HHsearch alignment for GI: 254780434 and conserved domain: cd04729

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.05  E-value=9e-05  Score=51.96  Aligned_cols=128  Identities=20%  Similarity=0.209  Sum_probs=81.4

Q ss_pred             HCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf             06755269830333653221100002343211112244455655312688517865057777488899999876449829
Q gi|254780434|r  160 FFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEG  239 (362)
Q Consensus       160 ~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dG  239 (362)
T Consensus        89 ~~aGadiIA~DaT~------R~RP~g~~l~~~i~~i~~~~---------~~l~MAD~s---t---~ee-~~~A~~~G~D~  146 (219)
T cd04729          89 AAAGADIIALDATD------RPRPDGETLAELIKRIHEEY---------NCLLMADIS---T---LEE-ALNAAKLGFDI  146 (219)
T ss_pred             HHCCCCEEEEECCC------CCCCCCCCHHHHHHHHHHHH---------CCEEEEECC---C---HHH-HHHHHHCCCCE
T ss_conf             98599999994678------87989978999999999986---------977887548---8---999-99999849989


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf             99806655532345775446322113564542468999999974089748999678899999999998399975452787
Q gi|254780434|r  240 IIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAM  319 (362)
Q Consensus       240 iv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tal  319 (362)
T Consensus       147 vg---TTL~--GYT~~t----------~~~~~PD~~lv~~l~~~~--~~pvIaEGri~tPe~a~~a~~~GA~aVVVGsAI  209 (219)
T cd04729         147 IG---TTLS--GYTEET----------AKTEDPDFELLKELRKAL--GIPVIAEGRINSPEQAAKALELGADAVVVGSAI  209 (219)
T ss_pred             EE---CCCC--CCCCCC----------CCCCCCCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf             97---0214--567787----------889998789999999975--993997069899999999998399899989543


Q ss_pred             HCCCHHHHH
Q ss_conf             706978999
Q gi|254780434|r  320 IYEGISLPK  328 (362)
Q Consensus       320 i~~Gp~~~~  328 (362)
T Consensus       210 -Tr-P~~IT  216 (219)
T cd04729         210 -TR-PEHIT  216 (219)
T ss_pred             -CC-HHHHH
T ss_conf             -88-89986