HHsearch alignment for GI: 254780434 and conserved domain: cd04739
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=100.00 E-value=0 Score=482.43 Aligned_cols=295 Identities=20% Similarity=0.254 Sum_probs=240.7
Q ss_pred CCEEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCC------CCCCCCCCCEEEEECCCCCEEECCCC
Q ss_conf 31168887335997485346-888677988874036752410200136------87899886268842555410000247
Q gi|254780434|r 44 RLNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPH------PQAGNPRPRVFRLTKDRAIINKLGFN 116 (362)
Q Consensus 44 ~L~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~------p~~GNp~PR~~r~~~~~~iiN~~Gl~ 116 (362)
T Consensus 1 DLst~~~Gl~l~NPi~~ASg~~~~~~e~~~~~~~~G~Gavv~KSi~~e~i~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~ 80 (325)
T cd04739 1 DLSTTYLGLSLKNPLVASASPLSRNLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRY 80 (325)
T ss_pred CCCEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
T ss_conf 98579899967998885652568999999999985967999795674234567788898888998871121403321455
Q ss_pred CCCHHHHHHHHHHHHH--CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC-CCCCHHHHHHHHH
Q ss_conf 7777889998764100--012100011045424678877655542067552698303336532211-0000234321111
Q gi|254780434|r 117 NAGYHTVFSRLSKIQP--TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLR-SLQKKKNLERLLI 193 (362)
Q Consensus 117 N~G~~~~~~~l~~~~~--~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~-~~~~~~~l~~~l~ 193 (362)
T Consensus 81 n~g~e~~l~~i~~~~~~~~~pvI~Si~g~--s~ee~~~~a~~~~~~g--ad~lElNls~~~~~~~~~~~~~~~~~~~iv~ 156 (325)
T cd04739 81 NLGPEEYLELIRRAKRAVSIPVIASLNGV--SAGGWVDYARQIEEAG--ADALELNIYALPTDPDISGAEVEQRYLDILR 156 (325)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCC--CHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 75899999999998753598759871689--9899999999997649--9879996566788855442106889999999
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCHH
Q ss_conf 22444556553126885178650577774888999998764498299980665553234577544-63221135645424
Q gi|254780434|r 194 HVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNH-EQDGGLSGSPLFLK 272 (362)
Q Consensus 194 ~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~-~~~GGlSG~~i~~~ 272 (362)
T Consensus 157 ~V---------k~~~~~Pv~vKLsP~~~--di~~ia~aa~~~GAdgi~liNT~~~~~-id~~~~~~~~~~~lSg~~~~~~ 224 (325)
T cd04739 157 AV---------KSAVTIPVAVKLSPFFS--ALAHMAKQLDAAGADGLVLFNRFYQPD-IDLETLEVVPNLLLSSPAEIRL 224 (325)
T ss_pred HH---------HHCCCCCEEEECCCCCC--HHHHHHHHHHHCCCCEEEEECCCCCCC-CCCCCCEEECCCCCCCCCCCHH
T ss_conf 99---------86078866995399830--099999999975998899735766564-2167641536877457530068
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf 68999999974089748999678899999999998399975452787706978999999999999998389977896169
Q gi|254780434|r 273 STIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGS 352 (362)
Q Consensus 273 al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~ 352 (362)
T Consensus 225 alr~v~~~~~~~--~ipIiG~GGI~s~~Da~e~ilAGAsaVQv~TA~~~~G~~i~~~i~~eL~~~m~~~G~~si~e~~Gk 302 (325)
T cd04739 225 PLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred HHHHHHHHHCCC--CCCEEEECCCCCHHHHHHHHHCCCCHHHEEHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHCCC
T ss_conf 899999996468--989888889598999999998098876143234641837999999999999998399979996273
Q ss_pred CCHH
Q ss_conf 7526
Q gi|254780434|r 353 YTEY 356 (362)
Q Consensus 353 ~~~~ 356 (362)
T Consensus 303 l~~~ 306 (325)
T cd04739 303 MSQK 306 (325)
T ss_pred CCCC
T ss_conf 4545