HHsearch alignment for GI: 254780434 and conserved domain: cd02808

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=98.84  E-value=2e-07  Score=69.85  Aligned_cols=169  Identities=17%  Similarity=0.199  Sum_probs=103.3

Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             65554206755269830333653221100002343211112244455655312688517865057777488899999876
Q gi|254780434|r  154 VSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVL  233 (362)
Q Consensus       154 ~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~  233 (362)
T Consensus       174 IA~~R~~~~G~d~i-----SP~~--h~~i~s~edl~~~I~~LR~~--------~~~kpVgvKl~~g~---~~~~l~~~~~  235 (392)
T cd02808         174 IAKIRGIPPGVDLI-----SPPP--HHDIYSIEDLAQLIEDLREA--------TGGKPIGVKLVAGH---GEGDIAAGVA  235 (392)
T ss_pred             HHHHCCCCCCCCCC-----CCCC--CCCCCCHHHHHHHHHHHHHH--------CCCCCEEEEECCCC---CHHHHHHHHH
T ss_conf             99880899998877-----9976--56669999999999999972--------89980799968889---8899999999


Q ss_pred             HCCCCEEEEECC---CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf             449829998066---5553234577544632211356454246899999997--40897489996788999999999983
Q gi|254780434|r  234 SHKVEGIIVSNT---TLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQ--RVGPKIAIIGTGGISSTKDALDKIMA  308 (362)
Q Consensus       234 ~~g~dGiv~~NT---~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~--~~~~~i~IIg~GGI~s~~Da~e~l~a  308 (362)
T Consensus       236 ~~~~DfItIDG~eGGTGAaP~~----~~----d~~GlP~~~-~l~~~~~~L~~~glr~~i~liasGgl~t~~di~kalaL  306 (392)
T cd02808         236 AAGADFITIDGAEGGTGAAPLT----FI----DHVGLPTEL-GLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALAL  306 (392)
T ss_pred             HCCCCEEEEECCCCCCCCCHHH----HH----HCCCCCHHH-HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             6479999960799875414299----99----749973899-99999999997699676379963885747899999986


Q ss_pred             CCCEEEECHHHHCC-C--------------------H----------------HHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             99975452787706-9--------------------7----------------8999999999999998389977896
Q gi|254780434|r  309 GANLIQLYSAMIYE-G--------------------I----------------SLPKRIIQGLSDFLNKENEVNFENI  349 (362)
Q Consensus       309 GAs~VQi~Tali~~-G--------------------p----------------~~~~~I~~~L~~~l~~~G~~si~e~  349 (362)
T Consensus       307 GAD~v~~a~~~m~alGCiq~~~C~~~~CP~GiaTqd~~l~~~l~~~~~a~rv~ny~~~~~~el~~~~~a~G~~~~~~l  384 (392)
T cd02808         307 GADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRSLELL  384 (392)
T ss_pred             CCCHHHHCHHHHHHHHCHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf             756451056999987479976505998996111379888414686546999999999999999999998579994788