HHsearch alignment for GI: 254780434 and conserved domain: cd04740

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=100.00  E-value=0  Score=552.56  Aligned_cols=287  Identities=25%  Similarity=0.387  Sum_probs=250.1

Q ss_pred             EEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHH
Q ss_conf             168887335997485346-8886779888740367524102001368789988626884255541000024777778899
Q gi|254780434|r   46 NTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVF  124 (362)
Q Consensus        46 ~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~  124 (362)
T Consensus         1 sv~~~Gl~~~nPi~lAAG~~~~~~~~~~~~~~~g~G~v~~~Tvt~~p~~Gn~~PR~~~~~--~~~iN~~G~~n~G~~~~~   78 (296)
T cd04740           1 SVELAGLRLKNPVILASGTFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETP--GGMLNAIGLQNPGVEAFL   78 (296)
T ss_pred             CEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEECC--HHHHHHCCCCCCCHHHHH
T ss_conf             968898857998787867899839999998858963899380470314589998178154--116765237888648999


Q ss_pred             HHHHHHH--HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCC--CCCCCHHHHHHHHHHHHHHH
Q ss_conf             9876410--00121000110454246788776555420675-5269830333653221--10000234321111224445
Q gi|254780434|r  125 SRLSKIQ--PTSPIGINLGANKDSKDFILDYVSGIRLFFTI-ASYFTINISSPNTPGL--RSLQKKKNLERLLIHVMQTR  199 (362)
Q Consensus       125 ~~l~~~~--~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~-aD~iEiNiSCPNt~g~--~~~~~~~~l~~~l~~v~~~~  199 (362)
T Consensus        79 ~~l~~~~~~~~~pvi~si~~~-----~~~d~~~~~~~~~~~gad~ielNiScPNt~~~g~~~~~~~~~~~~i~~~vk~--  151 (296)
T cd04740          79 EELLPWLREFGTPVIASIAGS-----TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKK--  151 (296)
T ss_pred             HHHHHHHCCCCCEEEEEECCC-----CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHH--
T ss_conf             878986356897189981689-----8789999999988648988999788998676367757499999999999986--


Q ss_pred             HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             5655312688517865057777488899999876449829998066555323---4577544632211356454246899
Q gi|254780434|r  200 EEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKG---VQCSDNHEQDGGLSGSPLFLKSTIA  276 (362)
Q Consensus       200 ~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~---~~~~~~~~~~GGlSG~~i~~~al~~  276 (362)
T Consensus       152 -------~~~~Pi~vKlsP~~~--~i~~ia~~~~~~g~dgiv~~NT~~~~~id~~~~~p~l~~~~GGlSG~~l~~~al~~  222 (296)
T cd04740         152 -------ATDVPVIVKLTPNVT--DIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRM  222 (296)
T ss_pred             -------CCCCCEEEECCCCCC--HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             -------048966997189800--09999999997699889997467876636444675524557876867788999999


Q ss_pred             HHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
Q ss_conf             99999740897489996788999999999983999754527877069789999999999999983899778961697
Q gi|254780434|r  277 LAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSY  353 (362)
Q Consensus       277 i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~~  353 (362)
T Consensus       223 v~~~~~~~--~ipIig~GGI~s~~da~e~i~aGAs~VQi~Ta-i~~Gp~~i~~i~~~L~~~l~~~G~~si~e~~G~a  296 (296)
T cd04740         223 VYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTA-NFVDPEAFKEIIEGLEAYLDEEGIKSIEELVGLA  296 (296)
T ss_pred             HHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH-HHCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCC
T ss_conf             99998545--88879757979999999999839988872366-7429279999999999999983999899950359