HHsearch alignment for GI: 254780434 and conserved domain: cd02932
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.50 E-value=6.9e-12 Score=99.93 Aligned_cols=257 Identities=17% Similarity=0.159 Sum_probs=148.8
Q ss_pred EEEECCEECCCCEEECC--------CCCC--CHHHHHHHHHCCCCEEECCCCCCCCCC-CCCC-CCEEEEECCCCCEEEC
Q ss_conf 16888733599748534--------6888--677988874036752410200136878-9988-6268842555410000
Q gi|254780434|r 46 NTKVAGISLSNPLGMAA--------GYDK--NAEVPIELLKLGFGFVEIGTVTPHPQA-GNPR-PRVFRLTKDRAIINKL 113 (362)
Q Consensus 46 ~~~~~Gl~~~nPiglAa--------G~dk--~~~~~~~l~~~G~G~v~~ktit~~p~~-GNp~-PR~~r~~~~~~iiN~~ 113 (362)
T Consensus 4 Pi~ig~~~l~NRiv~apm~~~~~~dG~pt~~~~~yy~~rA~gG~GlIite~~~V~~~g~~~~~~~gi~~---d~-~i--- 76 (336)
T cd02932 4 PLTLRGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWN---DE-QI--- 76 (336)
T ss_pred CEEECCEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCEEECCCCCCCCCCCCCCH---HH-HH---
T ss_conf 825899988885286875768188998999999999999759973899745586612056998656567---99-99---
Q ss_pred CCCCCCHHHHHHHHHHHH--------------------------------HCCCCCCEEECCC--------CC----HHH
Q ss_conf 247777788999876410--------------------------------0012100011045--------42----467
Q gi|254780434|r 114 GFNNAGYHTVFSRLSKIQ--------------------------------PTSPIGINLGANK--------DS----KDF 149 (362)
Q Consensus 114 Gl~N~G~~~~~~~l~~~~--------------------------------~~~pi~vsI~~~~--------~s----~~~ 149 (362)
T Consensus 77 ----~~~~~l~~avh~~G~~i~~QL~H~Gr~a~~~~~~~~~~~~~~~~~~~~~~~apS~v~~~~~~~~pr~mt~~eI~~i 152 (336)
T cd02932 77 ----EALKRIVDFIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELTREEIAEV 152 (336)
T ss_pred ----HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf ----9999999999866987998622466432345753356777764357985057887766779998856899999999
Q ss_pred HHHHHHHHHHHC-CCCCEEEEEC---------CCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 887765554206-7552698303---------33653--22110000234321111224445565531268851786505
Q gi|254780434|r 150 ILDYVSGIRLFF-TIASYFTINI---------SSPNT--PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKIS 217 (362)
Q Consensus 150 ~~dy~~~~~~~~-~~aD~iEiNi---------SCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLs 217 (362)
T Consensus 153 i~~f~~AA~rA~~AGfDGVEIH~ahGYLl~qFLsp~~N~RtDeYGGs~enR~Rf~~Eii~aVr~---~vg~d~~vgvRis 229 (336)
T cd02932 153 VDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRA---VWPEDKPLFVRIS 229 (336)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCEEEEEC
T ss_conf 9999999999998399999863137479998369411677786799789998899999999999---8399887068964
Q ss_pred CC------CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 77------774888999998764498299980665553234577544632211356454246899999997408974899
Q gi|254780434|r 218 PD------LSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAII 291 (362)
Q Consensus 218 Pd------~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~II 291 (362)
T Consensus 230 ~~d~~~~g~~~~e~~~~a~~l~~~gvd~i~vs~G--~~~~--~~~~~~------~~~---~~~~~a~~ik~~~--~ipvi 294 (336)
T cd02932 230 ATDWVEGGWDLEDSVELAKALKELGVDLIDVSSG--GNSP--AQKIPV------GPG---YQVPFAERIRQEA--GIPVI 294 (336)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC--CCCC--CCCCCC------CCC---CCHHHHHHHHHHC--CCCEE
T ss_conf 5235789989999999999999759978995589--8776--666777------864---2679999999878--98399
Q ss_pred EECCCCCHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHH
Q ss_conf 967889999999999839-99754527877069789999999
Q gi|254780434|r 292 GTGGISSTKDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQ 332 (362)
Q Consensus 292 g~GGI~s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~ 332 (362)
T Consensus 295 ~~G~i~~p~~ae~~l~~G~~DlV~~gR~~iad-Pdlp~kaAa 335 (336)
T cd02932 295 AVGLITDPEQAEAILESGRADLVALGRELLRN-PYWPLHAAA 335 (336)
T ss_pred EECCCCCHHHHHHHHHCCCCEEHHHHHHHHHC-CCHHHHHHC
T ss_conf 97998999999999987994006867999979-339999867