HHsearch alignment for GI: 254780434 and conserved domain: cd04727
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=95.50 E-value=0.022 Score=35.84 Aligned_cols=71 Identities=13% Similarity=0.189 Sum_probs=48.3
Q ss_pred HHHHHHHHHHCCCCEE--EEEECCCCCHHHHHHHHHCCCCEEEECHHHHC------------------CCHHHHHHHHHH
Q ss_conf 8999999974089748--99967889999999999839997545278770------------------697899999999
Q gi|254780434|r 274 TIALAKIRQRVGPKIA--IIGTGGISSTKDALDKIMAGANLIQLYSAMIY------------------EGISLPKRIIQG 333 (362)
Q Consensus 274 l~~i~~i~~~~~~~i~--IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~------------------~Gp~~~~~I~~~ 333 (362)
T Consensus 183 ~elv~~v~~~g--rLPVvnFaAGGiATPADAALmMqLG~dGVFVGSGIFKS~dP~krA~AIV~Atthy~dp~~laevS~~ 260 (283)
T cd04727 183 YELVKETAKLG--RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHYDDPEILAEVSEG 260 (283)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 89999999978--9763664267858837799999728987887765457899999999999998465889999999704
Q ss_pred HHHHHHHCCCCCH
Q ss_conf 9999998389977
Q gi|254780434|r 334 LSDFLNKENEVNF 346 (362)
Q Consensus 334 L~~~l~~~G~~si 346 (362)
T Consensus 261 LgeaM~Gi~i~~l 273 (283)
T cd04727 261 LGEAMVGIDIASL 273 (283)
T ss_pred CCCCCCCCCHHHC
T ss_conf 6646788881228