HHsearch alignment for GI: 254780434 and conserved domain: cd04730
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.17 E-value=4.2e-09 Score=81.16 Aligned_cols=185 Identities=15% Similarity=0.248 Sum_probs=114.3
Q ss_pred CCCEEECCCCC--CCHHHHHHHHHCC-CCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99748534688--8677988874036-75241020013687899886268842555410000247777788999876410
Q gi|254780434|r 55 SNPLGMAAGYD--KNAEVPIELLKLG-FGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ 131 (362)
Q Consensus 55 ~nPiglAaG~d--k~~~~~~~l~~~G-~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~ 131 (362)
T Consensus 2 ~~PIi-~a~M~~vs~~~LaaAvs~aGglG~l~~~~~-------------------------------~~~~l~~~i~~~~ 49 (236)
T cd04730 2 RYPII-QAPMAGVSTPELAAAVSNAGGLGFIGAGYL-------------------------------TPEALRAEIRKIR 49 (236)
T ss_pred CCCEE-CCCCCCCCCHHHHHHHHHCCCEEEECCCCC-------------------------------CHHHHHHHHHHHH
T ss_conf 74868-788778786999999996898558578889-------------------------------9999999999999
Q ss_pred H--CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 0--01210001104542467887765554206755269830333653221100002343211112244455655312688
Q gi|254780434|r 132 P--TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKF 209 (362)
Q Consensus 132 ~--~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~ 209 (362)
T Consensus 50 ~~~~~pfgvnl~~~~~~-~~~~~~~~~~~~~--~v~~v~~~~g-----------~p~---~~v~~l~~----------~g 102 (236)
T cd04730 50 ALTDKPFGVNLLVPSSN-PDFEALLEVALEE--GVPVVSFSFG-----------PPA---EVVERLKA----------AG 102 (236)
T ss_pred HHCCCCEEECCCCCCCC-CCHHHHHHHHHHC--CCCEEEECCC-----------CCH---HHHHHHHH----------CC
T ss_conf 74699724433246776-3689999999976--9999998798-----------978---99999998----------29
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 51786505777748889999987644982999806655532345775446322113564542468999999974089748
Q gi|254780434|r 210 VPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIA 289 (362)
Q Consensus 210 ~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~ 289 (362)
T Consensus 103 ~~v~~~v~---s----~~~A~~a~~~GaD~iv~qG~--------------eAGGH~g~~~-~~~~~lv~~v~~~~--~ip 158 (236)
T cd04730 103 IKVIPTVT---S----VEEARKAEAAGADALVAQGA--------------EAGGHRGTFD-IGTFALVPEVRDAV--DIP 158 (236)
T ss_pred CEEEEECC---C----HHHHHHHHHCCCCEEEEECC--------------CCCCCCCCCC-CCHHHHHHHHHHHH--CCC
T ss_conf 98999589---8----99999999818998999777--------------7777889875-55677999999982--986
Q ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 999678899999999998399975452787706
Q gi|254780434|r 290 IIGTGGISSTKDALDKIMAGANLIQLYSAMIYE 322 (362)
Q Consensus 290 IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~ 322 (362)
T Consensus 159 viaAGGI~~g~~i~aal~lGA~gV~~GTrfl~t 191 (236)
T cd04730 159 VIAAGGIADGRGIAAALALGADGVQMGTRFLAT 191 (236)
T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEECCHHHHC
T ss_conf 896546277899999998089799955385708