Query gi|254780434|ref|YP_003064847.1| dihydroorotate dehydrogenase 2 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 362
No_of_seqs 154 out of 2362
Neff 6.7
Searched_HMMs 39220
Date Sun May 29 18:31:00 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780434.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01036 pyrD_sub2 dihydrooro 100.0 0 0 773.3 23.7 349 6-354 1-369 (370)
2 PRK05286 dihydroorotate dehydr 100.0 0 0 711.2 28.0 330 4-338 1-336 (336)
3 cd04738 DHOD_2_like Dihydrooro 100.0 0 0 695.0 26.4 321 10-334 1-327 (327)
4 KOG1436 consensus 100.0 0 0 637.3 22.1 347 5-353 42-397 (398)
5 COG0167 PyrD Dihydroorotate de 100.0 0 0 606.8 25.3 300 44-355 1-309 (310)
6 TIGR01037 pyrD_sub1_fam dihydr 100.0 0 0 579.8 18.8 292 45-354 1-308 (308)
7 PRK07259 dihydroorotate dehydr 100.0 0 0 564.7 25.7 291 44-355 1-301 (301)
8 PRK02506 dihydroorotate dehydr 100.0 0 0 560.7 25.2 295 44-352 1-304 (308)
9 cd04740 DHOD_1B_like Dihydroor 100.0 0 0 552.6 24.2 287 46-353 1-296 (296)
10 cd04741 DHOD_1A_like Dihydroor 100.0 0 0 515.9 23.2 278 47-337 1-293 (294)
11 PRK08318 dihydropyrimidine deh 100.0 0 0 509.2 27.2 298 43-357 2-323 (413)
12 pfam01180 DHO_dh Dihydroorotat 100.0 0 0 503.6 21.8 277 45-338 2-290 (290)
13 cd02810 DHOD_DHPD_FMN Dihydroo 100.0 0 0 501.6 22.9 273 47-333 1-289 (289)
14 cd02940 DHPD_FMN Dihydropyrimi 100.0 0 0 497.2 21.2 274 44-334 1-299 (299)
15 cd04739 DHOD_like Dihydroorota 100.0 0 0 482.4 25.2 295 44-356 1-306 (325)
16 PRK07565 dihydroorotate dehydr 100.0 0 0 471.7 26.3 292 44-354 2-306 (333)
17 KOG1799 consensus 100.0 1.4E-45 0 327.3 10.2 315 33-358 91-427 (471)
18 PRK10415 tRNA-dihydrouridine s 99.8 2.1E-16 5.4E-21 130.4 20.1 228 48-334 2-241 (321)
19 cd02811 IDI-2_FMN Isopentenyl- 99.8 3.5E-16 9E-21 128.8 19.4 263 39-350 36-325 (326)
20 pfam01070 FMN_dh FMN-dependent 99.8 5.9E-15 1.5E-19 120.6 25.1 259 18-352 18-297 (301)
21 cd02809 alpha_hydroxyacid_oxid 99.8 5.2E-15 1.3E-19 121.0 24.3 256 17-350 24-298 (299)
22 TIGR00737 nifR3_yhdG putative 99.7 2E-16 5.2E-21 130.5 15.0 234 49-334 1-255 (336)
23 cd02922 FCB2_FMN Flavocytochro 99.7 4.5E-14 1.2E-18 114.6 26.4 289 19-350 26-342 (344)
24 PRK05437 isopentenyl pyrophosp 99.7 2.4E-15 6.2E-20 123.2 18.7 259 39-354 44-336 (351)
25 cd04737 LOX_like_FMN L-Lactate 99.7 2.8E-13 7.2E-18 109.3 25.4 287 19-351 34-348 (351)
26 cd03332 LMO_FMN L-Lactate 2-mo 99.7 5.9E-13 1.5E-17 107.1 26.0 290 19-350 47-379 (383)
27 PRK11197 lldD L-lactate dehydr 99.7 2.5E-13 6.2E-18 109.7 23.7 294 19-350 32-371 (381)
28 COG0042 tRNA-dihydrouridine sy 99.7 4.4E-14 1.1E-18 114.8 18.9 226 48-330 3-241 (323)
29 cd02801 DUS_like_FMN Dihydrour 99.7 1.5E-14 3.8E-19 117.9 16.1 176 124-334 45-230 (231)
30 TIGR02151 IPP_isom_2 isopenten 99.7 4.7E-15 1.2E-19 121.3 13.5 262 39-354 40-345 (349)
31 pfam01207 Dus Dihydrouridine s 99.6 3.6E-14 9.1E-19 115.3 17.1 176 123-332 43-228 (309)
32 PRK11815 tRNA-dihydrouridine s 99.6 7.4E-14 1.9E-18 113.2 15.9 179 127-334 58-250 (333)
33 PRK10550 tRNA-dihydrouridine s 99.6 1.3E-13 3.3E-18 111.5 17.1 170 131-331 60-238 (312)
34 cd04736 MDH_FMN Mandelate dehy 99.6 3E-11 7.5E-16 95.7 25.8 291 19-350 26-360 (361)
35 cd02803 OYE_like_FMN_family Ol 99.5 1.2E-11 3E-16 98.4 19.6 258 46-333 3-327 (327)
36 cd02932 OYE_YqiM_FMN Old yello 99.5 6.9E-12 1.8E-16 99.9 18.1 257 46-332 4-335 (336)
37 PRK13523 NADPH dehydrogenase N 99.5 8.9E-12 2.3E-16 99.2 17.8 258 46-338 6-326 (337)
38 COG1304 idi Isopentenyl diphos 99.5 7.9E-12 2E-16 99.5 16.8 270 35-354 44-348 (360)
39 cd04733 OYE_like_2_FMN Old yel 99.5 2.1E-11 5.3E-16 96.7 18.3 263 46-333 4-338 (338)
40 cd02911 arch_FMN Archeal FMN-b 99.5 3.1E-12 7.9E-17 102.3 14.0 215 57-323 1-227 (233)
41 cd04734 OYE_like_3_FMN Old yel 99.5 3E-11 7.7E-16 95.6 18.6 261 46-333 4-331 (343)
42 cd02930 DCR_FMN 2,4-dienoyl-Co 99.5 2.2E-11 5.7E-16 96.5 17.9 263 46-333 4-322 (353)
43 cd04735 OYE_like_4_FMN Old yel 99.4 5.8E-11 1.5E-15 93.7 17.7 259 46-334 4-330 (353)
44 pfam00724 Oxidored_FMN NADH:fl 99.4 1.1E-10 2.8E-15 91.8 18.7 266 46-333 5-332 (336)
45 KOG2335 consensus 99.4 3.2E-11 8.3E-16 95.4 15.1 190 131-351 71-277 (358)
46 cd02931 ER_like_FMN Enoate red 99.4 2.2E-10 5.5E-15 89.9 18.8 262 46-334 4-352 (382)
47 KOG0538 consensus 99.4 5.8E-10 1.5E-14 86.9 21.0 296 18-352 29-351 (363)
48 COG1902 NemA NADH:flavin oxido 99.3 8.4E-10 2.1E-14 85.9 19.9 260 46-336 9-337 (363)
49 cd04722 TIM_phosphate_binding 99.3 1.8E-10 4.6E-15 90.4 15.3 189 65-317 12-200 (200)
50 cd02929 TMADH_HD_FMN Trimethyl 99.3 5.7E-10 1.4E-14 87.0 17.1 259 46-333 11-335 (370)
51 TIGR03315 Se_ygfK putative sel 99.3 3.9E-10 9.9E-15 88.1 15.8 291 34-339 30-397 (1012)
52 cd02933 OYE_like_FMN Old yello 99.3 1.6E-09 4.1E-14 84.0 18.2 250 46-334 5-331 (338)
53 TIGR02708 L_lactate_ox L-lacta 99.3 9.7E-10 2.5E-14 85.5 16.8 284 23-356 46-361 (368)
54 pfam03060 NPD 2-nitropropane d 99.2 2.5E-10 6.5E-15 89.4 12.3 90 210-322 138-227 (330)
55 PRK09853 putative selenate red 99.2 5.3E-09 1.4E-13 80.5 18.4 290 35-339 32-410 (1032)
56 cd00381 IMPDH IMPDH: The catal 99.2 3.4E-08 8.6E-13 75.1 20.9 243 39-353 17-320 (325)
57 cd04730 NPD_like 2-Nitropropan 99.2 4.2E-09 1.1E-13 81.2 15.9 185 55-322 2-191 (236)
58 TIGR03151 enACPred_II putative 99.1 3.8E-09 9.7E-14 81.4 14.4 186 48-322 6-196 (307)
59 cd04747 OYE_like_5_FMN Old yel 99.1 1.1E-08 2.8E-13 78.3 16.2 254 46-333 4-344 (361)
60 PRK08255 salicylyl-CoA 5-hydro 99.1 1.2E-06 3.2E-11 64.5 25.3 254 46-331 407-736 (770)
61 PRK10605 N-ethylmaleimide redu 99.1 7.8E-08 2E-12 72.6 18.5 160 148-334 156-338 (362)
62 pfam00478 IMPDH IMP dehydrogen 99.1 1.6E-07 4.2E-12 70.4 20.0 128 159-320 231-359 (467)
63 KOG2333 consensus 99.0 2.9E-08 7.3E-13 75.5 13.4 202 127-358 313-527 (614)
64 COG0069 GltB Glutamate synthas 98.9 6.5E-08 1.6E-12 73.2 12.6 180 149-355 258-479 (485)
65 cd02808 GltS_FMN Glutamate syn 98.8 2E-07 5.1E-12 69.9 13.5 169 154-349 174-384 (392)
66 COG2070 Dioxygenases related t 98.8 6.3E-08 1.6E-12 73.2 10.4 90 210-321 128-218 (336)
67 pfam01645 Glu_synthase Conserv 98.8 1.9E-07 4.9E-12 70.0 12.8 147 149-322 157-308 (367)
68 PRK13597 imidazole glycerol ph 98.8 3.8E-07 9.7E-12 68.0 13.8 226 50-344 20-248 (252)
69 PRK05458 guanosine 5'-monophos 98.8 4.4E-06 1.1E-10 60.8 18.7 242 38-350 20-309 (326)
70 PRK06843 inositol-5-monophosph 98.7 1.5E-06 3.8E-11 64.0 15.7 235 40-319 26-288 (404)
71 PRK05567 inositol-5'-monophosp 98.7 5E-06 1.3E-10 60.4 18.2 128 159-319 236-363 (486)
72 PTZ00314 inosine-5'-monophosph 98.7 8.7E-06 2.2E-10 58.8 19.2 160 160-352 247-465 (499)
73 TIGR00736 nifR3_rel_arch TIM-b 98.7 1.5E-07 3.9E-12 70.6 9.8 218 62-321 2-228 (234)
74 PRK05096 guanosine 5'-monophos 98.7 2.3E-05 5.9E-10 56.0 20.6 243 39-352 25-330 (347)
75 PRK03220 consensus 98.7 1.2E-06 2.9E-11 64.7 13.4 226 50-344 20-255 (257)
76 cd04743 NPD_PKS 2-Nitropropane 98.7 1.4E-06 3.7E-11 64.1 13.4 155 119-322 38-208 (320)
77 PRK08649 inositol-5-monophosph 98.7 1.7E-06 4.4E-11 63.5 13.7 269 40-350 31-360 (368)
78 PRK02083 imidazole glycerol ph 98.6 1.9E-06 4.7E-11 63.3 13.7 225 50-344 19-250 (253)
79 PRK13129 consensus 98.6 1.7E-05 4.4E-10 56.8 18.0 228 60-339 25-266 (267)
80 PRK13115 consensus 98.6 1.4E-05 3.5E-10 57.5 17.0 220 66-340 39-266 (269)
81 PRK02145 consensus 98.6 2.9E-06 7.5E-11 62.0 13.0 226 50-344 20-254 (257)
82 PRK13125 trpA tryptophan synth 98.6 5.2E-06 1.3E-10 60.3 14.2 229 60-342 11-247 (247)
83 PRK13117 consensus 98.6 1.6E-05 4.2E-10 57.0 16.7 210 60-321 23-239 (268)
84 PRK02621 consensus 98.6 5.5E-06 1.4E-10 60.1 14.3 225 51-344 20-251 (254)
85 PRK01659 consensus 98.6 3.9E-06 1E-10 61.1 13.1 225 51-344 20-250 (252)
86 PRK00830 consensus 98.5 3.4E-06 8.6E-11 61.6 12.7 227 49-344 22-270 (273)
87 PRK01033 imidazole glycerol ph 98.5 1.5E-06 3.8E-11 64.0 10.7 198 68-325 33-235 (253)
88 PRK04281 consensus 98.5 8.8E-06 2.2E-10 58.8 14.1 226 50-344 19-251 (254)
89 cd04731 HisF The cyclase subun 98.5 6.3E-06 1.6E-10 59.8 13.3 176 123-340 62-242 (243)
90 PRK02747 consensus 98.5 6.4E-06 1.6E-10 59.7 13.3 226 50-344 19-253 (257)
91 CHL00200 trpA tryptophan synth 98.5 4.8E-05 1.2E-09 53.8 17.4 210 60-321 21-236 (263)
92 PRK05211 consensus 98.5 6.2E-06 1.6E-10 59.8 12.8 227 49-344 9-245 (248)
93 PRK13137 consensus 98.5 4.5E-05 1.1E-09 54.0 17.0 62 274-339 201-265 (266)
94 cd04728 ThiG Thiazole synthase 98.5 6.2E-05 1.6E-09 53.1 17.6 210 48-325 2-214 (248)
95 PRK13127 consensus 98.5 2.5E-05 6.3E-10 55.7 15.5 210 60-321 17-232 (262)
96 PRK13126 consensus 98.5 1.7E-05 4.3E-10 56.9 14.5 108 211-342 126-237 (237)
97 PRK13118 consensus 98.5 3.4E-05 8.8E-10 54.8 16.0 227 60-339 23-265 (269)
98 PRK13585 1-(5-phosphoribosyl)- 98.5 6.9E-06 1.8E-10 59.5 12.3 166 134-335 74-239 (240)
99 PRK13139 consensus 98.5 4.1E-05 1.1E-09 54.2 16.3 208 61-321 23-236 (254)
100 PRK13119 consensus 98.4 5.5E-05 1.4E-09 53.4 16.4 225 60-337 21-259 (261)
101 PRK13135 consensus 98.4 9.8E-05 2.5E-09 51.7 17.2 205 60-321 23-237 (267)
102 PRK13116 consensus 98.4 4.2E-05 1.1E-09 54.2 15.2 207 61-321 24-240 (278)
103 PRK13113 consensus 98.4 0.00013 3.4E-09 50.8 17.7 223 60-336 23-258 (263)
104 pfam00977 His_biosynth Histidi 98.4 1.3E-05 3.4E-10 57.5 12.4 164 122-323 63-226 (229)
105 pfam05690 ThiG Thiazole biosyn 98.4 0.00011 2.8E-09 51.4 17.1 210 48-325 1-213 (246)
106 PRK13122 consensus 98.4 4.1E-05 1.1E-09 54.2 14.5 225 57-338 7-240 (242)
107 PRK13123 consensus 98.4 9.9E-05 2.5E-09 51.7 16.3 208 61-321 22-233 (256)
108 pfam00290 Trp_syntA Tryptophan 98.4 7.3E-05 1.9E-09 52.6 15.6 210 60-321 15-230 (258)
109 PRK00208 thiG thiazole synthas 98.3 0.00021 5.4E-09 49.5 17.2 212 47-325 2-215 (256)
110 PRK00507 deoxyribose-phosphate 98.3 2.2E-05 5.5E-10 56.1 12.0 86 217-328 130-215 (221)
111 PRK13121 consensus 98.3 0.00023 5.9E-09 49.2 17.0 208 61-321 24-238 (265)
112 TIGR00742 yjbN TIM-barrel prot 98.3 8.3E-06 2.1E-10 58.9 9.3 201 127-358 48-270 (326)
113 PRK13120 consensus 98.3 0.00028 7.1E-09 48.7 16.9 209 60-321 27-242 (285)
114 PRK13111 trpA tryptophan synth 98.2 0.00022 5.5E-09 49.4 15.9 209 60-321 15-229 (256)
115 PRK13134 consensus 98.2 0.00024 6E-09 49.1 15.9 204 61-321 26-239 (257)
116 PRK13138 consensus 98.2 0.00017 4.4E-09 50.1 15.1 207 60-321 19-236 (264)
117 PRK00748 1-(5-phosphoribosyl)- 98.2 6.7E-05 1.7E-09 52.8 13.0 173 122-334 63-238 (241)
118 CHL00162 thiG thiamin biosynth 98.2 0.00058 1.5E-08 46.5 17.7 215 46-325 7-228 (267)
119 cd04732 HisA HisA. Phosphorib 98.2 2.9E-05 7.3E-10 55.3 11.0 138 160-327 92-229 (234)
120 PRK11840 bifunctional sulfur c 98.2 0.00049 1.2E-08 47.0 17.2 215 44-325 73-289 (327)
121 PRK13132 consensus 98.2 0.00019 4.9E-09 49.8 14.9 210 57-321 15-228 (246)
122 cd04724 Tryptophan_synthase_al 98.2 0.00026 6.7E-09 48.8 15.5 209 60-321 6-220 (242)
123 PRK13587 1-(5-phosphoribosyl)- 98.2 7.9E-05 2E-09 52.3 12.5 162 123-324 67-228 (234)
124 TIGR00007 TIGR00007 phosphorib 98.2 3.2E-05 8.1E-10 55.0 10.4 138 158-324 90-235 (241)
125 TIGR03572 WbuZ glycosyl amidat 98.2 5.5E-05 1.4E-09 53.4 11.4 208 50-321 19-232 (232)
126 cd00959 DeoC 2-deoxyribose-5-p 98.2 7.5E-05 1.9E-09 52.5 12.1 82 212-314 117-201 (203)
127 PRK07807 inositol-5-monophosph 98.1 7.6E-05 2E-09 52.4 11.9 128 159-319 235-362 (479)
128 PRK13114 consensus 98.1 0.00013 3.3E-09 50.9 12.8 210 60-321 19-234 (266)
129 PRK13133 consensus 98.1 0.0005 1.3E-08 46.9 15.5 213 60-321 21-244 (267)
130 COG0274 DeoC Deoxyribose-phosp 98.1 5.8E-05 1.5E-09 53.3 10.5 86 212-318 126-214 (228)
131 PRK11750 gltB glutamate syntha 98.1 5.9E-05 1.5E-09 53.2 10.6 182 149-353 950-1168(1483)
132 COG0107 HisF Imidazoleglycerol 98.1 6.4E-05 1.6E-09 53.0 10.6 228 46-344 15-252 (256)
133 PRK13140 consensus 98.1 0.00081 2.1E-08 45.5 15.8 211 60-321 20-236 (257)
134 PRK13124 consensus 98.1 0.001 2.5E-08 44.9 16.1 208 60-321 15-228 (257)
135 cd04729 NanE N-acetylmannosami 98.1 9E-05 2.3E-09 52.0 10.7 128 160-328 89-216 (219)
136 COG0159 TrpA Tryptophan syntha 98.1 0.00037 9.4E-09 47.8 13.8 204 65-321 31-238 (265)
137 PRK13136 consensus 98.0 0.0013 3.4E-08 44.1 16.1 208 60-321 18-231 (253)
138 COG0134 TrpC Indole-3-glycerol 98.0 0.00067 1.7E-08 46.1 14.6 101 220-322 140-242 (254)
139 cd02812 PcrB_like PcrB_like pr 98.0 8E-05 2E-09 52.3 9.8 89 218-331 130-218 (219)
140 PRK01130 N-acetylmannosamine-6 98.0 0.00032 8.1E-09 48.3 12.2 135 160-334 85-220 (222)
141 TIGR01768 GGGP-family geranylg 98.0 7.7E-05 2E-09 52.4 9.0 78 254-332 160-239 (242)
142 pfam04481 DUF561 Protein of un 97.9 0.0013 3.3E-08 44.1 14.8 176 132-339 60-238 (243)
143 TIGR01304 IMP_DH_rel_2 IMP deh 97.9 0.00062 1.6E-08 46.3 13.1 51 271-321 239-294 (376)
144 pfam01791 DeoC DeoC/LacD famil 97.9 0.00038 9.6E-09 47.8 11.8 91 207-318 121-225 (231)
145 PRK13131 consensus 97.9 0.00052 1.3E-08 46.8 12.2 226 60-339 17-253 (257)
146 COG0106 HisA Phosphoribosylfor 97.9 0.0013 3.4E-08 44.0 14.2 84 223-327 147-231 (241)
147 PRK13586 1-(5-phosphoribosyl)- 97.9 0.00074 1.9E-08 45.8 12.9 193 68-324 32-224 (231)
148 cd00945 Aldolase_Class_I Class 97.9 0.0016 4.1E-08 43.5 14.4 85 210-315 114-200 (201)
149 PRK13112 consensus 97.8 0.0003 7.6E-09 48.4 10.1 208 61-321 25-239 (279)
150 PRK07107 inositol-5-monophosph 97.8 0.0038 9.7E-08 41.0 15.6 35 285-319 350-384 (497)
151 PRK02747 consensus 97.8 0.00042 1.1E-08 47.5 10.0 88 226-334 33-120 (257)
152 TIGR00735 hisF imidazoleglycer 97.8 0.00013 3.3E-09 50.9 7.4 256 34-344 8-310 (312)
153 PRK09140 2-dehydro-3-deoxy-6-p 97.7 0.00022 5.6E-09 49.3 8.3 62 275-338 139-200 (206)
154 KOG1799 consensus 97.7 3.2E-06 8.3E-11 61.7 -1.1 29 146-174 184-214 (471)
155 PRK07107 inositol-5-monophosph 97.7 0.00048 1.2E-08 47.1 9.9 82 209-316 231-312 (497)
156 TIGR01302 IMP_dehydrog inosine 97.7 0.0052 1.3E-07 40.1 16.1 44 273-318 330-373 (476)
157 cd04723 HisA_HisF Phosphoribos 97.7 0.00082 2.1E-08 45.5 11.0 83 225-329 148-230 (233)
158 COG0107 HisF Imidazoleglycerol 97.7 0.00075 1.9E-08 45.8 10.4 91 224-335 31-121 (256)
159 PRK04169 geranylgeranylglycery 97.7 0.00012 3.1E-09 51.0 6.4 67 257-328 159-225 (229)
160 PRK02145 consensus 97.7 0.00054 1.4E-08 46.7 9.5 88 226-334 34-121 (257)
161 COG1646 Predicted phosphate-bi 97.7 0.0003 7.6E-09 48.5 8.0 92 220-335 147-238 (240)
162 pfam00218 IGPS Indole-3-glycer 97.7 0.00083 2.1E-08 45.4 10.1 196 48-325 50-248 (254)
163 KOG2334 consensus 97.7 0.00026 6.5E-09 48.9 7.5 160 135-327 83-252 (477)
164 TIGR01302 IMP_dehydrog inosine 97.6 0.0014 3.5E-08 44.0 11.0 81 210-316 228-308 (476)
165 PRK05211 consensus 97.6 0.00096 2.4E-08 45.0 10.1 55 275-332 55-109 (248)
166 PRK02621 consensus 97.6 0.00074 1.9E-08 45.8 9.2 30 57-87 76-105 (254)
167 PRK01659 consensus 97.6 0.00087 2.2E-08 45.3 9.5 89 225-334 32-120 (252)
168 PRK07455 keto-hydroxyglutarate 97.6 0.0036 9.1E-08 41.2 12.6 45 275-321 142-186 (210)
169 pfam03437 BtpA BtpA family. Th 97.6 0.0037 9.5E-08 41.1 12.5 197 69-323 33-234 (254)
170 PRK13597 imidazole glycerol ph 97.5 0.0016 4E-08 43.6 10.3 56 274-332 64-119 (252)
171 PRK06552 keto-hydroxyglutarate 97.5 0.0018 4.7E-08 43.1 10.6 45 274-320 143-187 (209)
172 COG3010 NanE Putative N-acetyl 97.5 0.0047 1.2E-07 40.4 12.6 163 114-325 49-216 (229)
173 PRK04281 consensus 97.5 0.0014 3.5E-08 44.0 9.8 87 226-333 33-119 (254)
174 pfam01081 Aldolase KDPG and KH 97.5 0.0021 5.3E-08 42.8 10.4 59 275-348 137-195 (196)
175 PRK01033 imidazole glycerol ph 97.5 0.0017 4.3E-08 43.4 9.6 30 57-87 76-105 (253)
176 TIGR03572 WbuZ glycosyl amidat 97.5 0.0019 4.9E-08 43.0 9.9 89 225-334 32-120 (232)
177 PRK02083 imidazole glycerol ph 97.5 0.0015 3.8E-08 43.8 9.2 34 55-89 74-107 (253)
178 PRK13586 1-(5-phosphoribosyl)- 97.5 0.0032 8.1E-08 41.5 10.8 87 226-334 32-118 (231)
179 PRK04128 1-(5-phosphoribosyl)- 97.4 0.0048 1.2E-07 40.3 11.3 81 225-331 145-225 (228)
180 PRK00830 consensus 97.4 0.0014 3.6E-08 43.9 8.5 88 226-334 37-124 (273)
181 PRK00748 1-(5-phosphoribosyl)- 97.4 0.0027 6.8E-08 42.0 9.9 87 226-333 32-118 (241)
182 TIGR01304 IMP_DH_rel_2 IMP deh 97.4 0.0026 6.7E-08 42.1 9.8 213 39-342 28-257 (376)
183 cd04731 HisF The cyclase subun 97.4 0.0016 4E-08 43.6 8.5 34 55-89 71-104 (243)
184 pfam01884 PcrB PcrB family. Th 97.4 0.00044 1.1E-08 47.3 5.6 54 271-327 168-221 (231)
185 PRK03220 consensus 97.4 0.0038 9.8E-08 41.0 10.3 33 56-89 76-108 (257)
186 COG2022 ThiG Uncharacterized e 97.3 0.016 4.2E-07 36.7 15.9 213 45-325 6-221 (262)
187 PRK13802 bifunctional indole-3 97.3 0.0023 5.9E-08 42.5 8.9 194 48-323 52-247 (695)
188 PRK13813 orotidine 5'-phosphat 97.2 0.021 5.3E-07 36.0 17.1 201 55-334 3-212 (215)
189 PRK09140 2-dehydro-3-deoxy-6-p 97.2 0.006 1.5E-07 39.7 10.1 137 133-334 9-148 (206)
190 PRK05283 deoxyribose-phosphate 97.2 0.024 6.2E-07 35.6 12.8 80 211-308 132-217 (258)
191 pfam04131 NanE Putative N-acet 97.2 0.0066 1.7E-07 39.4 9.8 129 160-334 61-190 (192)
192 TIGR00007 TIGR00007 phosphorib 97.2 0.0047 1.2E-07 40.4 9.0 90 224-334 29-119 (241)
193 PRK13585 1-(5-phosphoribosyl)- 97.2 0.0069 1.8E-07 39.3 9.8 36 54-90 74-109 (240)
194 PRK08745 ribulose-phosphate 3- 97.1 0.026 6.6E-07 35.4 17.2 206 60-338 11-219 (223)
195 cd00331 IGPS Indole-3-glycerol 97.1 0.0095 2.4E-07 38.3 10.2 192 49-322 14-207 (217)
196 TIGR01306 GMP_reduct_2 guanosi 97.1 0.023 5.8E-07 35.8 12.1 215 39-325 18-238 (321)
197 pfam00977 His_biosynth Histidi 97.1 0.0083 2.1E-07 38.7 9.8 56 274-332 62-117 (229)
198 PRK07695 transcriptional regul 97.1 0.0052 1.3E-07 40.1 8.7 93 225-338 105-201 (202)
199 PRK07114 keto-hydroxyglutarate 97.1 0.03 7.6E-07 35.0 12.9 46 275-321 148-194 (223)
200 PRK06857 consensus 97.1 0.0072 1.8E-07 39.1 9.2 45 275-321 141-185 (209)
201 COG0800 Eda 2-keto-3-deoxy-6-p 97.1 0.0091 2.3E-07 38.4 9.8 63 276-340 143-208 (211)
202 KOG2550 consensus 97.1 0.0077 2E-07 38.9 9.4 127 159-319 259-386 (503)
203 PRK02615 thiamine-phosphate py 97.0 0.021 5.3E-07 36.0 11.3 65 270-340 277-342 (345)
204 TIGR00735 hisF imidazoleglycer 97.0 0.0039 9.9E-08 40.9 7.5 92 224-333 43-145 (312)
205 PRK00230 orotidine 5'-phosphat 97.0 0.034 8.6E-07 34.6 15.1 200 54-336 1-230 (231)
206 COG0329 DapA Dihydrodipicolina 97.0 0.0099 2.5E-07 38.2 9.5 192 64-332 22-223 (299)
207 PRK06512 thiamine-phosphate py 97.0 0.012 3E-07 37.7 9.9 95 226-341 121-215 (221)
208 PRK00278 trpC indole-3-glycero 97.0 0.01 2.6E-07 38.1 9.5 193 48-322 52-246 (261)
209 cd04732 HisA HisA. Phosphorib 97.0 0.012 3E-07 37.7 9.6 34 55-89 73-106 (234)
210 PRK06843 inositol-5-monophosph 97.0 0.012 3E-07 37.7 9.6 32 320-351 347-380 (404)
211 TIGR00674 dapA dihydrodipicoli 96.9 0.009 2.3E-07 38.5 8.7 51 273-331 164-217 (288)
212 PTZ00314 inosine-5'-monophosph 96.9 0.01 2.6E-07 38.1 9.0 83 208-316 225-307 (499)
213 pfam00478 IMPDH IMP dehydrogen 96.9 0.012 3E-07 37.7 9.1 79 212-316 214-292 (467)
214 PRK08883 ribulose-phosphate 3- 96.9 0.043 1.1E-06 33.9 16.9 210 57-339 4-216 (220)
215 cd00952 CHBPH_aldolase Trans-o 96.9 0.016 4.1E-07 36.7 9.8 113 67-218 31-144 (309)
216 TIGR01163 rpe ribulose-phospha 96.9 0.044 1.1E-06 33.8 12.7 200 57-330 4-212 (216)
217 COG0036 Rpe Pentose-5-phosphat 96.9 0.045 1.1E-06 33.8 16.8 207 56-336 7-215 (220)
218 pfam00701 DHDPS Dihydrodipicol 96.8 0.018 4.6E-07 36.4 9.5 187 68-331 25-218 (289)
219 TIGR01769 GGGP geranylgeranylg 96.8 0.0027 6.8E-08 42.1 5.1 47 265-313 163-209 (212)
220 PRK03620 5-dehydro-4-deoxygluc 96.8 0.02 5E-07 36.2 9.5 176 68-317 25-206 (296)
221 cd00951 KDGDH 5-dehydro-4-deox 96.8 0.019 4.7E-07 36.4 9.3 179 68-318 24-206 (289)
222 PRK09427 bifunctional indole-3 96.8 0.053 1.4E-06 33.3 13.6 48 274-322 198-245 (459)
223 PRK06015 keto-hydroxyglutarate 96.8 0.025 6.3E-07 35.5 9.8 44 275-320 144-187 (212)
224 TIGR03249 KdgD 5-dehydro-4-deo 96.7 0.018 4.5E-07 36.5 8.8 190 68-332 29-223 (296)
225 PRK05567 inositol-5'-monophosp 96.7 0.0087 2.2E-07 38.6 7.3 70 224-316 228-297 (486)
226 PRK00043 thiE thiamine-phospha 96.7 0.045 1.1E-06 33.8 10.8 102 212-339 104-207 (210)
227 PRK08104 consensus 96.7 0.029 7.3E-07 35.1 9.8 44 275-320 144-187 (212)
228 cd00452 KDPG_aldolase KDPG and 96.7 0.053 1.4E-06 33.3 11.1 156 68-319 19-174 (190)
229 PRK06552 keto-hydroxyglutarate 96.7 0.036 9.1E-07 34.5 10.2 132 152-340 26-175 (209)
230 PRK13587 1-(5-phosphoribosyl)- 96.7 0.034 8.5E-07 34.6 10.0 34 56-90 77-110 (234)
231 PRK07028 bifunctional hexulose 96.7 0.065 1.6E-06 32.7 15.3 186 71-334 22-210 (429)
232 PRK08904 consensus 96.6 0.049 1.3E-06 33.5 10.7 44 275-320 139-182 (207)
233 PRK08782 consensus 96.6 0.02 5.2E-07 36.1 8.7 44 275-320 146-189 (219)
234 cd00381 IMPDH IMPDH: The catal 96.6 0.039 1E-06 34.2 10.1 40 274-315 123-162 (325)
235 PRK03170 dihydrodipicolinate s 96.6 0.035 9E-07 34.5 9.8 188 68-332 25-219 (292)
236 PRK05718 keto-hydroxyglutarate 96.6 0.037 9.5E-07 34.3 9.7 43 275-320 144-187 (212)
237 cd04723 HisA_HisF Phosphoribos 96.6 0.03 7.5E-07 35.0 9.2 31 56-87 79-109 (233)
238 cd00950 DHDPS Dihydrodipicolin 96.6 0.037 9.4E-07 34.3 9.7 189 68-332 24-218 (284)
239 PRK07455 keto-hydroxyglutarate 96.6 0.04 1E-06 34.1 9.8 124 151-332 25-149 (210)
240 cd00452 KDPG_aldolase KDPG and 96.6 0.052 1.3E-06 33.3 10.4 133 151-343 16-165 (190)
241 pfam01070 FMN_dh FMN-dependent 96.6 0.049 1.2E-06 33.5 10.2 87 211-316 110-197 (301)
242 pfam01081 Aldolase KDPG and KH 96.5 0.039 9.9E-07 34.2 9.5 123 152-332 21-144 (196)
243 PRK08904 consensus 96.5 0.028 7.3E-07 35.1 8.8 135 151-343 22-173 (207)
244 PRK04147 N-acetylneuraminate l 96.5 0.046 1.2E-06 33.7 9.7 198 55-330 12-219 (294)
245 PRK13306 ulaD 3-keto-L-gulonat 96.5 0.083 2.1E-06 32.0 13.0 167 123-337 46-214 (216)
246 PRK08104 consensus 96.4 0.094 2.4E-06 31.6 12.2 136 150-343 26-178 (212)
247 pfam00834 Ribul_P_3_epim Ribul 96.4 0.095 2.4E-06 31.6 13.3 195 57-324 4-201 (201)
248 cd00429 RPE Ribulose-5-phospha 96.4 0.097 2.5E-06 31.5 15.6 199 59-330 6-207 (211)
249 PRK07114 keto-hydroxyglutarate 96.3 0.047 1.2E-06 33.7 9.1 127 151-332 28-155 (223)
250 PRK06857 consensus 96.3 0.099 2.5E-06 31.5 12.6 145 121-332 3-148 (209)
251 cd02809 alpha_hydroxyacid_oxid 96.3 0.092 2.4E-06 31.7 10.6 84 211-316 117-200 (299)
252 cd00408 DHDPS-like Dihydrodipi 96.3 0.071 1.8E-06 32.4 9.8 189 68-332 21-215 (281)
253 PRK08091 ribulose-phosphate 3- 96.3 0.11 2.8E-06 31.2 14.5 213 57-338 17-234 (235)
254 TIGR01919 hisA-trpF bifunction 96.2 0.033 8.5E-07 34.6 7.6 85 218-322 147-234 (246)
255 PRK04128 1-(5-phosphoribosyl)- 96.2 0.022 5.5E-07 35.9 6.6 35 54-89 72-106 (228)
256 PRK08673 3-deoxy-7-phosphohept 96.1 0.047 1.2E-06 33.6 8.1 229 43-340 78-331 (335)
257 PRK08005 ribulose-phosphate 3- 96.1 0.13 3.4E-06 30.6 15.0 205 56-335 4-208 (210)
258 TIGR01182 eda 2-dehydro-3-deox 96.0 0.054 1.4E-06 33.2 8.1 176 64-334 19-201 (205)
259 COG2876 AroA 3-deoxy-D-arabino 96.0 0.14 3.6E-06 30.4 17.0 227 45-340 31-283 (286)
260 PRK03512 thiamine-phosphate py 96.0 0.12 3.1E-06 30.8 9.7 91 212-325 103-196 (211)
261 cd04742 NPD_FabD 2-Nitropropan 96.0 0.15 3.8E-06 30.3 11.6 51 268-318 198-250 (418)
262 PRK04180 pyridoxine biosynthes 96.0 0.013 3.4E-07 37.3 4.7 73 274-346 192-282 (293)
263 PRK06015 keto-hydroxyglutarate 95.9 0.11 2.8E-06 31.1 9.3 135 151-343 27-178 (212)
264 PRK12330 oxaloacetate decarbox 95.9 0.16 4.1E-06 30.0 13.9 181 126-344 69-258 (499)
265 PTZ00170 D-ribulose-5-phosphat 95.9 0.16 4.2E-06 30.0 17.8 184 103-340 37-220 (224)
266 TIGR03217 4OH_2_O_val_ald 4-hy 95.8 0.17 4.3E-06 29.9 16.2 216 68-345 27-247 (333)
267 COG0106 HisA Phosphoribosylfor 95.8 0.05 1.3E-06 33.4 7.2 34 54-88 74-107 (241)
268 KOG0399 consensus 95.8 0.066 1.7E-06 32.6 7.8 80 282-361 1164-1278(2142)
269 PRK08195 4-hydroxy-2-ketovaler 95.7 0.19 4.9E-06 29.5 16.5 216 68-345 28-248 (337)
270 PRK09722 allulose-6-phosphate 95.6 0.2 5.1E-06 29.4 10.0 186 100-338 29-221 (227)
271 COG0800 Eda 2-keto-3-deoxy-6-p 95.6 0.19 5E-06 29.5 9.5 42 287-330 106-147 (211)
272 PRK05581 ribulose-phosphate 3- 95.6 0.22 5.5E-06 29.2 17.0 207 57-337 8-217 (220)
273 cd00954 NAL N-Acetylneuraminic 95.5 0.11 2.8E-06 31.2 8.0 195 61-330 14-218 (288)
