HHsearch alignment for GI: 254780434 and conserved domain: cd00950
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=96.58 E-value=0.037 Score=34.34 Aligned_cols=189 Identities=13% Similarity=0.135 Sum_probs=86.6
Q ss_pred HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHH-HHCCCCCCEEECCCCC
Q ss_conf 779888740367524102001368789988626884255541000024777778899987641-0001210001104542
Q gi|254780434|r 68 AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKI-QPTSPIGINLGANKDS 146 (362)
Q Consensus 68 ~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~-~~~~pi~vsI~~~~~s 146 (362)
T Consensus 24 ~~~v~~l~~~Gv~gi~v~GstGE~---------~~L------------s~~Er~~l~~~~~~~~~~~~~vi~gv~~~~-t 81 (284)
T cd00950 24 ERLIEFQIENGTDGLVVCGTTGES---------PTL------------SDEEHEAVIEAVVEAVNGRVPVIAGTGSNN-T 81 (284)
T ss_pred HHHHHHHHHCCCCEEEECEECCCH---------HHC------------CHHHHHHHHHHHHHHCCCCCEEEEECCCCC-H
T ss_conf 999999997699989968435124---------248------------999999999999997189750775078778-9
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC-----CCC
Q ss_conf 467887765554206755269830333653221100002343211112244455655312688517865057-----777
Q gi|254780434|r 147 KDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISP-----DLS 221 (362)
Q Consensus 147 ~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsP-----d~~ 221 (362)
T Consensus 82 ~~~-i~~a~~A~~~--Gadai~v~--pP~y~~----~s~~~l~~~~~~ia---------~a~~lPi~lYn~P~~tg~~l~ 143 (284)
T cd00950 82 AEA-IELTKRAEKA--GADAALVV--TPYYNK----PSQEGLYAHFKAIA---------EATDLPVILYNVPGRTGVNIE 143 (284)
T ss_pred HHH-HHHHHHHHHC--CCCEEEEC--CCCCCC----CCHHHHHHHHHHHH---------HCCCCCEEEEECCCCCCCCCC
T ss_conf 999-9999999983--99989962--665789----79999999999997---------555997798737641167888
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH
Q ss_conf 48889999987644982999806655532345775446322113564542468999999974089748999678899999
Q gi|254780434|r 222 EEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKD 301 (362)
Q Consensus 222 ~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~D 301 (362)
T Consensus 144 ~~~l~~L~~---~pnv~giK--~s-------------------s~------d~~~~~~~~~~~~~~~~v~~--G--~d~~ 189 (284)
T cd00950 144 PETVLRLAE---HPNIVGIK--EA-------------------TG------DLDRVSELIALCPDDFAVLS--G--DDAL 189 (284)
T ss_pred HHHHHHHHC---CCCEEEEE--CC-------------------CC------CHHHHHHHHHHCCCCCEEEC--C--CHHH
T ss_conf 899999847---99989998--58-------------------89------89999999986698754644--8--6899
Q ss_pred HHHHHHCCCCEEEECHHHHCCCHHHHHHHHH
Q ss_conf 9999983999754527877069789999999
Q gi|254780434|r 302 ALDKIMAGANLIQLYSAMIYEGISLPKRIIQ 332 (362)
Q Consensus 302 a~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~ 332 (362)
T Consensus 190 ~~~~l~~Ga~G~i~~~~n~~--P~~~~~l~~ 218 (284)
T cd00950 190 TLPFLALGGVGVISVAANVA--PKLMAEMVR 218 (284)
T ss_pred HHHHHHHCCCEEEEEEHHCC--HHHHHHHHH
T ss_conf 99999954996998531027--899999999