HHsearch alignment for GI: 254780434 and conserved domain: cd00452
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.68 E-value=0.053 Score=33.29 Aligned_cols=156 Identities=16% Similarity=0.216 Sum_probs=86.2
Q ss_pred HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCH
Q ss_conf 77988874036752410200136878998862688425554100002477777889998764100012100011045424
Q gi|254780434|r 68 AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSK 147 (362)
Q Consensus 68 ~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~ 147 (362)
T Consensus 19 ~~~~~al~~~Gi~~iEit-----------------------------l~t~~a~~~i~~l~~~~~~~~iGa---GTV~~~ 66 (190)
T cd00452 19 LALAEALIEGGIRAIEIT-----------------------------LRTPGALEAIRALRKEFPEALIGA---GTVLTP 66 (190)
T ss_pred HHHHHHHHHCCCCEEEEE-----------------------------CCCCHHHHHHHHHHHHCCCCEEEE---CCCCCH
T ss_conf 999999998699889996-----------------------------788029999999998689808965---234779
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 67887765554206755269830333653221100002343211112244455655312688517865057777488899
Q gi|254780434|r 148 DFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDD 227 (362)
Q Consensus 148 ~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ 227 (362)
T Consensus 67 ~~~~------~a~~aGa~Fi----vsP~~~-------~----~v~~~a~----------~~~~~~iPGv~---Tp---sE 109 (190)
T cd00452 67 EQAD------AAIAAGAQFI----VSPGLD-------P----EVVKAAN----------RAGIPLLPGVA---TP---TE 109 (190)
T ss_pred HHHH------HHHHCCCCEE----ECCCCC-------H----HHHHHHH----------HCCCCEECCCC---CH---HH
T ss_conf 9999------9998599899----737799-------9----9999999----------82996657879---99---99
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 99987644982999806655532345775446322113564542468999999974089748999678899999999998
Q gi|254780434|r 228 IAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIM 307 (362)
Q Consensus 228 ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~ 307 (362)
T Consensus 110 -i~~A~~~G~~~vK~FPa------------~--~~---G-------~~~lkal~~pf-p~~~~~ptGGI~~-~N~~~yl~ 162 (190)
T cd00452 110 -IMQALELGADIVKLFPA------------E--AV---G-------PAYIKALKGPF-PQVRFMPTGGVSL-DNAAEWLA 162 (190)
T ss_pred -HHHHHHCCCCEEEECCC------------C--CC---C-------HHHHHHHHCCC-CCCCEEEECCCCH-HHHHHHHH
T ss_conf -99999879998998955------------1--14---9-------99999985548-9993899679998-88999996
Q ss_pred CCCCEEEECHHH
Q ss_conf 399975452787
Q gi|254780434|r 308 AGANLIQLYSAM 319 (362)
Q Consensus 308 aGAs~VQi~Tal 319 (362)
T Consensus 163 ~gv~avG~g~~l 174 (190)
T cd00452 163 AGVVAVGGGSLL 174 (190)
T ss_pred CCCEEEEECHHC
T ss_conf 899899954125