274 TIGR00693 thiE thiamine-phosph 95.5 0.076 1.9E-06 32.2 7.2 140 120-321 51-199 (210)
275 cd04727 pdxS PdxS is a subunit 95.5 0.022 5.7E-07 35.8 4.4 71 274-346 183-273 (283)
276 cd04737 LOX_like_FMN L-Lactate 95.5 0.23 6E-06 28.9 10.1 104 210-316 125-249 (351)
277 PRK08782 consensus 95.4 0.24 6.1E-06 28.9 13.9 134 152-343 30-180 (219)
278 cd00564 TMP_TenI Thiamine mono 95.4 0.22 5.5E-06 29.2 9.1 91 212-325 96-188 (196)
279 cd00953 KDG_aldolase KDG (2-ke 95.3 0.25 6.4E-06 28.7 9.2 197 56-332 10-213 (279)
280 PRK13957 indole-3-glycerol-pho 95.3 0.26 6.7E-06 28.6 10.7 192 48-322 43-236 (247)
281 COG0214 SNZ1 Pyridoxine biosyn 95.2 0.042 1.1E-06 34.0 5.0 70 275-346 196-285 (296)
282 PRK12595 bifunctional 3-deoxy- 95.2 0.13 3.3E-06 30.7 7.5 232 42-342 102-358 (360)
283 TIGR01108 oadA oxaloacetate de 95.2 0.18 4.7E-06 29.7 8.3 213 71-345 27-253 (616)
284 PRK13396 3-deoxy-7-phosphohept 95.2 0.14 3.5E-06 30.5 7.6 233 45-354 85-345 (352)
285 TIGR00674 dapA dihydrodipicoli 95.2 0.29 7.3E-06 28.3 11.7 19 321-339 222-240 (288)
286 pfam02219 MTHFR Methylenetetra 95.2 0.29 7.3E-06 28.3 11.9 132 145-334 153-285 (286)
287 PRK07807 inositol-5-monophosph 95.2 0.1 2.7E-06 31.3 6.9 86 212-323 218-310 (479)
288 PRK06267 hypothetical protein; 95.0 0.31 8E-06 28.1 13.5 132 211-354 172-305 (324)
289 KOG1606 consensus 94.9 0.15 3.9E-06 30.2 7.2 77 274-352 196-292 (296)
290 PRK06512 thiamine-phosphate py 94.8 0.17 4.4E-06 29.8 7.2 70 208-317 70-139 (221)
291 COG0352 ThiE Thiamine monophos 94.7 0.37 9.5E-06 27.6 10.6 101 212-335 105-207 (211)
292 KOG2550 consensus 94.7 0.17 4.4E-06 29.8 7.0 68 226-316 253-320 (503)
293 TIGR03128 RuMP_HxlA 3-hexulose 94.7 0.38 9.8E-06 27.5 11.4 161 123-333 42-205 (206)
294 pfam02581 TMP-TENI Thiamine mo 94.7 0.23 5.9E-06 29.0 7.6 85 212-319 96-180 (180)
295 COG0434 SgcQ Predicted TIM-bar 94.6 0.39 1E-05 27.4 10.8 211 70-338 39-261 (263)
296 PRK01130 N-acetylmannosamine-6 94.6 0.28 7.2E-06 28.4 7.8 65 229-315 81-145 (222)
297 pfam04309 G3P_antiterm Glycero 94.5 0.079 2E-06 32.1 5.0 41 274-316 128-168 (174)
298 pfam09370 TIM-br_sig_trns TIM- 94.5 0.41 1.1E-05 27.3 9.8 219 56-322 15-250 (268)
299 KOG0564 consensus 94.4 0.44 1.1E-05 27.1 11.8 37 148-184 166-221 (590)
300 PRK08649 inositol-5-monophosph 94.4 0.22 5.6E-06 29.1 7.0 75 223-316 140-214 (368)
301 TIGR00259 TIGR00259 conserved 94.3 0.46 1.2E-05 26.9 13.3 224 57-337 22-259 (261)
302 cd02922 FCB2_FMN Flavocytochro 94.3 0.47 1.2E-05 26.9 10.1 103 211-316 119-241 (344)
303 KOG4201 consensus 94.2 0.24 6E-06 28.9 6.8 52 274-325 224-276 (289)
304 cd04729 NanE N-acetylmannosami 93.7 0.54 1.4E-05 26.5 7.9 120 206-349 57-192 (219)
305 TIGR01361 DAHP_synth_Bsub phos 93.7 0.6 1.5E-05 26.2 13.7 229 44-341 11-259 (262)
306 cd04725 OMP_decarboxylase_like 93.5 0.65 1.7E-05 25.9 14.1 146 122-321 40-205 (216)
307 PRK11572 copper homeostasis pr 93.4 0.67 1.7E-05 25.9 8.9 44 271-316 155-198 (248)
308 KOG4175 consensus 93.4 0.68 1.7E-05 25.8 11.4 209 60-321 24-240 (268)
309 PRK09517 multifunctional thiam 93.2 0.45 1.1E-05 27.0 6.8 24 71-94 252-276 (738)
310 PRK13398 3-deoxy-7-phosphohept 93.2 0.32 8E-06 28.1 5.9 204 44-317 13-232 (266)
311 COG0646 MetH Methionine syntha 92.8 0.81 2.1E-05 25.3 13.3 155 160-338 63-246 (311)
312 TIGR01464 hemE uroporphyrinoge 92.8 0.82 2.1E-05 25.3 7.7 19 149-169 182-200 (351)
313 COG0134 TrpC Indole-3-glycerol 92.6 0.59 1.5E-05 26.2 6.7 175 123-349 35-222 (254)
314 TIGR00343 TIGR00343 pyridoxine 92.2 0.89 2.3E-05 25.0 7.2 76 273-350 191-286 (298)
315 PRK04302 triosephosphate isome 92.1 0.99 2.5E-05 24.7 8.1 109 224-337 102-221 (223)
316 PRK13397 3-deoxy-7-phosphohept 92.0 1 2.6E-05 24.6 10.4 153 114-317 59-220 (250)
317 cd02929 TMADH_HD_FMN Trimethyl 91.9 0.75 1.9E-05 25.5 6.5 98 219-318 139-260 (370)
318 COG1954 GlpP Glycerol-3-phosph 91.9 0.26 6.5E-06 28.7 4.1 66 222-315 107-172 (181)
319 PRK08999 hypothetical protein; 91.7 1.1 2.8E-05 24.4 11.4 77 224-319 235-311 (312)
320 PRK08227 aldolase; Validated 91.6 1.1 2.9E-05 24.4 12.5 142 160-350 131-283 (291)
321 TIGR01303 IMP_DH_rel_1 IMP deh 91.3 0.4 1E-05 27.4 4.6 75 266-346 311-389 (476)
322 PRK08508 biotin synthase; Prov 91.3 1.2 3.1E-05 24.1 8.8 193 118-344 72-273 (279)
323 TIGR01361 DAHP_synth_Bsub phos 91.2 0.55 1.4E-05 26.4 5.2 93 132-242 131-229 (262)
324 PRK09282 pyruvate carboxylase 91.1 1.3 3.2E-05 24.0 13.1 87 216-323 148-237 (580)
325 TIGR00734 hisAF_rel hisA/hisF 90.7 0.92 2.3E-05 24.9 6.0 81 222-323 148-228 (230)
326 PRK07226 fructose-bisphosphate 90.5 1.4 3.7E-05 23.6 12.4 141 163-350 106-261 (266)
327 cd02071 MM_CoA_mut_B12_BD meth 90.4 1.5 3.7E-05 23.6 8.3 76 214-313 31-106 (122)
328 TIGR01212 TIGR01212 radical SA 90.1 1.5 3.9E-05 23.4 6.9 192 120-342 95-298 (307)
329 TIGR02090 LEU1_arch isopropylm 89.8 1.4 3.5E-05 23.8 6.3 102 211-338 127-244 (371)
330 TIGR00262 trpA tryptophan synt 89.7 1.7 4.2E-05 23.2 7.8 215 57-321 14-232 (262)
331 PRK08645 bifunctional homocyst 89.3 1.8 4.5E-05 23.0 14.6 125 208-335 323-516 (608)
332 PRK12457 2-dehydro-3-deoxyphos 89.1 1.8 4.7E-05 22.9 7.8 139 55-244 14-165 (281)
333 PRK02261 methylaspartate mutas 88.8 1.9 4.9E-05 22.8 10.8 95 215-340 36-136 (137)
334 PRK09432 metF 5,10-methylenete 88.5 2 5.1E-05 22.6 14.4 32 300-334 259-290 (296)
335 PRK13305 sgbH 3-keto-L-gulonat 88.1 2.1 5.4E-05 22.5 12.8 167 123-337 46-214 (220)
336 TIGR03326 rubisco_III ribulose 88.1 2.1 5.4E-05 22.5 12.5 122 108-244 120-244 (412)
337 pfam03932 CutC CutC family. Co 88.0 2.2 5.5E-05 22.5 10.5 143 133-315 50-198 (202)
338 cd00537 MTHFR Methylenetetrahy 87.8 2.2 5.6E-05 22.4 12.7 69 144-230 141-209 (274)
339 COG5564 Predicted TIM-barrel e 87.5 2.3 5.8E-05 22.3 7.7 73 226-307 166-241 (276)
340 cd04726 KGPDC_HPS 3-Keto-L-gul 87.4 2.3 5.9E-05 22.2 10.6 156 118-325 39-196 (202)
341 cd00717 URO-D Uroporphyrinogen 87.2 2.4 6E-05 22.2 6.0 17 14-30 39-55 (335)
342 PRK12999 pyruvate carboxylase; 86.8 2.5 6.4E-05 22.0 12.2 85 218-323 687-774 (1147)
343 TIGR00973 leuA_bact 2-isopropy 85.9 2.8 7E-05 21.7 7.8 171 150-345 150-362 (514)
344 TIGR00126 deoC deoxyribose-pho 85.7 1.7 4.4E-05 23.1 4.7 87 212-319 129-221 (225)
345 cd00516 PRTase_typeII Phosphor 85.7 2.9 7.3E-05 21.6 6.7 35 284-319 236-270 (281)
346 PRK09426 methylmalonyl-CoA mut 85.3 3 7.6E-05 21.5 11.1 98 212-313 586-689 (715)
347 COG0269 SgbH 3-hexulose-6-phos 85.0 3.1 7.8E-05 21.4 13.6 169 118-334 42-212 (217)
348 TIGR01949 AroFGH_arch predicte 84.1 2.6 6.6E-05 21.9 5.0 134 160-338 100-248 (259)
349 PRK05692 hydroxymethylglutaryl 84.0 3.4 8.6E-05 21.1 11.6 103 221-345 153-264 (287)
350 PRK10610 chemotaxis regulatory 83.8 3.4 8.8E-05 21.1 6.6 62 274-342 66-128 (129)
351 cd01573 modD_like ModD; Quinol 83.7 3.5 8.8E-05 21.1 8.2 81 209-324 183-264 (272)
352 KOG0134 consensus 83.3 3.6 9.2E-05 20.9 11.5 177 147-336 169-367 (400)
353 PRK12581 oxaloacetate decarbox 82.8 3.8 9.6E-05 20.8 12.5 91 214-325 154-247 (468)
354 pfam04898 Glu_syn_central Glut 82.6 3.8 9.7E-05 20.8 9.2 117 223-353 140-279 (288)
355 TIGR01305 GMP_reduct_1 guanosi 82.6 2.7 7E-05 21.8 4.6 38 285-324 210-247 (343)
356 PRK13307 bifunctional formalde 82.5 3.8 9.8E-05 20.8 13.3 45 275-322 319-363 (392)
357 COG1242 Predicted Fe-S oxidore 82.4 3.9 9.9E-05 20.7 6.4 118 119-242 98-217 (312)
358 PRK05198 2-dehydro-3-deoxyphos 82.3 3.9 0.0001 20.7 7.3 171 114-337 60-260 (264)
359 PRK13505 formate--tetrahydrofo 81.5 4.2 0.00011 20.5 6.5 33 209-241 371-405 (556)
360 PRK09490 metH B12-dependent me 80.9 4.4 0.00011 20.4 15.3 79 159-243 394-488 (1229)
361 TIGR00419 tim triosephosphate 79.7 1.8 4.5E-05 23.0 2.9 45 276-320 196-241 (244)
362 TIGR02814 pfaD_fam PfaD family 79.3 4.9 0.00013 20.0 11.2 50 268-317 203-256 (449)
363 COG0284 PyrF Orotidine-5'-phos 79.0 5 0.00013 20.0 14.9 158 123-337 54-237 (240)
364 KOG0623 consensus 78.7 5.1 0.00013 19.9 6.1 35 288-322 317-362 (541)
365 PRK13370 mhpB 3-(2,3-dihydroxy 78.7 4.3 0.00011 20.5 4.5 35 277-311 158-202 (313)
366 COG0685 MetF 5,10-methylenetet 78.1 5.3 0.00014 19.8 10.4 23 220-242 89-111 (291)
367 COG0812 MurB UDP-N-acetylmuram 77.9 2.3 6E-05 22.2 3.0 21 212-233 176-196 (291)
368 cd07365 MhpB_like Subunit B of 77.8 4.9 0.00013 20.0 4.7 35 277-311 158-202 (310)
369 PRK07094 biotin synthase; Prov 76.8 5.8 0.00015 19.6 8.8 122 212-344 185-320 (323)
370 cd00956 Transaldolase_FSA Tran 76.3 6 0.00015 19.5 6.0 42 276-318 146-187 (211)
371 cd02067 B12-binding B12 bindin 76.2 6 0.00015 19.4 9.1 76 214-313 31-106 (119)
372 cd00377 ICL_PEPM Members of th 75.8 6.1 0.00016 19.4 11.7 209 56-322 9-232 (243)
373 PRK09549 mtnW 2,3-diketo-5-met 75.6 6.2 0.00016 19.4 12.1 121 108-242 116-239 (411)
374 PRK01362 putative translaldola 75.5 6.2 0.00016 19.3 6.9 41 277-318 147-187 (214)
375 TIGR03332 salvage_mtnW 2,3-dik 75.5 6.2 0.00016 19.3 11.4 245 70-341 87-387 (407)
376 COG2877 KdsA 3-deoxy-D-manno-o 74.9 6.5 0.00016 19.2 7.4 156 45-244 3-166 (279)
377 cd02072 Glm_B12_BD B12 binding 74.1 6.7 0.00017 19.1 8.4 77 214-313 31-112 (128)
378 pfam04476 DUF556 Protein of un 73.8 6.9 0.00018 19.0 15.3 203 66-323 8-215 (235)
379 TIGR00073 hypB hydrogenase acc 73.4 6.6 0.00017 19.2 4.4 22 156-177 109-136 (225)
380 PRK02227 hypothetical protein; 72.9 7.2 0.00018 18.9 18.7 216 66-335 8-234 (239)
381 KOG3304 consensus 72.9 0.99 2.5E-05 24.7 0.0 48 299-354 61-108 (148)
382 cd00958 DhnA Class I fructose- 72.4 7.4 0.00019 18.8 9.0 129 163-336 89-232 (235)
383 COG2185 Sbm Methylmalonyl-CoA 71.9 7.6 0.00019 18.8 7.2 119 212-340 16-139 (143)
384 TIGR01064 pyruv_kin pyruvate k 71.8 7.6 0.00019 18.7 7.7 234 46-339 88-365 (513)
385 pfam01474 DAHP_synth_2 Class-I 71.6 5.4 0.00014 19.8 3.5 36 208-243 279-315 (437)
386 cd00617 Tnase_like Tryptophana 71.4 7.8 0.0002 18.7 7.8 157 153-322 141-366 (431)
387 PRK06256 biotin synthase; Vali 71.2 7.9 0.0002 18.7 14.4 116 212-344 206-322 (325)
388 pfam02007 MtrH Tetrahydrometha 70.7 5.3 0.00013 19.8 3.4 52 120-175 49-102 (296)
389 pfam01729 QRPTase_C Quinolinat 70.6 8.1 0.00021 18.6 11.2 77 210-318 81-157 (169)
390 TIGR01358 DAHP_synth_II 3-deox 70.3 3.4 8.7E-05 21.1 2.3 35 208-242 284-319 (450)
391 PRK06096 molybdenum transport 70.2 8.2 0.00021 18.5 8.0 82 209-325 189-271 (284)
392 PRK10693 response regulator of 70.0 8.3 0.00021 18.5 5.2 33 55-88 79-111 (337)
393 cd01571 NAPRTase_B Nicotinate 69.8 8.4 0.00021 18.5 6.1 88 209-320 184-277 (302)
394 COG0157 NadC Nicotinate-nucleo 69.6 8.5 0.00022 18.4 5.2 33 284-317 231-263 (280)
395 PRK00115 hemE uroporphyrinogen 69.2 8.6 0.00022 18.4 7.2 74 226-316 190-268 (347)
396 PRK04183 glutamyl-tRNA(Gln) am 68.5 8.1 0.00021 18.6 3.9 56 212-293 291-346 (421)
397 pfam01136 Peptidase_U32 Peptid 68.0 9.1 0.00023 18.2 8.2 38 300-339 160-197 (232)
398 PRK07428 nicotinate-nucleotide 67.7 9.3 0.00024 18.2 8.2 67 225-317 203-269 (285)
399 COG1411 Uncharacterized protei 67.6 9.3 0.00024 18.2 5.3 87 216-325 132-218 (229)
400 PRK05848 nicotinate-nucleotide 67.5 9.3 0.00024 18.2 11.1 67 225-318 191-258 (272)
401 TIGR01697 PNPH-PUNA-XAPA inosi 67.2 9.5 0.00024 18.1 6.6 92 223-318 76-204 (266)
402 COG2355 Zn-dependent dipeptida 67.2 9.5 0.00024 18.1 8.9 51 308-359 251-305 (313)
403 pfam06135 DUF965 Bacterial pro 67.0 6.6 0.00017 19.2 3.2 29 324-352 14-42 (79)
404 pfam02662 FlpD Methyl-viologen 66.9 9.6 0.00024 18.1 7.3 13 231-243 47-59 (124)
405 PRK08385 nicotinate-nucleotide 66.7 9.7 0.00025 18.1 7.5 78 210-318 184-262 (279)
406 PRK04208 rbcL ribulose bisopho 66.7 9.7 0.00025 18.0 10.8 123 108-244 135-260 (467)
407 TIGR00705 SppA_67K signal pept 66.7 5.5 0.00014 19.7 2.7 165 151-336 345-571 (614)
408 pfam01208 URO-D Uroporphyrinog 66.6 9.7 0.00025 18.0 6.4 11 132-142 134-144 (337)
409 PRK05473 hypothetical protein; 66.5 6.8 0.00017 19.1 3.2 29 324-352 17-45 (86)
410 PRK06559 nicotinate-nucleotide 66.0 10 0.00025 18.0 8.6 65 224-317 206-270 (290)
411 PRK11829 biofilm formation reg 65.0 10 0.00027 17.8 7.7 49 273-327 665-713 (728)
412 PRK12656 fructose-6-phosphate 64.8 10 0.00027 17.8 6.3 65 277-342 151-218 (222)
413 TIGR03555 F420_mer 5,10-methyl 64.3 11 0.00027 17.7 6.3 25 40-64 51-75 (325)
414 PRK12548 shikimate 5-dehydroge 64.1 11 0.00028 17.7 6.4 17 113-130 104-120 (289)
415 pfam00072 Response_reg Respons 64.0 11 0.00028 17.7 4.7 37 275-312 59-95 (111)
416 PRK08349 hypothetical protein; 63.4 11 0.00028 17.6 4.5 11 273-283 181-191 (198)
417 TIGR02538 type_IV_pilB type IV 62.7 9.6 0.00024 18.1 3.4 47 300-350 526-572 (577)
418 TIGR02477 PFKA_PPi diphosphate 62.5 12 0.00029 17.5 5.9 22 120-143 157-178 (566)
419 COG3514 Uncharacterized protei 61.6 12 0.00031 17.4 4.0 31 299-342 63-93 (93)
420 PRK07188 nicotinate phosphorib 60.9 12 0.00031 17.3 9.2 104 210-320 209-320 (355)
421 PRK13238 tnaA tryptophanase; P 60.8 12 0.00031 17.3 7.8 159 154-325 167-395 (461)
422 TIGR01320 mal_quin_oxido malat 60.7 7.4 0.00019 18.8 2.5 69 92-173 102-170 (487)
423 PRK08384 thiamine biosynthesis 59.7 13 0.00033 17.2 7.1 56 285-345 179-234 (310)
424 TIGR02617 tnaA_trp_ase tryptop 59.7 13 0.00033 17.2 3.8 163 150-325 169-403 (468)
425 TIGR00284 TIGR00284 dihydropte 58.9 13 0.00034 17.1 4.3 116 223-354 288-414 (529)
426 PRK12290 thiE thiamine-phospha 58.4 14 0.00035 17.1 7.5 69 270-342 342-418 (439)
427 COG0469 PykF Pyruvate kinase [ 58.2 14 0.00035 17.0 10.8 170 146-356 174-369 (477)
428 TIGR02313 HpaI-NOT-DapA 2,4-di 58.2 14 0.00035 17.0 5.8 209 56-311 10-242 (294)
429 TIGR00507 aroE shikimate 5-deh 57.8 14 0.00035 17.0 3.9 94 70-194 69-167 (286)
430 cd01966 Nitrogenase_NifN_1 Nit 57.8 14 0.00035 17.0 12.2 80 162-244 113-192 (417)
431 TIGR00078 nadC nicotinate-nucl 57.7 14 0.00035 17.0 4.8 40 275-316 222-261 (276)
432 PRK12376 putative translaldola 57.7 14 0.00035 17.0 16.1 191 67-322 16-207 (238)
433 TIGR02317 prpB methylisocitrat 57.6 14 0.00036 17.0 8.1 38 103-140 38-81 (287)
434 pfam07364 DUF1485 Protein of u 57.5 14 0.00036 17.0 5.3 50 286-342 224-273 (292)
435 PRK10463 hydrogenase nickel in 57.2 14 0.00036 16.9 4.8 16 110-125 107-122 (290)
436 COG5598 Trimethylamine:corrino 56.9 14 0.00037 16.9 5.3 178 120-323 194-400 (526)
437 PRK05742 nicotinate-nucleotide 56.6 14 0.00037 16.9 7.6 75 208-317 188-262 (277)
438 TIGR00519 asnASE_I L-asparagin 56.5 15 0.00037 16.9 4.0 27 212-242 223-249 (347)
439 CHL00040 rbcL ribulose-1,5-bis 56.5 15 0.00037 16.9 11.5 110 119-241 154-266 (477)
440 PRK08072 nicotinate-nucleotide 56.1 15 0.00038 16.8 11.3 75 208-317 187-261 (277)
441 PRK09355 hydroxyethylthiazole 55.3 15 0.00039 16.7 4.0 20 157-176 48-67 (262)
442 cd01572 QPRTase Quinolinate ph 55.2 15 0.00039 16.7 10.8 75 209-318 182-256 (268)
443 COG0502 BioB Biotin synthase a 55.0 15 0.00039 16.7 6.4 180 120-324 117-303 (335)
444 PRK13780 phosphocarrier protei 54.8 15 0.00039 16.7 5.1 67 276-344 21-87 (88)
445 TIGR00677 fadh2_euk methylenet 53.4 16 0.00041 16.5 6.2 64 220-289 77-140 (312)
446 PRK13655 phosphoenolpyruvate c 53.3 14 0.00037 16.9 3.0 26 270-296 366-391 (487)
447 PRK10949 protease 4; Provision 53.1 13 0.00034 17.1 2.8 14 290-303 505-518 (618)
448 pfam02873 MurB_C UDP-N-acetyle 52.3 7.9 0.0002 18.6 1.5 39 46-92 22-60 (103)
449 PRK00258 aroE shikimate 5-dehy 52.1 17 0.00043 16.4 5.7 28 307-338 246-273 (275)
450 PRK12331 oxaloacetate decarbox 52.1 17 0.00043 16.4 13.7 92 212-324 143-237 (463)
451 COG4472 Uncharacterized protei 52.1 16 0.00042 16.5 3.1 25 327-351 20-44 (88)
452 cd01974 Nitrogenase_MoFe_beta 52.1 17 0.00043 16.4 14.1 21 223-243 174-194 (435)
453 pfam02110 HK Hydroxyethylthiaz 51.9 16 0.00041 16.6 3.1 19 158-176 44-62 (246)
454 PRK08662 nicotinate phosphorib 51.2 18 0.00045 16.3 10.4 89 208-321 199-293 (343)
455 cd00156 REC Signal receiver do 50.3 18 0.00046 16.2 5.2 37 275-312 58-94 (113)
456 cd00740 MeTr MeTr subgroup of 50.1 18 0.00047 16.2 6.8 37 208-244 91-127 (252)
457 pfam00224 PK Pyruvate kinase, 50.0 18 0.00047 16.2 11.0 108 207-336 215-340 (348)
458 TIGR02713 allophanate_hyd allo 49.7 19 0.00047 16.1 4.5 54 264-318 271-346 (582)
459 COG1892 Phosphoenolpyruvate ca 49.5 19 0.00048 16.1 4.5 63 260-322 217-287 (488)
460 pfam06253 MTTB Trimethylamine 49.5 14 0.00036 17.0 2.4 165 132-323 187-383 (505)
461 cd01568 QPRTase_NadC Quinolina 49.2 19 0.00048 16.1 10.9 80 209-323 181-260 (269)
462 PRK07535 methyltetrahydrofolat 49.2 19 0.00048 16.1 6.5 36 207-244 89-124 (268)
463 PRK06978 nicotinate-nucleotide 49.1 19 0.00048 16.1 7.7 75 208-317 198-272 (288)
464 pfam02900 LigB Catalytic LigB 49.0 19 0.00048 16.1 3.2 26 275-300 157-182 (265)
465 cd03318 MLE Muconate Lactonizi 48.8 19 0.00049 16.1 4.5 69 268-343 222-291 (365)
466 PRK05301 pyrroloquinoline quin 48.7 19 0.00049 16.0 12.1 20 223-242 170-189 (375)
467 TIGR01954 nusA_Cterm_rpt trans 48.3 10 0.00025 18.0 1.5 20 330-349 1-20 (52)
468 COG0796 MurI Glutamate racemas 47.9 20 0.0005 16.0 5.3 34 209-249 91-124 (269)
469 TIGR02320 PEP_mutase phosphoen 47.2 20 0.00052 15.9 5.8 100 210-318 72-184 (272)
470 COG1038 PycA Pyruvate carboxyl 46.7 21 0.00052 15.8 9.1 65 269-336 720-791 (1149)
471 pfam07476 MAAL_C Methylasparta 46.5 21 0.00053 15.8 6.8 118 108-245 35-170 (249)
472 PRK00915 2-isopropylmalate syn 46.5 21 0.00053 15.8 11.3 39 209-249 196-235 (511)
473 PRK09016 quinolinate phosphori 46.5 21 0.00053 15.8 7.7 75 208-317 207-281 (296)
474 PRK04460 nickel responsive reg 46.3 18 0.00047 16.2 2.6 11 223-233 109-119 (139)
475 TIGR00373 TIGR00373 conserved 46.2 5.7 0.00014 19.6 -0.0 15 164-178 124-138 (168)
476 PTZ00066 pyruvate kinase; Prov 46.0 21 0.00054 15.8 5.3 109 207-336 249-374 (513)
477 PRK06252 methylcobalamin:coenz 45.8 21 0.00054 15.8 7.9 11 132-142 136-146 (339)
478 cd03321 mandelate_racemase Man 45.8 21 0.00054 15.8 4.3 69 268-343 220-289 (355)
479 TIGR01127 ilvA_1Cterm threonin 45.8 21 0.00054 15.8 5.0 50 69-131 141-197 (381)
480 TIGR02729 Obg_CgtA GTP-binding 45.6 17 0.00044 16.3 2.4 35 95-132 134-183 (296)
481 pfam03841 SelA L-seryl-tRNA se 45.1 19 0.00047 16.1 2.5 110 55-175 85-219 (367)
482 PRK01002 nickel responsive reg 45.1 21 0.00053 15.8 2.7 11 223-233 110-120 (141)
483 PRK00630 nickel responsive reg 45.1 18 0.00046 16.2 2.4 11 223-233 115-125 (143)
484 pfam01964 ThiC ThiC family. Th 45.0 22 0.00056 15.7 5.1 24 295-318 303-326 (421)
485 TIGR01278 DPOR_BchB light-inde 44.9 22 0.00056 15.7 3.4 33 205-241 240-273 (562)
486 TIGR00381 cdhD CO dehydrogenas 44.9 22 0.00056 15.7 4.3 31 270-302 289-324 (401)
487 PRK13384 delta-aminolevulinic 44.5 22 0.00057 15.6 11.7 60 65-140 62-122 (323)
488 cd01320 ADA Adenosine deaminas 43.6 23 0.00058 15.5 12.9 145 160-332 83-232 (325)
489 PRK02271 methylenetetrahydrome 43.6 23 0.00058 15.5 3.9 22 42-63 55-76 (324)
490 pfam00311 PEPcase Phosphoenolp 43.5 23 0.00058 15.5 4.9 25 270-295 369-393 (500)
491 PRK13958 N-(5'-phosphoribosyl) 43.3 23 0.00059 15.5 3.1 37 287-324 152-190 (207)
492 TIGR00067 glut_race glutamate 43.2 23 0.00059 15.5 4.7 120 206-342 84-227 (262)
493 cd01712 ThiI ThiI is required 43.0 23 0.0006 15.5 4.0 12 230-241 97-108 (177)
494 TIGR02751 PEPCase_arch phospho 43.0 23 0.0006 15.5 5.0 100 260-359 227-342 (549)
495 TIGR02903 spore_lon_C ATP-depe 43.0 15 0.00037 16.9 1.7 30 69-98 311-342 (616)
496 pfam03740 PdxJ Pyridoxal phosp 42.9 19 0.00048 16.1 2.2 14 229-242 138-151 (239)
497 TIGR02109 PQQ_syn_pqqE coenzym 42.8 24 0.0006 15.4 7.1 142 132-284 144-289 (363)
498 pfam03662 Glyco_hydro_79n Glyc 42.4 24 0.00061 15.4 3.7 75 275-350 199-280 (320)
499 COG0176 MipB Transaldolase [Ca 42.3 24 0.00061 15.4 8.9 118 212-340 94-229 (239)
500 PRK07896 nicotinate-nucleotide 41.6 24 0.00062 15.3 7.9 64 229-317 211-274 (288)
No 1
>TIGR01036 pyrD_sub2 dihydroorotate oxidase; InterPro: IPR005719 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This model describes dihydroorotate dehydrogenase subfamily 2 and includes members from bacteria and eukaryotes. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus, however subfamily 2 has a longer N-terminal region.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0016020 membrane.
Probab=100.00 E-value=0 Score=773.27 Aligned_cols=349 Identities=44% Similarity=0.697 Sum_probs=335.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH--------HHHCCCCCCCCCCEEEECCEECCCCEEECCCCCCCHHHHHHHHHC
Q ss_conf 999999975089678899999999620--------111046788963116888733599748534688867798887403
Q gi|254780434|r 6 HKLALRGLTHLDPEIAHHLSIVALKSG--------LLSFFPVHSDPRLNTKVAGISLSNPLGMAAGYDKNAEVPIELLKL 77 (362)
Q Consensus 6 ~~~~~~~l~~~~pe~ah~~~~~~~~~~--------~~~~~~~~~~~~L~~~~~Gl~~~nPiglAaG~dk~~~~~~~l~~~ 77 (362)
|.+++++||.||||.||.++...+|.. |+.....+.+|.|+++++|++|+||+||||||||||++++.|-.+
T Consensus 1 Y~Lvr~~lF~lDpE~AH~~~~~~Lr~~~~~~F~~~L~r~~~~~~~P~L~~~vlG~~FpNPlGLAAGfDK~G~a~d~l~Am 80 (370)
T TIGR01036 1 YPLVRKLLFLLDPEKAHELVFQVLRLVAASPFLARLLRSLLGAKDPVLEVTVLGLKFPNPLGLAAGFDKDGEALDALGAM 80 (370)
T ss_pred CCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEECCCCCCCCHHHHCCCCCCHHHHHHHHHH
T ss_conf 95210141589977889999999864125640345578646888788643123410686133423799876699875641
Q ss_pred CCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHH--------HHHCCCCCCEEECCCC--CH
Q ss_conf 6752410200136878998862688425554100002477777889998764--------1000121000110454--24
Q gi|254780434|r 78 GFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSK--------IQPTSPIGINLGANKD--SK 147 (362)
Q Consensus 78 G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~--------~~~~~pi~vsI~~~~~--s~ 147 (362)
||||+|+||||++||+|||+||+||+++++|++|+|||||.|++...+++++ ++++.|||||||+||. .+
T Consensus 81 GFG~~EiGTVTp~pQ~GN~~PRlFRL~e~~~liNRmGFNN~G~~~l~~~~k~~qqkqakla~y~~piGiNiGKNK~t~~~ 160 (370)
T TIGR01036 81 GFGYLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADLLVERLKRFQQKQAKLARYKGPIGINIGKNKKTPAE 160 (370)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHH
T ss_conf 84247541205888667777864254557887632052056799999999986545420278985264324888666544
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 67887765554206755269830333653221100002343211112244455655312688517865057777488899
Q gi|254780434|r 148 DFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDD 227 (362)
Q Consensus 148 ~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ 227 (362)
|+.+||..|++.++++|||+++|||||||||+|+||..+.++++|.++++.+........+.+||+||++||++++++.+
T Consensus 161 ~a~~DY~~~~~~~~~~A~Y~~vN~SSPNTPgLR~LQ~~~~~~~LL~~~k~~~~~L~~~~~KY~P~~VKIAPDL~~~dl~~ 240 (370)
T TIGR01036 161 DAKEDYKACLRKVGPLADYLVVNVSSPNTPGLRDLQYKESLRDLLTAVKEETDGLRRVHRKYVPVLVKIAPDLSESDLLD 240 (370)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH
T ss_conf 22668999999873210707886358897351324014358999999999999999861278857897268988213899
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCC-CCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 999876449829998066555323-4577544-63221135645424689999999740897489996788999999999
Q gi|254780434|r 228 IAVEVLSHKVEGIIVSNTTLSRKG-VQCSDNH-EQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDK 305 (362)
Q Consensus 228 ia~~a~~~g~dGiv~~NT~~~~~~-~~~~~~~-~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~ 305 (362)
||+.++++++||||+||||++|+. +..+... .+.|||||+||...|++.++++++++.+++||||||||+++++|+|+
T Consensus 241 IAd~~v~~~~dG~IATNTT~sR~~Gv~g~k~~r~~~GGLSGkPL~~kS~eiirrL~~~~~gr~piIgVGGI~~~~~A~Ek 320 (370)
T TIGR01036 241 IADSAVELGIDGIIATNTTVSRDLGVTGPKNSREETGGLSGKPLQKKSTEIIRRLYKELKGRLPIIGVGGISSAQNALEK 320 (370)
T ss_pred HHHHHHHCCCCEEEEECCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH
T ss_conf 99999871898489844510252002563214356789887514477899999999996495789962785747889999
Q ss_pred HHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
Q ss_conf 9839997545278770697899999999999999838997789616975
Q gi|254780434|r 306 IMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYT 354 (362)
Q Consensus 306 l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~~~ 354 (362)
|.||||+||+||||+|+||.++++|.++|.+.|++.||.|+.|+||++.
