HHsearch alignment for GI: 254780434 and conserved domain: cd04730

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.17  E-value=4.2e-09  Score=81.16  Aligned_cols=185  Identities=15%  Similarity=0.248  Sum_probs=114.3

Q ss_pred             CCCEEECCCCC--CCHHHHHHHHHCC-CCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             99748534688--8677988874036-75241020013687899886268842555410000247777788999876410
Q gi|254780434|r   55 SNPLGMAAGYD--KNAEVPIELLKLG-FGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ  131 (362)
Q Consensus        55 ~nPiglAaG~d--k~~~~~~~l~~~G-~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~  131 (362)
T Consensus         2 ~~PIi-~a~M~~vs~~~LaaAvs~aGglG~l~~~~~-------------------------------~~~~l~~~i~~~~   49 (236)
T cd04730           2 RYPII-QAPMAGVSTPELAAAVSNAGGLGFIGAGYL-------------------------------TPEALRAEIRKIR   49 (236)
T ss_pred             CCCEE-CCCCCCCCCHHHHHHHHHCCCEEEECCCCC-------------------------------CHHHHHHHHHHHH
T ss_conf             74868-788778786999999996898558578889-------------------------------9999999999999


Q ss_pred             H--CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             0--01210001104542467887765554206755269830333653221100002343211112244455655312688
Q gi|254780434|r  132 P--TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKF  209 (362)
Q Consensus       132 ~--~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~  209 (362)
T Consensus        50 ~~~~~pfgvnl~~~~~~-~~~~~~~~~~~~~--~v~~v~~~~g-----------~p~---~~v~~l~~----------~g  102 (236)
T cd04730          50 ALTDKPFGVNLLVPSSN-PDFEALLEVALEE--GVPVVSFSFG-----------PPA---EVVERLKA----------AG  102 (236)
T ss_pred             HHCCCCEEECCCCCCCC-CCHHHHHHHHHHC--CCCEEEECCC-----------CCH---HHHHHHHH----------CC
T ss_conf             74699724433246776-3689999999976--9999998798-----------978---99999998----------29


Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf             51786505777748889999987644982999806655532345775446322113564542468999999974089748
Q gi|254780434|r  210 VPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIA  289 (362)
Q Consensus       210 ~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~  289 (362)
T Consensus       103 ~~v~~~v~---s----~~~A~~a~~~GaD~iv~qG~--------------eAGGH~g~~~-~~~~~lv~~v~~~~--~ip  158 (236)
T cd04730         103 IKVIPTVT---S----VEEARKAEAAGADALVAQGA--------------EAGGHRGTFD-IGTFALVPEVRDAV--DIP  158 (236)
T ss_pred             CEEEEECC---C----HHHHHHHHHCCCCEEEEECC--------------CCCCCCCCCC-CCHHHHHHHHHHHH--CCC
T ss_conf             98999589---8----99999999818998999777--------------7777889875-55677999999982--986


Q ss_pred             EEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf             999678899999999998399975452787706
Q gi|254780434|r  290 IIGTGGISSTKDALDKIMAGANLIQLYSAMIYE  322 (362)
Q Consensus       290 IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~  322 (362)
T Consensus       159 viaAGGI~~g~~i~aal~lGA~gV~~GTrfl~t  191 (236)
T cd04730         159 VIAAGGIADGRGIAAALALGADGVQMGTRFLAT  191 (236)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCEEEECCHHHHC
T ss_conf             896546277899999998089799955385708