogenase subfamily 2 and includes members from bacteria and eukaryotes. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus, however subfamily 2 has a longer N-terminal region.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0016020 membrane.
Probab=100.00  E-value=0  Score=773.27  Aligned_cols=349  Identities=44%  Similarity=0.697  Sum_probs=335.4

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHH--------HHHCCCCCCCCCCEEEECCEECCCCEEECCCCCCCHHHHHHHHHC
Q ss_conf             999999975089678899999999620--------111046788963116888733599748534688867798887403
Q gi|254780434|r    6 HKLALRGLTHLDPEIAHHLSIVALKSG--------LLSFFPVHSDPRLNTKVAGISLSNPLGMAAGYDKNAEVPIELLKL   77 (362)
Q Consensus         6 ~~~~~~~l~~~~pe~ah~~~~~~~~~~--------~~~~~~~~~~~~L~~~~~Gl~~~nPiglAaG~dk~~~~~~~l~~~   77 (362)
T Consensus         1 Y~Lvr~~lF~lDpE~AH~~~~~~Lr~~~~~~F~~~L~r~~~~~~~P~L~~~vlG~~FpNPlGLAAGfDK~G~a~d~l~Am   80 (370)
T TIGR01036         1 YPLVRKLLFLLDPEKAHELVFQVLRLVAASPFLARLLRSLLGAKDPVLEVTVLGLKFPNPLGLAAGFDKDGEALDALGAM   80 (370)
T ss_pred             CCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEECCCCCCCCHHHHCCCCCCHHHHHHHHHH
T ss_conf             95210141589977889999999864125640345578646888788643123410686133423799876699875641


Q ss_pred             CCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHH--------HHHCCCCCCEEECCCC--CH
Q ss_conf             6752410200136878998862688425554100002477777889998764--------1000121000110454--24
Q gi|254780434|r   78 GFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSK--------IQPTSPIGINLGANKD--SK  147 (362)
Q Consensus        78 G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~--------~~~~~pi~vsI~~~~~--s~  147 (362)
T Consensus        81 GFG~~EiGTVTp~pQ~GN~~PRlFRL~e~~~liNRmGFNN~G~~~l~~~~k~~qqkqakla~y~~piGiNiGKNK~t~~~  160 (370)
T TIGR01036        81 GFGYLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADLLVERLKRFQQKQAKLARYKGPIGINIGKNKKTPAE  160 (370)
T ss_pred             CCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHH
T ss_conf             84247541205888667777864254557887632052056799999999986545420278985264324888666544


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf             67887765554206755269830333653221100002343211112244455655312688517865057777488899
Q gi|254780434|r  148 DFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDD  227 (362)
Q Consensus       148 ~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~  227 (362)
T Consensus       161 ~a~~DY~~~~~~~~~~A~Y~~vN~SSPNTPgLR~LQ~~~~~~~LL~~~k~~~~~L~~~~~KY~P~~VKIAPDL~~~dl~~  240 (370)
T TIGR01036       161 DAKEDYKACLRKVGPLADYLVVNVSSPNTPGLRDLQYKESLRDLLTAVKEETDGLRRVHRKYVPVLVKIAPDLSESDLLD  240 (370)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH
T ss_conf             22668999999873210707886358897351324014358999999999999999861278857897268988213899


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCC-CCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
Q ss_conf             999876449829998066555323-4577544-63221135645424689999999740897489996788999999999
Q gi|254780434|r  228 IAVEVLSHKVEGIIVSNTTLSRKG-VQCSDNH-EQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDK  305 (362)
Q Consensus       228 ia~~a~~~g~dGiv~~NT~~~~~~-~~~~~~~-~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~  305 (362)
T Consensus       241 IAd~~v~~~~dG~IATNTT~sR~~Gv~g~k~~r~~~GGLSGkPL~~kS~eiirrL~~~~~gr~piIgVGGI~~~~~A~Ek  320 (370)
T TIGR01036       241 IADSAVELGIDGIIATNTTVSRDLGVTGPKNSREETGGLSGKPLQKKSTEIIRRLYKELKGRLPIIGVGGISSAQNALEK  320 (370)
T ss_pred             HHHHHHHCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH
T ss_conf             99999871898489844510252002563214356789887514477899999999996495789962785747889999


Q ss_pred             HHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
Q ss_conf             9839997545278770697899999999999999838997789616975
Q gi|254780434|r  306 IMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYT  354 (362)
Q Consensus       306 l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~~~  354 (362)
T Consensus       321 I~AGASLlQ~YsgfIy~GP~l~k~i~~~i~~lL~~~GFgsv~eAiGad~  369 (370)
T TIGR01036       321 IKAGASLLQIYSGFIYKGPPLVKEIVKEIEKLLKEDGFGSVKEAIGADR  369 (370)
T ss_pred             HHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCC
T ss_conf             9847124456423466771679999999999975179612244102356