T Consensus 321 I~AGASLlQ~YsgfIy~GP~l~k~i~~~i~~lL~~~GFgsv~eAiGad~ 369 (370)
T TIGR01036 321 IKAGASLLQIYSGFIYKGPPLVKEIVKEIEKLLKEDGFGSVKEAIGADR 369 (370)
T ss_pred HHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCC
T ss_conf 9847124456423466771679999999999975179612244102356
No 2
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=100.00 E-value=0 Score=711.19 Aligned_cols=330 Identities=51% Similarity=0.850 Sum_probs=308.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---HCCCCCCCCCCEEEECCEECCCCEEECCCCCCCHHHHHHHHHCCCC
Q ss_conf 8999999997508967889999999962011---1046788963116888733599748534688867798887403675
Q gi|254780434|r 4 ILHKLALRGLTHLDPEIAHHLSIVALKSGLL---SFFPVHSDPRLNTKVAGISLSNPLGMAAGYDKNAEVPIELLKLGFG 80 (362)
Q Consensus 4 ~~~~~~~~~l~~~~pe~ah~~~~~~~~~~~~---~~~~~~~~~~L~~~~~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G 80 (362)
+||++++|+||++|||+||++++.+|+.... ..+..+++|+|+++++|++|+||||||||||||+++++.+.++|||
T Consensus 1 ~y~~~~~pll~~ldpE~aH~~~~~~l~~~~~~~~~~~~~~~~~~L~~~i~Gl~f~nPiGLAAGfDKn~e~~~~l~~lGFG 80 (336)
T PRK05286 1 MYYPLLRPLLFKLDPERAHELTIRALKRAGRTLLARLLRYKDPRLPVTVMGLTFPNPVGLAAGFDKNGEAIDALGALGFG 80 (336)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEECCEECCCCCEECCCCCCCCCCCCCHHHCCCC
T ss_conf 91899999997699899999999999986135772431589866676888854699675556789997103726656866
Q ss_pred EEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH-CCCCCCEEECCCCC--HHHHHHHHHHH
Q ss_conf 2410200136878998862688425554100002477777889998764100-01210001104542--46788776555
Q gi|254780434|r 81 FVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQP-TSPIGINLGANKDS--KDFILDYVSGI 157 (362)
Q Consensus 81 ~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~-~~pi~vsI~~~~~s--~~~~~dy~~~~ 157 (362)
|+|+||||++||+|||+||+||++++++++|+|||||+|++.+.++|++.+. ..|+|||||+|+++ +++++||.+++
T Consensus 81 fvEvGTVT~~pq~GNpkPR~fRl~~~~aliNr~GfnN~G~~~~~~~L~~~~~~~~~lGvnIg~nk~t~~e~~~~Dy~~~~ 160 (336)
T PRK05286 81 FVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNEGADALAERLKKAKPYKGPLGINIGKNKDTPLEDAVDDYLICL 160 (336)
T ss_pred EEEECCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 69970516998799999717981377637850577986899999999850567886589976237884166899999999
Q ss_pred HHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 42067552698303336532211000023432111122444556553126885178650577774888999998764498
Q gi|254780434|r 158 RLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKV 237 (362)
Q Consensus 158 ~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~ 237 (362)
++++++|||+|||+|||||+|+|.+|+++.+++++.++...+.. ...++|||+|||||++++++.++++++.++++
T Consensus 161 ~~l~~~aDy~~INiSsPNT~glr~lq~~~~L~~ll~~v~~~~~~----~~~~~PI~vKisPDl~~~~l~~i~~~~~~~~i 236 (336)
T PRK05286 161 RKLYPYADYFTVNISSPNTPGLRDLQAGEALDELLAALKEAQAE----LGKYVPLLLKIAPDLSDEELDDIADLALEHGI 236 (336)
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH----CCCCCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99826377899975689986520004669999999999999984----37888648832888887899999999998198
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECH
Q ss_conf 29998066555323457754463221135645424689999999740897489996788999999999983999754527
Q gi|254780434|r 238 EGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYS 317 (362)
Q Consensus 238 dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~T 317 (362)
||++++|||++|+.+. .....+.|||||+||++.|+++|+++|+.+++++||||||||+|++||++++.||||+||+||
T Consensus 237 dGii~tNTt~~r~~l~-~~~~~~~GGLSG~pl~~~s~~~v~~~~~~~~~~~pIIgvGGI~s~~da~~~i~aGAslVQlyT 315 (336)
T PRK05286 237 DGIIATNTTLDRSGLE-GPNAEEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYS 315 (336)
T ss_pred CEEEEECCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHH
T ss_conf 6899958867664456-655566687464067899999999999973999709998998999999999986996887416
Q ss_pred HHHCCCHHHHHHHHHHHHHHH
Q ss_conf 877069789999999999999
Q gi|254780434|r 318 AMIYEGISLPKRIIQGLSDFL 338 (362)
Q Consensus 318 ali~~Gp~~~~~I~~~L~~~l 338 (362)
+++|+||.++++|++||.++|
T Consensus 316 gliy~GP~lv~~I~~~L~~lL 336 (336)
T PRK05286 316 GLIYEGPGLVKEIVRGLARLL 336 (336)
T ss_pred HHHHCCHHHHHHHHHHHHHHC
T ss_conf 787219079999999999759
No 3
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=100.00 E-value=0 Score=695.02 Aligned_cols=321 Identities=54% Similarity=0.836 Sum_probs=301.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHC---CCCCCCCCCEEEECCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCC
Q ss_conf 999750896788999999996201110---46788963116888733599748534688867798887403675241020
Q gi|254780434|r 10 LRGLTHLDPEIAHHLSIVALKSGLLSF---FPVHSDPRLNTKVAGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGT 86 (362)
Q Consensus 10 ~~~l~~~~pe~ah~~~~~~~~~~~~~~---~~~~~~~~L~~~~~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~kt 86 (362)
+|+||++|||+||++++.+|+...... +..+++++|+++++|++|+||||||||||||+++++.+.++||||+|+||
T Consensus 1 rp~l~~l~pE~aH~~~~~~l~~~~~~~~~~~~~~~~~~l~~~i~Gl~f~nPiGlAAGfDKn~~~~~~~~~lGfGfvevGT 80 (327)
T cd04738 1 RPLLFLLDPETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAAGFDKNAEAIDALLALGFGFVEVGT 80 (327)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEECCEECCCCCEECCCCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 98011499799999999999850647640103689966556888755699586545889885899999966986799714
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH-CCCCCCEEECCCCC--HHHHHHHHHHHHHHCCC
Q ss_conf 0136878998862688425554100002477777889998764100-01210001104542--46788776555420675
Q gi|254780434|r 87 VTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQP-TSPIGINLGANKDS--KDFILDYVSGIRLFFTI 163 (362)
Q Consensus 87 it~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~-~~pi~vsI~~~~~s--~~~~~dy~~~~~~~~~~ 163 (362)
||++||+|||+||+||++++++++|+|||||+|++++.++|++.+. +.|+|||||+|+++ +++++||.+++++++++
T Consensus 81 VT~~pq~GNpkPRifRl~~~~aiiN~~GfnN~G~~~~~~~L~~~~~~~~~lgvnIg~nk~t~~e~~~~Dy~~~~~~l~~~ 160 (327)
T cd04738 81 VTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPY 160 (327)
T ss_pred CCCCCCCCCCCCCEEECCCCCEEEHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 36888889999857974675401100458717699999999840456871799985047882676899999999985355
Q ss_pred CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 52698303336532211000023432111122444556553126885178650577774888999998764498299980
Q gi|254780434|r 164 ASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVS 243 (362)
Q Consensus 164 aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~ 243 (362)
|||+|||+|||||+|+|.+|+++.+.+++.++++.+... ..++|||+|||||++++++.++++++.++|+||++++
T Consensus 161 aDy~~iNiSsPNt~glr~lq~~~~l~~ll~~v~~~~~~~----~~~~Pi~vKlsPD~~~~~i~~i~~~~~~~g~dGvi~t 236 (327)
T cd04738 161 ADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKL----GKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIAT 236 (327)
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC----CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 778999546889845100268899999999999999853----7788669981799766789999999997399789995
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 66555323457754463221135645424689999999740897489996788999999999983999754527877069
Q gi|254780434|r 244 NTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEG 323 (362)
Q Consensus 244 NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~G 323 (362)
|||.+|+.+.......+.|||||+||+++|+++|+++|+.+++++||||||||+|++||+|++.||||+||+||+++|+|
T Consensus 237 NTt~~r~~~~~~~~~~~~GGlSG~pl~~~s~~~v~~v~~~~~~~~pIIgvGGI~s~~Da~e~i~aGAslVQiyT~liy~G 316 (327)
T cd04738 237 NTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEG 316 (327)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 88555421245655566686364067899999999999974999819998897999999999986996998768989319
Q ss_pred HHHHHHHHHHH
Q ss_conf 78999999999
Q gi|254780434|r 324 ISLPKRIIQGL 334 (362)
Q Consensus 324 p~~~~~I~~~L 334 (362)
|.++++|++||
T Consensus 317 P~li~~I~~~L 327 (327)
T cd04738 317 PGLVKRIKREL 327 (327)
T ss_pred CHHHHHHHHHC
T ss_conf 06999998219
No 4
>KOG1436 consensus
Probab=100.00 E-value=0 Score=637.30 Aligned_cols=347 Identities=49% Similarity=0.768 Sum_probs=326.3
Q ss_pred HHH-HHHHHHHCC-CHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEECCCCEEECCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 999-999997508-967889999999962011104678896311688873359974853468886779888740367524
Q gi|254780434|r 5 LHK-LALRGLTHL-DPEIAHHLSIVALKSGLLSFFPVHSDPRLNTKVAGISLSNPLGMAAGYDKNAEVPIELLKLGFGFV 82 (362)
Q Consensus 5 ~~~-~~~~~l~~~-~pe~ah~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v 82 (362)
+|. .+.|.++.+ |||++|+++..++..+|+|+....++.+|.++++|.+|.||||+||||||+++.+..|.+.||||+
T Consensus 42 f~~~~~mp~~~~lld~E~sHrlAv~aas~gl~Pr~~~~d~~~L~~k~~g~~f~NPiglAAGfdk~~eaidgL~~~gfG~i 121 (398)
T KOG1436 42 FYARIVMPPFHALLDPEFSHRLAVLAASWGLLPRDRVADDASLETKVLGRKFSNPIGLAAGFDKNAEAIDGLANSGFGFI 121 (398)
T ss_pred EEEEEECCHHHHHCCHHHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHCCCCEE
T ss_conf 55333124166407977777999999771777510057865224677401026830132135754688888874787649
Q ss_pred ECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH----H--CCCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 1020013687899886268842555410000247777788999876410----0--012100011045424678877655
Q gi|254780434|r 83 EIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ----P--TSPIGINLGANKDSKDFILDYVSG 156 (362)
Q Consensus 83 ~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~----~--~~pi~vsI~~~~~s~~~~~dy~~~ 156 (362)
++||||+.||+|||+||+||+++|.++||+|||||+|++++++++.+.+ + ..++|||+++|+.|+|+..||++.
T Consensus 122 eigSvTp~pqeGNPkPRvfrl~ed~~vINryGfns~Gi~~vl~rl~~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~g 201 (398)
T KOG1436 122 EIGSVTPKPQEGNPKPRVFRLPEDLAVINRYGFNSEGIDAVLQRLRAKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEG 201 (398)
T ss_pred EECCCCCCCCCCCCCCCEEECCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 95465457878999985686265423001057884249999999998887317886532105623465774567889987
Q ss_pred HHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC
Q ss_conf 54206755269830333653221100002343211112244455655312688517865057777488899999876449
Q gi|254780434|r 157 IRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHK 236 (362)
Q Consensus 157 ~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g 236 (362)
++.+.++|||++||+|||||+|+|.+|....|.+++..+..++.... ...+.|+++|++||+...++.+++.++.+.+
T Consensus 202 V~~~g~~adylviNvSsPNtpGlr~lq~k~~L~~ll~~v~~a~~~~~--~~~~~pvl~kiapDL~~~el~dia~v~kk~~ 279 (398)
T KOG1436 202 VRVFGPFADYLVINVSSPNTPGLRSLQKKSDLRKLLTKVVQARDKLP--LGKKPPVLVKIAPDLSEKELKDIALVVKKLN 279 (398)
T ss_pred HHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 65124546658995569998662655327789999999999886045--6889865888565242778989999999837
Q ss_pred CCEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 8299980665553-234577544632211356454246899999997408974899967889999999999839997545
Q gi|254780434|r 237 VEGIIVSNTTLSR-KGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQL 315 (362)
Q Consensus 237 ~dGiv~~NT~~~~-~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi 315 (362)
+||++..||+++| +.........++|||||+|++|+|+.+|+++|+++.+++||||||||+|++||+|+++||||+||+
T Consensus 280 idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlvQl 359 (398)
T KOG1436 280 IDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLVQL 359 (398)
T ss_pred CCCEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCCHHHHH
T ss_conf 56366138566247101016664356887898663668999999998636887468416856547699998627139988
Q ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
Q ss_conf 27877069789999999999999983899778961697
Q gi|254780434|r 316 YSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSY 353 (362)
Q Consensus 316 ~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~~ 353 (362)
||+|.|+||.++.+|++||.+.|+++||.++.|+||+.
T Consensus 360 yTal~yeGp~i~~kIk~El~~ll~~kG~t~v~d~iG~~ 397 (398)
T KOG1436 360 YTALVYEGPAIIEKIKRELSALLKAKGFTSVDDAIGKD 397 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCC
T ss_conf 88776267435889998899999750777398860577
No 5
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=606.80 Aligned_cols=300 Identities=40% Similarity=0.643 Sum_probs=280.1
Q ss_pred CCEEEECCEECCCCEEECCCCC-CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHH
Q ss_conf 3116888733599748534688-867798887403675241020013687899886268842555410000247777788
Q gi|254780434|r 44 RLNTKVAGISLSNPLGMAAGYD-KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHT 122 (362)
Q Consensus 44 ~L~~~~~Gl~~~nPiglAaG~d-k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~ 122 (362)
+|+++++|++|+||+|+|||+| |+++.+..+.+.||||+|+||+|++||+|||+||+||++++.+++|+|||||+|+++
T Consensus 1 ~l~~~~~Gl~f~NPl~lAaG~~~~~~~~~~~~~~~g~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~N~G~~~ 80 (310)
T COG0167 1 DLSTEILGLKFPNPLGLAAGFDGKNGEELDALAALGFGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFNNPGADA 80 (310)
T ss_pred CCCEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHCCCCCHHHHH
T ss_conf 97403564664997767455786577899999855785699667777777899998178715753088754898652899
Q ss_pred HHHHHHHHHHCC-CCCCEEECCCCC--HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHHH
Q ss_conf 999876410001-210001104542--4678877655542067552698303336532211000-023432111122444
Q gi|254780434|r 123 VFSRLSKIQPTS-PIGINLGANKDS--KDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQ-KKKNLERLLIHVMQT 198 (362)
Q Consensus 123 ~~~~l~~~~~~~-pi~vsI~~~~~s--~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~-~~~~l~~~l~~v~~~ 198 (362)
+++++++.+... |++++|++|+.+ +++++||..+++++++ +||+|+|+|||||++++.+| +++.+.+++.++++.
T Consensus 81 ~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~-ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~ 159 (310)
T COG0167 81 FLEELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGD-ADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAA 159 (310)
T ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHC
T ss_conf 9999886400147767634887578857889999999975077-887999853899977466543999999999999863
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC----CCCCCCCCCCCCCCCCHHHH
Q ss_conf 55655312688517865057777488899999876449829998066555323457----75446322113564542468
Q gi|254780434|r 199 REEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQC----SDNHEQDGGLSGSPLFLKST 274 (362)
Q Consensus 199 ~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~----~~~~~~~GGlSG~~i~~~al 274 (362)
. ++||+|||+| +.+++.++|+++.++|+||++++||+.+++..+. +....+.|||||++|+|+|+
T Consensus 160 ~---------~~Pv~vKl~P--~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~i~~~~~~~~~~~~~GGLSG~~ikp~al 228 (310)
T COG0167 160 T---------KVPVFVKLAP--NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIAL 228 (310)
T ss_pred C---------CCCEEEEECC--CHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 5---------6865999388--8899999999999749858999700366553012345556676777757510027899
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
Q ss_conf 99999997408974899967889999999999839997545278770697899999999999999838997789616975
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYT 354 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~~~ 354 (362)
++|+++|+++++++||||+|||+|++||+|||+|||++||||||++|+||.++++|.++|.+||+++||+||+|++|...
T Consensus 229 ~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~g~~si~d~~G~~~ 308 (310)
T COG0167 229 RVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLEEKGFESIQDIIGSAL 308 (310)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHCHHC
T ss_conf 99999998428997489846869699999999829756404112102085099999999999999819987999845330
Q ss_pred H
Q ss_conf 2
Q gi|254780434|r 355 E 355 (362)
Q Consensus 355 ~ 355 (362)
+
T Consensus 309 ~ 309 (310)
T COG0167 309 R 309 (310)
T ss_pred C
T ss_conf 5
No 6
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase family protein; InterPro: IPR005720 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This describes dihydroorotate dehydrogenases subfamily 1 that includes a number of uncharacterised proteins and a domain of dihydropyrimidine dehydrogenase.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=579.83 Aligned_cols=292 Identities=25% Similarity=0.408 Sum_probs=263.4
Q ss_pred CEEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHH
Q ss_conf 1168887335997485346-888677988874036752410200136878998862688425554100002477777889
Q gi|254780434|r 45 LNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTV 123 (362)
Q Consensus 45 L~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~ 123 (362)
|+|++||++|+||++|||| ++-..+..++...-|+|+|+|||+|.+||+||+.||+.+.+ .+++|+|||+|||+|.+
T Consensus 1 Lev~l~Gi~~kNP~~lASG~~G~~~~~l~~~~~~gaGAVvTKs~g~~pr~Gy~nPtiVE~~--~G~lNAiGL~NPG~e~f 78 (308)
T TIGR01037 1 LEVELFGIRFKNPVILASGVMGSGVEALRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVEVP--CGLLNAIGLQNPGVEAF 78 (308)
T ss_pred CCEECCCCCCCCCCEEECCCCCCCHHHHHHHHCCCCCEEEECCEECCCCCCCCCCEEEECC--CCEEEECCCCCHHHHHH
T ss_conf 9111067021066102211036628899987505886378621331588854438079817--85575235898217999
Q ss_pred HHHHHHHHHCCC-----CCCEEECCCCCHHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCC---CCCCCCHHHHHHHH
Q ss_conf 998764100012-----10001104542467887765554206---75526983033365322---11000023432111
Q gi|254780434|r 124 FSRLSKIQPTSP-----IGINLGANKDSKDFILDYVSGIRLFF---TIASYFTINISSPNTPG---LRSLQKKKNLERLL 192 (362)
Q Consensus 124 ~~~l~~~~~~~p-----i~vsI~~~~~s~~~~~dy~~~~~~~~---~~aD~iEiNiSCPNt~g---~~~~~~~~~l~~~l 192 (362)
+++++....+.| +++||-+. ..+||++++++++ +|+|++|||+||||+++ ....|||+...+++
T Consensus 79 l~E~~~~~~e~~t~dvr~I~svyG~-----~~EEfa~va~~~e~A~~y~~~~ELN~SCPhvK~G~G~~iG~dP~l~~~vv 153 (308)
T TIGR01037 79 LEELKDVREEVPTHDVRLIASVYGE-----SEEEFAEVAEKLEDADPYVDAYELNVSCPHVKGGGGIEIGQDPELSADVV 153 (308)
T ss_pred HHHHHHHHHCCCCCCEEEEEEECCC-----CCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9863256643898752899983188-----82258999998721134400001047774434234655477877999999
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-CCC---CCCCCCCCCCCCCCCCCC
Q ss_conf 1224445565531268851786505777748889999987644982999806655-532---345775446322113564
Q gi|254780434|r 193 IHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTL-SRK---GVQCSDNHEQDGGLSGSP 268 (362)
Q Consensus 193 ~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~-~~~---~~~~~~~~~~~GGlSG~~ 268 (362)
+++++. +++||++|||||++ ++.++|++++++|+||+|++||+. .+. ....|...+..||||||+
T Consensus 154 ~avK~~---------~d~Pv~aKLsPNV~--Di~eiA~a~eeaGaDGlt~INTl~PGMkIDI~~~kPiLaNk~GGlSGPA 222 (308)
T TIGR01037 154 KAVKDK---------VDVPVFAKLSPNVT--DITEIAKAAEEAGADGLTLINTLRPGMKIDIKAKKPILANKTGGLSGPA 222 (308)
T ss_pred HHHHCC---------CCCCEEEECCCCHH--HHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCEECCCCCCCCC
T ss_conf 998300---------07865786486566--8999988875327761640012034677734207870000458850750
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 54246899999997408974899967889999999999839997545278770697899999999999999838997789
Q gi|254780434|r 269 LFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFEN 348 (362)
Q Consensus 269 i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e 348 (362)
|+|+|+|+||++|+.+++++||||||||+||+||+|||+||||||||+||.+|+||.++.+|+++|.+||++.||+||+|
T Consensus 223 IKPiA~r~VYdly~~~ddriPIiGvGGi~~~eDA~Efl~AGAsAVQvGtAvyy~g~~~f~~i~~~l~~fl~~~~~~si~e 302 (308)
T TIGR01037 223 IKPIAVRMVYDLYKEVDDRIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGYKVFKKIIEGLIAFLKEEGFSSIEE 302 (308)
T ss_pred CCCEEEEEHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 14221210000477737823468632745589999999852202200022211775244888767889998728964477
Q ss_pred HHCCCC
Q ss_conf 616975
Q gi|254780434|r 349 IRGSYT 354 (362)
Q Consensus 349 ~iG~~~ 354 (362)
+||.+.
T Consensus 303 ~iG~Ah 308 (308)
T TIGR01037 303 LIGLAH 308 (308)
T ss_pred HHCCCC
T ss_conf 401369
No 7
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=100.00 E-value=0 Score=564.71 Aligned_cols=291 Identities=25% Similarity=0.351 Sum_probs=257.3
Q ss_pred CCEEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHH
Q ss_conf 31168887335997485346-88867798887403675241020013687899886268842555410000247777788
Q gi|254780434|r 44 RLNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHT 122 (362)
Q Consensus 44 ~L~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~ 122 (362)
+|+|+++|++|+|||++||| ||+|++.++.+.++||||+|+||||++||+|||+||+||++ .+++|+|||||+|+++
T Consensus 1 rL~~~~~Gl~f~nPi~lAAG~~~~~~~~~~~~~~~G~G~v~~kTit~~p~~Gnp~Pr~~~~~--~~~iN~~G~~n~G~~~ 78 (301)
T PRK07259 1 RLSVNLPGLKLKNPVMPASGTFGFGGEYAKFYDLNGLGAIVTKSTTLEPREGNPTPRIAETP--GGMLNAVGLQNPGVDA 78 (301)
T ss_pred CCEEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEECC--CCCCCCCCCCCCCHHH
T ss_conf 96289799876997487766899999999999986975899172160402699998589666--2100346678835999
Q ss_pred HHHHHHHHH--HCCCCCCEEECCCCCHHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCC--CCCCCCHHHHHHHHHHHH
Q ss_conf 999876410--001210001104542467887765554206--75526983033365322--110000234321111224
Q gi|254780434|r 123 VFSRLSKIQ--PTSPIGINLGANKDSKDFILDYVSGIRLFF--TIASYFTINISSPNTPG--LRSLQKKKNLERLLIHVM 196 (362)
Q Consensus 123 ~~~~l~~~~--~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~--~~aD~iEiNiSCPNt~g--~~~~~~~~~l~~~l~~v~ 196 (362)
+++++.+.+ .+.|+|+||+++ ..+||.++++.+. ++|||+|||+|||||++ .+..++++.+.+++.+++
T Consensus 79 ~~~~~~~~~~~~~~pvi~si~~~-----~~~d~~~~~~~l~~~~~ad~ielNiScPn~~~~g~~~~~~~~~l~~i~~~v~ 153 (301)
T PRK07259 79 FIEEELPWLEEFDTPIIANIAGS-----TPEEYVEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVK 153 (301)
T ss_pred HHHHHHHHHHHCCCCEEEECCCC-----CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999976420699879973767-----7689999999864556888899965478888526660879999999999998
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC---CCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 4455655312688517865057777488899999876449829998066555323---4577544632211356454246
Q gi|254780434|r 197 QTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKG---VQCSDNHEQDGGLSGSPLFLKS 273 (362)
Q Consensus 197 ~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~---~~~~~~~~~~GGlSG~~i~~~a 273 (362)
. ..++||+||||||++ ++.+++++++++|+||++++||+.+++. ...+....+.|||||++++|++
T Consensus 154 ~---------~~~~Pv~vKlsP~~~--~i~~ia~~~~~~gadgvv~~Nt~~~~~id~~~~~p~~~~~~GGlSG~~l~~~a 222 (301)
T PRK07259 154 S---------VSKVPVIVKLTPNVT--DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIA 222 (301)
T ss_pred H---------HCCCCEEEEECCCHH--HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 7---------348977998078712--19999999997599889995677676532356774335788863473351899
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
Q ss_conf 89999999740897489996788999999999983999754527877069789999999999999983899778961697
Q gi|254780434|r 274 TIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSY 353 (362)
Q Consensus 274 l~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~~ 353 (362)
+++|+++++.+ ++||||+|||+|++||+|+|+||||+||+||+ +|+||.++++|++||.+||+++||+||+|+||.+
T Consensus 223 l~~v~~~~~~~--~ipIig~GGI~s~~da~e~i~aGAs~VQv~Ta-v~~Gp~~~~~i~~~L~~~l~~~G~~si~e~~G~a 299 (301)
T PRK07259 223 LRMVYQVAKAV--DIPIIGMGGISTAEDAIEFMMAGASAVQVGTA-NFIDPYAFPEIIEGLEAYLDEEGIKSIEEIIGIA 299 (301)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH-HHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHCHH
T ss_conf 99999998516--98889767979999999999839879872123-3149069999999999999984999899971813
Q ss_pred CH
Q ss_conf 52
Q gi|254780434|r 354 TE 355 (362)
Q Consensus 354 ~~ 355 (362)
.+
T Consensus 300 hr 301 (301)
T PRK07259 300 HK 301 (301)
T ss_pred CC
T ss_conf 29
No 8
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=100.00 E-value=0 Score=560.68 Aligned_cols=295 Identities=24% Similarity=0.341 Sum_probs=254.7
Q ss_pred CCEEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHH
Q ss_conf 31168887335997485346-88867798887403675241020013687899886268842555410000247777788
Q gi|254780434|r 44 RLNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHT 122 (362)
Q Consensus 44 ~L~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~ 122 (362)
+++|+++|++|+||||+||| +|+|++.++.+.++||||||+||||++||+|||+||+||++ .+++|+|||||+|+++
T Consensus 1 ~~st~~~Gl~f~NPi~lAaG~~~~~~e~~~~~~~~G~G~v~~kTit~~pq~GNp~PR~~r~~--~~~iN~~G~~n~G~~~ 78 (308)
T PRK02506 1 STATQIAGFSFDNCLMNAAGVYCMTKEELEEVEASQAGSFVTKTATLEVRPGNPEPRYADTP--LGSINSMGLPNNGFDY 78 (308)
T ss_pred CCCEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEECC--CCHHHCCCCCCHHHHH
T ss_conf 98879899955998887867899899999999976973899542354576699998699767--5301215478563899
Q ss_pred HHHHHHHHH---HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHHH
Q ss_conf 999876410---0012100011045424678877655542067552698303336532211000-023432111122444
Q gi|254780434|r 123 VFSRLSKIQ---PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQ-KKKNLERLLIHVMQT 198 (362)
Q Consensus 123 ~~~~l~~~~---~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~-~~~~l~~~l~~v~~~ 198 (362)
+++++.+.+ .+.|+++||.+. +.+++.++.+.++. .+++|++|||+|||||+|++.++ +.+.+.+++.++...
T Consensus 79 ~~~~l~~~~~~~~~~~vi~si~g~--~~~e~~~~~~~~~~-~~~~~~ielNiScPNt~g~~~~~~d~~~~~~il~~v~~~ 155 (308)
T PRK02506 79 YLDYVLDLQKTGPHKPHFLSVVGL--SPEETHTILKKIQA-SDFEGLVELNLSCPNVPGKPQIAYDFETTDQILTEVFTY 155 (308)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEC--CHHHHHHHHHHHHH-CCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999889999627999758888507--75377888999875-475425546333788510555522899999999999987
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC----CCCCCCCCCCCCCCCCCHHHH
Q ss_conf 5565531268851786505777748889999987644982999806655532345----775446322113564542468
Q gi|254780434|r 199 REEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQ----CSDNHEQDGGLSGSPLFLKST 274 (362)
Q Consensus 199 ~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~----~~~~~~~~GGlSG~~i~~~al 274 (362)
.++||++|||||++..++.++++.+.+.++++++++||+.+...+. ......+.|||||++|+|+|+
T Consensus 156 ---------~~~Pi~vKlsP~~~~~~~~~~a~~~~~~~~~~i~~~nt~~~~~~i~~~~~~~~~~~~~GGlSG~~l~~~al 226 (308)
T PRK02506 156 ---------FTKPLGVKLPPYFDIVHFDQAAAIFNKYPLAFVNCVNSIGNGLVIEDESVVIKPKNGFGGIGGDYIKPTAL 226 (308)
T ss_pred ---------HHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf ---------50333455898777676999999856156537988702356620137751015678878877611337999
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf 999999974089748999678899999999998399975452787706978999999999999998389977896169
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGS 352 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~ 352 (362)
++|+++++++.+++||||||||+|++||+|||+||||+||+||+++|+||.++++|++||.+||+++||+||+|++|+
T Consensus 227 ~~v~~~~~~~~~~i~IIg~GGI~s~~Da~e~i~aGAs~VQv~Tal~~~Gp~~~~~I~~~L~~~l~~~G~~si~d~~G~ 304 (308)
T PRK02506 227 ANVHAFYQRLKPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAIFERITKELKAIMVEKGYQSLEDFRGK 304 (308)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHCCE
T ss_conf 999999998389963898667078999999998198720684222045947999999999999998499988996544
No 9
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=100.00 E-value=0 Score=552.56 Aligned_cols=287 Identities=25% Similarity=0.387 Sum_probs=250.1
Q ss_pred EEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHH
Q ss_conf 168887335997485346-8886779888740367524102001368789988626884255541000024777778899
Q gi|254780434|r 46 NTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVF 124 (362)
Q Consensus 46 ~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~ 124 (362)
+|+++|++|+||||+||| ++++.+..+.+...||||+|+||||++||+|||+||+||++ .+++|+|||||+|+++++
T Consensus 1 sv~~~Gl~~~nPi~lAAG~~~~~~~~~~~~~~~g~G~v~~~Tvt~~p~~Gn~~PR~~~~~--~~~iN~~G~~n~G~~~~~ 78 (296)
T cd04740 1 SVELAGLRLKNPVILASGTFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETP--GGMLNAIGLQNPGVEAFL 78 (296)
T ss_pred CEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEECC--HHHHHHCCCCCCCHHHHH
T ss_conf 968898857998787867899839999998858963899380470314589998178154--116765237888648999
Q ss_pred HHHHHHH--HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCC--CCCCCHHHHHHHHHHHHHHH
Q ss_conf 9876410--00121000110454246788776555420675-5269830333653221--10000234321111224445
Q gi|254780434|r 125 SRLSKIQ--PTSPIGINLGANKDSKDFILDYVSGIRLFFTI-ASYFTINISSPNTPGL--RSLQKKKNLERLLIHVMQTR 199 (362)
Q Consensus 125 ~~l~~~~--~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~-aD~iEiNiSCPNt~g~--~~~~~~~~l~~~l~~v~~~~ 199 (362)
+++++.+ .+.|+++||++. ..+||.++++.+.++ |||+|||+|||||+++ ...++++.+.+++.+++.
T Consensus 79 ~~l~~~~~~~~~pvi~si~~~-----~~~d~~~~~~~~~~~gad~ielNiScPNt~~~g~~~~~~~~~~~~i~~~vk~-- 151 (296)
T cd04740 79 EELLPWLREFGTPVIASIAGS-----TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKK-- 151 (296)
T ss_pred HHHHHHHCCCCCEEEEEECCC-----CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHH--
T ss_conf 878986356897189981689-----8789999999988648988999788998676367757499999999999986--
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 5655312688517865057777488899999876449829998066555323---4577544632211356454246899
Q gi|254780434|r 200 EEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKG---VQCSDNHEQDGGLSGSPLFLKSTIA 276 (362)
Q Consensus 200 ~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~---~~~~~~~~~~GGlSG~~i~~~al~~ 276 (362)
..++||+||||||.+ ++.++++++.++|+|||+++||+..+.. ...+....+.|||||++++|+++++
T Consensus 152 -------~~~~Pi~vKlsP~~~--~i~~ia~~~~~~g~dgiv~~NT~~~~~id~~~~~p~l~~~~GGlSG~~l~~~al~~ 222 (296)
T cd04740 152 -------ATDVPVIVKLTPNVT--DIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRM 222 (296)
T ss_pred -------CCCCCEEEECCCCCC--HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf -------048966997189800--09999999997699889997467876636444675524557876867788999999
Q ss_pred HHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
Q ss_conf 99999740897489996788999999999983999754527877069789999999999999983899778961697
Q gi|254780434|r 277 LAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSY 353 (362)
Q Consensus 277 i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~~ 353 (362)
|+++++.+ ++||||||||+|++||+|+|+||||+||+||+ +|+||.++++|++||.+||++|||+||+|+||.+
T Consensus 223 v~~~~~~~--~ipIig~GGI~s~~da~e~i~aGAs~VQi~Ta-i~~Gp~~i~~i~~~L~~~l~~~G~~si~e~~G~a 296 (296)
T cd04740 223 VYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTA-NFVDPEAFKEIIEGLEAYLDEEGIKSIEELVGLA 296 (296)
T ss_pred HHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH-HHCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCC
T ss_conf 99998545--88879757979999999999839988872366-7429279999999999999983999899950359
No 10
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=100.00 E-value=0 Score=515.89 Aligned_cols=278 Identities=25% Similarity=0.310 Sum_probs=242.0
Q ss_pred EEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHH
Q ss_conf 68887335997485346-88867798887403675241020013687899886268842555410000247777788999
Q gi|254780434|r 47 TKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFS 125 (362)
Q Consensus 47 ~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~ 125 (362)
|++.|++|+|||++||| +|+|+|+++.++++||||||+||||++||+|||+||+||++ .+++|+|||+|+|+|++++
T Consensus 1 vt~~Gl~~~NPi~~AaG~~~~~~e~~~~l~~~G~G~v~~kTit~~p~~GNp~PR~~r~~--~~~iN~~G~~n~G~~~~~~ 78 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPWCTTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFP--LGSINSLGLPNLGLDYYLE 78 (294)
T ss_pred CCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECC--CHHHHHCCCCCCCHHHHHH
T ss_conf 90689828997887458999999999999976960999284387677799998488555--1466644478848899999
Q ss_pred HHHHHH-----HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHHHH
Q ss_conf 876410-----0012100011045424678877655542067552698303336532211000-0234321111224445
Q gi|254780434|r 126 RLSKIQ-----PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQ-KKKNLERLLIHVMQTR 199 (362)
Q Consensus 126 ~l~~~~-----~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~-~~~~l~~~l~~v~~~~ 199 (362)
++++.+ .+.|+++||+++ ++|.+++|..+++....++||+|||+|||||++.+.++ +.+.+.+++.+++.
T Consensus 79 ~l~~~~~~~~~~~~pvi~si~g~--~~d~~~~~~~~~~~~~~~aD~ielNiScPn~~g~~~~~~~~~~~~~~~~~v~~-- 154 (294)
T cd04741 79 YIRTISDGLPGSAKPFFISVTGS--AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKA-- 154 (294)
T ss_pred HHHHHHHHCCCCCCCEEEECCCC--CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHH--
T ss_conf 99998654655587089989998--36799999999865225564799970378988731001399999999999984--
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCC------CCCCCCCCCCCCCCCCCCH
Q ss_conf 565531268851786505777748889999987644--98299980665553234------5775446322113564542
Q gi|254780434|r 200 EEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSH--KVEGIIVSNTTLSRKGV------QCSDNHEQDGGLSGSPLFL 271 (362)
Q Consensus 200 ~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~--g~dGiv~~NT~~~~~~~------~~~~~~~~~GGlSG~~i~~ 271 (362)
..++||++|||||.+.+++..+++++.++ ++++++++||+.....+ .......+.|||||++|+|
T Consensus 155 -------~~~~Pv~vKlsP~~~~~~~~~~~~~~~~~~~g~~~i~~~nt~~~~l~id~~~~~~~~~~~~~~GGlSG~~l~p 227 (294)
T cd04741 155 -------AYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHP 227 (294)
T ss_pred -------CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf -------1578559972898887899999999865788747999880367763335776564334556666667852158
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 468999999974089748999678899999999998399975452787706978999999999999
Q gi|254780434|r 272 KSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDF 337 (362)
Q Consensus 272 ~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~ 337 (362)
+++++|+++|+.++++++|||||||+|++||+|||+||||+||+|||++|+||.++++|++||++.
