HHsearch alignment for GI: 254780434 and conserved domain: cd02809
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.75 E-value=5.2e-15 Score=120.95 Aligned_cols=256 Identities=19% Similarity=0.275 Sum_probs=161.5
Q ss_pred CHHHHHHHHHHHHH-HHHHHC-CCCCCCCCCEEEECCEECCCCEEECC----C-CCCCHHH--HHHHHHCCCCEEECCCC
Q ss_conf 96788999999996-201110-46788963116888733599748534----6-8886779--88874036752410200
Q gi|254780434|r 17 DPEIAHHLSIVALK-SGLLSF-FPVHSDPRLNTKVAGISLSNPLGMAA----G-YDKNAEV--PIELLKLGFGFVEIGTV 87 (362)
Q Consensus 17 ~pe~ah~~~~~~~~-~~~~~~-~~~~~~~~L~~~~~Gl~~~nPiglAa----G-~dk~~~~--~~~l~~~G~G~v~~kti 87 (362)
T Consensus 24 ~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~l~~p~GE~~~AraA~~~gi~~~lSt-- 101 (299)
T cd02809 24 GDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLST-- 101 (299)
T ss_pred CCCHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEECCCCCCCCEEECCHHHHCCCCCCHHHHHHHHHHHHCCCEECCC--
T ss_conf 744999999999983647740134887788766678976889768885220125678726999999997056431137--
Q ss_pred CCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 13687899886268842555410000247777788999876410001210001104542467887765554206755269
Q gi|254780434|r 88 TPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYF 167 (362)
Q Consensus 88 t~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~i 167 (362)
T Consensus 102 -------------------------~--ss~slEei~~~~----~-~~~wfQLY~~~-d~~~~~~li~rA~~a--G~~al 146 (299)
T cd02809 102 -------------------------V--STTSLEEVAAAA----P-GPRWFQLYVPR-DREITEDLLRRAEAA--GYKAL 146 (299)
T ss_pred -------------------------C--CCCCHHHHHHHC----C-CCEEEEEECCC-CHHHHHHHHHHHHHC--CCCEE
T ss_conf -------------------------6--656689999744----8-98467764369-999999999999985--99989
Q ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--CCCCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 830333653221100002343211112244455655312688517865--057777488899999876449829998066
Q gi|254780434|r 168 TINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK--ISPDLSEEELDDIAVEVLSHKVEGIIVSNT 245 (362)
Q Consensus 168 EiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK--LsPd~~~~~i~~ia~~a~~~g~dGiv~~NT 245 (362)
T Consensus 147 ~lTvD~p~~g-~R---------------~~w~~i~~l~~~~~~p~i~KGi~~~--------~DA~~a~~~G~dgI~VSNH 202 (299)
T cd02809 147 VLTVDTPVLG-RR---------------LTWDDLAWLRSQWKGPLILKGILTP--------EDALRAVDAGADGIVVSNH 202 (299)
T ss_pred EEECCCCCCC-CC---------------CCHHHHHHHHHHCCCCEEEECCCCH--------HHHHHHHHCCCCEEEECCC
T ss_conf 9970589878-87---------------9999999999866998799727889--------9999999859988997288
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC---
Q ss_conf 55532345775446322113564542468999999974089748999678899999999998399975452787706---
Q gi|254780434|r 246 TLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYE--- 322 (362)
Q Consensus 246 ~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~--- 322 (362)
T Consensus 203 G----------GRqlD~-------~p~~i~~L~~i~~~v~~~~~v~~DgGvR~G~Dv~KAlaLGA~~V~iGRp~l~~l~~ 265 (299)
T cd02809 203 G----------GRQLDG-------APATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAA 265 (299)
T ss_pred C----------CCCCCC-------CCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHH
T ss_conf 7----------333688-------87789999999998546728997188475368999997699889877899999885
Q ss_pred -CH----HHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf -97----89999999999999983899778961
Q gi|254780434|r 323 -GI----SLPKRIIQGLSDFLNKENEVNFENIR 350 (362)
Q Consensus 323 -Gp----~~~~~I~~~L~~~l~~~G~~si~e~i 350 (362)
T Consensus 266 ~G~~Gv~~~~~~l~~El~~~M~l~G~~~i~~l~ 298 (299)
T cd02809 266 GGEAGVAHVLEILRDELERAMALLGCASLADLD 298 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 449999999999999999999984899877779