HHsearch alignment for GI: 254780434 and conserved domain: cd04743
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.66 E-value=1.4e-06 Score=64.07 Aligned_cols=155 Identities=17% Similarity=0.199 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHH---CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 77889998764100---012100011045424678877655542067552698303336532211000023432111122
Q gi|254780434|r 119 GYHTVFSRLSKIQP---TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHV 195 (362)
Q Consensus 119 G~~~~~~~l~~~~~---~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v 195 (362)
T Consensus 38 ~~e~lr~eI~k~r~~ltdkPFGVNi~~~~p~~-~~~~~~~vi~e~k--v~vv~~agG~P-----------~~~~~----L 99 (320)
T cd04743 38 RGEQVKALLEETAELLGDKPWGVGILGFVDTE-LRAAQLAVVRAIK--PTFALIAGGRP-----------DQARA----L 99 (320)
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC-CHHHHHHHHHCCC--CCEEEECCCCC-----------HHHHH----H
T ss_conf 98999999999999825998445575138872-2578888886169--98999568890-----------78799----9
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC----CCCCH
Q ss_conf 44455655312688517865057777488899999876449829998066555323457754463221135----64542
Q gi|254780434|r 196 MQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSG----SPLFL 271 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG----~~i~~ 271 (362)
T Consensus 100 k----------~aGikvi~~V~---S----v~lAk~~~~~GaDavIaEG~--------------EaGGHiG~~~Tm~Lvp 148 (320)
T cd04743 100 E----------AIGISTYLHVP---S----PGLLKQFLENGARKFIFEGR--------------ECGGHVGPRSSFVLWE 148 (320)
T ss_pred H----------HCCCEEEEECC---C----HHHHHHHHHCCCCEEEEECC--------------CCCCCCCCCCHHHHHH
T ss_conf 9----------86997999779---9----99999999849999999574--------------5767767530134059
Q ss_pred HHHHHHHHHH-HHCCCCEEEEEECCCCCHHHHHHHHHCCCC--------EEEECHHHHCC
Q ss_conf 4689999999-740897489996788999999999983999--------75452787706
Q gi|254780434|r 272 KSTIALAKIR-QRVGPKIAIIGTGGISSTKDALDKIMAGAN--------LIQLYSAMIYE 322 (362)
Q Consensus 272 ~al~~i~~i~-~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs--------~VQi~Tali~~ 322 (362)
T Consensus 149 qvvdav~~~~~~~~~~~IPViaAGGI~DGRg~aaa~aLgA~~a~~g~~~GVqmGTrfl~t 208 (320)
T cd04743 149 SAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFT 208 (320)
T ss_pred HHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCHHHCCCCCEEEEECHHHCC
T ss_conf 898898603566556787489976745618999999838842231562227860441101