T Consensus 228 ~al~~v~~~~~~~~~~i~Iig~GGI~s~~da~e~i~aGAs~VQv~Tal~~~Gp~~~~~I~~~L~el 293 (294)
T cd04741 228 LALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFARIEKELEDI 293 (294)
T ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 999999999997499987999899799999999998399799997999970929999999879965
No 11
>PRK08318 dihydropyrimidine dehydrogenase; Validated
Probab=100.00 E-value=0 Score=509.16 Aligned_cols=298 Identities=20% Similarity=0.277 Sum_probs=249.6
Q ss_pred CCCEEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCC---
Q ss_conf 631168887335997485346-8886779888740367524102001368789988626884255541000024777---
Q gi|254780434|r 43 PRLNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNA--- 118 (362)
Q Consensus 43 ~~L~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~--- 118 (362)
.||+|+|+|++|+|||++||| +..+++.++++++.||||||+||++ .|+.+|++||++++.. ...|.+||+|.
T Consensus 2 ~DLst~~~Gl~lkNP~~lASgp~t~~~~~i~~~~~aG~GaVV~KTl~-~~~~~~~~pr~~~~~~--~~~~~~G~~N~eli 78 (413)
T PRK08318 2 ADLSITFCGIKSPNPFWLASAPPTNKYYNVARAFEAGWGGVVWKTLG-PFIVNVSSPRFDALVK--EDRRFIGFNNIELI 78 (413)
T ss_pred CCCEEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCEEEEECCCC-CCCCCCCCCCEEEECC--CCCCCCCCCCCCCC
T ss_conf 86228889998189767898678899999999987695399905078-7677889998257357--76242362374213
Q ss_pred ---CHHHHHHHHHHHHH---CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC-----CCHHH
Q ss_conf ---77889998764100---01210001104542467887765554206755269830333653221100-----00234
Q gi|254780434|r 119 ---GYHTVFSRLSKIQP---TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSL-----QKKKN 187 (362)
Q Consensus 119 ---G~~~~~~~l~~~~~---~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~-----~~~~~ 187 (362)
+++++++++++.+. +.|+++||+++. ++++|.++++.++..+ ||+||||+||||+++.+.+ |+++.
T Consensus 79 sd~~le~~L~~i~~~k~~~P~~~vIaSI~g~~-~~e~w~~la~~~e~~G--aDalELNiSCPn~~~~~~~G~~~gq~pe~ 155 (413)
T PRK08318 79 TDRPLEVNLREIRRVKRDYPDRALIASIMVEC-NEEEWKEIAPLVEETG--ADGIELNFGCPHGMSERGMGSAVGQVPEL 155 (413)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEEECCC-CHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCHHHCCCHHH
T ss_conf 44589999999999886078970899994587-8899999999866518--87799955567766666555110579999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC--------CCC
Q ss_conf 321111224445565531268851786505777748889999987644982999806655532345775--------446
Q gi|254780434|r 188 LERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSD--------NHE 259 (362)
Q Consensus 188 l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~--------~~~ 259 (362)
+.+++.+ ++..+++|+++|||||++ ++.++|++++++|+|||+++||+.+..+++.+. ...
T Consensus 156 v~~i~~~---------Vk~~~~iPV~vKLsPnvt--di~~iA~aa~~aGADgv~liNTi~~~~~iDid~~~~~p~i~~~~ 224 (413)
T PRK08318 156 VEMVTRW---------VKRGSRLPVIAKLTPNIT--DIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKS 224 (413)
T ss_pred HHHHHHH---------HHHHCCCCEEEEECCCCC--CHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCC
T ss_conf 9999999---------885068856998289975--28999999997699889998147865532022355302106777
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCC-CCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 32211356454246899999997408-97489996788999999999983999754527877069789999999999999
Q gi|254780434|r 260 QDGGLSGSPLFLKSTIALAKIRQRVG-PKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFL 338 (362)
Q Consensus 260 ~~GGlSG~~i~~~al~~i~~i~~~~~-~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l 338 (362)
.+|||||++++|+++++|+++++... +++||||+|||+||+||+|||+|||++||||||++++||.++.+|++||++||
T Consensus 225 ~~GGlSG~aikPiALr~V~~i~~~~~~~~ipIiG~GGI~s~~Da~e~ilaGAsaVQv~Ta~~~~G~~ii~~i~~gL~~~m 304 (413)
T PRK08318 225 SHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYM 304 (413)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHHCCCHHHHHHHHHHHHHH
T ss_conf 76766645676999999999986346788377975685989999999982789216751014338448999999999999
Q ss_pred HHCCCCCHHHHHCCCCHHH
Q ss_conf 9838997789616975266
Q gi|254780434|r 339 NKENEVNFENIRGSYTEYW 357 (362)
Q Consensus 339 ~~~G~~si~e~iG~~~~~~ 357 (362)
++|||+||+|++|.++++.
T Consensus 305 ~~~G~~si~d~~G~a~~~~ 323 (413)
T PRK08318 305 DEKGFASLEDMVGLAVPNV 323 (413)
T ss_pred HHCCCCCHHHHHCCCCCCC
T ss_conf 9809974888725265776
No 12
>pfam01180 DHO_dh Dihydroorotate dehydrogenase.
Probab=100.00 E-value=0 Score=503.61 Aligned_cols=277 Identities=38% Similarity=0.616 Sum_probs=231.8
Q ss_pred CEEEECCEECCCCEEECCCCCCCHHHH-HHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHH
Q ss_conf 116888733599748534688867798-8874036752410200136878998862688425554100002477777889
Q gi|254780434|r 45 LNTKVAGISLSNPLGMAAGYDKNAEVP-IELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTV 123 (362)
Q Consensus 45 L~~~~~Gl~~~nPiglAaG~dk~~~~~-~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~ 123 (362)
|+|+|+|++|+|||++|||+|++++.+ +.+...||||+|+||||++||.|||+||++|++ ++++|++||+|+|+|++
T Consensus 2 L~t~~~Gl~~~nPi~lAsG~~~~~~~~~~~~~~~g~G~vv~ktit~~~~~gnp~Pr~~~~~--~~~~n~~G~~n~g~~~~ 79 (290)
T pfam01180 2 LAVKIPGLKFKNPIGLASGFDKFGEEALKWLALGKFGAIEIKSVTPEPQPGNPTPRVFRLP--EGVLNAMGLNNPGLDAV 79 (290)
T ss_pred EEEEECCEECCCCCEECCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEECC--CHHHHHCCCCCCHHHHH
T ss_conf 5699899887998788867688869999998718967799483485626699987799837--01442156577307999
Q ss_pred HHHHHHHH----HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99876410----00121000110454246788776555420675526983033365322110000234321111224445
Q gi|254780434|r 124 FSRLSKIQ----PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTR 199 (362)
Q Consensus 124 ~~~l~~~~----~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~ 199 (362)
++++.+.+ .+.|+++|+++. ..+||.+++++++++|||+|||+|||||++++.+++...+...+....
T Consensus 80 ~~~~~~~~~~~~~~~~vi~si~g~-----~~~d~~~~~~~~~~~ad~iElNiScPn~~~~~~~~~~~~~~~~i~~~v--- 151 (290)
T pfam01180 80 LEELLKRRKEYPRPLGIILSKAGS-----TVEDYVEVARKIGPFADYLELNVSCPNTPGLRALQTDPELAAILLKVV--- 151 (290)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCC-----CHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHCCCHHHHHHHHHHH---
T ss_conf 999998777538885378624669-----999999999999743588999985368876133404298999999998---
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH---HCCCCEEEEECCCCCCCCCCC----CCCCCCCCCCCCCCCCHH
Q ss_conf 5655312688517865057777488899999876---449829998066555323457----754463221135645424
Q gi|254780434|r 200 EEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVL---SHKVEGIIVSNTTLSRKGVQC----SDNHEQDGGLSGSPLFLK 272 (362)
Q Consensus 200 ~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~---~~g~dGiv~~NT~~~~~~~~~----~~~~~~~GGlSG~~i~~~ 272 (362)
+...++||++|||||.++. ..++.+++ +.|++|++++||+..++..+. +....++||+||++++|+
T Consensus 152 -----~~~~~~Pv~vKlsp~~~~~--~~~~~a~~~~~a~gv~gi~~~nt~~~~~~~d~~~~~~~~~~~~GGlSG~~i~~~ 224 (290)
T pfam01180 152 -----KEVSKVPVLVKLAPDLTDI--VIIDIADVAAGEDGLTGINATNTTVRGMRIDLKTESPILANGTGGLSGPAIKPI 224 (290)
T ss_pred -----HHCCCCCEEEEECCCCCCH--HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf -----7504787389838987746--899999997183776899965873465555555666312567888576067899
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 689999999740897489996788999999999983999754527877069789999999999999
Q gi|254780434|r 273 STIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFL 338 (362)
Q Consensus 273 al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l 338 (362)
++++|+++++++++++||||+|||+|++||+|||+||||+||+||+++|+||.++++|++||++||
T Consensus 225 al~~v~~~~~~~~~~ipIig~GGI~~~~da~e~i~aGA~~VQv~Tal~~~Gp~~i~~i~~~L~~~m 290 (290)
T pfam01180 225 ALKVIRELYQRVGPEIPIIGVGGIFTGEDALEKILAGASAVQIGTALIFGGPFIFPKIIDELPELL 290 (290)
T ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 999999999970899749998894999999999983997999858998419179999999999759
No 13
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=100.00 E-value=0 Score=501.55 Aligned_cols=273 Identities=33% Similarity=0.501 Sum_probs=239.8
Q ss_pred EEECCEECCCCEEECCCCC-CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEE-------CCCCCEEECCCCCC
Q ss_conf 6888733599748534688-867798887403675241020013687899886268842-------55541000024777
Q gi|254780434|r 47 TKVAGISLSNPLGMAAGYD-KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLT-------KDRAIINKLGFNNA 118 (362)
Q Consensus 47 ~~~~Gl~~~nPiglAaG~d-k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~-------~~~~iiN~~Gl~N~ 118 (362)
|+|+|++|+||||+|||++ ++++.++.+.++||||+|+||||++||+|||+||+||++ ++.+++|++||+|+
T Consensus 1 V~~~Gl~l~nPi~~aAG~~~~~~~~~~~~~~~G~G~vv~ktit~~~~~gn~~Pr~~~~~~~~~~~~~~~~~~N~~g~~n~ 80 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLLKTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNL 80 (289)
T ss_pred CEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCC
T ss_conf 96699828998888977888998999999976987899273572201589875188703666567551036215546787
Q ss_pred CHHHHHHHHHHHH---HCCCCCCEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCC-CCHHHHHHHHH
Q ss_conf 7788999876410---0012100011045424678877655542067-55269830333653221100-00234321111
Q gi|254780434|r 119 GYHTVFSRLSKIQ---PTSPIGINLGANKDSKDFILDYVSGIRLFFT-IASYFTINISSPNTPGLRSL-QKKKNLERLLI 193 (362)
Q Consensus 119 G~~~~~~~l~~~~---~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~-~aD~iEiNiSCPNt~g~~~~-~~~~~l~~~l~ 193 (362)
|.+.+++++++.+ ++.|+++||+++ +. +||.++++.+.+ .||++|+|+|||||++++.+ ++++.+.+++.
T Consensus 81 g~~~~~~~l~~~~~~~~~~pli~Si~~~--~~---~~~~~~a~~~~~~gad~lElNiScPn~~~~~~~~~~~~~~~~i~~ 155 (289)
T cd02810 81 GLDVWLQDIAKAKKEFPGQPLIASVGGS--SK---EDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLK 155 (289)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCC--CH---HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 8899999999998617995399978889--87---899999999998479848998403675655320149999999999
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC---CCCCCCCCCCCCCCCCC
Q ss_conf 224445565531268851786505777748889999987644982999806655532345---77544632211356454
Q gi|254780434|r 194 HVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQ---CSDNHEQDGGLSGSPLF 270 (362)
Q Consensus 194 ~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~---~~~~~~~~GGlSG~~i~ 270 (362)
+++.. .++||++|||||.+..++.++++++.++|+||++++||+..+.... ........||+||++++
T Consensus 156 ~v~~~---------~~~Pv~vKLsp~~~~~~~~~ia~~~~~~ga~gv~~~Nt~~~~~~~~~~~~~~~~~~~gGlSG~~i~ 226 (289)
T cd02810 156 AVKAA---------VDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIR 226 (289)
T ss_pred HHHHC---------CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 99860---------268748842788761689999999997599689996787765554444554456776523662778
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHH
Q ss_conf 246899999997408974899967889999999999839997545278770697899999999
Q gi|254780434|r 271 LKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQG 333 (362)
Q Consensus 271 ~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~ 333 (362)
|+++++|+++|+.++.++||||+|||+|++||+|||+||||+||+||+++|+||.++++|++|
T Consensus 227 ~~al~~v~~~~~~~~~~i~Iig~GGI~~~~da~e~i~aGA~~Vqv~Tal~~~Gp~ii~~i~~E 289 (289)
T cd02810 227 PLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRKIKKE 289 (289)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHCC
T ss_conf 899999999999749996099989939999999999849979999899997586999998639
No 14
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=100.00 E-value=0 Score=497.23 Aligned_cols=274 Identities=23% Similarity=0.353 Sum_probs=228.0
Q ss_pred CCEEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCC-CCCCCCCCCCEEEEECCCCCEEECCCCC----
Q ss_conf 31168887335997485346-88867798887403675241020013-6878998862688425554100002477----
Q gi|254780434|r 44 RLNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTP-HPQAGNPRPRVFRLTKDRAIINKLGFNN---- 117 (362)
Q Consensus 44 ~L~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~-~p~~GNp~PR~~r~~~~~~iiN~~Gl~N---- 117 (362)
||+|+++|++|+||||+||| ++++++.++.+.++||||+|+||||+ +||.|||+||+||++.+. .|++||+|
T Consensus 1 dL~t~~~Gl~~~nPi~lAAG~~~~~~~~~~~~~~~G~G~vv~ktit~~~~~~gn~~PR~~r~~~~~--~~~~g~~n~~~~ 78 (299)
T cd02940 1 DLSVTFCGIKFPNPFGLASAPPTTSYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSG--RGQIGFNNIELI 78 (299)
T ss_pred CCCEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCCEEECCEECCCCCCCCCCCCCEEECCCCH--HHHCCCCCCHHH
T ss_conf 998788999889986878778998999999999879888991568988788899998789887662--552133784012
Q ss_pred --CCHHHHHHHHHHHHH---CCCCCCEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCC-----CCHH
Q ss_conf --777889998764100---012100011045424678877655542067-55269830333653221100-----0023
Q gi|254780434|r 118 --AGYHTVFSRLSKIQP---TSPIGINLGANKDSKDFILDYVSGIRLFFT-IASYFTINISSPNTPGLRSL-----QKKK 186 (362)
Q Consensus 118 --~G~~~~~~~l~~~~~---~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~-~aD~iEiNiSCPNt~g~~~~-----~~~~ 186 (362)
.+.+++++++++.+. +.|+++||.+.. + .+||.++++.+.+ +|||+|||+|||||++++.+ ++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~si~~~~-~---~~~~~~~a~~~~~~gad~lElNiScPN~~~~~~~g~~~~~~~~ 154 (299)
T cd02940 79 SEKPLEYWLKEIRELKKDFPDKILIASIMCEY-N---KEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPE 154 (299)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC-C---HHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHH
T ss_conf 12029999999999875279973798851789-8---7899999999987188889982678898761234555244999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC--------CC
Q ss_conf 4321111224445565531268851786505777748889999987644982999806655532345775--------44
Q gi|254780434|r 187 NLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSD--------NH 258 (362)
Q Consensus 187 ~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~--------~~ 258 (362)
.+.+++.+++ ...++|+++|||||++ ++.+++++++++|+||++++||+..+.++..+. ..
T Consensus 155 ~l~~i~~~v~---------~~~~~Pi~vKLsP~~~--~i~~ia~~~~~~gadgiv~~Nt~~~~~~i~~d~~~~~~~~~~~ 223 (299)
T cd02940 155 LVEEICRWVR---------EAVKIPVIAKLTPNIT--DIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGK 223 (299)
T ss_pred HHHHHHHHHH---------HHCCCCEEEECCCCHH--HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999998---------6247864896288715--4999999999859989999766677565442235666564567
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 6322113564542468999999974089748999678899999999998399975452787706978999999999
Q gi|254780434|r 259 EQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 259 ~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
...||+||++++|+++++|+++|+.+++++||||||||+|++||+|||+||||+||+||+++|+||+++++|++||
T Consensus 224 ~~~GGlSG~~l~~~al~~v~~i~~~~~~~i~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~Gp~~i~~I~~gL 299 (299)
T cd02940 224 TTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDDMCTGL 299 (299)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCC
T ss_conf 7778455878899999999999996489977899899599999999998499899998999980989999997219
No 15
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=100.00 E-value=0 Score=482.43 Aligned_cols=295 Identities=20% Similarity=0.254 Sum_probs=240.7
Q ss_pred CCEEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCC------CCCCCCCCCEEEEECCCCCEEECCCC
Q ss_conf 31168887335997485346-888677988874036752410200136------87899886268842555410000247
Q gi|254780434|r 44 RLNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPH------PQAGNPRPRVFRLTKDRAIINKLGFN 116 (362)
Q Consensus 44 ~L~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~------p~~GNp~PR~~r~~~~~~iiN~~Gl~ 116 (362)
||+|+++|++|+|||++||| ++++++.++.+.+.|||++|+||++.+ ++.+++.++-.+.++..+++|++||+
T Consensus 1 DLst~~~Gl~l~NPi~~ASg~~~~~~e~~~~~~~~G~Gavv~KSi~~e~i~~~~~~~~~~~~~~~~~~~~~~~~n~~g~~ 80 (325)
T cd04739 1 DLSTTYLGLSLKNPLVASASPLSRNLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRY 80 (325)
T ss_pred CCCEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
T ss_conf 98579899967998885652568999999999985967999795674234567788898888998871121403321455
Q ss_pred CCCHHHHHHHHHHHHH--CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC-CCCCHHHHHHHHH
Q ss_conf 7777889998764100--012100011045424678877655542067552698303336532211-0000234321111
Q gi|254780434|r 117 NAGYHTVFSRLSKIQP--TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLR-SLQKKKNLERLLI 193 (362)
Q Consensus 117 N~G~~~~~~~l~~~~~--~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~-~~~~~~~l~~~l~ 193 (362)
|+|+|.+++++++.+. +.|+++||++. +.++|.||++.++.+. +|++|||+||||+.... ..+..+.+.+++.
T Consensus 81 n~g~e~~l~~i~~~~~~~~~pvI~Si~g~--s~ee~~~~a~~~~~~g--ad~lElNls~~~~~~~~~~~~~~~~~~~iv~ 156 (325)
T cd04739 81 NLGPEEYLELIRRAKRAVSIPVIASLNGV--SAGGWVDYARQIEEAG--ADALELNIYALPTDPDISGAEVEQRYLDILR 156 (325)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCC--CHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 75899999999998753598759871689--9899999999997649--9879996566788855442106889999999
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCHH
Q ss_conf 22444556553126885178650577774888999998764498299980665553234577544-63221135645424
Q gi|254780434|r 194 HVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNH-EQDGGLSGSPLFLK 272 (362)
Q Consensus 194 ~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~-~~~GGlSG~~i~~~ 272 (362)
++ +...++|||||||||.+ ++.+++++++++|+||++++||+..++ ++..... ....++||++++++
T Consensus 157 ~V---------k~~~~~Pv~vKLsP~~~--di~~ia~aa~~~GAdgi~liNT~~~~~-id~~~~~~~~~~~lSg~~~~~~ 224 (325)
T cd04739 157 AV---------KSAVTIPVAVKLSPFFS--ALAHMAKQLDAAGADGLVLFNRFYQPD-IDLETLEVVPNLLLSSPAEIRL 224 (325)
T ss_pred HH---------HHCCCCCEEEECCCCCC--HHHHHHHHHHHCCCCEEEEECCCCCCC-CCCCCCEEECCCCCCCCCCCHH
T ss_conf 99---------86078866995399830--099999999975998899735766564-2167641536877457530068
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf 68999999974089748999678899999999998399975452787706978999999999999998389977896169
Q gi|254780434|r 273 STIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGS 352 (362)
Q Consensus 273 al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~ 352 (362)
++++|+++++.+ ++||||+|||+||+||+|||+||||+||||||++++||.++++|++||.+||++|||+||+|+||+
T Consensus 225 alr~v~~~~~~~--~ipIiG~GGI~s~~Da~e~ilAGAsaVQv~TA~~~~G~~i~~~i~~eL~~~m~~~G~~si~e~~Gk 302 (325)
T cd04739 225 PLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred HHHHHHHHHCCC--CCCEEEECCCCCHHHHHHHHHCCCCHHHEEHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHCCC
T ss_conf 899999996468--989888889598999999998098876143234641837999999999999998399979996273
Q ss_pred CCHH
Q ss_conf 7526
Q gi|254780434|r 353 YTEY 356 (362)
Q Consensus 353 ~~~~ 356 (362)
-.++
T Consensus 303 l~~~ 306 (325)
T cd04739 303 MSQK 306 (325)
T ss_pred CCCC
T ss_conf 4545
No 16
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=100.00 E-value=0 Score=471.73 Aligned_cols=292 Identities=20% Similarity=0.269 Sum_probs=237.9
Q ss_pred CCEEEECCEECCCCEEECCC-CCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCE--------EEEECCCCCEEECC
Q ss_conf 31168887335997485346-8886779888740367524102001368789988626--------88425554100002
Q gi|254780434|r 44 RLNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRV--------FRLTKDRAIINKLG 114 (362)
Q Consensus 44 ~L~~~~~Gl~~~nPiglAaG-~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~--------~r~~~~~~iiN~~G 114 (362)
||+|+|+|++|+|||++||| ++++++.++.+.+.||||+|+||++.+ +..|+.++. ++.++..+++|++|
T Consensus 2 DLst~~~Gl~lkNPii~aSg~~~~~~~~~~~~~~~G~GavV~Ksi~~e-~i~~~~~~~~~~~~~~~~~~~~~~g~~n~~g 80 (333)
T PRK07565 2 DLSTTYLGLSLRNPLVASASPLTESLDNVKRLEDAGAGAVVLKSLFEE-QIRHEAAELARHLTQGTESYAEALDYFPEPA 80 (333)
T ss_pred CCCEEECCEECCCCCEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 663888999669988866605799999999999859619996877610-1457777778888889867533345314234
Q ss_pred CCCCCHHHHHHHHHHHHH--CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC-CCCCCCHHHHHHH
Q ss_conf 477777889998764100--0121000110454246788776555420675526983033365322-1100002343211
Q gi|254780434|r 115 FNNAGYHTVFSRLSKIQP--TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPG-LRSLQKKKNLERL 191 (362)
Q Consensus 115 l~N~G~~~~~~~l~~~~~--~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g-~~~~~~~~~l~~~ 191 (362)
++|+|+|++++.+++.+. +.|+|+||++. +.++|.||++.++.+ ++|++|||+||||+.. .+..+.++.+.++
T Consensus 81 ~~n~g~e~~l~~i~~~k~~~~~pvIaSi~g~--s~ee~~~~a~~~e~~--gadaiElNis~~~~~~~~~~~~~~~~~~~i 156 (333)
T PRK07565 81 YFRGGPEEYLELIRRAKEAVDIPVIASLNGS--SAGGWVDYARQIEEA--GADALELNIYYLPTDPDISGAEVEQRYLDI 156 (333)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEECCCC--CHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf 5686899999999987750598459874779--989999999999764--998899976677988654446507889999
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 112244455655312688517865057777488899999876449829998066555323457754463-2211356454
Q gi|254780434|r 192 LIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQ-DGGLSGSPLF 270 (362)
Q Consensus 192 l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~-~GGlSG~~i~ 270 (362)
+.++ +..+++||+||||||.+ ++.+++++++++|+||++++||.... .++....... .+++||++++
T Consensus 157 v~~V---------~~~~~~Pv~vKLsPn~t--di~~iA~aa~~~Gadgv~~iNT~~~~-~Id~e~~~~~~~~~lSgp~~~ 224 (333)
T PRK07565 157 LRAV---------KSAVSIPVAVKLSPYFS--NLANMAKRLDAAGADGLVLFNRFYQP-DIDLETLEVVPGLVLSTPAEL 224 (333)
T ss_pred HHHH---------HHHCCCCEEEECCCCCC--HHHHHHHHHHHCCCCEEEEECCCCCC-CCCCCCCEEECCCCCCCCCCC
T ss_conf 9999---------86468856873599821--09999999997499889984366656-331554437368666774312
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 24689999999740897489996788999999999983999754527877069789999999999999983899778961
Q gi|254780434|r 271 LKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIR 350 (362)
Q Consensus 271 ~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~i 350 (362)
|+++++|+++++.+ ++||||+|||+||+||+|||+||||+|||||+++++||+++++|++||++||++|||+||+|+|
T Consensus 225 ~~alr~v~~v~~~~--~ipIiG~GGI~sg~DaiE~ilAGAsaVQv~Ta~~~~G~~v~~~i~~eL~~~m~~~G~~si~e~~ 302 (333)
T PRK07565 225 RLPLRWIAILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTILAGLEDWMERHGYESLSQFR 302 (333)
T ss_pred CHHHHHHHHHHCCC--CCCEEEECCCCCHHHHHHHHHCCCCHHEEEHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHC
T ss_conf 07889999996046--9898888895989999999980988633622366537279999999999999983999899961
Q ss_pred CCCC
Q ss_conf 6975
Q gi|254780434|r 351 GSYT 354 (362)
Q Consensus 351 G~~~ 354 (362)
|+-.
T Consensus 303 G~l~ 306 (333)
T PRK07565 303 GSMS 306 (333)
T ss_pred CCCC
T ss_conf 7236
No 17
>KOG1799 consensus
Probab=100.00 E-value=1.4e-45 Score=327.27 Aligned_cols=315 Identities=18% Similarity=0.206 Sum_probs=248.5
Q ss_pred HHHCCCCCCCCCCEEEECCEECCCCEEECCCC-CCCHHHHHHHHHCCCCEEECCCCCCCCC-CCCCCCCEEEEECCCCC-
Q ss_conf 11104678896311688873359974853468-8867798887403675241020013687-89988626884255541-
Q gi|254780434|r 33 LLSFFPVHSDPRLNTKVAGISLSNPLGMAAGY-DKNAEVPIELLKLGFGFVEIGTVTPHPQ-AGNPRPRVFRLTKDRAI- 109 (362)
Q Consensus 33 ~~~~~~~~~~~~L~~~~~Gl~~~nPiglAaG~-dk~~~~~~~l~~~G~G~v~~ktit~~p~-~GNp~PR~~r~~~~~~i- 109 (362)
++.++.+-++.+..++.+|++|+||+++++++ .++++++++.++-||||++.||..+... .-|..||+.|.+-.+..
T Consensus 91 ~~k~~~~l~~ie~~vd~~G~k~~npf~~~s~Pp~t~~~lm~raf~~gwg~l~~kt~~ld~~kV~nv~prvar~~t~~~~~ 170 (471)
T KOG1799 91 GLKALLYLKSIEELVDWDGQKPANPFHQKSKPPPTIAELMDRAFPSGWGYLEQKTKILDENKVRNVEPRVARSPTKRSCF 170 (471)
T ss_pred CHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHEEEEECCHHHHEECCCCEEECCCCCCCC
T ss_conf 12342101014452003576579854347899996278898531035651110102213254220466336446788764
Q ss_pred -EEECCCCCC------CHHHHHHHHHHH---HHCCCCCCEEECCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCCCCCCC
Q ss_conf -000024777------778899987641---000121000110454246788776555420-675526983033365322
Q gi|254780434|r 110 -INKLGFNNA------GYHTVFSRLSKI---QPTSPIGINLGANKDSKDFILDYVSGIRLF-FTIASYFTINISSPNTPG 178 (362)
Q Consensus 110 -iN~~Gl~N~------G~~~~~~~l~~~---~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~-~~~aD~iEiNiSCPNt~g 178 (362)
-|+--+.|. -.++++..+.++ .+...+|.|+++-.+ -.+|.++.... ..++|.+|+|+||||..+
T Consensus 171 ~p~~~i~~nielIsdr~~e~~L~~f~eLk~~~p~~imIas~Mciyn----k~~w~el~d~~eqag~d~lE~nlscphgm~ 246 (471)
T KOG1799 171 IPKRPIPTNIELISDRKAEQYLGTFGELKNVEPVVIMIASEMCIYN----KKCWMELNDSGEQAGQDDLETNLSCPHGMC 246 (471)
T ss_pred CCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHH----HHHHHHHHHHHHHHCCCCHHCCCCCCCCCC
T ss_conf 6688765024564452399999999975014883463467898852----136899865677634430320588988876
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC----
Q ss_conf 1100002343211112244455655312688517865057777488899999876449829998066555323457----
Q gi|254780434|r 179 LRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQC---- 254 (362)
Q Consensus 179 ~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~---- 254 (362)
.|.+.-.-+....+....+.|.+ ....+|+|.|++||+++ +.++++.+...|+.||+++||+.+..++..
T Consensus 247 ergmgla~gq~p~v~~EvC~Wi~----A~~~Ip~~~kmTPNitd--~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~ 320 (471)
T KOG1799 247 ERGMGLALGQCPIVDCEVCGWIN----AKATIPMVSKMTPNITD--KREVARSVNPVGCEGIAAINTIMSVMGIDMKTLR 320 (471)
T ss_pred CCCCCCEECCCHHHHHHHHHHHH----HCCCCCCCCCCCCCCCC--CCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 56641011568056677764544----21102100356898664--5432110376653203557688887544413368
Q ss_pred ----CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHH
Q ss_conf ----7544632211356454246899999997408974899967889999999999839997545278770697899999
Q gi|254780434|r 255 ----SDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRI 330 (362)
Q Consensus 255 ----~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I 330 (362)
....+.+||+||++++|+++..|.-+.+... .++|.|.|||.+++|+.+||++||+.|||||+++.+|++++++.
T Consensus 321 P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~-~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~~~~~~V~~~ 399 (471)
T KOG1799 321 PEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK-EFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMMHGYGHVKTL 399 (471)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 77664565578874642203588999999999862-58612335743231235576507737545167775486359989
Q ss_pred HHHHHHHHHHCCCCCHHHHHCCCCHHHH
Q ss_conf 9999999998389977896169752664
Q gi|254780434|r 331 IQGLSDFLNKENEVNFENIRGSYTEYWA 358 (362)
Q Consensus 331 ~~~L~~~l~~~G~~si~e~iG~~~~~~~ 358 (362)
+.||+++|.++||++|+|++|.++.|..
T Consensus 400 Ca~LK~~m~~~~~~ti~~~~G~SL~~~~ 427 (471)
T KOG1799 400 CAELKDFMKQHNFSTIEEFRGHSLQYFT 427 (471)
T ss_pred HHHHHHHHHHCCCHHHHHCCCCCHHHHH
T ss_conf 9889999987170045531670023100
No 18
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.77 E-value=2.1e-16 Score=130.37 Aligned_cols=228 Identities=18% Similarity=0.229 Sum_probs=150.6
Q ss_pred EECCEECCCCEEEC--CCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHH
Q ss_conf 88873359974853--4688867798887403675241020013687899886268842555410000247777788999
Q gi|254780434|r 48 KVAGISLSNPLGMA--AGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFS 125 (362)
Q Consensus 48 ~~~Gl~~~nPiglA--aG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~ 125 (362)
++.+++|+||+.+| +|.. |.-.-.-..+.|.+.+.+-=|+.+ +++ ..| +.-..
T Consensus 2 ~ig~~~~~~~l~lAPMagvt-d~~FR~l~~~~Ga~l~~TEmv~a~-----------------~~~----~~~---~~~~~ 56 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGIT-DRPFRTLCYEMGAGLTVSEMMSSN-----------------PQV----WES---DKSRL 56 (321)
T ss_pred CCCCEECCCCEEECCCCCCC-CHHHHHHHHHHCCCEEEECCEEEC-----------------HHH----HCC---HHHHH
T ss_conf 37988448988973578994-899999999988399998758712-----------------777----338---48898
Q ss_pred HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHH-HCCCCCEEEEECCCC------CCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8764100012100011045424678877655542-067552698303336------532211000023432111122444
Q gi|254780434|r 126 RLSKIQPTSPIGINLGANKDSKDFILDYVSGIRL-FFTIASYFTINISSP------NTPGLRSLQKKKNLERLLIHVMQT 198 (362)
Q Consensus 126 ~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~-~~~~aD~iEiNiSCP------Nt~g~~~~~~~~~l~~~l~~v~~~ 198 (362)
.+.......|++|.|.++. .+++.+.++. ...++|.+.||+.|| +..|-..+.+++.+.+++.+++..
T Consensus 57 ~~~~~~~~~~~~vQl~G~d-----p~~~a~Aa~~~~~~g~~~IDiN~GCP~~kV~k~g~GsaLl~~p~~~~~iv~a~~~a 131 (321)
T PRK10415 57 RMVHVDEPGIRTVQIAGSD-----PKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA 131 (321)
T ss_pred HHCCCCCCCCCEEEECCCC-----HHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCEEEHHCCHHHHHHHHHHHHHC
T ss_conf 6304678898059972699-----99999999988764999894318999899707983650633989999999999734
Q ss_pred HHHHHHHCCCCCEEEEEC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 556553126885178650--577774888999998764498299980665553234577544632211356454246899
Q gi|254780434|r 199 REEEKIKTGKFVPIFLKI--SPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIA 276 (362)
Q Consensus 199 ~~~~~~~~~~~~Pi~vKL--sPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~ 276 (362)
.++||-||+ ..|....+..++++.++++|++.|++-- |.. .-+++|++- -..
T Consensus 132 ---------~~iPVTvKiRlG~~~~~~~~~~~~~~~e~aG~~~itvHg----RT~---------~q~y~g~ad----w~~ 185 (321)
T PRK10415 132 ---------VDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHG----RTR---------ACLFNGEAE----YDS 185 (321)
T ss_pred ---------CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEH----HHH---------HHHHCCCCC----HHH
T ss_conf ---------487469998468885224399999999856988999972----213---------443169987----799
Q ss_pred HHHHHHHCCCCEEEEEECCCCCHHHHHHHHH-CCCCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 9999974089748999678899999999998-399975452787706978999999999
Q gi|254780434|r 277 LAKIRQRVGPKIAIIGTGGISSTKDALDKIM-AGANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 277 i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~-aGAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
|+.+++.+ ++|+||.|+|.|.+|+.+++. .|+|.|+++.+.+-+ |+++++|.+-|
T Consensus 186 i~~vk~~~--~iPvi~NGDI~~~~da~~~l~~tg~dgvMigRgal~n-PwiF~~i~~~l 241 (321)
T PRK10415 186 IRAVKQKV--SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGR-PWIFREIQHYL 241 (321)
T ss_pred HHHHHHCC--CCCEEECCCCCCHHHHHHHHHHHCCCEEEECHHHHCC-CHHHHHHHHHH
T ss_conf 99998547--9978965891999999999986299999975665369-87799999998
No 19
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.76 E-value=3.5e-16 Score=128.84 Aligned_cols=263 Identities=21% Similarity=0.306 Sum_probs=155.7
Q ss_pred CCCCCCCEEEECCEECCCCEEECC---CCCCC----HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEE
Q ss_conf 788963116888733599748534---68886----77988874036752410200136878998862688425554100
Q gi|254780434|r 39 VHSDPRLNTKVAGISLSNPLGMAA---GYDKN----AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIIN 111 (362)
Q Consensus 39 ~~~~~~L~~~~~Gl~~~nPiglAa---G~dk~----~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN 111 (362)
..++.|++|+++|.++..||+++| |-... ....+...+.|..+ .+||.+.
