HHsearch alignment for GI: 254780434 and conserved domain: TIGR02151
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=99.65 E-value=4.7e-15 Score=121.27 Aligned_cols=262 Identities=19% Similarity=0.260 Sum_probs=172.2
Q ss_pred CCCCCCCEEEECCEECCCCEEECCCCCC--------CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCE
Q ss_conf 7889631168887335997485346888--------67798887403675241020013687899886268842555410
Q gi|254780434|r 39 VHSDPRLNTKVAGISLSNPLGMAAGYDK--------NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAII 110 (362)
Q Consensus 39 ~~~~~~L~~~~~Gl~~~nPiglAaG~dk--------~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~ii 110 (362)
T Consensus 40 ~~~~idl~t~flG~~~~~P~~I~aMTGG~~~~a~~IN~~LA~aA~e~gi~-mgvGSq-----------ra---------- 97 (349)
T TIGR02151 40 NLDEIDLTTEFLGKRLKAPFLINAMTGGSEEKAGKINRKLARAAEELGIP-MGVGSQ-----------RA---------- 97 (349)
T ss_pred CHHHCCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC-EEECHH-----------HH----------
T ss_conf 75362642444682211676761455773678889989999999981981-543002-----------22----------
Q ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCH----HHHHHHHHHHHHHCCCCCEEEEECCCCC----CCCCCCC
Q ss_conf 0002477777889998764100012100011045424----6788776555420675526983033365----3221100
Q gi|254780434|r 111 NKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSK----DFILDYVSGIRLFFTIASYFTINISSPN----TPGLRSL 182 (362)
Q Consensus 111 N~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~----~~~~dy~~~~~~~~~~aD~iEiNiSCPN----t~g~~~~ 182 (362)
T Consensus 98 ---al~~P~~~~tF~~vR~~aP~~~l~AN~GA~q~~~~~~~~g~~~~~~aid~i~--AdAL~iHlN~~QE~vqpEGDr~F 172 (349)
T TIGR02151 98 ---ALKDPEVAETFEVVREEAPNGPLIANIGAPQLVEGGKKYGVEEAQEAIDMIE--ADALAIHLNVLQELVQPEGDRNF 172 (349)
T ss_pred ---HHCCCHHHHHHHHHHHHCCCCCEEECCCHHHHHCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHCCCCCCCCCHHH
T ss_conf ---1127124666999997679833787178788740653448899999998751--01335543233025579997015
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE-----CCCCCCHHHHHHHHHHHHHCCCCEEEEEC---CC-----CCC
Q ss_conf 002343211112244455655312688517865-----05777748889999987644982999806---65-----553
Q gi|254780434|r 183 QKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK-----ISPDLSEEELDDIAVEVLSHKVEGIIVSN---TT-----LSR 249 (362)
Q Consensus 183 ~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK-----LsPd~~~~~i~~ia~~a~~~g~dGiv~~N---T~-----~~~ 249 (362)
T Consensus 173 -----~~G~l~~i~~~------~~~~~vPVIvKEvG~G~S--------~e~a~~L~~~Gv~aiDv~G~GGTswa~vE~~R 233 (349)
T TIGR02151 173 -----SKGWLEKIAEI------CSAVSVPVIVKEVGFGIS--------KEVAKLLADAGVKAIDVSGAGGTSWAAVENYR 233 (349)
T ss_pred -----HHHHHHHHHHH------HHHCCCCEEEEECCCCCC--------HHHHHHHHHCCEEEEEECCCCCCCHHHHHHHH
T ss_conf -----65389999999------965289879982157998--------89999998789008870787675599999887
Q ss_pred -CCCC--CC----CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-
Q ss_conf -2345--77----544632211356454246899999997408974899967889999999999839997545278770-
Q gi|254780434|r 250 -KGVQ--CS----DNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY- 321 (362)
Q Consensus 250 -~~~~--~~----~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~- 321 (362)
T Consensus 234 r~~~~~~~~~r~a~~f~~W-Gip-------T~~sL~~~~~~~~~~~~~iASGG~r~GlD~AKAlALGA~~~G~A~~~L~~ 305 (349)
T TIGR02151 234 RAKESNQKYERLASAFSDW-GIP-------TAASLLEVRSIDAPDAPLIASGGLRTGLDVAKALALGADAVGMARPLLKA 305 (349)
T ss_pred HHCCCCCHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5157523578887777414-886-------68999998642124773688467778889999999621188888999998
Q ss_pred ---CCH----HHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
Q ss_conf ---697----899999999999999838997789616975
Q gi|254780434|r 322 ---EGI----SLPKRIIQGLSDFLNKENEVNFENIRGSYT 354 (362)
Q Consensus 322 ---~Gp----~~~~~I~~~L~~~l~~~G~~si~e~iG~~~ 354 (362)
T Consensus 306 ~~~~g~e~~~~~~~~~~~eLk~~mfl~G~~~i~EL~~~~~ 345 (349)
T TIGR02151 306 ALDEGEEAVIEEIELIIEELKVAMFLTGAKNIKELKKVPL 345 (349)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCE
T ss_conf 8526988999999999999999998717988798617871