HHsearch alignment for GI: 254780434 and conserved domain: cd02809

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=96.34  E-value=0.092  Score=31.66  Aligned_cols=84  Identities=20%  Similarity=0.201  Sum_probs=60.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf             17865057777488899999876449829998066555323457754463221135645424689999999740897489
Q gi|254780434|r  211 PIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAI  290 (362)
Q Consensus       211 Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~I  290 (362)
T Consensus       117 ~~wfQLY~~~d~~~~~~li~rA~~aG~~al~lTv---D~-----p~~--------g~---R~~w~~i~~l~~~~~--~p~  175 (299)
T cd02809         117 PRWFQLYVPRDREITEDLLRRAEAAGYKALVLTV---DT-----PVL--------GR---RLTWDDLAWLRSQWK--GPL  175 (299)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC---CC-----CCC--------CC---CCCHHHHHHHHHHCC--CCE
T ss_conf             8467764369999999999999985999899970---58-----987--------88---799999999998669--987


Q ss_pred             EEECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf             99678899999999998399975452
Q gi|254780434|r  291 IGTGGISSTKDALDKIMAGANLIQLY  316 (362)
Q Consensus       291 Ig~GGI~s~~Da~e~l~aGAs~VQi~  316 (362)
T Consensus       176 i~-KGi~~~~DA~~a~~~G~dgI~VS  200 (299)
T cd02809         176 IL-KGILTPEDALRAVDAGADGIVVS  200 (299)
T ss_pred             EE-ECCCCHHHHHHHHHCCCCEEEEC
T ss_conf             99-72788999999998599889972