T Consensus 36 d~~~iDlst~~lG~~l~~P~~I~AMTGG~~~~~~iN~~LA~aA~~~gi~m-~vGSq~~---------------------- 92 (326)
T cd02811 36 DLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAM-GVGSQRA---------------------- 92 (326)
T ss_pred CHHHCCCCEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCE-EECCHHH----------------------
T ss_conf 86446265358973247875887555797556588999999999819977-8342288----------------------
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC----CCCCCCCCHHH
Q ss_conf 00247777788999876410001210001104542467887765554206755269830333653----22110000234
Q gi|254780434|r 112 KLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNT----PGLRSLQKKKN 187 (362)
Q Consensus 112 ~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt----~g~~~~~~~~~ 187 (362)
.+.++....-.+-.++..++.+++.||+.........++....++.+. ||++++.+.-+.- +|.+.+.
T Consensus 93 --al~~~~~~~sf~vvR~~~p~~~l~aNiga~~l~~~~~~~~~~ai~~l~--AdaL~iHlN~~QE~~~peGDr~f~---- 164 (326)
T cd02811 93 --ALEDPELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIE--ADALAIHLNPLQEAVQPEGDRDFR---- 164 (326)
T ss_pred --HHCCCCHHHHHHHHHHHCCCCEEEEECCCHHHCCCCHHHHHHHHHHCC--CCEEEEECCHHHHCCCCCCCCCHH----
T ss_conf --753921665678998758876278635803304568999999998557--885786446065400789898777----
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEE-----CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 3211112244455655312688517865-----05777748889999987644982999806655532345775446322
Q gi|254780434|r 188 LERLLIHVMQTREEEKIKTGKFVPIFLK-----ISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDG 262 (362)
Q Consensus 188 l~~~l~~v~~~~~~~~~~~~~~~Pi~vK-----LsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~G 262 (362)
..++.+ ...+....+||+|| |++ +-+..+.+.|+++|.++|.=+- .-...+..+...+
T Consensus 165 --~~~~~I------~~l~~~~~vPVIvKeVG~Gis~--------eda~~l~~~Gv~~IdVSghGGT-nf~~IE~~R~~d~ 227 (326)
T cd02811 165 --GWLERI------EELVKALSVPVIVKEVGFGISR--------ETAKRLADAGVKAIDVAGAGGT-SWARVENYRAKDS 227 (326)
T ss_pred --HHHHHH------HHHHHHCCCCEEEEECCCCCCH--------HHHHHHHHCCCCEEEECCCCCC-CHHHHHHHCCCCC
T ss_conf --899999------9999847998588524789999--------9999999679999997899997-5366531015673
Q ss_pred CC-CCCCCCH---HHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC---CCH----HHHHHHH
Q ss_conf 11-3564542---46899999997408974899967889999999999839997545278770---697----8999999
Q gi|254780434|r 263 GL-SGSPLFL---KSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY---EGI----SLPKRII 331 (362)
Q Consensus 263 Gl-SG~~i~~---~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~---~Gp----~~~~~I~ 331 (362)
.. +...+.. .+...+.+++.. .++++||+.|||.++.|+++-+..||++|.++..+++ +|. ..+..+.
T Consensus 228 ~~~~~~~l~dwGi~T~~sL~e~~~~-~~~~~iiasGGir~g~Dv~KalaLGA~~vgiar~~L~~~~~G~~~v~~~l~~~~ 306 (326)
T cd02811 228 DQRLAEYFADWGIPTAASLLEVRSA-LPDLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALEGEEAVIETIEQII 306 (326)
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 1337889886285569999999973-899819986887877999999995553365279999998548999999999999
Q ss_pred HHHHHHHHHCCCCCHHHHH
Q ss_conf 9999999983899778961
Q gi|254780434|r 332 QGLSDFLNKENEVNFENIR 350 (362)
Q Consensus 332 ~~L~~~l~~~G~~si~e~i 350 (362)
+||+..|---|.+|++|++
T Consensus 307 ~el~~~M~l~G~~~i~eLr 325 (326)
T cd02811 307 EELRTAMFLTGAKNLAELK 325 (326)
T ss_pred HHHHHHHHHHCCCCHHHHC
T ss_conf 9999999986899889974
No 20
>pfam01070 FMN_dh FMN-dependent dehydrogenase.
Probab=99.75 E-value=5.9e-15 Score=120.63 Aligned_cols=259 Identities=24% Similarity=0.288 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHH-HHHHHCC-CCCCCCCCEEEECCEECCCCEEECC----C-CCCCHH--HHHHHHHCCCCEEECCCCC
Q ss_conf 6788999999996-2011104-6788963116888733599748534----6-888677--9888740367524102001
Q gi|254780434|r 18 PEIAHHLSIVALK-SGLLSFF-PVHSDPRLNTKVAGISLSNPLGMAA----G-YDKNAE--VPIELLKLGFGFVEIGTVT 88 (362)
Q Consensus 18 pe~ah~~~~~~~~-~~~~~~~-~~~~~~~L~~~~~Gl~~~nPiglAa----G-~dk~~~--~~~~l~~~G~G~v~~ktit 88 (362)
-|.+++-...++. ..+.|+. ...+++|++|+++|.+++.||++|+ + ...++| ..+...+.|..+.+- |.+
T Consensus 18 ~e~t~~~N~~af~~~~l~pr~L~dv~~~d~st~~lG~~~~~Pi~iap~g~~~l~~~~ge~~lAraA~~~gi~~~ls-s~~ 96 (301)
T pfam01070 18 DEITLRRNRAAFDRIRLRPRVLRDVSDRDTSTTLLGQRLSLPFGIAPTGMQGLAHPDGELALARAAAAAGIPFVLS-TVA 96 (301)
T ss_pred CCHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEECCCCCCCCEEECCCCHHHHCCCCHHHHHHHHHHHHCCCEECC-CCC
T ss_conf 5299999999998370676445788778884357883167876787401022137645899999999835870046-876
Q ss_pred CCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 36878998862688425554100002477777889998764100012100011045424678877655542067552698
Q gi|254780434|r 89 PHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFT 168 (362)
Q Consensus 89 ~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iE 168 (362)
+..+|.+. +.. ..+.+..+-..+ ..+...+..+-++.. +++++.
T Consensus 97 ----------------------------~~~~e~i~----~~~-~~~~~fQly~~~-d~~~~~~~i~ra~~a--g~~al~ 140 (301)
T pfam01070 97 ----------------------------STSLEEVA----AAA-GGPLWFQLYVPK-DRELTEDLLERAEAA--GYKALV 140 (301)
T ss_pred ----------------------------CCCHHHHH----HHC-CCCEEEEEEECC-CHHHHHHHHHHHHHC--CCCEEE
T ss_conf ----------------------------55527889----857-997689987458-889999999999974--999799
Q ss_pred EECCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--CCCCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 303336532211--00002343211112244455655312688517865--05777748889999987644982999806
Q gi|254780434|r 169 INISSPNTPGLR--SLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK--ISPDLSEEELDDIAVEVLSHKVEGIIVSN 244 (362)
Q Consensus 169 iNiSCPNt~g~~--~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK--LsPd~~~~~i~~ia~~a~~~g~dGiv~~N 244 (362)
+.+-.|-. +.| +....+ .+ ...+...+.|+++| ++ .+=+..+.++|+|||+++|
T Consensus 141 ltvD~~~~-g~r~~d~r~~~----~i---------~~l~~~~~~PvivKGI~s--------~eDA~~a~~~Gv~~I~VSn 198 (301)
T pfam01070 141 LTVDTPVL-GNRERDLRNGD----DL---------AWLRDQWKGPLVLKGILS--------PEDAKRAVEAGVDGIVVSN 198 (301)
T ss_pred EECCCCCC-CCCCCCCCCHH----HH---------HHHHHHCCCCEEEECCCC--------HHHHHHHHHCCCCEEEECC
T ss_conf 97268765-77853204399----99---------999986699889982899--------9999999985999999649
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC--
Q ss_conf 655532345775446322113564542468999999974089748999678899999999998399975452787706--
Q gi|254780434|r 245 TTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYE-- 322 (362)
Q Consensus 245 T~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~-- 322 (362)
-= . +..-+ -+.+.+.+.++++.++++++||..|||.+|.|+++.+..||++|.++..++|-
T Consensus 199 HG-G---------RqlD~-------~~~t~~~L~eI~~~v~~~~~i~~DGGIR~G~DV~KAlALGA~~V~iGRp~l~ala 261 (301)
T pfam01070 199 HG-G---------RQLDG-------APATIDALPEIVAAVGGRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFLYGLA 261 (301)
T ss_pred CC-C---------CCCCC-------CCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEECHHHHHHHH
T ss_conf 98-5---------44688-------8679999999999856774899638747626899999808986655689999999
Q ss_pred --CH----HHHHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf --97----8999999999999998389977896169
Q gi|254780434|r 323 --GI----SLPKRIIQGLSDFLNKENEVNFENIRGS 352 (362)
Q Consensus 323 --Gp----~~~~~I~~~L~~~l~~~G~~si~e~iG~ 352 (362)
|. .+++.+.+||..-|..-|.+||+|+.-.
T Consensus 262 ~~G~~Gv~~~l~~l~~El~~~M~l~G~~~i~~l~~~ 297 (301)
T pfam01070 262 AGGEAGVAHALEILRDELERTMALLGCTSIADLTPS 297 (301)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHH
T ss_conf 657999999999999999999998589997895998
No 21
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.75 E-value=5.2e-15 Score=120.95 Aligned_cols=256 Identities=19% Similarity=0.275 Sum_probs=161.5
Q ss_pred CHHHHHHHHHHHHH-HHHHHC-CCCCCCCCCEEEECCEECCCCEEECC----C-CCCCHHH--HHHHHHCCCCEEECCCC
Q ss_conf 96788999999996-201110-46788963116888733599748534----6-8886779--88874036752410200
Q gi|254780434|r 17 DPEIAHHLSIVALK-SGLLSF-FPVHSDPRLNTKVAGISLSNPLGMAA----G-YDKNAEV--PIELLKLGFGFVEIGTV 87 (362)
Q Consensus 17 ~pe~ah~~~~~~~~-~~~~~~-~~~~~~~~L~~~~~Gl~~~nPiglAa----G-~dk~~~~--~~~l~~~G~G~v~~kti 87 (362)
+.|.+++-...++. ..+.++ +...+++|++|+++|.+|+.||++|. + +..++|. .+.....|..++.--
T Consensus 24 ~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~l~~p~GE~~~AraA~~~gi~~~lSt-- 101 (299)
T cd02809 24 GDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLST-- 101 (299)
T ss_pred CCCHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEECCCCCCCCEEECCHHHHCCCCCCHHHHHHHHHHHHCCCEECCC--
T ss_conf 744999999999983647740134887788766678976889768885220125678726999999997056431137--
Q ss_pred CCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 13687899886268842555410000247777788999876410001210001104542467887765554206755269
Q gi|254780434|r 88 TPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYF 167 (362)
Q Consensus 88 t~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~i 167 (362)
+ .|..+|.+.+.. + .+.+-.+-... ..+..++..+-+++. ++.++
T Consensus 102 -------------------------~--ss~slEei~~~~----~-~~~wfQLY~~~-d~~~~~~li~rA~~a--G~~al 146 (299)
T cd02809 102 -------------------------V--STTSLEEVAAAA----P-GPRWFQLYVPR-DREITEDLLRRAEAA--GYKAL 146 (299)
T ss_pred -------------------------C--CCCCHHHHHHHC----C-CCEEEEEECCC-CHHHHHHHHHHHHHC--CCCEE
T ss_conf -------------------------6--656689999744----8-98467764369-999999999999985--99989
Q ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--CCCCCCHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 830333653221100002343211112244455655312688517865--057777488899999876449829998066
Q gi|254780434|r 168 TINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK--ISPDLSEEELDDIAVEVLSHKVEGIIVSNT 245 (362)
Q Consensus 168 EiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK--LsPd~~~~~i~~ia~~a~~~g~dGiv~~NT 245 (362)
.+.+=.|... .| ..+.+....+...+.|+++| ++| +=+..+.++|+|||+++|-
T Consensus 147 ~lTvD~p~~g-~R---------------~~w~~i~~l~~~~~~p~i~KGi~~~--------~DA~~a~~~G~dgI~VSNH 202 (299)
T cd02809 147 VLTVDTPVLG-RR---------------LTWDDLAWLRSQWKGPLILKGILTP--------EDALRAVDAGADGIVVSNH 202 (299)
T ss_pred EEECCCCCCC-CC---------------CCHHHHHHHHHHCCCCEEEECCCCH--------HHHHHHHHCCCCEEEECCC
T ss_conf 9970589878-87---------------9999999999866998799727889--------9999999859988997288
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC---
Q ss_conf 55532345775446322113564542468999999974089748999678899999999998399975452787706---
Q gi|254780434|r 246 TLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYE--- 322 (362)
Q Consensus 246 ~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~--- 322 (362)
= .+...+ .|-+++.+.++++.++++++|+--|||.+|.|+++.+..||++|.++..++|-
T Consensus 203 G----------GRqlD~-------~p~~i~~L~~i~~~v~~~~~v~~DgGvR~G~Dv~KAlaLGA~~V~iGRp~l~~l~~ 265 (299)
T cd02809 203 G----------GRQLDG-------APATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAA 265 (299)
T ss_pred C----------CCCCCC-------CCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHH
T ss_conf 7----------333688-------87789999999998546728997188475368999997699889877899999885
Q ss_pred -CH----HHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf -97----89999999999999983899778961
Q gi|254780434|r 323 -GI----SLPKRIIQGLSDFLNKENEVNFENIR 350 (362)
Q Consensus 323 -Gp----~~~~~I~~~L~~~l~~~G~~si~e~i 350 (362)
|. .+++.+.+||..-|..-|+++++|+-
T Consensus 266 ~G~~Gv~~~~~~l~~El~~~M~l~G~~~i~~l~ 298 (299)
T cd02809 266 GGEAGVAHVLEILRDELERAMALLGCASLADLD 298 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 449999999999999999999984899877779
No 22
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family; InterPro: IPR004652 This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) and includes NifR3 itself, from Rhodobacter capsulatus. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes , and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. ; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=99.73 E-value=2e-16 Score=130.47 Aligned_cols=234 Identities=21% Similarity=0.226 Sum_probs=162.6
Q ss_pred ECCEECCCCEEEC--CCC-CCCHHHHHHHHHCC-------CCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCC
Q ss_conf 8873359974853--468-88677988874036-------7524102001368789988626884255541000024777
Q gi|254780434|r 49 VAGISLSNPLGMA--AGY-DKNAEVPIELLKLG-------FGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNA 118 (362)
Q Consensus 49 ~~Gl~~~nPiglA--aG~-dk~~~~~~~l~~~G-------~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~ 118 (362)
+..+.|+|||.+| ||+ |---..+-.- .+ .|+++.-=|+.++ |+- .+
T Consensus 1 IG~~~L~s~V~~APmAGvtD~~FR~l~~~--~~~skvGtvagL~~~EMvs~~~-----------------~~~----~~- 56 (336)
T TIGR00737 1 IGNIQLKSRVVLAPMAGVTDLAFRRLVAE--YGQSKVGTVAGLTVSEMVSSEA-----------------IVY----KS- 56 (336)
T ss_pred CCCCCCCCCEEECCCCCCCCHHHHHHHHH--HCCCCCCCCCCCCEECCCCCHH-----------------HHH----HH-
T ss_conf 98722367656436778767178999998--5214433124100222004537-----------------886----23-
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC------CCCCCCCCCHHHHHHHH
Q ss_conf 778899987641000121000110454246788776555420675526983033365------32211000023432111
Q gi|254780434|r 119 GYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPN------TPGLRSLQKKKNLERLL 192 (362)
Q Consensus 119 G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPN------t~g~~~~~~~~~l~~~l 192 (362)
-+.....+.......|+.+-|.+.. ++.+.|=++++. -...||.|-||+.||- ..|-..+++++.+.+++
T Consensus 57 -r~~~~~~~~~~~~~~~~~~Ql~Gs~--P~~~aeAAk~i~-~~~ga~~IDiN~GCP~~Kitk~~aGsaLl~~p~~~~~iv 132 (336)
T TIGR00737 57 -RERTKKLLDIDEDETPISVQLFGSD--PDTMAEAAKLIN-EELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIV 132 (336)
T ss_pred -HHHHHHHHHHCCCCCCCEEEEECCC--HHHHHHHHHHHH-HCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf -5557765321258885478764788--268999999985-305898885367654884216763543235868999999
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 122444556553126885178650--577774888999998764498299980665553234577544632211356454
Q gi|254780434|r 193 IHVMQTREEEKIKTGKFVPIFLKI--SPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLF 270 (362)
Q Consensus 193 ~~v~~~~~~~~~~~~~~~Pi~vKL--sPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~ 270 (362)
.+++.+... .++||-||+ .+|...-+..+++++++++|+.++++ ..|+. .=+++|++=
T Consensus 133 ~~vV~AV~~------~~iPVTVK~R~GWD~~h~n~~~~a~~a~~~Ga~Av~l----HGRTR---------aQ~Y~G~A~- 192 (336)
T TIGR00737 133 KAVVDAVDA------QDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTL----HGRTR---------AQGYEGEAN- 192 (336)
T ss_pred HHHHHHHCC------CCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEH----HHHHH---------CCCCCCCCC-
T ss_conf 999987518------7665166551563624488899999998724000211----10000---------015788760-
Q ss_pred HHHHHHHHHHHHHCCCC--EEEEEECCCCCHHHHHHHHHC-CCCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 24689999999740897--489996788999999999983-99975452787706978999999999
Q gi|254780434|r 271 LKSTIALAKIRQRVGPK--IAIIGTGGISSTKDALDKIMA-GANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 271 ~~al~~i~~i~~~~~~~--i~IIg~GGI~s~~Da~e~l~a-GAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
-+.|+.+++.+.+. ||+||.|-|++++||..+|.- |||.|+++-|. +--|+++++|.+=|
T Consensus 193 ---wd~I~~vKq~v~~~GeiPVigNGDi~~~~~A~~~L~~TG~DGvm~gRG~-lG~PWl~~~i~~yL 255 (336)
T TIGR00737 193 ---WDIIARVKQAVRKEGEIPVIGNGDIFSPEDAKAMLETTGADGVMIGRGA-LGNPWLFKQIEQYL 255 (336)
T ss_pred ---HHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHCCCCEEEEECHH-CCCCHHHHHHHHHH
T ss_conf ---6899999999716875332227742467899999863788689850022-27875899999997
No 23
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.73 E-value=4.5e-14 Score=114.63 Aligned_cols=289 Identities=17% Similarity=0.158 Sum_probs=164.4
Q ss_pred HHHHHHHHHHH-HHHHHHCC-CCCCCCCCEEEECCEECCCCEEEC----CC-CCCCHHH--HHHHHHCCCCEEEC--CCC
Q ss_conf 78899999999-62011104-678896311688873359974853----46-8886779--88874036752410--200
Q gi|254780434|r 19 EIAHHLSIVAL-KSGLLSFF-PVHSDPRLNTKVAGISLSNPLGMA----AG-YDKNAEV--PIELLKLGFGFVEI--GTV 87 (362)
Q Consensus 19 e~ah~~~~~~~-~~~~~~~~-~~~~~~~L~~~~~Gl~~~nPiglA----aG-~dk~~~~--~~~l~~~G~G~v~~--kti 87 (362)
|.+++-...++ +..+.|+. ...+.++++|+++|.+++.||++| .+ +..++|. -+...+.|.-++.- .|.
T Consensus 26 e~Tl~~N~~Af~~~~l~Pr~L~dvs~~dtst~l~G~~~~~P~~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~ 105 (344)
T cd02922 26 EITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASC 105 (344)
T ss_pred HHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEECCEECCCCEEECHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 49999999999847676533248888988556898336775156647776432884569999999974886574057778
Q ss_pred CCCCC-CCCC--CCCEEEEECCCCCEEECCCCCCC-HHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 13687-8998--86268842555410000247777-78899987641000121000110454246788776555420675
Q gi|254780434|r 88 TPHPQ-AGNP--RPRVFRLTKDRAIINKLGFNNAG-YHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTI 163 (362)
Q Consensus 88 t~~p~-~GNp--~PR~~r~~~~~~iiN~~Gl~N~G-~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~ 163 (362)
+++.- +..| .|+.|.+.- +.++. .+.++++-++.... -|.+.+-..-.+. -..|.-..+......
T Consensus 106 slEdVa~a~~~~~~~wfQLY~---------~~dr~~~~~li~RA~~aG~~-alvlTvD~p~~G~-R~rd~r~~~~~~~~~ 174 (344)
T cd02922 106 SLEEIVDARPPDQPLFFQLYV---------NKDRTKTEELLKRAEKLGAK-AIFLTVDAPVLGK-RERDERLKAEEAVSD 174 (344)
T ss_pred CHHHHHHHCCCCCCEEEEEEC---------CCCHHHHHHHHHHHHHCCCC-EEEEECCCCCCCC-CHHHHHCCCCCCCCC
T ss_conf 889999865689866999824---------77679999999999986998-8999567888775-226665077778876
Q ss_pred CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--CCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 5269830333653221100002343211112244455655312688517865--05777748889999987644982999
Q gi|254780434|r 164 ASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK--ISPDLSEEELDDIAVEVLSHKVEGII 241 (362)
Q Consensus 164 aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK--LsPd~~~~~i~~ia~~a~~~g~dGiv 241 (362)
......+-..+. .....+......-..+......+...+.|+++| ++| +=+..+.++|+|||+
T Consensus 175 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~tw~di~~lr~~~~~plivKGIl~~--------~DA~~A~~~G~dgIi 239 (344)
T cd02922 175 GPAGKKTKAKGG-------GAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTV--------EDAVLAAEYGVDGIV 239 (344)
T ss_pred CCCCCCCCCCCC-------HHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEECCCCCH--------HHHHHHHHCCCCEEE
T ss_conf 654333344663-------16677775048889999999999866997010025779--------999999965998899
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf 80665553234577544632211356454246899999997---408974899967889999999999839997545278
Q gi|254780434|r 242 VSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQ---RVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSA 318 (362)
Q Consensus 242 ~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~---~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Ta 318 (362)
++|- ...+.-| .|.+++.+-++++ .++++++|+--|||.+|.|+++.|..||++|.++..
T Consensus 240 VSNH----------GGRqLD~-------~~~~i~~Lp~I~~~~~av~~~~~v~~DgGiR~G~DV~KAlALGA~aV~iGRp 302 (344)
T cd02922 240 LSNH----------GGRQLDT-------APAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRP 302 (344)
T ss_pred EECC----------CCCCCCC-------CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECHH
T ss_conf 7188----------6212578-------8318999899999889858870899718857578999999769998976789
Q ss_pred HHCC----CH----HHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 7706----97----89999999999999983899778961
Q gi|254780434|r 319 MIYE----GI----SLPKRIIQGLSDFLNKENEVNFENIR 350 (362)
Q Consensus 319 li~~----Gp----~~~~~I~~~L~~~l~~~G~~si~e~i 350 (362)
++|- |- .+++-+.+||..-|..-|..||+|+-
T Consensus 303 ~l~gla~~G~~Gv~~~l~il~~El~~~M~l~G~~si~~l~ 342 (344)
T cd02922 303 FLYALSAYGEEGVEKAIQILKDEIETTMRLLGVTSLDQLG 342 (344)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 9999884439999999999999999999985899888749
No 24
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.72 E-value=2.4e-15 Score=123.20 Aligned_cols=259 Identities=22% Similarity=0.283 Sum_probs=159.7
Q ss_pred CCCCCCCEEEECCEECCCCEEECC---CCCCCHHH----HHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEE
Q ss_conf 788963116888733599748534---68886779----88874036752410200136878998862688425554100
Q gi|254780434|r 39 VHSDPRLNTKVAGISLSNPLGMAA---GYDKNAEV----PIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIIN 111 (362)
Q Consensus 39 ~~~~~~L~~~~~Gl~~~nPiglAa---G~dk~~~~----~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN 111 (362)
..++.|++|+|+|.++..||+++| |-++..+. -+...+.|.++ -+||-+.
T Consensus 44 ~~~diD~st~~lG~~l~~P~~I~aMTGG~~~~~~IN~~LA~~A~~~gi~m-~vGSqr~---------------------- 100 (351)
T PRK05437 44 DLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAM-GVGSQRA---------------------- 100 (351)
T ss_pred CHHHCCCCEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCE-EECCHHH----------------------
T ss_conf 88777065258872537876886534687546289999999999839877-7331788----------------------
Q ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC----CCCCCCCCCHHH
Q ss_conf 0024777778899987641000121000110454246788776555420675526983033365----322110000234
Q gi|254780434|r 112 KLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPN----TPGLRSLQKKKN 187 (362)
Q Consensus 112 ~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPN----t~g~~~~~~~~~ 187 (362)
.+.++....-.+.+++..++.+++.|||.....+...++..+.++.+. ||++.|.+--+- ..|.|+|..
T Consensus 101 --al~~~~~~~sf~vvR~~~p~~~l~aNiGa~~~~~~~~~~~~~av~~i~--AdAl~iHlN~~QEl~qpEGDr~f~~--- 173 (351)
T PRK05437 101 --ALKDPELADSFSVVRKVAPDGLLFANIGAVQLYGYGVEEAQRAVEMIE--ADALQIHLNPLQELVQPEGDRDFRG--- 173 (351)
T ss_pred --HHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHC--CCCEEEECCCHHHHCCCCCCCCHHH---
T ss_conf --853914565699999868887388612721014358999999999716--7815752462454028888977889---
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEE-----CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC--------CCCCCC
Q ss_conf 3211112244455655312688517865-----057777488899999876449829998066555--------323457
Q gi|254780434|r 188 LERLLIHVMQTREEEKIKTGKFVPIFLK-----ISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLS--------RKGVQC 254 (362)
Q Consensus 188 l~~~l~~v~~~~~~~~~~~~~~~Pi~vK-----LsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~--------~~~~~~ 254 (362)
.+..+. ......++||+|| +| .+-+..+.+.|+++|.+.|.=+- |.. ..
T Consensus 174 ---~l~~I~------~i~~~~~vPVIvKeVG~Gis--------~e~a~~l~~~Gv~~IdVsg~GGTnf~~IE~~R~~-~~ 235 (351)
T PRK05437 174 ---WLDRIA------EIVSALPVPVIVKEVGFGIS--------KETAKRLADAGVKAIDVAGAGGTSWAAVENYRAK-QR 235 (351)
T ss_pred ---HHHHHH------HHHHHCCCCEEEEECCCCCC--------HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHC-CH
T ss_conf ---999999------99986799889852157889--------9999999967999999579988557999988710-21
Q ss_pred CCCC--CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC----CCH----
Q ss_conf 7544--632211356454246899999997408974899967889999999999839997545278770----697----
Q gi|254780434|r 255 SDNH--EQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY----EGI---- 324 (362)
Q Consensus 255 ~~~~--~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~----~Gp---- 324 (362)
.... ... |++ +...+.++++. .++++||++|||.++-|+.+-+..||++|.++-.+++ +|.
T Consensus 236 ~~~~~~~~w-Gip-------T~~sL~e~~~~-~~~~~iiasGGIR~glDi~KaLaLGA~~vgia~p~L~~l~~~g~e~~~ 306 (351)
T PRK05437 236 RLASYFADW-GIP-------TAQSLLEARSA-LPDLPIIASGGIRTGLDIAKALALGADAVGLAGPFLKAALEGGVEAVI 306 (351)
T ss_pred HHHHHHHHC-CCC-------HHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHH
T ss_conf 245777734-866-------89999999974-799829962787878999999995510777589999999856999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
Q ss_conf 899999999999999838997789616975
Q gi|254780434|r 325 SLPKRIIQGLSDFLNKENEVNFENIRGSYT 354 (362)
Q Consensus 325 ~~~~~I~~~L~~~l~~~G~~si~e~iG~~~ 354 (362)
..+..+.++|+..|---|..|++|++-+.+
T Consensus 307 ~~l~~~~~elk~~M~L~G~~~i~eL~~~~~ 336 (351)
T PRK05437 307 EEIEGWIEELKTAMFLTGAKNIAELRQVPL 336 (351)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHCCCE
T ss_conf 999999999999999868998999817999
No 25
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.68 E-value=2.8e-13 Score=109.29 Aligned_cols=287 Identities=20% Similarity=0.254 Sum_probs=165.1
Q ss_pred HHHHHHHHHHH-HHHHHHCC-CCCCCCCCEEEECCEECCCCEEECC----C-CCCCHHH--HHHHHHCCCCEEEC--CCC
Q ss_conf 78899999999-62011104-6788963116888733599748534----6-8886779--88874036752410--200
Q gi|254780434|r 19 EIAHHLSIVAL-KSGLLSFF-PVHSDPRLNTKVAGISLSNPLGMAA----G-YDKNAEV--PIELLKLGFGFVEI--GTV 87 (362)
Q Consensus 19 e~ah~~~~~~~-~~~~~~~~-~~~~~~~L~~~~~Gl~~~nPiglAa----G-~dk~~~~--~~~l~~~G~G~v~~--kti 87 (362)
|..++-...++ +..+.|+. ...+.++++|+++|.+++.||++|. + +-.++|. -+...+.|.-++.- .|.
T Consensus 34 e~t~~~N~~af~~~~l~PrvL~dv~~~d~~t~llG~~~~~P~~iaP~g~~~l~hp~gE~~~AraA~~~gi~~~lSt~s~~ 113 (351)
T cd04737 34 EWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNT 113 (351)
T ss_pred HHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEECCCCCCCCEEECHHHHHHHCCCCHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 29999999999847175533458777988435788025776265538874044684789999999975986340567777
Q ss_pred CCCC--CCCCCCCCEEEEECCCCCEEECCCCCCC-HHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 1368--7899886268842555410000247777-788999876410001210001104542467887765554206755
Q gi|254780434|r 88 TPHP--QAGNPRPRVFRLTKDRAIINKLGFNNAG-YHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIA 164 (362)
Q Consensus 88 t~~p--~~GNp~PR~~r~~~~~~iiN~~Gl~N~G-~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~a 164 (362)
+.+. +...-.|+.|.+.- ..+++ .+.++++.++.... -+.+-+-..-.+. ...|... .+
T Consensus 114 s~Eeia~a~~~~~~wfQLY~---------~~dr~~~~~li~RA~~aG~~-alvlTVD~p~~g~-Rerd~r~---~~---- 175 (351)
T cd04737 114 SLEEIAKASNGGPKWFQLYM---------SKDDGFNRSLLDRAKAAGAK-AIILTADATVGGN-READIRN---KF---- 175 (351)
T ss_pred CHHHHHHHCCCCCEEEEEEC---------CCCHHHHHHHHHHHHHCCCC-EEEEEECCCCCCC-CHHHHHC---CC----
T ss_conf 89999974679970899713---------58879999999999986999-8999631788786-2778862---99----
Q ss_pred CEEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--CCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 269830333653221----100002343211112244455655312688517865--05777748889999987644982
Q gi|254780434|r 165 SYFTINISSPNTPGL----RSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK--ISPDLSEEELDDIAVEVLSHKVE 238 (362)
Q Consensus 165 D~iEiNiSCPNt~g~----~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK--LsPd~~~~~i~~ia~~a~~~g~d 238 (362)
.+-.++||.... ...............-..+.+-...+...+.|+++| ++| +=|..|.++|+|
T Consensus 176 ---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~di~~lr~~~~lplilKGI~~~--------eDA~~A~~~G~d 244 (351)
T cd04737 176 ---QFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSP--------EDADVAINAGAD 244 (351)
T ss_pred ---CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEECCCCCH--------HHHHHHHHCCCC
T ss_conf ---889998722344677755555688988632579989999999864998532366779--------999999874998
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf 99980665553234577544632211356454246899999997408974899967889999999999839997545278
Q gi|254780434|r 239 GIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSA 318 (362)
Q Consensus 239 Giv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Ta 318 (362)
||+++|- ..++.-| .|.+.+.+-++++.++++++|+--|||.+|.|+++.|..||++|.++..
T Consensus 245 gIvVSNH----------GGRQLD~-------~p~~i~~LpeI~~av~~~~~V~~DgGIR~G~DV~KALALGA~aV~iGRp 307 (351)
T cd04737 245 GIWVSNH----------GGRQLDG-------GPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRP 307 (351)
T ss_pred EEEECCC----------CCCCCCC-------CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECHH
T ss_conf 8997787----------5123567-------6047889999999866896499769867468999999769988975789
Q ss_pred HHCC----CH----HHHHHHHHHHHHHHHHCCCCCHHHHHC
Q ss_conf 7706----97----899999999999999838997789616
Q gi|254780434|r 319 MIYE----GI----SLPKRIIQGLSDFLNKENEVNFENIRG 351 (362)
Q Consensus 319 li~~----Gp----~~~~~I~~~L~~~l~~~G~~si~e~iG 351 (362)
++|- |- .+++-+.+||..-|..-|++||+|+--
T Consensus 308 ~l~glaa~G~~GV~~~l~iL~~El~~~M~l~G~~si~dl~~ 348 (351)
T cd04737 308 VLYGLALGGAQGVASVLEHLNKELKIVMQLAGTRTIEDVKR 348 (351)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCC
T ss_conf 99988713389999999999999999999868999888490
No 26
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=99.67 E-value=5.9e-13 Score=107.10 Aligned_cols=290 Identities=18% Similarity=0.239 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHH-HHHHHCC-CCCCCCCCEEEECCEECCCCEEEC----CC-CCCCHHH--HHHHHHCCCCEEECC--CC
Q ss_conf 788999999996-2011104-678896311688873359974853----46-8886779--888740367524102--00
Q gi|254780434|r 19 EIAHHLSIVALK-SGLLSFF-PVHSDPRLNTKVAGISLSNPLGMA----AG-YDKNAEV--PIELLKLGFGFVEIG--TV 87 (362)
Q Consensus 19 e~ah~~~~~~~~-~~~~~~~-~~~~~~~L~~~~~Gl~~~nPiglA----aG-~dk~~~~--~~~l~~~G~G~v~~k--ti 87 (362)
|.+++-...+++ ..+.|+. ...++++++++++|.++.-||++| ++ +..++|. -+.....|.-++..- |.
T Consensus 47 e~tl~~N~~af~~~~l~PRvL~dv~~~d~~t~llG~~~~~P~~iaP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~ss~ 126 (383)
T cd03332 47 ESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSS 126 (383)
T ss_pred HHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEECCEECCCCEEECHHHHHHCCCCCHHHHHHHHHHHHCCCEECCCCCCC
T ss_conf 69999999999855776711358888888645798156777388778774414897789999999983586220577678
Q ss_pred CCCCC-CCC-CCCCEEEEE--CCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEE----CCCCCH-----------H
Q ss_conf 13687-899-886268842--5554100002477777889998764100012100011----045424-----------6
Q gi|254780434|r 88 TPHPQ-AGN-PRPRVFRLT--KDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLG----ANKDSK-----------D 148 (362)
Q Consensus 88 t~~p~-~GN-p~PR~~r~~--~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~----~~~~s~-----------~ 148 (362)
+++.- .-+ ..|+.|.+. .|+.+ .+.+++|-++.... -+.+.+- ++.+-+ .
