HHsearch alignment for GI: 254780434 and conserved domain: cd04740
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=100.00 E-value=0 Score=552.56 Aligned_cols=287 Identities=25% Similarity=0.387 Sum_probs=250.1
Q ss_pred EEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHH
Q ss_conf 168887335997485346-8886779888740367524102001368789988626884255541000024777778899
Q gi|254780434|r 46 NTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVF 124 (362)
Q Consensus 46 ~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~ 124 (362)
T Consensus 1 sv~~~Gl~~~nPi~lAAG~~~~~~~~~~~~~~~g~G~v~~~Tvt~~p~~Gn~~PR~~~~~--~~~iN~~G~~n~G~~~~~ 78 (296)
T cd04740 1 SVELAGLRLKNPVILASGTFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETP--GGMLNAIGLQNPGVEAFL 78 (296)
T ss_pred CEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEECC--HHHHHHCCCCCCCHHHHH
T ss_conf 968898857998787867899839999998858963899380470314589998178154--116765237888648999
Q ss_pred HHHHHHH--HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCC--CCCCCHHHHHHHHHHHHHHH
Q ss_conf 9876410--00121000110454246788776555420675-5269830333653221--10000234321111224445
Q gi|254780434|r 125 SRLSKIQ--PTSPIGINLGANKDSKDFILDYVSGIRLFFTI-ASYFTINISSPNTPGL--RSLQKKKNLERLLIHVMQTR 199 (362)
Q Consensus 125 ~~l~~~~--~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~-aD~iEiNiSCPNt~g~--~~~~~~~~l~~~l~~v~~~~ 199 (362)
T Consensus 79 ~~l~~~~~~~~~pvi~si~~~-----~~~d~~~~~~~~~~~gad~ielNiScPNt~~~g~~~~~~~~~~~~i~~~vk~-- 151 (296)
T cd04740 79 EELLPWLREFGTPVIASIAGS-----TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKK-- 151 (296)
T ss_pred HHHHHHHCCCCCEEEEEECCC-----CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHH--
T ss_conf 878986356897189981689-----8789999999988648988999788998676367757499999999999986--
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 5655312688517865057777488899999876449829998066555323---4577544632211356454246899
Q gi|254780434|r 200 EEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKG---VQCSDNHEQDGGLSGSPLFLKSTIA 276 (362)
Q Consensus 200 ~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~---~~~~~~~~~~GGlSG~~i~~~al~~ 276 (362)
T Consensus 152 -------~~~~Pi~vKlsP~~~--~i~~ia~~~~~~g~dgiv~~NT~~~~~id~~~~~p~l~~~~GGlSG~~l~~~al~~ 222 (296)
T cd04740 152 -------ATDVPVIVKLTPNVT--DIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRM 222 (296)
T ss_pred -------CCCCCEEEECCCCCC--HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf -------048966997189800--09999999997699889997467876636444675524557876867788999999
Q ss_pred HHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
Q ss_conf 99999740897489996788999999999983999754527877069789999999999999983899778961697
Q gi|254780434|r 277 LAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSY 353 (362)
Q Consensus 277 i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~~ 353 (362)
T Consensus 223 v~~~~~~~--~ipIig~GGI~s~~da~e~i~aGAs~VQi~Ta-i~~Gp~~i~~i~~~L~~~l~~~G~~si~e~~G~a 296 (296)
T cd04740 223 VYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTA-NFVDPEAFKEIIEGLEAYLDEEGIKSIEELVGLA 296 (296)
T ss_pred HHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH-HHCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCC
T ss_conf 99998545--88879757979999999999839988872366-7429279999999999999983999899950359