HHsearch alignment for GI: 254780434 and conserved domain: cd04729
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.05 E-value=9e-05 Score=51.96 Aligned_cols=128 Identities=20% Similarity=0.209 Sum_probs=81.4
Q ss_pred HCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 06755269830333653221100002343211112244455655312688517865057777488899999876449829
Q gi|254780434|r 160 FFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEG 239 (362)
Q Consensus 160 ~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dG 239 (362)
T Consensus 89 ~~aGadiIA~DaT~------R~RP~g~~l~~~i~~i~~~~---------~~l~MAD~s---t---~ee-~~~A~~~G~D~ 146 (219)
T cd04729 89 AAAGADIIALDATD------RPRPDGETLAELIKRIHEEY---------NCLLMADIS---T---LEE-ALNAAKLGFDI 146 (219)
T ss_pred HHCCCCEEEEECCC------CCCCCCCCHHHHHHHHHHHH---------CCEEEEECC---C---HHH-HHHHHHCCCCE
T ss_conf 98599999994678------87989978999999999986---------977887548---8---999-99999849989
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf 99806655532345775446322113564542468999999974089748999678899999999998399975452787
Q gi|254780434|r 240 IIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAM 319 (362)
Q Consensus 240 iv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tal 319 (362)
T Consensus 147 vg---TTL~--GYT~~t----------~~~~~PD~~lv~~l~~~~--~~pvIaEGri~tPe~a~~a~~~GA~aVVVGsAI 209 (219)
T cd04729 147 IG---TTLS--GYTEET----------AKTEDPDFELLKELRKAL--GIPVIAEGRINSPEQAAKALELGADAVVVGSAI 209 (219)
T ss_pred EE---CCCC--CCCCCC----------CCCCCCCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 97---0214--567787----------889998789999999975--993997069899999999998399899989543
Q ss_pred HCCCHHHHH
Q ss_conf 706978999
Q gi|254780434|r 320 IYEGISLPK 328 (362)
Q Consensus 320 i~~Gp~~~~ 328 (362)
T Consensus 210 -Tr-P~~IT 216 (219)
T cd04729 210 -TR-PEHIT 216 (219)
T ss_pred -CC-HHHHH
T ss_conf -88-89986