T Consensus 127 slEeva~~~~~~~~wfQLY~~~Dr~~----------~~~ll~RA~~aG~~-aLvlTVD~Pv~G~Rerd~r~g~~P~~~~~ 195 (383)
T cd03332 127 SIEDVAAAAGDAPRWFQLYWPKDDDL----------TESLLRRAEKAGYR-VLVVTLDTWSLGWRPRDLDLGYLPFLRGI 195 (383)
T ss_pred CHHHHHHHCCCCCEEEEEECCCCHHH----------HHHHHHHHHHCCCC-EEEEECCCCCCCCCHHHHHCCCCCCCCCH
T ss_conf 89999986689963999951588899----------99999999973897-79992268666876545532688643303
Q ss_pred HHHHHHH---HHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--CCCCCCHH
Q ss_conf 7887765---554206755269830333653221100002343211112244455655312688517865--05777748
Q gi|254780434|r 149 FILDYVS---GIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK--ISPDLSEE 223 (362)
Q Consensus 149 ~~~dy~~---~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK--LsPd~~~~ 223 (362)
...++.. ....+. .-...+...+..... ............-..+.+....+...+.|+++| ++|
T Consensus 196 ~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~d~~ltW~di~wlr~~w~~plilKGI~~~----- 264 (383)
T cd03332 196 GIANYFSDPVFRKKLA---EPVGEDPEAPPPMEA---AVARFVSVFSGPSLTWEDLAFLREWTDLPIVLKGILHP----- 264 (383)
T ss_pred HHHHHCCCHHHHHHHC---CCCCCCCCCCCCCHH---HHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEECCCCCH-----
T ss_conf 6777547889999732---567765456775014---59999985378889989999999876998532356899-----
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH
Q ss_conf 88999998764498299980665553234577544632211356454246899999997408974899967889999999
Q gi|254780434|r 224 ELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDAL 303 (362)
Q Consensus 224 ~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~ 303 (362)
+=|..|.++|+|||+++|- ...+.-+ .|.+.+.+-++++.++++++|+--|||.+|.|++
T Consensus 265 ---eDA~~A~~~G~dgIiVSNH----------GGRQLD~-------apa~i~~LpeI~~aV~~~~~V~~DgGIRrG~DV~ 324 (383)
T cd03332 265 ---DDARRAVEAGVDGVVVSNH----------GGRQVDG-------SIAALDALPEIVEAVGDRLTVLFDSGVRTGADIM 324 (383)
T ss_pred ---HHHHHHHHCCCCEEEEECC----------CCCCCCC-------CCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH
T ss_conf ---9999999759988998078----------6344678-------8327899999999847998499979978679999
Q ss_pred HHHHCCCCEEEECHHHHCC----CH----HHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 9998399975452787706----97----89999999999999983899778961
Q gi|254780434|r 304 DKIMAGANLIQLYSAMIYE----GI----SLPKRIIQGLSDFLNKENEVNFENIR 350 (362)
Q Consensus 304 e~l~aGAs~VQi~Tali~~----Gp----~~~~~I~~~L~~~l~~~G~~si~e~i 350 (362)
+.+..||++|.++..++|- |- .++.-+.+||..-|..-|..||+|+-
T Consensus 325 KAlALGA~~V~iGRp~l~glaa~G~~GV~~~l~iL~~El~~~M~l~G~~si~el~ 379 (383)
T cd03332 325 KALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELT 379 (383)
T ss_pred HHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 9997699989877899998772319999999999999999999985899977859
No 27
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=99.67 E-value=2.5e-13 Score=109.70 Aligned_cols=294 Identities=21% Similarity=0.282 Sum_probs=168.9
Q ss_pred HHHHHHHHHHH-HHHHHHC-CCCCCCCCCEEEECCEECCCCEEEC----CC-CCCCHHH--HHHHHHCCCCEEECC--CC
Q ss_conf 78899999999-6201110-4678896311688873359974853----46-8886779--888740367524102--00
Q gi|254780434|r 19 EIAHHLSIVAL-KSGLLSF-FPVHSDPRLNTKVAGISLSNPLGMA----AG-YDKNAEV--PIELLKLGFGFVEIG--TV 87 (362)
Q Consensus 19 e~ah~~~~~~~-~~~~~~~-~~~~~~~~L~~~~~Gl~~~nPiglA----aG-~dk~~~~--~~~l~~~G~G~v~~k--ti 87 (362)
|.+.+-...++ +..+.|+ +...+..+++++++|.+++-||++| ++ +..++|. -+...+.|.-++.-- |.
T Consensus 32 e~tl~~N~~af~~~~l~PRvL~dvs~~dtst~llG~~~~~P~~iaP~g~~~l~hp~gE~a~ArAA~~~gi~~~lSt~ss~ 111 (381)
T PRK11197 32 EYTLRRNVEDLADIALRQRVLKNMSDLSLETELFGETLAMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVC 111 (381)
T ss_pred HHHHHHHHHHHHHCCEECCCCCCCCCCCCCEEECCCCCCCCEEECHHHHHCCCCCCHHHHHHHHHHHHCCCEEECCCCCC
T ss_conf 29999999999846175501468777888634788306777346757774167897579999999970771783277656
Q ss_pred CCCC-CCCCCCCCEEEEECCCCCEEECCCCCCC-HHHHHHHHHHHHHCCCCCCEEE----CCCCCH---------HHHHH
Q ss_conf 1368-7899886268842555410000247777-7889998764100012100011----045424---------67887
Q gi|254780434|r 88 TPHP-QAGNPRPRVFRLTKDRAIINKLGFNNAG-YHTVFSRLSKIQPTSPIGINLG----ANKDSK---------DFILD 152 (362)
Q Consensus 88 t~~p-~~GNp~PR~~r~~~~~~iiN~~Gl~N~G-~~~~~~~l~~~~~~~pi~vsI~----~~~~s~---------~~~~d 152 (362)
+++. .+..+.|+.|.+.- +.+++ .+.+++|-++.... -+.+.+- ++.+.+ ....-
T Consensus 112 slEeva~a~~~~~WfQLY~---------~~Dr~~~~~ll~RA~~aG~~-alvlTVD~pv~g~R~rd~rn~~~~p~~~~~~ 181 (381)
T PRK11197 112 PIEEVAPAIKRPMWFQLYV---------LRDRGFMRNALERAKAAGCS-TLVFTVDMPVPGARYRDAHSGMSGPNAAMRR 181 (381)
T ss_pred CHHHHHHHCCCCEEEEEEE---------CCCHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCHHHHCCCCCCCCCHHHH
T ss_conf 7999986358973899841---------38889999999999984998-7998078887786655430677789812878
Q ss_pred HHHHHHHHCCCCCEEEEE-CCCC----CCCC----CCCCCC-HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--CCCCC
Q ss_conf 765554206755269830-3336----5322----110000-2343211112244455655312688517865--05777
Q gi|254780434|r 153 YVSGIRLFFTIASYFTIN-ISSP----NTPG----LRSLQK-KKNLERLLIHVMQTREEEKIKTGKFVPIFLK--ISPDL 220 (362)
Q Consensus 153 y~~~~~~~~~~aD~iEiN-iSCP----Nt~g----~~~~~~-~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK--LsPd~ 220 (362)
+.+.+.. +. =.++.. ..-| |... .....+ ...+...+..-..+.+....+...+.||++| ++|
T Consensus 182 ~~~~~~~--P~-w~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ltW~di~wlr~~w~~plvlKGIl~~-- 256 (381)
T PRK11197 182 YLQAVTH--PQ-WAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIREFWDGPMVIKGILDP-- 256 (381)
T ss_pred HHHHHCC--CH-HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCH--
T ss_conf 9988648--17-877633447886544310013776558889999875058889999999999872997678525889--
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHH
Q ss_conf 74888999998764498299980665553234577544632211356454246899999997408974899967889999
Q gi|254780434|r 221 SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTK 300 (362)
Q Consensus 221 ~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~ 300 (362)
+=+..|.++|+|||+++|- ...+.-+ .|.+++++-++++.++++++|+--|||.+|.
T Consensus 257 ------eDA~~A~~~G~dgIiVSNH----------GGRQLD~-------apa~i~~LpeI~~aV~~~~~V~~DgGiRrG~ 313 (381)
T PRK11197 257 ------EDARDAVRFGADGIVVSNH----------GGRQLDG-------VLSSARALPAIADAVKGDIAILADSGIRNGL 313 (381)
T ss_pred ------HHHHHHHHCCCCEEEEECC----------CCCCCCC-------CCCHHHHHHHHHHHHCCCCEEEEECCCCCHH
T ss_conf ------9999999669988999577----------6321567-------8448999999999867897399968978668
Q ss_pred HHHHHHHCCCCEEEECHHHHCC----C---H-HHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 9999998399975452787706----9---7-89999999999999983899778961
Q gi|254780434|r 301 DALDKIMAGANLIQLYSAMIYE----G---I-SLPKRIIQGLSDFLNKENEVNFENIR 350 (362)
Q Consensus 301 Da~e~l~aGAs~VQi~Tali~~----G---p-~~~~~I~~~L~~~l~~~G~~si~e~i 350 (362)
|+++.|..||++|.++..++|- | . .++.-+.+||..-|..-|..+|+|+-
T Consensus 314 DV~KALALGA~aV~vGRp~lygLaa~G~~GV~~~l~iL~~El~~~M~l~G~~~i~~l~ 371 (381)
T PRK11197 314 DVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEIT 371 (381)
T ss_pred HHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 9999997699889767599998771338899999999999999999985899967879
No 28
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=4.4e-14 Score=114.75 Aligned_cols=226 Identities=19% Similarity=0.244 Sum_probs=151.5
Q ss_pred EECCEECCCCEEEC--CCCCCCHHHHHHHHH-CCC-CEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHH
Q ss_conf 88873359974853--468886779888740-367-52410200136878998862688425554100002477777889
Q gi|254780434|r 48 KVAGISLSNPLGMA--AGYDKNAEVPIELLK-LGF-GFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTV 123 (362)
Q Consensus 48 ~~~Gl~~~nPiglA--aG~dk~~~~~~~l~~-~G~-G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~ 123 (362)
++....++|++.+| +|. +|. .++.+.. .|. +.+.+-=|+..+..=+++.++
T Consensus 3 ~~~~~~~~~~~~lAPM~gv-td~-~fR~l~~~~ga~~l~~TEmv~~~~~~~~~~~~~----------------------- 57 (323)
T COG0042 3 KIGLIELRNRVILAPMAGV-TDL-PFRRLARELGAYDLLYTEMVSAKALLHGRKKFL----------------------- 57 (323)
T ss_pred CCCCCCCCCCEEEECCCCC-CCH-HHHHHHHHHCCCCEEEEEEEECCHHHCCCHHHH-----------------------
T ss_conf 6455556787788348898-668-999999995887528974045304552770044-----------------------
Q ss_pred HHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC------CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9987641000121000110454246788776555420675526983033365------3221100002343211112244
Q gi|254780434|r 124 FSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPN------TPGLRSLQKKKNLERLLIHVMQ 197 (362)
Q Consensus 124 ~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPN------t~g~~~~~~~~~l~~~l~~v~~ 197 (362)
..+.......|+.+.|+++.+ +.+.+-+..+.... +|.|+||..||- ..|-..+.+++.+.+++++++.
T Consensus 58 -~~~~~~~~e~p~~vQl~gsdp--~~laeaA~~~~~~g--~~~IDlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~ 132 (323)
T COG0042 58 -LLLDELEEERPVAVQLGGSDP--ELLAEAAKIAEELG--ADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVE 132 (323)
T ss_pred -HCCCCCCCCCCEEEEECCCCH--HHHHHHHHHHHHCC--CCEEEEECCCCCHHHHCCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf -305645667877999738998--99999999998669--9989876899928980898447771798999999999998
Q ss_pred HHHHHHHHCCCCCEEEEECC--CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 45565531268851786505--7777488899999876449829998066555323457754463221135645424689
Q gi|254780434|r 198 TREEEKIKTGKFVPIFLKIS--PDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTI 275 (362)
Q Consensus 198 ~~~~~~~~~~~~~Pi~vKLs--Pd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~ 275 (362)
... ++||.||+- .|-.+....+++++++++|++.+++=- |.. .-+++|+ .-.+
T Consensus 133 av~--------~iPVTVKiRlG~d~~~~~~~~ia~~~~~~G~~~ltVHg----Rtr---------~~~y~~~----a~~~ 187 (323)
T COG0042 133 AVG--------DIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHG----RTR---------AQGYLGP----ADWD 187 (323)
T ss_pred HCC--------CCCEEEEEECCCCCHHCCHHHHHHHHHHCCCCEEEEEC----CCH---------HHCCCCC----CCHH
T ss_conf 538--------88749998578780020099999999967987899955----667---------6468986----4879
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHC-CCCEEEECHHHHCCCHHHHHHH
Q ss_conf 999999740897489996788999999999983-9997545278770697899999
Q gi|254780434|r 276 ALAKIRQRVGPKIAIIGTGGISSTKDALDKIMA-GANLIQLYSAMIYEGISLPKRI 330 (362)
Q Consensus 276 ~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~a-GAs~VQi~Tali~~Gp~~~~~I 330 (362)
.|+++++.++. +|||+.|+|.|++|+.+++.- |+|.|+++.+. |+.|+++++|
T Consensus 188 ~I~~vk~~~~~-ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga-~~nP~l~~~i 241 (323)
T COG0042 188 YIKELKEAVPS-IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGA-LGNPWLFRQI 241 (323)
T ss_pred HHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHHHCCCEEEECHHH-HCCCHHHHHH
T ss_conf 99999986799-759857994999999999984189879974353-1695575533
No 29
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.65 E-value=1.5e-14 Score=117.90 Aligned_cols=176 Identities=22% Similarity=0.257 Sum_probs=126.7
Q ss_pred HHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCC------CCCCCCCCHHHHHHHHHHHH
Q ss_conf 998764100012100011045424678877655542067-55269830333653------22110000234321111224
Q gi|254780434|r 124 FSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFT-IASYFTINISSPNT------PGLRSLQKKKNLERLLIHVM 196 (362)
Q Consensus 124 ~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~-~aD~iEiNiSCPNt------~g~~~~~~~~~l~~~l~~v~ 196 (362)
...+.....+.|+++.|++|. .+++.+.++.+.+ ++|.+.||+.||-- .|-..+.+++.+.+++.+++
T Consensus 45 ~~~~~~~~~e~p~~~Ql~g~~-----p~~~~~aa~~~~~~g~d~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~v~~iv~~~~ 119 (231)
T cd02801 45 LRLLTRNPEERPLIVQLGGSD-----PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVR 119 (231)
T ss_pred HHHHCCCCCCCEEEEEECCCC-----HHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCCHHHHHCHHHHHHHHHHHH
T ss_conf 987244866780799875898-----999999999887539999998389996997089830787629789999999999
Q ss_pred HHHHHHHHHCCCCCEEEEECC--CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 445565531268851786505--777748889999987644982999806655532345775446322113564542468
Q gi|254780434|r 197 QTREEEKIKTGKFVPIFLKIS--PDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKST 274 (362)
Q Consensus 197 ~~~~~~~~~~~~~~Pi~vKLs--Pd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al 274 (362)
+. ..+||.||+- .+- .++..++++.++++|++.+++=- |.... .++|++ -.
T Consensus 120 ~~---------~~ipVsvKiRlg~~~-~~~~~~~~~~l~~~G~~~ltvH~----Rt~~q---------~~~~~a----~~ 172 (231)
T cd02801 120 EA---------VPIPVTVKIRLGWDD-EEETLELAKALEDAGASALTVHG----RTREQ---------RYSGPA----DW 172 (231)
T ss_pred HH---------CCCCEEEEEEECCCC-HHHHHHHHHHHHHCCCCEEEEEC----CCHHH---------CCCCCC----CH
T ss_conf 75---------699479999707786-34799999999976998999835----61441---------467762----26
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHC-CCCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 9999999740897489996788999999999983-99975452787706978999999999
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMA-GANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~a-GAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
+.|+++++.. ++|+|+.|||.|.+|+.+++.. |+|.|+++.+.+.+ |+++++|.+.+
T Consensus 173 e~i~~~~~~~--~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~n-P~iF~~i~~~~ 230 (231)
T cd02801 173 DYIAEIKEAV--SIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGN-PWLFREIKELL 230 (231)
T ss_pred HHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHCCCEEEECHHHHHC-CHHHHHHHHHH
T ss_conf 9999998659--9779983890999999999985099999987888769-88999999975
No 30
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=99.65 E-value=4.7e-15 Score=121.27 Aligned_cols=262 Identities=19% Similarity=0.260 Sum_probs=172.2
Q ss_pred CCCCCCCEEEECCEECCCCEEECCCCCC--------CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCE
Q ss_conf 7889631168887335997485346888--------67798887403675241020013687899886268842555410
Q gi|254780434|r 39 VHSDPRLNTKVAGISLSNPLGMAAGYDK--------NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAII 110 (362)
Q Consensus 39 ~~~~~~L~~~~~Gl~~~nPiglAaG~dk--------~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~ii 110 (362)
..+|.||+|+|+|.+|+-||.++|=... |.+.-+...++|++ +-+||- |.
T Consensus 40 ~~~~idl~t~flG~~~~~P~~I~aMTGG~~~~a~~IN~~LA~aA~e~gi~-mgvGSq-----------ra---------- 97 (349)
T TIGR02151 40 NLDEIDLTTEFLGKRLKAPFLINAMTGGSEEKAGKINRKLARAAEELGIP-MGVGSQ-----------RA---------- 97 (349)
T ss_pred CHHHCCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC-EEECHH-----------HH----------
T ss_conf 75362642444682211676761455773678889989999999981981-543002-----------22----------
Q ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCH----HHHHHHHHHHHHHCCCCCEEEEECCCCC----CCCCCCC
Q ss_conf 0002477777889998764100012100011045424----6788776555420675526983033365----3221100
Q gi|254780434|r 111 NKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSK----DFILDYVSGIRLFFTIASYFTINISSPN----TPGLRSL 182 (362)
Q Consensus 111 N~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~----~~~~dy~~~~~~~~~~aD~iEiNiSCPN----t~g~~~~ 182 (362)
-|.+|-...-.+.+++..|+.|+++|||....-+ ...++-.+.++.+. ||+|.|-+-... ..|.|.|
T Consensus 98 ---al~~P~~~~tF~~vR~~aP~~~l~AN~GA~q~~~~~~~~g~~~~~~aid~i~--AdAL~iHlN~~QE~vqpEGDr~F 172 (349)
T TIGR02151 98 ---ALKDPEVAETFEVVREEAPNGPLIANIGAPQLVEGGKKYGVEEAQEAIDMIE--ADALAIHLNVLQELVQPEGDRNF 172 (349)
T ss_pred ---HHCCCHHHHHHHHHHHHCCCCCEEECCCHHHHHCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHCCCCCCCCCHHH
T ss_conf ---1127124666999997679833787178788740653448899999998751--01335543233025579997015
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE-----CCCCCCHHHHHHHHHHHHHCCCCEEEEEC---CC-----CCC
Q ss_conf 002343211112244455655312688517865-----05777748889999987644982999806---65-----553
Q gi|254780434|r 183 QKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK-----ISPDLSEEELDDIAVEVLSHKVEGIIVSN---TT-----LSR 249 (362)
Q Consensus 183 ~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK-----LsPd~~~~~i~~ia~~a~~~g~dGiv~~N---T~-----~~~ 249 (362)
....+..+.+. ...-++||+|| || .+.++.+.+.|+++|=+.- |. ..|
T Consensus 173 -----~~G~l~~i~~~------~~~~~vPVIvKEvG~G~S--------~e~a~~L~~~Gv~aiDv~G~GGTswa~vE~~R 233 (349)
T TIGR02151 173 -----SKGWLEKIAEI------CSAVSVPVIVKEVGFGIS--------KEVAKLLADAGVKAIDVSGAGGTSWAAVENYR 233 (349)
T ss_pred -----HHHHHHHHHHH------HHHCCCCEEEEECCCCCC--------HHHHHHHHHCCEEEEEECCCCCCCHHHHHHHH
T ss_conf -----65389999999------965289879982157998--------89999998789008870787675599999887
Q ss_pred -CCCC--CC----CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-
Q ss_conf -2345--77----544632211356454246899999997408974899967889999999999839997545278770-
Q gi|254780434|r 250 -KGVQ--CS----DNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY- 321 (362)
Q Consensus 250 -~~~~--~~----~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~- 321 (362)
..-. .. ..-.+. |+| +..++.+++....++.||||+|||.||-|+.+-|..||++|.+.-.+..
T Consensus 234 r~~~~~~~~~r~a~~f~~W-Gip-------T~~sL~~~~~~~~~~~~~iASGG~r~GlD~AKAlALGA~~~G~A~~~L~~ 305 (349)
T TIGR02151 234 RAKESNQKYERLASAFSDW-GIP-------TAASLLEVRSIDAPDAPLIASGGLRTGLDVAKALALGADAVGMARPLLKA 305 (349)
T ss_pred HHCCCCCHHHHHHHHHHHC-CCC-------HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5157523578887777414-886-------68999998642124773688467778889999999621188888999998
Q ss_pred ---CCH----HHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
Q ss_conf ---697----899999999999999838997789616975
Q gi|254780434|r 322 ---EGI----SLPKRIIQGLSDFLNKENEVNFENIRGSYT 354 (362)
Q Consensus 322 ---~Gp----~~~~~I~~~L~~~l~~~G~~si~e~iG~~~ 354 (362)
+|+ ..++.+.+||+-.|=--|.+||.|+..+..
T Consensus 306 ~~~~g~e~~~~~~~~~~~eLk~~mfl~G~~~i~EL~~~~~ 345 (349)
T TIGR02151 306 ALDEGEEAVIEEIELIIEELKVAMFLTGAKNIKELKKVPL 345 (349)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCE
T ss_conf 8526988999999999999999998717988798617871
No 31
>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=99.64 E-value=3.6e-14 Score=115.35 Aligned_cols=176 Identities=20% Similarity=0.267 Sum_probs=127.6
Q ss_pred HHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCC------CCCCCCCCCHHHHHHHHHHH
Q ss_conf 9998764100012100011045424678877655542067-5526983033365------32211000023432111122
Q gi|254780434|r 123 VFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFT-IASYFTINISSPN------TPGLRSLQKKKNLERLLIHV 195 (362)
Q Consensus 123 ~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~-~aD~iEiNiSCPN------t~g~~~~~~~~~l~~~l~~v 195 (362)
....+.......|+++.|+++.+ +++.+.++.+.+ ++|.+.||+.||- ..|--.+.+++.+.+++.++
T Consensus 43 ~~~~~~~~~~e~P~~~Ql~G~dp-----~~~~~aa~~~~~~g~d~IDlN~GCP~~~v~~~g~GsaLl~~p~~~~~iv~a~ 117 (309)
T pfam01207 43 RELMLPELEEPTPLAVQLGGSDP-----ALLAEAAKLVADLGADIIDINMGCPAKKVTRGGAGAALLRDPDLVAQIVKAV 117 (309)
T ss_pred HHHHCCCCCCCCCEEEEEECCCH-----HHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCCEEHHHCHHHHHHHHHHH
T ss_conf 88742007678972899936999-----9999999998863999896518999999878997762541778999999999
Q ss_pred HHHHHHHHHHCCCCCEEEEEC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 444556553126885178650--577774888999998764498299980665553234577544632211356454246
Q gi|254780434|r 196 MQTREEEKIKTGKFVPIFLKI--SPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKS 273 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~Pi~vKL--sPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~a 273 (362)
+.. ..+||.||+ .+|-+.+...++++.++++|++.|++-- |.. .=+++|++ -
T Consensus 118 ~~~---------~~~PVtvK~RlG~d~~~~~~~~~~~~l~~~G~~~itvH~----Rt~---------~q~~~g~a----~ 171 (309)
T pfam01207 118 VKA---------VDIPVTVKIRIGWDESHENAVEIARRVEDAGAQALTVHG----RTR---------AQNYEGPA----D 171 (309)
T ss_pred HHH---------CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEC----CCH---------HHCCCCCC----C
T ss_conf 975---------588546754337887638899999999846888799967----632---------40267865----4
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH-CCCCEEEECHHHHCCCHHHHHHHHH
Q ss_conf 8999999974089748999678899999999998-3999754527877069789999999
Q gi|254780434|r 274 TIALAKIRQRVGPKIAIIGTGGISSTKDALDKIM-AGANLIQLYSAMIYEGISLPKRIIQ 332 (362)
Q Consensus 274 l~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~-aGAs~VQi~Tali~~Gp~~~~~I~~ 332 (362)
-+.|+++++.+ .+|+|+.|+|.|.+|+.+++. .|+|.|+++.+.+.+ |++++++..
T Consensus 172 w~~i~~~k~~~--~ipvi~NGdi~~~~d~~~~l~~tg~dgvMigRga~~n-Pwif~~~~~ 228 (309)
T pfam01207 172 WDAIKQVKQAV--SIPVIANGDITDAEDAQRCLSYTGADGVMIGRGALGN-PWLFAEQHT 228 (309)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHHHCCCEEEECHHHHHC-CHHHHHHHH
T ss_conf 18999999858--9828980894889999999861099999984897749-888898899
No 32
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.61 E-value=7.4e-14 Score=113.18 Aligned_cols=179 Identities=18% Similarity=0.196 Sum_probs=125.5
Q ss_pred HHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCC------CCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 764100012100011045424678877655542067-55269830333653------22110000234321111224445
Q gi|254780434|r 127 LSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFT-IASYFTINISSPNT------PGLRSLQKKKNLERLLIHVMQTR 199 (362)
Q Consensus 127 l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~-~aD~iEiNiSCPNt------~g~~~~~~~~~l~~~l~~v~~~~ 199 (362)
|.......|+++.|+++.+ +. +.+.++.+.+ +.|.+.||+.||-- -|-..+.+++.+.+++.+++..
T Consensus 58 l~~~~~E~Pv~vQl~G~dp--~~---la~Aa~i~~~~g~d~IDlN~GCP~~kV~~g~~Ga~Lm~~p~~v~~iv~a~~~a- 131 (333)
T PRK11815 58 LAFDPEEHPVALQLGGSDP--AD---LAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDA- 131 (333)
T ss_pred HHCCCCCCCEEEEECCCCH--HH---HHHHHHHHHHCCCCEECCCCCCCHHHHHCCCEEHHHHCCHHHHHHHHHHHHHH-
T ss_conf 5069877987999747999--99---99999999873988535238998688732780178707999999999999873-
Q ss_pred HHHHHHCCCCCEEEEEC--CCCCC--HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC---CCHH
Q ss_conf 56553126885178650--57777--48889999987644982999806655532345775446322113564---5424
Q gi|254780434|r 200 EEEKIKTGKFVPIFLKI--SPDLS--EEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSP---LFLK 272 (362)
Q Consensus 200 ~~~~~~~~~~~Pi~vKL--sPd~~--~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~---i~~~ 272 (362)
.++||-||+ ..|-. .+.+.++++.++++|++.+++- .|. ....|+|++. +-|.
T Consensus 132 --------~~~PVTvK~RlG~d~~d~~~~l~~f~~~~~~aG~~~i~vH----~R~--------a~l~Glspk~nR~ippl 191 (333)
T PRK11815 132 --------VSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDRFIVH----ARK--------AWLKGLSPKENREIPPL 191 (333)
T ss_pred --------CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEE----EHH--------HHHCCCCHHHHCCCCCH
T ss_conf --------4885357863167777528999999999997599889996----027--------87726787775058730
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 68999999974089748999678899999999998399975452787706978999999999
Q gi|254780434|r 273 STIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 273 al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
--..|+++++.. +++|||+.|||.|.+|+.+++.- +|.|+++.+. |.-|+++.+|.+.+
T Consensus 192 ~~~~v~~lk~~~-p~ipvi~NGdI~s~~~~~~~l~~-~DGVMiGRga-~~nPwif~~id~~~ 250 (333)
T PRK11815 192 DYDRVYRLKRDF-PHLTIEINGGIKTLEEAKEHLQH-VDGVMIGRAA-YHNPYLLAEVDREL 250 (333)
T ss_pred HHHHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHHC-CCEEEEHHHH-HCCCHHHHHHHHHH
T ss_conf 489999999766-78718845996999999999855-9962114867-55997899999998
No 33
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.61 E-value=1.3e-13 Score=111.54 Aligned_cols=170 Identities=16% Similarity=0.191 Sum_probs=121.8
Q ss_pred HHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC------CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 000121000110454246788776555420675526983033365------32211000023432111122444556553
Q gi|254780434|r 131 QPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPN------TPGLRSLQKKKNLERLLIHVMQTREEEKI 204 (362)
Q Consensus 131 ~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPN------t~g~~~~~~~~~l~~~l~~v~~~~~~~~~ 204 (362)
..+.|+++.|.++. .+.+.+-+..+.++ ++|.+.||+.||- ..|-..+.+++.+.+++.++++..
T Consensus 60 ~~~~Pv~vQl~G~d--pe~~a~aA~~~~e~--g~~~IDlN~GCP~~~V~k~g~Gs~Ll~~p~~~~~iv~a~~~~v----- 130 (312)
T PRK10550 60 PSGTLVRIQLLGQY--PQWLAENAARAVEL--GSYGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAV----- 130 (312)
T ss_pred CCCCCEEEEEECCC--HHHHHHHHHHHHHC--CCCEEEEECCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHHHC-----
T ss_conf 77883688842788--89999999999976--9996625479997896689926853289779999999999745-----
Q ss_pred HCCCCCEEEEEC--CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 126885178650--577774888999998764498299980665553234577544632211356454246899999997
Q gi|254780434|r 205 KTGKFVPIFLKI--SPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQ 282 (362)
Q Consensus 205 ~~~~~~Pi~vKL--sPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~ 282 (362)
..++||-||+ ..|-. +...++++.++++|++.|++-- |.. .-+++|++.. -..|+++++
T Consensus 131 --~~~iPVtvK~RlG~~~~-~~~~e~~~~~~~~G~~~ltvH~----RT~---------~q~y~~~~~d---w~~i~~~~~ 191 (312)
T PRK10550 131 --PAHLPVTVKVRLGWDSG-DRKFEIADAVQQAGATELVVHG----RTK---------EQGYRAEHID---WQAIGEIRQ 191 (312)
T ss_pred --CCCCCCEEEEECCCCCC-CHHHHHHHHHHHCCCCEEEEEC----CCH---------HHCCCCCCCC---HHHHHHHHH
T ss_conf --87899547753589986-3199999999973998799905----526---------5358998348---999999997
Q ss_pred HCCCCEEEEEECCCCCHHHHHHHHH-CCCCEEEECHHHHCCCHHHHHHHH
Q ss_conf 4089748999678899999999998-399975452787706978999999
Q gi|254780434|r 283 RVGPKIAIIGTGGISSTKDALDKIM-AGANLIQLYSAMIYEGISLPKRII 331 (362)
Q Consensus 283 ~~~~~i~IIg~GGI~s~~Da~e~l~-aGAs~VQi~Tali~~Gp~~~~~I~ 331 (362)
.+ ++|+||.|+|.|.+|+.+++. -|+|.|+++.|.+-+ |+++++|.
T Consensus 192 ~~--~iPvi~NGdI~s~~d~~~~~~~tg~dgvMiGRgal~n-P~l~~~i~ 238 (312)
T PRK10550 192 RL--TIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNI-PNLSRVVK 238 (312)
T ss_pred HC--CCCEEEECCCCCHHHHHHHHHHHCCCEEEECHHHHHC-CHHHHHHH
T ss_conf 48--9989970795999999999871489999965855309-77999861
No 34
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.57 E-value=3e-11 Score=95.66 Aligned_cols=291 Identities=16% Similarity=0.157 Sum_probs=163.5
Q ss_pred HHHHHHHHHHH-HHHHHHCC-CCCCCCCCEEEECCEECCCCEEECC-C----CCCCHH--HHHHHHHCCCCEEEC--CCC
Q ss_conf 78899999999-62011104-6788963116888733599748534-6----888677--988874036752410--200
Q gi|254780434|r 19 EIAHHLSIVAL-KSGLLSFF-PVHSDPRLNTKVAGISLSNPLGMAA-G----YDKNAE--VPIELLKLGFGFVEI--GTV 87 (362)
Q Consensus 19 e~ah~~~~~~~-~~~~~~~~-~~~~~~~L~~~~~Gl~~~nPiglAa-G----~dk~~~--~~~~l~~~G~G~v~~--kti 87 (362)
|.+.+-...++ +..+.|+. ...++++++|+++|.+++-||++|. | +..++| .-+...+.|.-++.- .|.
T Consensus 26 e~t~~~N~~af~~~~l~PrvL~dv~~~d~st~llG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~ 105 (361)
T cd04736 26 EKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNM 105 (361)
T ss_pred HHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 59999999999847576622358878997631588405785478763577660888429999999987987896799999
Q ss_pred CCCCC-CCCCCCCEEEEECCCCCEEECCCCCCC-HHHHHHHHHHHHHCCCCCCEEE----CCCC-------------CHH
Q ss_conf 13687-899886268842555410000247777-7889998764100012100011----0454-------------246
Q gi|254780434|r 88 TPHPQ-AGNPRPRVFRLTKDRAIINKLGFNNAG-YHTVFSRLSKIQPTSPIGINLG----ANKD-------------SKD 148 (362)
Q Consensus 88 t~~p~-~GNp~PR~~r~~~~~~iiN~~Gl~N~G-~~~~~~~l~~~~~~~pi~vsI~----~~~~-------------s~~ 148 (362)
+++.- +.-+.|+.|.+.- .++. .+.++++-++.... -+.+-+- ++.+ +..
