HHsearch alignment for GI: 254780434 and conserved domain: cd02809
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=96.34 E-value=0.092 Score=31.66 Aligned_cols=84 Identities=20% Similarity=0.201 Sum_probs=60.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 17865057777488899999876449829998066555323457754463221135645424689999999740897489
Q gi|254780434|r 211 PIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAI 290 (362)
Q Consensus 211 Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~I 290 (362)
T Consensus 117 ~~wfQLY~~~d~~~~~~li~rA~~aG~~al~lTv---D~-----p~~--------g~---R~~w~~i~~l~~~~~--~p~ 175 (299)
T cd02809 117 PRWFQLYVPRDREITEDLLRRAEAAGYKALVLTV---DT-----PVL--------GR---RLTWDDLAWLRSQWK--GPL 175 (299)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC---CC-----CCC--------CC---CCCHHHHHHHHHHCC--CCE
T ss_conf 8467764369999999999999985999899970---58-----987--------88---799999999998669--987
Q ss_pred EEECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 99678899999999998399975452
Q gi|254780434|r 291 IGTGGISSTKDALDKIMAGANLIQLY 316 (362)
Q Consensus 291 Ig~GGI~s~~Da~e~l~aGAs~VQi~ 316 (362)
T Consensus 176 i~-KGi~~~~DA~~a~~~G~dgI~VS 200 (299)
T cd02809 176 IL-KGILTPEDALRAVDAGADGIVVS 200 (299)
T ss_pred EE-ECCCCHHHHHHHHHCCCCEEEEC
T ss_conf 99-72788999999998599889972