HHsearch alignment for GI: 254780434 and conserved domain: TIGR01768
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein; InterPro: IPR008205 This family contains prokaryotic proteins that are related to pcrB. Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40 0dentity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB . The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown..
Probab=97.96 E-value=7.7e-05 Score=52.41 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=64.3
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHH
Q ss_conf 775446322113564542468999999974--089748999678899999999998399975452787706978999999
Q gi|254780434|r 254 CSDNHEQDGGLSGSPLFLKSTIALAKIRQR--VGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRII 331 (362)
Q Consensus 254 ~~~~~~~~GGlSG~~i~~~al~~i~~i~~~--~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~ 331 (362)
T Consensus 160 ~~~~YLEagsgap~pvpPE~va~vk~v~~~aGyGGe~~L~vGGGIRs~E~A~~~a~AgAD~~VtGn-vie~~~nv~~k~~ 238 (242)
T TIGR01768 160 MPIIYLEAGSGAPEPVPPELVAEVKKVLDKAGYGGEVKLIVGGGIRSVEKARKLAEAGADVVVTGN-VIEEDDNVVDKAL 238 (242)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEE-EEECCHHHHHHHH
T ss_conf 968999637875479745899999987410478863257840764788999999534598999846-8751637899999
Q ss_pred H
Q ss_conf 9
Q gi|254780434|r 332 Q 332 (362)
Q Consensus 332 ~ 332 (362)
T Consensus 239 ~ 239 (242)
T TIGR01768 239 E 239 (242)
T ss_pred H
T ss_conf 9