T Consensus 106 s~EeVa~~~~g~~wfQLY~----------~~r~~~~~li~RA~~aG~~-alvlTvD~pv~G~Rerd~rngf~~P~~~~~~ 174 (361)
T cd04736 106 SIEDVARQADGDLWFQLYV----------VHRELAELLVKRALAAGYT-TLVLTTDVAVNGYRERDLRNGFAIPFRYTPR 174 (361)
T ss_pred CHHHHHHHCCCCEEEEEEE----------CCHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCHHHHCCCCCCCCCCHH
T ss_conf 9999986259984799887----------2879999999999985998-6899507888788835432256788655677
Q ss_pred HHHHHH----HHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--CCCCCCH
Q ss_conf 788776----5554206755269830333653221100002343211112244455655312688517865--0577774
Q gi|254780434|r 149 FILDYV----SGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK--ISPDLSE 222 (362)
Q Consensus 149 ~~~dy~----~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK--LsPd~~~ 222 (362)
...|.. -.++.+..... ---|+.-+...+.. .....+...+..-..+.+....+...+.|+++| ++|
T Consensus 175 ~~~~~~~~P~w~~~~~~~g~p-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~tW~di~wlr~~w~~plilKGI~~~---- 247 (361)
T cd04736 175 VLLDGILHPRWLLRFLRNGMP-QLANFASDDAIDVE--VQAALMSRQMDASFNWQDLRWLRDLWPHKLLVKGIVTA---- 247 (361)
T ss_pred HHHHHCCCCHHHHHHHHCCCC-CCCCCCCCCCCCCH--HHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCH----
T ss_conf 887751593889976502773-10234677777705--78899884368899999999999866997455214899----
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
Q ss_conf 88899999876449829998066555323457754463221135645424689999999740897489996788999999
Q gi|254780434|r 223 EELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDA 302 (362)
Q Consensus 223 ~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da 302 (362)
+=+..|.++|+|||+++|- ...+.-| .|.+++++.++++.++ .+|+=-|||.+|.|+
T Consensus 248 ----eDA~~A~~~G~dgIiVSNH----------GGRQLD~-------a~~~id~Lp~I~~av~--~~V~~DgGIRrG~DV 304 (361)
T cd04736 248 ----EDAKRCIELGADGVILSNH----------GGRQLDD-------AIAPIEALAEIVAATY--KPVLIDSGIRRGSDI 304 (361)
T ss_pred ----HHHHHHHHCCCCEEEECCC----------CCCCCCC-------CCCHHHHHHHHHHHHC--CEEEEECCCCCHHHH
T ss_conf ----9999998769999997588----------6333577-------7414777999999719--949994898878999
Q ss_pred HHHHHCCCCEEEECHHHHCC----CH----HHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99998399975452787706----97----89999999999999983899778961
Q gi|254780434|r 303 LDKIMAGANLIQLYSAMIYE----GI----SLPKRIIQGLSDFLNKENEVNFENIR 350 (362)
Q Consensus 303 ~e~l~aGAs~VQi~Tali~~----Gp----~~~~~I~~~L~~~l~~~G~~si~e~i 350 (362)
++.|..||++|.++..++|- |- .+++-+.+||..-|..-|+.||+|+-
T Consensus 305 ~KALALGA~aV~iGRp~lygLaa~G~~GV~~~l~iL~~El~~~M~l~G~~sv~el~ 360 (361)
T cd04736 305 VKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLT 360 (361)
T ss_pred HHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 99997799989877899998771109999999999999999999985899867769
No 35
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.51 E-value=1.2e-11 Score=98.40 Aligned_cols=258 Identities=22% Similarity=0.246 Sum_probs=151.5
Q ss_pred EEEECCEECCCCEEECCCC----CCC-------HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECC
Q ss_conf 1688873359974853468----886-------77988874036752410200136878998862688425554100002
Q gi|254780434|r 46 NTKVAGISLSNPLGMAAGY----DKN-------AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLG 114 (362)
Q Consensus 46 ~~~~~Gl~~~nPiglAaG~----dk~-------~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~G 114 (362)
+.++.+++++|.|+.|+=. +.+ ..++.+...-|+|.++++.+...|.. ...|+. +|
T Consensus 3 P~~ig~~~lkNRiv~apm~~~~a~~~G~pt~~~~~yy~~rA~gG~GLIite~~~v~~~~-~~~~~~------------~~ 69 (327)
T cd02803 3 PIKIGGLTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEG-KGYPGQ------------LG 69 (327)
T ss_pred CEEECCEEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEECHHH-CCCCCC------------CC
T ss_conf 83189999877368814185734589999999999999997499617998777876512-479997------------50
Q ss_pred CCCC----CHHHHHHHHHHHHHCCCCCCEEE---------------------C-----CC---CC----HHHHHHHHHHH
Q ss_conf 4777----77889998764100012100011---------------------0-----45---42----46788776555
Q gi|254780434|r 115 FNNA----GYHTVFSRLSKIQPTSPIGINLG---------------------A-----NK---DS----KDFILDYVSGI 157 (362)
Q Consensus 115 l~N~----G~~~~~~~l~~~~~~~pi~vsI~---------------------~-----~~---~s----~~~~~dy~~~~ 157 (362)
+-++ ++..+.+.+.+ .+..+++.++ . .. -| ++.+++|...+
T Consensus 70 i~~d~~i~~~k~l~~~vh~--~G~~i~~QL~H~Gr~~~~~~~~~~~~~~s~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA 147 (327)
T cd02803 70 IYDDEQIPGLRKLTEAVHA--HGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAA 147 (327)
T ss_pred CCCHHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 3623547888799887632--79879987202765567444689988877544456898886299999999999999999
Q ss_pred HHHC-CCCCEEEEECC---------CCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-----
Q ss_conf 4206-75526983033---------365--322110000234321111224445565531268851786505777-----
Q gi|254780434|r 158 RLFF-TIASYFTINIS---------SPN--TPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDL----- 220 (362)
Q Consensus 158 ~~~~-~~aD~iEiNiS---------CPN--t~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~----- 220 (362)
+.+. .+.|.+||.-. ||. ...-+...+.++=.+++..+.+.... ....+.||.+||+|+-
T Consensus 148 ~~A~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtD~YGGs~eNR~Rf~~eii~air~---~vg~df~vgvRls~~d~~~~g 224 (327)
T cd02803 148 RRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVRE---AVGPDFPVGVRLSADDFVPGG 224 (327)
T ss_pred HHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HCCCCCCEEEEECHHHCCCCC
T ss_conf 99998499989983576618887217546987777888989998999999999999---739887617997702126899
Q ss_pred -CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCH
Q ss_conf -7488899999876449829998066555323457754463221135645424689999999740897489996788999
Q gi|254780434|r 221 -SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISST 299 (362)
Q Consensus 221 -~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~ 299 (362)
+.++..++++.+++.|+|-|.++--.......... ....++ ..-+.....+++.+ ++|+|++|+|.++
T Consensus 225 ~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~------~~~~~~---~~~~~~~~~ik~~~--~~pvi~~G~i~~~ 293 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIP------PPYVPE---GYFLELAEKIKKAV--KIPVIAVGGIRDP 293 (327)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC------CCCCCC---CCCHHHHHHHHHHC--CCCEEEECCCCCH
T ss_conf 998999999999985599989977784566754467------877775---22389999999976--9819998998999
Q ss_pred HHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHH
Q ss_conf 9999999839-997545278770697899999999
Q gi|254780434|r 300 KDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQG 333 (362)
Q Consensus 300 ~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~ 333 (362)
+++.+.|..| ||+|.++.+++.+ |.+++++.+|
T Consensus 294 ~~a~~~l~~g~~D~V~~gR~~iad-Pd~~~k~~~G 327 (327)
T cd02803 294 EVAEEILAEGKADLVALGRALLAD-PDLPNKAREG 327 (327)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHC-CCHHHHHHCC
T ss_conf 999999988993125866999979-1499999775
No 36
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.50 E-value=6.9e-12 Score=99.93 Aligned_cols=257 Identities=17% Similarity=0.159 Sum_probs=148.8
Q ss_pred EEEECCEECCCCEEECC--------CCCC--CHHHHHHHHHCCCCEEECCCCCCCCCC-CCCC-CCEEEEECCCCCEEEC
Q ss_conf 16888733599748534--------6888--677988874036752410200136878-9988-6268842555410000
Q gi|254780434|r 46 NTKVAGISLSNPLGMAA--------GYDK--NAEVPIELLKLGFGFVEIGTVTPHPQA-GNPR-PRVFRLTKDRAIINKL 113 (362)
Q Consensus 46 ~~~~~Gl~~~nPiglAa--------G~dk--~~~~~~~l~~~G~G~v~~ktit~~p~~-GNp~-PR~~r~~~~~~iiN~~ 113 (362)
+.++.+++++|.|+.|+ |... ..+++.+...-|+|.++++.+...|.- ++|. |.++. ++ .+
T Consensus 4 Pi~ig~~~l~NRiv~apm~~~~~~dG~pt~~~~~yy~~rA~gG~GlIite~~~V~~~g~~~~~~~gi~~---d~-~i--- 76 (336)
T cd02932 4 PLTLRGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWN---DE-QI--- 76 (336)
T ss_pred CEEECCEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCEEECCCCCCCCCCCCCCH---HH-HH---
T ss_conf 825899988885286875768188998999999999999759973899745586612056998656567---99-99---
Q ss_pred CCCCCCHHHHHHHHHHHH--------------------------------HCCCCCCEEECCC--------CC----HHH
Q ss_conf 247777788999876410--------------------------------0012100011045--------42----467
Q gi|254780434|r 114 GFNNAGYHTVFSRLSKIQ--------------------------------PTSPIGINLGANK--------DS----KDF 149 (362)
Q Consensus 114 Gl~N~G~~~~~~~l~~~~--------------------------------~~~pi~vsI~~~~--------~s----~~~ 149 (362)
+|+..+.+.+.+.. ...++..|-.... -| ++.
T Consensus 77 ----~~~~~l~~avh~~G~~i~~QL~H~Gr~a~~~~~~~~~~~~~~~~~~~~~~~apS~v~~~~~~~~pr~mt~~eI~~i 152 (336)
T cd02932 77 ----EALKRIVDFIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELTREEIAEV 152 (336)
T ss_pred ----HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf ----9999999999866987998622466432345753356777764357985057887766779998856899999999
Q ss_pred HHHHHHHHHHHC-CCCCEEEEEC---------CCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 887765554206-7552698303---------33653--22110000234321111224445565531268851786505
Q gi|254780434|r 150 ILDYVSGIRLFF-TIASYFTINI---------SSPNT--PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKIS 217 (362)
Q Consensus 150 ~~dy~~~~~~~~-~~aD~iEiNi---------SCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLs 217 (362)
+++|...++.+. .+.|.+||.- -||.+ ..-+...+.++=.+++..+.+.... ....+.||.+|||
T Consensus 153 i~~f~~AA~rA~~AGfDGVEIH~ahGYLl~qFLsp~~N~RtDeYGGs~enR~Rf~~Eii~aVr~---~vg~d~~vgvRis 229 (336)
T cd02932 153 VDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRA---VWPEDKPLFVRIS 229 (336)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCEEEEEC
T ss_conf 9999999999998399999863137479998369411677786799789998899999999999---8399887068964
Q ss_pred CC------CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 77------774888999998764498299980665553234577544632211356454246899999997408974899
Q gi|254780434|r 218 PD------LSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAII 291 (362)
Q Consensus 218 Pd------~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~II 291 (362)
++ .+.++..++++.+++.|+|.|.++-- .... ...... ++. .-+...+.+++.+ ++|+|
T Consensus 230 ~~d~~~~g~~~~e~~~~a~~l~~~gvd~i~vs~G--~~~~--~~~~~~------~~~---~~~~~a~~ik~~~--~ipvi 294 (336)
T cd02932 230 ATDWVEGGWDLEDSVELAKALKELGVDLIDVSSG--GNSP--AQKIPV------GPG---YQVPFAERIRQEA--GIPVI 294 (336)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC--CCCC--CCCCCC------CCC---CCHHHHHHHHHHC--CCCEE
T ss_conf 5235789989999999999999759978995589--8776--666777------864---2679999999878--98399
Q ss_pred EECCCCCHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHH
Q ss_conf 967889999999999839-99754527877069789999999
Q gi|254780434|r 292 GTGGISSTKDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQ 332 (362)
Q Consensus 292 g~GGI~s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~ 332 (362)
++|||.+++++.+.|..| ||+|.++.+++-+ |.++++...
T Consensus 295 ~~G~i~~p~~ae~~l~~G~~DlV~~gR~~iad-Pdlp~kaAa 335 (336)
T cd02932 295 AVGLITDPEQAEAILESGRADLVALGRELLRN-PYWPLHAAA 335 (336)
T ss_pred EECCCCCHHHHHHHHHCCCCEEHHHHHHHHHC-CCHHHHHHC
T ss_conf 97998999999999987994006867999979-339999867
No 37
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.49 E-value=8.9e-12 Score=99.17 Aligned_cols=258 Identities=16% Similarity=0.141 Sum_probs=152.9
Q ss_pred EEEECCEECCCCEEECCC----C-CCCH-------HHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEEC
Q ss_conf 168887335997485346----8-8867-------798887403675241020013687899886268842555410000
Q gi|254780434|r 46 NTKVAGISLSNPLGMAAG----Y-DKNA-------EVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKL 113 (362)
Q Consensus 46 ~~~~~Gl~~~nPiglAaG----~-dk~~-------~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~ 113 (362)
+.++.+++++|.|+.|+= . +.++ +++.+...-|+|.++++.+...|. |...|+. +
T Consensus 6 P~~ig~l~lkNRiv~aPm~~~~~~~~dG~~t~~~~~yy~~rA~GG~GlIi~e~~~V~~~-g~~~~~~------------~ 72 (337)
T PRK13523 6 PYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLIIVEATAVTPE-GRISDKD------------L 72 (337)
T ss_pred CCEECCEEECCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEECCC-CCCCCCC------------C
T ss_conf 70289999778617066688656688999999999999999768972999835886622-1479987------------5
Q ss_pred CCCC----CCHHHHHHHHHHHH----------------HCCCCCCEEECCC--------CC----HHHHHHHHHHHHHHC
Q ss_conf 2477----77788999876410----------------0012100011045--------42----467887765554206
Q gi|254780434|r 114 GFNN----AGYHTVFSRLSKIQ----------------PTSPIGINLGANK--------DS----KDFILDYVSGIRLFF 161 (362)
Q Consensus 114 Gl~N----~G~~~~~~~l~~~~----------------~~~pi~vsI~~~~--------~s----~~~~~dy~~~~~~~~ 161 (362)
|+-+ +|+..+.+.+.+.. ...|+..|-.... -| ++-+++|.+.++.+.
T Consensus 73 ~i~~d~~i~~~~~l~~avh~~G~~i~~QL~H~Gr~~~~~~~~~aPS~i~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~ 152 (337)
T PRK13523 73 GIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAKRAK 152 (337)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 56627789999999999975588688750017755678998107778867889998864999999999999999999999
Q ss_pred -CCCCEEEEE---------CCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC------CHH
Q ss_conf -755269830---------3336--5322110000234321111224445565531268851786505777------748
Q gi|254780434|r 162 -TIASYFTIN---------ISSP--NTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDL------SEE 223 (362)
Q Consensus 162 -~~aD~iEiN---------iSCP--Nt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~------~~~ 223 (362)
.+.|.+||. +-+| |-..-+...+.++-.+++..+.+.... ...-|+++|||++- +.+
T Consensus 153 ~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~YGGs~eNR~Rf~lEii~aVr~-----~~~~~v~vRis~~d~~~gG~~~~ 227 (337)
T PRK13523 153 EAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKE-----VWDGPLFVRISASDYHPDGLTVQ 227 (337)
T ss_pred HCCCCEEEEECCCCHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH-----HCCCCEEEEECCCCCCCCCCCHH
T ss_conf 8499989981354358998479232489585588889998899999999998-----65886399933655578998989
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH
Q ss_conf 88999998764498299980665553234577544632211356454246899999997408974899967889999999
Q gi|254780434|r 224 ELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDAL 303 (362)
Q Consensus 224 ~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~ 303 (362)
+..++++.+++.|+|.+-++.-.. . +......-|+ .+.....+++.+ ++|+|++|+|.++++|.
T Consensus 228 d~~~~~~~l~~~GvD~i~vs~G~~--~----~~~~~~~~g~--------~~~~a~~ik~~~--~ipvi~vG~i~~~~~ae 291 (337)
T PRK13523 228 DYVQYAKWMKEQGVDLIDVSSGAV--V----PARIDVYPGY--------QVPFAEHIKEHA--NIATGAVGLITTGAQAE 291 (337)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCC--C----CCCCCCCCCC--------CHHHHHHHHHHC--CCCEEEECCCCCHHHHH
T ss_conf 999999999974999899578855--4----7767778753--------348999999876--97099983869999999
Q ss_pred HHHHCC-CCEEEECHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 999839-99754527877069789999999999999
Q gi|254780434|r 304 DKIMAG-ANLIQLYSAMIYEGISLPKRIIQGLSDFL 338 (362)
Q Consensus 304 e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~L~~~l 338 (362)
+.|..| ||+|.++.+++-. |.+++++.+++..-.
T Consensus 292 ~~l~~G~aD~V~~gR~~iad-Pd~p~kaa~~~~~ei 326 (337)
T PRK13523 292 EILNNNRADLIFIGRELLRN-PYFPRIAANELGFEI 326 (337)
T ss_pred HHHHCCCCCHHHHHHHHHHC-CCHHHHHHHHCCCCC
T ss_conf 99987994799989999989-109999997669999
No 38
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=99.48 E-value=7.9e-12 Score=99.52 Aligned_cols=270 Identities=24% Similarity=0.280 Sum_probs=157.3
Q ss_pred HCCCCCCCCCCEEEECCEECCCCEEECCC-C----CCCHHHHHHHH-H-CC--CCEEECCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 10467889631168887335997485346-8----88677988874-0-36--752410200136878998862688425
Q gi|254780434|r 35 SFFPVHSDPRLNTKVAGISLSNPLGMAAG-Y----DKNAEVPIELL-K-LG--FGFVEIGTVTPHPQAGNPRPRVFRLTK 105 (362)
Q Consensus 35 ~~~~~~~~~~L~~~~~Gl~~~nPiglAaG-~----dk~~~~~~~l~-~-~G--~G~v~~ktit~~p~~GNp~PR~~r~~~ 105 (362)
..++..++.||+++++|.+++-||++++= . ...++.+.+-. . +| +-...++|.+.+.-.
T Consensus 44 ~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~------------ 111 (360)
T COG1304 44 RVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGSQRIEEVA------------ 111 (360)
T ss_pred CCCCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH------------
T ss_conf 45788665765157558602588788044455535735699999999980887010032557299952------------
Q ss_pred CCCCEEECCCCCCCHHHHHHHHHHHHHCCC-CCCEEECCC-----CCHHHHHHHHHHHHHHCCCCCE--EEEEC----CC
Q ss_conf 554100002477777889998764100012-100011045-----4246788776555420675526--98303----33
Q gi|254780434|r 106 DRAIINKLGFNNAGYHTVFSRLSKIQPTSP-IGINLGANK-----DSKDFILDYVSGIRLFFTIASY--FTINI----SS 173 (362)
Q Consensus 106 ~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~p-i~vsI~~~~-----~s~~~~~dy~~~~~~~~~~aD~--iEiNi----SC 173 (362)
.+++...+....+...++.+ ...|+|+.. ++....+...+..+.+. +|+ .-.|+ ..
T Consensus 112 ----------~~~~~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~~~i~--a~~~~~h~n~~qe~~~ 179 (360)
T COG1304 112 ----------AAPPFQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGIS--APALAIHLNVLQEATQ 179 (360)
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCHHHHHCC
T ss_conf ----------1715455659877764999999996698403631575426788999985347--7720133547787348
Q ss_pred CCCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 65322110000-----2343211112244455655312688517865-05777748889999987644982999806655
Q gi|254780434|r 174 PNTPGLRSLQK-----KKNLERLLIHVMQTREEEKIKTGKFVPIFLK-ISPDLSEEELDDIAVEVLSHKVEGIIVSNTTL 247 (362)
Q Consensus 174 PNt~g~~~~~~-----~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK-LsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~ 247 (362)
|- |.+.++. .+.......++..+......+.....|+.+| +. + -.+ +..+.+.|+++|++.|.-.
T Consensus 180 p~--g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~---~---~~D-~~~a~~tg~~~I~vsnhgg 250 (360)
T COG1304 180 PE--GDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGIL---A---PED-AAGAGGTGADGIEVSNHGG 250 (360)
T ss_pred CC--CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHCCC---C---HHH-HHHHCCCCCEEEEEECCCC
T ss_conf 76--6656530045899999843787333777767877507758774789---7---888-8763368822899976787
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC----CC
Q ss_conf 53234577544632211356454246899999997408974899967889999999999839997545278770----69
Q gi|254780434|r 248 SRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY----EG 323 (362)
Q Consensus 248 ~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~----~G 323 (362)
...-||.| +.+.+.++++.++++++||+.|||.+|.|+++.|..||++|.++-.++| .|
T Consensus 251 ----------rqlD~g~s-------t~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g 313 (360)
T COG1304 251 ----------RQLDWGIS-------TADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGG 313 (360)
T ss_pred ----------CCCCCCCC-------HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf ----------40257877-------6999999999718871799638878778999999937765452599999998556
Q ss_pred H----HHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
Q ss_conf 7----899999999999999838997789616975
Q gi|254780434|r 324 I----SLPKRIIQGLSDFLNKENEVNFENIRGSYT 354 (362)
Q Consensus 324 p----~~~~~I~~~L~~~l~~~G~~si~e~iG~~~ 354 (362)
- .++.-|.+||+.-|.--|.+||+|+....+
T Consensus 314 ~~GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l 348 (360)
T COG1304 314 EAGVERVLEIIRKELKIAMALTGAKNIEELKRVPL 348 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCE
T ss_conf 87899999999999999997428881999655736
No 39
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.47 E-value=2.1e-11 Score=96.71 Aligned_cols=263 Identities=20% Similarity=0.226 Sum_probs=150.9
Q ss_pred EEEEC-CEECCCCEEECCC----CCCCH-------HHHHHHHHCCCCEEECCCCCCCCC-CCCCCCCEEEEECCCCCEEE
Q ss_conf 16888-7335997485346----88867-------798887403675241020013687-89988626884255541000
Q gi|254780434|r 46 NTKVA-GISLSNPLGMAAG----YDKNA-------EVPIELLKLGFGFVEIGTVTPHPQ-AGNPRPRVFRLTKDRAIINK 112 (362)
Q Consensus 46 ~~~~~-Gl~~~nPiglAaG----~dk~~-------~~~~~l~~~G~G~v~~ktit~~p~-~GNp~PR~~r~~~~~~iiN~ 112 (362)
+.++. |++|+|.|+.|+= .+.++ ++..+...-|+|.++++.+...|+ .+.| +-.+.
T Consensus 4 P~~l~ng~tlkNRiv~apm~~~~~~~dG~~t~~~~~yy~~rA~gG~glIit~~~~v~~~~~~~~-----------~~~~~ 72 (338)
T cd04733 4 PLTLPNGATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEP-----------GIIGN 72 (338)
T ss_pred CEECCCCCEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCC-----------CCCCC
T ss_conf 9889999598684688988887457999899999999998862783488970389867767799-----------98888
Q ss_pred CCCCCC----CHHHHHHHHHHHHHCCCCCCEEE--------------------C---------C--C-CC----HHHHHH
Q ss_conf 024777----77889998764100012100011--------------------0---------4--5-42----467887
Q gi|254780434|r 113 LGFNNA----GYHTVFSRLSKIQPTSPIGINLG--------------------A---------N--K-DS----KDFILD 152 (362)
Q Consensus 113 ~Gl~N~----G~~~~~~~l~~~~~~~pi~vsI~--------------------~---------~--~-~s----~~~~~d 152 (362)
+++.++ ++..+.+.+.+. +..+++.++ . . + -| ++.+++
T Consensus 73 ~~~~~d~~i~~~k~l~d~vh~~--g~~i~~QL~H~Gr~~~~~~~~~~~~~s~~~~~~~~~~~~~~p~~mt~~eI~~ii~~ 150 (338)
T cd04733 73 VVLESGEDLEAFREWAAAAKAN--GALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDR 150 (338)
T ss_pred CCCCCHHHHHHHHHHHHHHHHC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 8879999999999999999856--98699951565412450007898887655676655557898864899999999999
Q ss_pred HHHHHHHHC-CCCCEEEEEC---------CCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-
Q ss_conf 765554206-7552698303---------33653--2211000023432111122444556553126885178650577-
Q gi|254780434|r 153 YVSGIRLFF-TIASYFTINI---------SSPNT--PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPD- 219 (362)
Q Consensus 153 y~~~~~~~~-~~aD~iEiNi---------SCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd- 219 (362)
|.+.++.+. .+.|.+||.- -+|.+ ..-+...+.++=.+++..+.+.... ......||.+|||++
T Consensus 151 f~~AA~rA~~AGfDgVEiH~ahGYLl~qFlS~~~N~RtDeYGGS~ENR~Rf~lEii~avr~---~vg~d~~v~~Ris~~d 227 (338)
T cd04733 151 FAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRA---AVGPGFPVGIKLNSAD 227 (338)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCEEEEEECHHH
T ss_conf 9999999998399989982365548998629876899685798988998899999999999---7199886999845354
Q ss_pred -----CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf -----774888999998764498299980665553234577544632211356454246899999997408974899967
Q gi|254780434|r 220 -----LSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG 294 (362)
Q Consensus 220 -----~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G 294 (362)
.+.++..++++.+++.|+|.+.++.....-+........ +...-...-+.....+++.+ ++|+|++|
T Consensus 228 ~~~~G~~~~d~~~~~~~l~~~GvD~i~vs~G~~~~~~~~~~~~~------~~~~~~~~~~~~a~~ik~~~--~~Pvi~~G 299 (338)
T cd04733 228 FQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKE------STIAREAYFLEFAEKIRKVT--KTPLMVTG 299 (338)
T ss_pred HCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC------CCCCCCCCHHHHHHHHHHHC--CCCEEEEC
T ss_conf 24799998999999999987699889946885457322477654------44567510599999999984--99799989
Q ss_pred CCCCHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHH
Q ss_conf 889999999999839-997545278770697899999999
Q gi|254780434|r 295 GISSTKDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQG 333 (362)
Q Consensus 295 GI~s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~ 333 (362)
||.+.++|.+.+..| ||+|.++.+++-+ |.+++++.+|
T Consensus 300 ~i~~~~~ae~~l~~g~~DlV~~gR~~iad-Pdl~~k~~~G 338 (338)
T cd04733 300 GFRTRAAMEQALASGAVDGIGLARPLALE-PDLPNKLLAG 338 (338)
T ss_pred CCCCHHHHHHHHHCCCCEEHHHHHHHHHC-CCHHHHHHCC
T ss_conf 98999999999987995108988999979-0599998675
No 40
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.47 E-value=3.1e-12 Score=102.27 Aligned_cols=215 Identities=16% Similarity=0.263 Sum_probs=129.1
Q ss_pred CEEEC--CCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEE--CC-CCCCCHHHHHHHHHHHH
Q ss_conf 74853--468886779888740367524102001368789988626884255541000--02-47777788999876410
Q gi|254780434|r 57 PLGMA--AGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINK--LG-FNNAGYHTVFSRLSKIQ 131 (362)
Q Consensus 57 PiglA--aG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~--~G-l~N~G~~~~~~~l~~~~ 131 (362)
||.|| ||.. |.- +.+...-.||..+++.......+ ......+..+ -- +.+...+.+..++....
T Consensus 1 PvvLAPMAGVT-D~p-Frr~~~~~~g~~~~gg~~~~~~~---------~~~~~~~~~~~~ke~~~~~~~~~~~~~~~~~~ 69 (233)
T cd02911 1 PVALASMAGIT-DGD-FCRKRADHAGLVFLGGYNLDERT---------IEAARKLVKRGRKEFLPDDPLEFIEGEIKALK 69 (233)
T ss_pred CEEEECCCCCC-CHH-HHHHHHHHCCCEEEECCCCHHHH---------HHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHC
T ss_conf 94885789995-899-99999983795797212201899---------99999999717232123451013367887622
Q ss_pred -HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC------CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf -00121000110454246788776555420675526983033365------32211000023432111122444556553
Q gi|254780434|r 132 -PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPN------TPGLRSLQKKKNLERLLIHVMQTREEEKI 204 (362)
Q Consensus 132 -~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPN------t~g~~~~~~~~~l~~~l~~v~~~~~~~~~ 204 (362)
...|+++.|.++. .+ ...+.++.+.+.+|.++||..||- ..|--.+.+++.+.+++.+++.
T Consensus 70 ~~~~pv~vQi~g~~--~e---~~~~Aa~~~~~~~d~IDiN~GCP~~kV~~~g~GsaLl~dp~~~~~iv~avk~------- 137 (233)
T cd02911 70 DSNVLVGVNVRSSS--LE---PLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE------- 137 (233)
T ss_pred CCCCCEEEEEECCC--HH---HHHHHHHHHHCCCCEEEEECCCCCHHHCCCCCHHHHCCCHHHHHHHHHHHHH-------
T ss_conf 46897189930699--99---9999999974369999997999928983797537773898999999999985-------
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 12688517865057777488899999876449829998066555323457754463221135645424689999999740
Q gi|254780434|r 205 KTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRV 284 (362)
Q Consensus 205 ~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~ 284 (362)
.++|+.||+--..+. +..++++.++++|++++++- + ..+| |. .-...|+++
T Consensus 138 ---~~~PVtvKiR~G~d~-~~~~~a~~~e~aG~~~l~v~-~-------------~~~~---~~----ad~~~I~~~---- 188 (233)
T cd02911 138 ---TGVPVSVKIRAGVDV-DDEELARLIEKAGADIIHVD-A-------------MDPG---NH----ADLKKIRDI---- 188 (233)
T ss_pred ---HCCCEEEEEECCCCC-CHHHHHHHHHHHCCCEEEEE-C-------------CCCC---CH----HHHHHHHHH----
T ss_conf ---389842798569998-88999999998396079943-2-------------0778---50----899999986----
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 897489996788999999999983999754527877069
Q gi|254780434|r 285 GPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEG 323 (362)
Q Consensus 285 ~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~G 323 (362)
..++||||.|+|.|.+||.+++..|||.|+|+.+.+-+-
T Consensus 189 ~~~i~VigNGDI~s~eda~~~~~~G~DgVMIgRgAL~n~ 227 (233)
T cd02911 189 STELFIIGNNSVTTIESAKEMFSYGADMVSVARASLPEN 227 (233)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCEEEECHHHCCCC
T ss_conf 379879980896999999999985999999738755685
No 41
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.46 E-value=3e-11 Score=95.60 Aligned_cols=261 Identities=18% Similarity=0.179 Sum_probs=151.5
Q ss_pred EEEECCEECCCCEEECCC---CCCC-------HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCC
Q ss_conf 168887335997485346---8886-------779888740367524102001368789988626884255541000024
Q gi|254780434|r 46 NTKVAGISLSNPLGMAAG---YDKN-------AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGF 115 (362)
Q Consensus 46 ~~~~~Gl~~~nPiglAaG---~dk~-------~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl 115 (362)
+.++.+++++|.|+.++= ++.+ .+++.+...-|+|.++++.+...|. |.+.|+. +|+
T Consensus 4 Pikig~~~lkNRiv~~pm~~~~~~~G~~~~~~~~~y~~rA~gG~GlIi~~~~~v~~~-~~~~~~~------------~~i 70 (343)
T cd04734 4 PLQLGHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPS-DSPAFGN------------LNA 70 (343)
T ss_pred CEEECCEEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCC-CCCCCCC------------CCC
T ss_conf 804899998883254546788688998999999999999678983799700676465-5689998------------766
Q ss_pred CC----CCHHHHHHHHHHHHHCCCCCCEEE---------------------CC--------CCC----HHHHHHHHHHHH
Q ss_conf 77----777889998764100012100011---------------------04--------542----467887765554
Q gi|254780434|r 116 NN----AGYHTVFSRLSKIQPTSPIGINLG---------------------AN--------KDS----KDFILDYVSGIR 158 (362)
Q Consensus 116 ~N----~G~~~~~~~l~~~~~~~pi~vsI~---------------------~~--------~~s----~~~~~dy~~~~~ 158 (362)
-+ +++..+.+.+.+. +..+++.++ .+ .-| ++.++||...++
T Consensus 71 ~~d~~i~~~k~l~~~vH~~--G~~i~~QL~H~Gr~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~eeI~~ii~~f~~AA~ 148 (343)
T cd04734 71 SDDEIIPGFRRLAEAVHAH--GAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAAR 148 (343)
T ss_pred CCHHHHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999735--88189871157766676679986268888866567987944899999999999999999
Q ss_pred HHC-CCCCEEEEE---------CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC------
Q ss_conf 206-755269830---------333653--22110000234321111224445565531268851786505777------
Q gi|254780434|r 159 LFF-TIASYFTIN---------ISSPNT--PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDL------ 220 (362)
Q Consensus 159 ~~~-~~aD~iEiN---------iSCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~------ 220 (362)
.+. .+.|.+||. +-||-+ ..-+...+-++=.+++..+.+.... ....+.||.+|+||+-
T Consensus 149 ~A~~AGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~EIi~~Ir~---~vg~~f~i~~Ris~~~~~~~g~ 225 (343)
T cd04734 149 RCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRA---AVGPDFIVGIRISGDEDTEGGL 225 (343)
T ss_pred HHHHCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCC
T ss_conf 9997399889844577746998469855899676798889998999999999999---8198776158867623568989
Q ss_pred CHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCH
Q ss_conf 7488899999876449-829998066555323457754463221135645424689999999740897489996788999
Q gi|254780434|r 221 SEEELDDIAVEVLSHK-VEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISST 299 (362)
Q Consensus 221 ~~~~i~~ia~~a~~~g-~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~ 299 (362)
+.++..++++.+++.| +|-+-++--........... ...+.-+ ...-+....++++.+ ++|+|++|||.+.
T Consensus 226 ~~~e~~~~~~~l~~~G~vD~l~vs~g~~~~~~~~~~~----~p~~~~~--~g~~~~~a~~ik~~~--~~pvi~~G~i~~~ 297 (343)
T cd04734 226 SPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHV----VPSMGMP--PGPFLPLAARIKQAV--DLPVFHAGRIRDP 297 (343)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHC----CCCCCCC--CCCCHHHHHHHHHHC--CCCEEEECCCCCH
T ss_conf 9899999999999669976899656754332221100----6876677--643488999999972--9859997998999
Q ss_pred HHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHH
Q ss_conf 9999999839-997545278770697899999999
Q gi|254780434|r 300 KDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQG 333 (362)
Q Consensus 300 ~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~ 333 (362)
+++.+.+..| +|+|.++..++.+ |.+++++.++
T Consensus 298 ~~ae~~l~~g~~D~V~~gR~~lad-Pd~v~k~~~G 331 (343)
T cd04734 298 AEAEQALAAGHADMVGMTRAHIAD-PHLVAKAREG 331 (343)
T ss_pred HHHHHHHHCCCCEEHHHHHHHHHC-CCHHHHHHCC
T ss_conf 999999987996216978999978-1199999768
No 42
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.46 E-value=2.2e-11 Score=96.47 Aligned_cols=263 Identities=16% Similarity=0.110 Sum_probs=154.0
Q ss_pred EEEECCEECCCCEEECCC---CC---C----CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCC
Q ss_conf 168887335997485346---88---8----6779888740367524102001368789988626884255541000024
Q gi|254780434|r 46 NTKVAGISLSNPLGMAAG---YD---K----NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGF 115 (362)
Q Consensus 46 ~~~~~Gl~~~nPiglAaG---~d---k----~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl 115 (362)
+.++.+++++|.|+.|+= +. . ..++..+...-|+|.++++.+...+ .|...|+..++..++ .+
T Consensus 4 P~kig~~~lkNRiv~apm~~~~~~~~~~~~~~~~yy~~rA~gG~glIi~e~~~v~~-~g~~~~~~~~i~~d~-~i----- 76 (353)
T cd02930 4 PLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNE-AGKLGPGGPVLNSPR-QA----- 76 (353)
T ss_pred CCEECCEEECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECC-CCCCCCCCCCCCCHH-HH-----
T ss_conf 83289999788678557463436799786999999999976786348976289880-417699976327999-99-----
Q ss_pred CCCCHHHHHHHHHHHH---------------HCCCCCCEEECCC--------CC----HHHHHHHHHHHHHHC-CCCCEE
Q ss_conf 7777788999876410---------------0012100011045--------42----467887765554206-755269
Q gi|254780434|r 116 NNAGYHTVFSRLSKIQ---------------PTSPIGINLGANK--------DS----KDFILDYVSGIRLFF-TIASYF 167 (362)
Q Consensus 116 ~N~G~~~~~~~l~~~~---------------~~~pi~vsI~~~~--------~s----~~~~~dy~~~~~~~~-~~aD~i 167 (362)
+|+..+.+.+.++. ...++..|-..+. -| ++.+++|.+.++.+. .+.|.+
T Consensus 77 --~~~k~l~~~vH~~G~~i~~QL~H~Gr~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfDgV 154 (353)
T cd02930 77 --AGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGV 154 (353)
T ss_pred --HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf --999999999997699799973147866689888189877788899988659999999999999999999998299989
Q ss_pred EEE---------CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC------CCHHHHHHHHH
Q ss_conf 830---------333653--2211000023432111122444556553126885178650577------77488899999
Q gi|254780434|r 168 TIN---------ISSPNT--PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPD------LSEEELDDIAV 230 (362)
Q Consensus 168 EiN---------iSCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd------~~~~~i~~ia~ 230 (362)
||. +-+|.+ ..-+...+.++=.+++..+.+.... ......||.+|++++ .+.++..++++
T Consensus 155 EIH~ahGyLl~qFLSp~~N~RtDeYGGs~eNR~Rf~~Eiv~aVr~---~vg~d~~v~~Ris~~d~~~~G~~~~e~~~~~~ 231 (353)
T cd02930 155 EIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRA---AVGEDFIIIYRLSMLDLVEGGSTWEEVVALAK 231 (353)
T ss_pred EECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 962567614877338754788574579878887999999999999---70998749997360126899989999999999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCC-
Q ss_conf 8764498299980665553234577544632211356454246899999997408974899967889999999999839-
Q gi|254780434|r 231 EVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAG- 309 (362)
Q Consensus 231 ~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aG- 309 (362)
.+++.|+|-+.++-- ... ...+... .+-+ ...-....+.+++.+ ++|+|.+|||.+++.+.+.|..|
T Consensus 232 ~l~~~GvD~i~vs~G--~~~-~~~~~~~-----~~~p--~g~~~~~a~~ir~~~--~~Pvi~~G~i~~p~~ae~~l~~g~ 299 (353)
T cd02930 232 ALEAAGADILNTGIG--WHE-ARVPTIA-----TSVP--RGAFAWATAKLKRAV--DIPVIASNRINTPEVAERLLADGD 299 (353)
T ss_pred HHHHCCCCEEEECCC--CCC-CCCCCCC-----CCCC--CHHHHHHHHHHHHHC--CCCEEECCCCCCHHHHHHHHHCCC
T ss_conf 999819999996377--444-6687533-----4577--236699999988754--834896599798999999998799
Q ss_pred CCEEEECHHHHCCCHHHHHHHHHH
Q ss_conf 997545278770697899999999
Q gi|254780434|r 310 ANLIQLYSAMIYEGISLPKRIIQG 333 (362)
Q Consensus 310 As~VQi~Tali~~Gp~~~~~I~~~ 333 (362)
||+|.++.+++.+ |.+++++.+|
T Consensus 300 aD~V~~gR~liad-Pdl~~K~~~G 322 (353)
T cd02930 300 ADMVSMARPFLAD-PDFVAKAAAG 322 (353)
T ss_pred CCHHHHHHHHHHC-CHHHHHHHCC
T ss_conf 6247840998769-3699999818
No 43
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.42 E-value=5.8e-11 Score=93.70 Aligned_cols=259 Identities=16% Similarity=0.202 Sum_probs=145.6
Q ss_pred EEEEC-CEECCCCEEECCC---C-CCCH-------HHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEEC
Q ss_conf 16888-7335997485346---8-8867-------798887403675241020013687899886268842555410000
Q gi|254780434|r 46 NTKVA-GISLSNPLGMAAG---Y-DKNA-------EVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKL 113 (362)
Q Consensus 46 ~~~~~-Gl~~~nPiglAaG---~-dk~~-------~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~ 113 (362)
+.++. |++++|.|+.|+= . +.++ ++..+.. -|+|.++++.+...|. |-..|. ..
T Consensus 4 P~~igngl~lkNRiv~apm~~~~a~~dG~~t~~~~~yy~~rA-gG~GliIte~~~V~~~-g~~~~~------------~~ 69 (353)
T cd04735 4 PFTLKNGVTLKNRFVMAPMTTYSSNPDGTITDDELAYYQRRA-GGVGMVITGATYVSPS-GIGFEG------------GF 69 (353)
T ss_pred CEECCCCCEECCCEEEHHHCCCCCCCCCCCCHHHHHHHHHHH-CCCEEEEECCEEECCC-CCCCCC------------CC
T ss_conf 877799969518776600038664679999999999999983-9614999894888613-257899------------87
Q ss_pred CCCCC----CHHHHHHHHHHH-------------------HH-CCCCCCEEECC--------C-CCH----HHHHHHHHH
Q ss_conf 24777----778899987641-------------------00-01210001104--------5-424----678877655
Q gi|254780434|r 114 GFNNA----GYHTVFSRLSKI-------------------QP-TSPIGINLGAN--------K-DSK----DFILDYVSG 156 (362)
Q Consensus 114 Gl~N~----G~~~~~~~l~~~-------------------~~-~~pi~vsI~~~--------~-~s~----~~~~dy~~~ 156 (362)
|+-++ |+..+.+.+.+. .. ..|++.|-... + -|. +-+++|.+.
T Consensus 70 ~i~~d~~i~~~k~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~pS~~~~~~~~~~~p~~mt~~eI~~ii~~f~~A 149 (353)
T cd04735 70 SADDDSDIPGLRKLAQAIKSKGAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEA 149 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 64799999999999999985799189751136654661007899865777757677899988619999999999999999
Q ss_pred HHHHC-CCCCEEEEE---------CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHH-HHCCCCCEEEEECCCC----
Q ss_conf 54206-755269830---------333653--221100002343211112244455655-3126885178650577----
Q gi|254780434|r 157 IRLFF-TIASYFTIN---------ISSPNT--PGLRSLQKKKNLERLLIHVMQTREEEK-IKTGKFVPIFLKISPD---- 219 (362)
Q Consensus 157 ~~~~~-~~aD~iEiN---------iSCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~-~~~~~~~Pi~vKLsPd---- 219 (362)
++.+. .+.|.+||. +-+|.+ ..-+...+-++=.+++..+.+...... .......||.+|+||+
T Consensus 150 A~rA~~AGfDgVEiH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~vg~~~~~df~vgvRis~~e~~~ 229 (353)
T cd04735 150 TRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEE 229 (353)
T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHCCC
T ss_conf 99999839998997546575999853998899847367988999889999999999985400589733675158654147
Q ss_pred --CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf --774888999998764498299980665553234577544632211356454246899999997408974899967889
Q gi|254780434|r 220 --LSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGIS 297 (362)
Q Consensus 220 --~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~ 297 (362)
.+.++..++++.+++.|+|.|.++-- ... .... .++ +........+++....++|+|++|||.
T Consensus 230 ~G~~~~e~~~~~~~l~~~gvD~l~vs~g--~~~---~~~~-------~~~---~~~~~~~~~~~~~~~~~iPvi~~G~i~ 294 (353)
T cd04735 230 PGIRMEDTLALVDKLADKGLDYLHISLW--DFD---RKSR-------RGR---DDNQTIMELVKERIAGRLPLIAVGSIN 294 (353)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCC--CCC---CCCC-------CCC---CCCHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 9999999999999998479988996037--766---7776-------677---753558999999967898099989999
Q ss_pred CHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 9999999998399975452787706978999999999
Q gi|254780434|r 298 STKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 298 s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
+++++.+.+..|||+|.++.+++-+ |.+++++.+|=
T Consensus 295 ~~~~ae~~l~~gaD~V~~gR~liad-Pd~~~K~~~Gr 330 (353)
T cd04735 295 TPDDALEALETGADLVAIGRGLLVD-PDWVEKIKEGR 330 (353)
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHC-HHHHHHHHCCC
T ss_conf 8999999998699829986999979-31999998589
No 44
>pfam00724 Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family.
Probab=99.41 E-value=1.1e-10 Score=91.80 Aligned_cols=266 Identities=18% Similarity=0.134 Sum_probs=149.4
Q ss_pred EEEECCEECCCCEEECCCC----CCC-------HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECC
Q ss_conf 1688873359974853468----886-------77988874036752410200136878998862688425554100002
Q gi|254780434|r 46 NTKVAGISLSNPLGMAAGY----DKN-------AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLG 114 (362)
Q Consensus 46 ~~~~~Gl~~~nPiglAaG~----dk~-------~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~G 114 (362)
+.++.+++++|.|+.++=. +.+ ...+.....-|+|.++++.+...+. |...|+...+..++ .+
T Consensus 5 P~~ig~~~lkNRi~~apm~~~~~~~dG~~t~~~~~~y~~rA~gG~GlIi~e~~~V~~~-~~~~~~~~~i~~d~-~i---- 78 (336)
T pfam00724 5 PIKIGNLTLKNRIVMAPMTRLRALEDGTVPERLAEYYSQRAQGGGTLIITEAVFVDPK-GGGFDNQPGLWDDE-QV---- 78 (336)
T ss_pred CCEECCEEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCEECHH-HCCCCCCCCCCCHH-HH----
T ss_conf 8158999977842761107763358999999999999999646974899687178820-05799987467689-99----
Q ss_pred CCCCCHHHHHHHHHHHH-------------------HCCCCCCEEECC--------CCC----HHHHHHHHHHHHHHC-C
Q ss_conf 47777788999876410-------------------001210001104--------542----467887765554206-7
Q gi|254780434|r 115 FNNAGYHTVFSRLSKIQ-------------------PTSPIGINLGAN--------KDS----KDFILDYVSGIRLFF-T 162 (362)
Q Consensus 115 l~N~G~~~~~~~l~~~~-------------------~~~pi~vsI~~~--------~~s----~~~~~dy~~~~~~~~-~ 162 (362)
+++..+.+.+.+.. ...+...|.... .-| ++.+++|...++.+. .
T Consensus 79 ---~~~~~l~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~s~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~A 155 (336)
T pfam00724 79 ---EGWKKLTEAVHENGSKIGVQLWHLGREAPPEYLEDLGLRPSDPSALPASIKVRELTKEEIKEIIQEFVQAAKRAVEA 155 (336)
T ss_pred ---HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf ---99999999998559849997035777688233788888887876678898887699999999999999999999982
Q ss_pred CCCEEEEE---------CCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-------CHHH
Q ss_conf 55269830---------3336--5322110000234321111224445565531268851786505777-------7488
Q gi|254780434|r 163 IASYFTIN---------ISSP--NTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDL-------SEEE 224 (362)
Q Consensus 163 ~aD~iEiN---------iSCP--Nt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~-------~~~~ 224 (362)
+-|.+||+ +-|| |...-+...+.|+=-+++..+.+.... ....+.||.+|++++- .++.
T Consensus 156 GfDGVEIh~ahGyLl~QFLSp~~N~RtDeYGGslENR~Rf~~eIi~aIR~---~vg~d~~i~vRis~~d~~~~g~~~~e~ 232 (336)
T pfam00724 156 GFDGVEIHGAHGYLLDQFLSPGSNKRTDEYGGSIENRARFPLEVVDAVKE---AVGEDRPIGYRLSPDDVFEGGLTGAET 232 (336)
T ss_pred CCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCCEEEECCCCCCCCCCCCHHH
T ss_conf 99989961426789998628765889776788988975489999999999---728776642674652246899884268
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
Q ss_conf 89999987644982999806655532345775446322113564542468999999974089748999678899999999
Q gi|254780434|r 225 LDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALD 304 (362)
Q Consensus 225 i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e 304 (362)
+..++..+.+.++|.+-++... ......+... + +...-..........+++.+ ++|+|++|||.+++++.+
T Consensus 233 ~~~~~~~~~~~g~d~~~~~~~~--~~~~~~~~~~---~--~~~~~~~~~~~~~~~~k~~~--~~pvi~~G~i~~~~~ae~ 303 (336)
T pfam00724 233 LAQFAYAAGELGVRVLDGTRLA--YIHAIEPRVT---G--PFPVETGQQVENNEFIKKVW--KGPVITVGRINDPEFAAE 303 (336)
T ss_pred HHHHHHHHHHHCCCEEECCCCC--EEECCCCCCC---C--CCCCCCCHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHH
T ss_conf 9999999998387756427662--2320244335---7--87756312478999999876--985999699998999999
Q ss_pred HHHCC-CCEEEECHHHHCCCHHHHHHHHHH
Q ss_conf 99839-997545278770697899999999
Q gi|254780434|r 305 KIMAG-ANLIQLYSAMIYEGISLPKRIIQG 333 (362)
Q Consensus 305 ~l~aG-As~VQi~Tali~~Gp~~~~~I~~~ 333 (362)
.+..| ||+|.++.+++.+ |.+++++.++
T Consensus 304 ~l~~g~~D~V~~gR~~iad-Pd~~~k~~~G 332 (336)
T pfam00724 304 IVEEGRADLVAMGRPFLAD-PDLVKKAKEG 332 (336)
T ss_pred HHHCCCCEEHHHHHHHHHC-HHHHHHHHCC
T ss_conf 9987994436866999979-1399999808
No 45
>KOG2335 consensus
Probab=99.39 E-value=3.2e-11 Score=95.39 Aligned_cols=190 Identities=21% Similarity=0.205 Sum_probs=133.9
Q ss_pred HHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC-----CCCCC-CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 000121000110454246788776555420675526983033365322-----11000-023432111122444556553
Q gi|254780434|r 131 QPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPG-----LRSLQ-KKKNLERLLIHVMQTREEEKI 204 (362)
Q Consensus 131 ~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g-----~~~~~-~~~~l~~~l~~v~~~~~~~~~ 204 (362)
..+.|++|.+++|. .+.+++.++.+++++|++-||..||-..- +..++ +++.+.+++.++.
T Consensus 71 ~~D~PLIvQf~~nd-----p~~ll~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~-------- 137 (358)
T KOG2335 71 PEDRPLIVQFGGND-----PENLLKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVR-------- 137 (358)
T ss_pred CCCCCEEEEECCCC-----HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEECCCHHHHHHHHHHHH--------
T ss_conf 77786699974799-----89999999986533472041589987888437726000238899999999998--------
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 12688517865057777488899999876449829998066555323457754463221135645424689999999740
Q gi|254780434|r 205 KTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRV 284 (362)
Q Consensus 205 ~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~ 284 (362)
.....||.+|+-=..+.++-.+.++.++++|++=+++-..| . ...|..+ .|.....|+.+++.+
T Consensus 138 -~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRt----r-------~~kg~~~----~pad~~~i~~v~~~~ 201 (358)
T KOG2335 138 -ANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRT----R-------EQKGLKT----GPADWEAIKAVRENV 201 (358)
T ss_pred -HHCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC----H-------HHCCCCC----CCCCHHHHHHHHHHC
T ss_conf -52599869999855767878999999986798689993655----7-------7628888----876779999999747
Q ss_pred CCCEEEEEECCCCCHHHHHHHHH-CCCCEEEECHHHHCCCHHHH---------HHHHHHHHHHHHHCCCCC-HHHHHC
Q ss_conf 89748999678899999999998-39997545278770697899---------999999999999838997-789616
Q gi|254780434|r 285 GPKIAIIGTGGISSTKDALDKIM-AGANLIQLYSAMIYEGISLP---------KRIIQGLSDFLNKENEVN-FENIRG 351 (362)
Q Consensus 285 ~~~i~IIg~GGI~s~~Da~e~l~-aGAs~VQi~Tali~~Gp~~~---------~~I~~~L~~~l~~~G~~s-i~e~iG 351 (362)
+. +|+|+-|+|.+.+|+..-+. -||+-|+++-|+.++ |.+| -.+.++--.+..+.+-.+ ...++.
T Consensus 202 ~~-ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~N-Pa~F~~~~~~~~~~~~~~~~l~~~~e~~g~~~~~~~~~ 277 (358)
T KOG2335 202 PD-IPVIANGNILSLEDVERCLKYTGADGVMSARGLLYN-PALFLTAGYGPTPWGCVEEYLDIAREFGGLSSFSLIRH 277 (358)
T ss_pred CC-CCEEEECCCCCHHHHHHHHHHHCCCEEEECCHHHCC-CHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 67-708950885768999999997587468860000038-41202688777878899999999997279723667888
No 46
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.38 E-value=2.2e-10 Score=89.85 Aligned_cols=262 Identities=16% Similarity=0.142 Sum_probs=143.7
Q ss_pred EEEECCEECCCCEEECCC----C-CCC-------HHHHHHHHHCCCCEEECCCCCCCCCCC-CCCCCEEEEECCCCCEEE
Q ss_conf 168887335997485346----8-886-------779888740367524102001368789-988626884255541000
Q gi|254780434|r 46 NTKVAGISLSNPLGMAAG----Y-DKN-------AEVPIELLKLGFGFVEIGTVTPHPQAG-NPRPRVFRLTKDRAIINK 112 (362)
Q Consensus 46 ~~~~~Gl~~~nPiglAaG----~-dk~-------~~~~~~l~~~G~G~v~~ktit~~p~~G-Np~PR~~r~~~~~~iiN~ 112 (362)
+.++.+++|+|.|+.++= + +.+ .++..+...-|+|.++++.+...+... .+.|... .
T Consensus 4 P~~ig~l~lkNRiv~apm~~~~~~~~dG~~t~~~~~yy~~rA~gG~GlIi~e~~~V~~~~~~~~~~~~~----------~ 73 (382)
T cd02931 4 PIKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLP----------C 73 (382)
T ss_pred CCEECCEEECCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCCCCCC----------C
T ss_conf 844899986885277887865666899898999999999996658647895241266665668988878----------7
Q ss_pred CCCCC----CCHHHHHHHHHHHHHCCCCCCEE-----------------------ECCC---------CC----HHHHHH
Q ss_conf 02477----77788999876410001210001-----------------------1045---------42----467887
Q gi|254780434|r 113 LGFNN----AGYHTVFSRLSKIQPTSPIGINL-----------------------GANK---------DS----KDFILD 152 (362)
Q Consensus 113 ~Gl~N----~G~~~~~~~l~~~~~~~pi~vsI-----------------------~~~~---------~s----~~~~~d 152 (362)
.++.. +++..+.+.+.+ .+..+++.+ ..+. -| ++.+++
T Consensus 74 ~~~~~~~~i~~~k~l~~~vH~--~G~~i~~QL~h~~gr~~~~~~~~~~~~~~pS~~~~~~~~~~~~r~mt~~eI~~ii~~ 151 (382)
T cd02931 74 PTYNPTAFIRTAKEMTERVHA--YGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGK 151 (382)
T ss_pred CCCCCHHHHHHHHHHHHHHHH--CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 776859999999999999985--489068630665466457654789985788656445688877776899999999999
Q ss_pred HHHHHHHHC-CCCCEEEEEC----------CCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 765554206-7552698303----------336--532211000023432111122444556553126885178650577
Q gi|254780434|r 153 YVSGIRLFF-TIASYFTINI----------SSP--NTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPD 219 (362)
Q Consensus 153 y~~~~~~~~-~~aD~iEiNi----------SCP--Nt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd 219 (362)
|.+.++.+. .+.|.+||.- -+| |...-+...+-++=-+++..+.+... .....+.||.+|+|++
T Consensus 152 f~~AA~rA~~AGfDgVEIH~ah~GyLl~qFlSp~~N~RtDeYGGSlenR~Rf~~Evi~aVR---~~vg~d~~v~~R~s~~ 228 (382)
T cd02931 152 FGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIK---ARCGEDFPVSLRYSVK 228 (382)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHH---HHHCCCCEEEEEECCC
T ss_conf 9999999998499989962453035899854873589886458987885618999999999---9709887389996563
Q ss_pred C--------------------CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 7--------------------74888999998764498299980665553234577544632211356454246899999
Q gi|254780434|r 220 L--------------------SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAK 279 (362)
Q Consensus 220 ~--------------------~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~ 279 (362)
. +.++...+++.+++.|+|.+-++-...+......+...... ..-+...+.
T Consensus 229 ~~~~~~~~g~~~~~~~~~~g~~l~e~~~~~~~l~~~G~D~l~vs~g~~~~~~~~~~~~~~~~---------g~~~~~a~~ 299 (382)
T cd02931 229 SYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKK---------GMYLPYCKA 299 (382)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHCCCCCCCCCC---------CCCHHHHHH
T ss_conf 34566545788577788876359999999999998398889647774211010379754676---------314899999
Q ss_pred HHHHCCCCEEEEEECCCCCHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 997408974899967889999999999839-9975452787706978999999999
Q gi|254780434|r 280 IRQRVGPKIAIIGTGGISSTKDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 280 i~~~~~~~i~IIg~GGI~s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
+++.+ ++|+|++|||.++++|.+.|..| ||+|.++.+++-+ |.+++++.++-
T Consensus 300 ik~~~--~iPvi~~G~i~~p~~ae~~l~~g~aD~V~~gR~~iad-P~~v~K~~~G~ 352 (382)
T cd02931 300 LKEVV--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLAD-PDVVNKIRRGR 352 (382)
T ss_pred HHHHC--CCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHC-CCHHHHHHCCC
T ss_conf 99873--9988996896999999999986996543622898869-35999998299
No 47
>KOG0538 consensus
Probab=99.38 E-value=5.8e-10 Score=86.93 Aligned_cols=296 Identities=18% Similarity=0.172 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHHHHH-HHH-CCCCCCCCCCEEEECCEECCCCEEECCC-------CCCCHHHHHHHHHCCCCEEECC--C
Q ss_conf 678899999999620-111-0467889631168887335997485346-------8886779888740367524102--0
Q gi|254780434|r 18 PEIAHHLSIVALKSG-LLS-FFPVHSDPRLNTKVAGISLSNPLGMAAG-------YDKNAEVPIELLKLGFGFVEIG--T 86 (362)
Q Consensus 18 pe~ah~~~~~~~~~~-~~~-~~~~~~~~~L~~~~~Gl~~~nPiglAaG-------~dk~~~~~~~l~~~G~G~v~~k--t 86 (362)
-|..|+-.+.+.+.. +.| .+.....+|++|+++|-+..-||++|.- +|......++...+|...+..- |
T Consensus 29 d~~Tl~~N~~AF~ri~~rPr~L~dV~~iD~sTtvlG~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~~~~i~Ss~at 108 (363)
T KOG0538 29 DQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQKMAHPDGELATARAAQAAGTIMILSSWAT 108 (363)
T ss_pred CHHHHHHHHHHHHHHHCCCHHHEECCCCCCCEEECCCCCCCEEEECCHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCHH
T ss_conf 40218778999875501421430025355410331401264168751667660488622788898865698589731010
Q ss_pred CCCCC--CCCCCCCCEEEEE--CCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 01368--7899886268842--5554100002477777889998764100012100011045424678877655542067
Q gi|254780434|r 87 VTPHP--QAGNPRPRVFRLT--KDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFT 162 (362)
Q Consensus 87 it~~p--~~GNp~PR~~r~~--~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~ 162 (362)
.|.+. ..+-|.-|.|.+. +++.+ -+.+.+|.++.... -+.+-+-...- +....|.-. .|.-
T Consensus 109 ~S~EdI~~aap~~~rwfQLYvykdr~I----------t~~Lv~raEk~Gfk-AlvlTvDtP~l-G~R~~D~~n---~f~l 173 (363)
T KOG0538 109 CSVEDIASAAPPGIRWFQLYVYKDRDI----------TEQLVKRAEKAGFK-ALVLTVDTPRL-GRRESDIKN---KFSL 173 (363)
T ss_pred CCHHHHHHHCCCCCEEEEEEECCCHHH----------HHHHHHHHHHCCCE-EEEEEECCCCC-CCCHHHHHH---CCCC
T ss_conf 789999851887737999985374468----------99999999972966-99998346112-676044440---2568
Q ss_pred CCCEEEEECCCCCCCCCCCCCCH----HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 55269830333653221100002----34321111224445565531268851786505777748889999987644982
Q gi|254780434|r 163 IASYFTINISSPNTPGLRSLQKK----KNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVE 238 (362)
Q Consensus 163 ~aD~iEiNiSCPNt~g~~~~~~~----~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~d 238 (362)
-....--|+-.+.-.....- .. .........-.++.+-...+..++.||++|== ++ .+=|..|.|+|++
T Consensus 174 p~~l~lknfe~~~~~~v~~~-~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~lPIvvKGi--lt----~eDA~~Ave~G~~ 246 (363)
T KOG0538 174 PKNLTLKNFEGLKLTEVEEA-GDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGV--LT----GEDARKAVEAGVA 246 (363)
T ss_pred CCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEE--CC----CHHHHHHHHHCCC
T ss_conf 74210026555665567866-31346666423788777742469998527587699831--14----3879999980886
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf 99980665553234577544632211356454246899999997408974899967889999999999839997545278
Q gi|254780434|r 239 GIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSA 318 (362)
Q Consensus 239 Giv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Ta 318 (362)
||+++|-- .| +.-+ -|.+...+.++-+.+++++++.=-|||.+|.|+++.+..||..|-++..
T Consensus 247 GIIVSNHG-gR---------QlD~-------vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP 309 (363)
T KOG0538 247 GIIVSNHG-GR---------QLDY-------VPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRP 309 (363)
T ss_pred EEEEECCC-CC---------CCCC-------CCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCEEEECCC
T ss_conf 59985787-53---------2576-------6411887999999862854799726733542799998516736885672
Q ss_pred HHC----CCHHHHHH----HHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf 770----69789999----99999999998389977896169
Q gi|254780434|r 319 MIY----EGISLPKR----IIQGLSDFLNKENEVNFENIRGS 352 (362)
Q Consensus 319 li~----~Gp~~~~~----I~~~L~~~l~~~G~~si~e~iG~ 352 (362)
++| +|-.-+++ +.+|+.--|.--|+.|+.|+--.
T Consensus 310 ~v~gLA~~Ge~GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~ 351 (363)
T KOG0538 310 IVWGLAAKGEAGVKKVLDILRDEFELTMALSGCRSVKEITRN 351 (363)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC
T ss_conf 102000256032999999999999999998478606540745
No 48
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.35 E-value=8.4e-10 Score=85.87 Aligned_cols=260 Identities=23% Similarity=0.276 Sum_probs=152.2
Q ss_pred EEEECCEECCCCEEECC---------CC--CCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECC
Q ss_conf 16888733599748534---------68--88677988874036752410200136878998862688425554100002
Q gi|254780434|r 46 NTKVAGISLSNPLGMAA---------GY--DKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLG 114 (362)
Q Consensus 46 ~~~~~Gl~~~nPiglAa---------G~--dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~G 114 (362)
+.++.+++++|.|..|. |. |...++..+...-|+|.+.+++....|. |...| |..|
T Consensus 9 P~~lg~~~L~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~-g~~~~------------~~~~ 75 (363)
T COG1902 9 PLKLGGLTLKNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPG-GRGYP------------GQPG 75 (363)
T ss_pred CEEECCEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCC-CCCCC------------CCCC
T ss_conf 8147998760523654755454569999888999999998648977799966740755-46589------------9866
Q ss_pred CCC----CCHHHHHHHHHHHHH------------------C--CCCCCEEECC----C--C---C----HHHHHHHHHHH
Q ss_conf 477----777889998764100------------------0--1210001104----5--4---2----46788776555
Q gi|254780434|r 115 FNN----AGYHTVFSRLSKIQP------------------T--SPIGINLGAN----K--D---S----KDFILDYVSGI 157 (362)
Q Consensus 115 l~N----~G~~~~~~~l~~~~~------------------~--~pi~vsI~~~----~--~---s----~~~~~dy~~~~ 157 (362)
+-+ +|+..+.+.+.+... . .++..|-... . + | ++-++||.+.+
T Consensus 76 l~~d~~i~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~eeI~~ii~~f~~AA 155 (363)
T COG1902 76 LWSDAQIPGLKRLTEAVHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAA 155 (363)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 57866738899999999856995999822776133223567876457774425667888886589999999999999999
Q ss_pred HHHC-CCCCEEEE---------ECCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC----
Q ss_conf 4206-75526983---------0333653--221100002343211112244455655312688517865057777----
Q gi|254780434|r 158 RLFF-TIASYFTI---------NISSPNT--PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLS---- 221 (362)
Q Consensus 158 ~~~~-~~aD~iEi---------NiSCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~---- 221 (362)
+.+. .+-|.+|| .+=||.+ ..-+...+-|+=.+++..+.+..... -....||.++|||+-.
T Consensus 156 ~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~---vg~~~~vg~Rls~~d~~~~~ 232 (363)
T COG1902 156 RRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREA---VGADFPVGVRLSPDDFFDGG 232 (363)
T ss_pred HHHHHCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---HCCCCEEEEEECCCCCCCCC
T ss_conf 999983999899840444499985587557777766885899988999999999997---29886699997745467788
Q ss_pred ---HHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf ---488899999876449-8299980665553234577544632211356454246899999997408974899967889
Q gi|254780434|r 222 ---EEELDDIAVEVLSHK-VEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGIS 297 (362)
Q Consensus 222 ---~~~i~~ia~~a~~~g-~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~ 297 (362)
.++..++++.+.+.| +|-+.++.-..... ......+ .| .-+.....++... .+|+|++|+|.
T Consensus 233 g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~------~~~~~~~-~~-----~~~~~a~~i~~~~--~~pvi~~G~i~ 298 (363)
T COG1902 233 GLTIEEAVELAKALEEAGLVDYIHVSEGGYERG------GTITVSG-PG-----YQVEFAARIKKAV--RIPVIAVGGIN 298 (363)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC------CCCCCCC-CC-----HHHHHHHHHHHHC--CCCEEEECCCC
T ss_conf 888999999999998558844799603644578------8744466-41-----2478999998860--78779868979
Q ss_pred CHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999999839-997545278770697899999999999
Q gi|254780434|r 298 STKDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQGLSD 336 (362)
Q Consensus 298 s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~L~~ 336 (362)
+++.|.+.+..| ||+|.++.+++-+ |.++.++.+++..
T Consensus 299 ~~~~Ae~~l~~g~aDlVa~gR~~lad-P~~v~k~~~g~~~ 337 (363)
T COG1902 299 DPEQAEEILASGRADLVAMGRPFLAD-PDLVLKAAEGREL 337 (363)
T ss_pred CHHHHHHHHHCCCCCEEEECHHHHCC-CCHHHHHHCCCCC
T ss_conf 99999999982998888726366509-2089999737876
No 49
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.32 E-value=1.8e-10 Score=90.35 Aligned_cols=189 Identities=17% Similarity=0.200 Sum_probs=121.3
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf 88677988874036752410200136878998862688425554100002477777889998764100012100011045
Q gi|254780434|r 65 DKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANK 144 (362)
Q Consensus 65 dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~ 144 (362)
+...|..+.+.+.|+.++.+++.+..|+...+.- ....++. +...+.|+++++..+.
T Consensus 12 ~~~~E~a~~~~~aGa~~i~~~~~~~~~~~~~~~~----------------------~~~i~~~-~~~t~~P~~v~~~~~~ 68 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDD----------------------KEVLKEV-AAETDLPLGVQLAIND 68 (200)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH----------------------HHHHHHH-HHHCCCCEEEEEECCC
T ss_conf 7899999999868873688648879824616999----------------------9999999-9707998799842056
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
Q ss_conf 42467887765554206755269830333653221100002343211112244455655312688517865057777488
Q gi|254780434|r 145 DSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEE 224 (362)
Q Consensus 145 ~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~ 224 (362)
... ....+.+.+ ...++|.++++-.||+.. +...+++..+++. ....++++|++|..
T Consensus 69 ~~~-~~~~~~~~~--~~~g~d~v~i~~~~~~~~--------~~~~~~~~~~~~~--------~~~~~vi~~~~~~~---- 125 (200)
T cd04722 69 AAA-AVDIAAAAA--RAAGADGVEIHGAVGYLA--------REDLELIRELREA--------VPDVKVVVKLSPTG---- 125 (200)
T ss_pred CCC-CCHHHHHHH--HHCCCCEEEECCCCCCCC--------CCHHHHHHHHHHH--------CCCCEEEEECCCCC----
T ss_conf 666-775999999--983999899789996543--------0068999999984--------48964999689999----
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
Q ss_conf 89999987644982999806655532345775446322113564542468999999974089748999678899999999
Q gi|254780434|r 225 LDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALD 304 (362)
Q Consensus 225 i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e 304 (362)
...+..+++.|+|.+.+.+... +-.++...+....++..+++.. ++|+|+.|||.+++|+.+
T Consensus 126 -~~~~~~a~~~g~~~v~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~--~ipvi~~gGi~~~~~~~~ 187 (200)
T cd04722 126 -ELAAAAAEEAGVDEVGLGNGGG---------------GGGGRDAVPIADLLLILAKRGS--KVPVIAGGGINDPEDAAE 187 (200)
T ss_pred -HHHHHHHHHCCCCEEEECCCCC---------------CCCCCCCCCHHHHHHHHHHHHC--CCCEEEECCCCCHHHHHH
T ss_conf -9999999980997999708746---------------7888766611689999999857--999899758799999999
Q ss_pred HHHCCCCEEEECH
Q ss_conf 9983999754527
Q gi|254780434|r 305 KIMAGANLIQLYS 317 (362)
Q Consensus 305 ~l~aGAs~VQi~T 317 (362)
.+.+|||.|+++|
T Consensus 188 ~~~~gAdgv~vGs 200 (200)
T cd04722 188 ALALGADGVIVGS 200 (200)
T ss_pred HHHCCCCEEEECC
T ss_conf 9985998898188
No 50
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.30 E-value=5.7e-10 Score=87.01 Aligned_cols=259 Identities=17% Similarity=0.163 Sum_probs=139.6
Q ss_pred EEEECCEECCCCEEECC---CC--CCCH---HHHHHHHHCCCCEEECCCCCCCCCC-CCCC--CCEEEEECCCCCEEECC
Q ss_conf 16888733599748534---68--8867---7988874036752410200136878-9988--62688425554100002
Q gi|254780434|r 46 NTKVAGISLSNPLGMAA---GY--DKNA---EVPIELLKLGFGFVEIGTVTPHPQA-GNPR--PRVFRLTKDRAIINKLG 114 (362)
Q Consensus 46 ~~~~~Gl~~~nPiglAa---G~--dk~~---~~~~~l~~~G~G~v~~ktit~~p~~-GNp~--PR~~r~~~~~~iiN~~G 114 (362)
+.++.+++++|.|+.|+ +. +... .+......-|+|.++++.+...|.. ..|. ++++. + ..+
T Consensus 11 P~~ig~l~lkNRiv~ap~~~~~~~~~~~~~~~~~~~rA~GG~GlIite~~~V~~~~~~~~~~~~~l~~---d-~~i---- 82 (370)
T cd02929 11 PIKIGPVTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPRISARLWD---D-GDI---- 82 (370)
T ss_pred CCCCCCEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCCCCCCCCC---H-HHH----
T ss_conf 83289999898678798988888999579999999984668149996504861030458898877379---8-999----
Q ss_pred CCCCCHHHHHHHHHHHH-------------------HCCCCCCEEECC----------CC-C----HHHHHHHHHHHHHH
Q ss_conf 47777788999876410-------------------001210001104----------54-2----46788776555420
Q gi|254780434|r 115 FNNAGYHTVFSRLSKIQ-------------------PTSPIGINLGAN----------KD-S----KDFILDYVSGIRLF 160 (362)
Q Consensus 115 l~N~G~~~~~~~l~~~~-------------------~~~pi~vsI~~~----------~~-s----~~~~~dy~~~~~~~ 160 (362)
+|+..+.+.+.++. ...|+..|-... .. | ++.+++|.+.++.+
T Consensus 83 ---~~~k~l~d~vH~~G~~i~~QL~H~G~~~~~~~~~~~~~~pS~~~~~~~~~~~~~~r~mt~~eI~~ii~~f~~AA~rA 159 (370)
T cd02929 83 ---RNLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAALRA 159 (370)
T ss_pred ---HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf ---99999999999669967885335667776434689987864355566779998786689999999999999999999
Q ss_pred C-CCCCEEEEE---------CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC--------
Q ss_conf 6-755269830---------333653--22110000234321111224445565531268851786505777--------
Q gi|254780434|r 161 F-TIASYFTIN---------ISSPNT--PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDL-------- 220 (362)
Q Consensus 161 ~-~~aD~iEiN---------iSCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~-------- 220 (362)
. .+-|.+||. +-||.+ ..-+...+.++=.+++..+.++... ....+.||.+|++++.
T Consensus 160 ~~AGfDgVEIHaahGYLl~qFlSp~~N~RtDeYGGS~enR~Rf~~Eii~aVr~---~vg~df~i~~R~s~~~~~~~~g~~ 236 (370)
T cd02929 160 RDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKD---AVGDDCAVATRFSVDELIGPGGIE 236 (370)
T ss_pred HHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCEEEEEECCCCCCCCCCCC
T ss_conf 98598989977113559997347745787774689889998999999999999---719987599998941256889998
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHH
Q ss_conf 74888999998764498299980665553234577544632211356454246899999997408974899967889999
Q gi|254780434|r 221 SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTK 300 (362)
Q Consensus 221 ~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~ 300 (362)
+.++..++++.+.+. +|-+-+.-.. ............. ...+...+.+++.+ ++|+|++|||.+++
T Consensus 237 ~~~~~~~~~~~~~~~-~d~~~vs~g~--~~~~~~~~~~~~~---------g~~~~~~~~ik~~~--~~Pvi~vG~i~~p~ 302 (370)
T cd02929 237 SEGEGVEFVEMLDEL-PDLWDVNVGD--WANDGEDSRFYPE---------GHQEPYIKFVKQVT--SKPVVGVGRFTSPD 302 (370)
T ss_pred CHHHHHHHHHHHHCC-CCEEEEEECC--CCCCCCCCCCCCC---------CCCHHHHHHHHHHC--CCCEEEECCCCCHH
T ss_conf 889999999997365-7979988555--5665677776786---------43659999999860--88089978979999
Q ss_pred HHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHH
Q ss_conf 999999839-997545278770697899999999
Q gi|254780434|r 301 DALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQG 333 (362)
Q Consensus 301 Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~ 333 (362)
.|.+.|..| ||+|.++.+++-+ |.+++++.+|
T Consensus 303 ~ae~~l~~G~aD~V~~gR~llaD-Pd~~~K~~~G 335 (370)
T cd02929 303 KMVEVVKSGILDLIGAARPSIAD-PFLPKKIREG 335 (370)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHC-CHHHHHHHCC
T ss_conf 99999987994264534798769-5399999808
No 51
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.29 E-value=3.9e-10 Score=88.14 Aligned_cols=291 Identities=18% Similarity=0.161 Sum_probs=161.6
Q ss_pred HHCCCCCCCCCCEEEECCEECCCCEEECCCCCCC-HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEE
Q ss_conf 1104678896311688873359974853468886-779888740367524102001368789988626884255541000
Q gi|254780434|r 34 LSFFPVHSDPRLNTKVAGISLSNPLGMAAGYDKN-AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINK 112 (362)
Q Consensus 34 ~~~~~~~~~~~L~~~~~Gl~~~nPiglAaG~dk~-~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~ 112 (362)
+....+..++..+.+++|-++.+|+|.|||+-+. +.-+-...-.|.-|+|.|||-.--..-=|||++- .+|++. |-
T Consensus 30 ~~~~~y~~~~~~~~~~fg~~~~tp~GpAaGPhtQlaQNiv~s~~~G~Rf~ElKTvQ~~d~~el~kPCI~--a~de~y-N~ 106 (1012)
T TIGR03315 30 PKRKFYRADPGKYISLFGEKLETPVGPAAGPHTQLAQNIVASYLTGGRFFELKTVQVLDGLDLPKPCID--AADECY-NV 106 (1012)
T ss_pred CHHHCEECCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCC--CCCCEE-EE
T ss_conf 477631079997651103337888887889558999999999974561578776676044436777636--566234-10
Q ss_pred CCCCCCCH-HHHHHH---------HHHH-----HHCCCCCCEEECCCCC--HHHHHHHHHHHHHHCC-------------
Q ss_conf 02477777-889998---------7641-----0001210001104542--4678877655542067-------------
Q gi|254780434|r 113 LGFNNAGY-HTVFSR---------LSKI-----QPTSPIGINLGANKDS--KDFILDYVSGIRLFFT------------- 162 (362)
Q Consensus 113 ~Gl~N~G~-~~~~~~---------l~~~-----~~~~pi~vsI~~~~~s--~~~~~dy~~~~~~~~~------------- 162 (362)
-+-.---+ +.+-+. |.+. ..+...-.|+|++-+. ...+++|.+.|+...+
T Consensus 107 EWStEl~v~~a~~EYikaw~~l~~l~~~~~~~~~~~f~fnmSvGYdl~GIks~kv~~fi~~m~das~~~~~~~~~~~l~~ 186 (1012)
T TIGR03315 107 EWSTELTVPEAYDEYVKAWFLLHLLEKEFELGDPRGFMFNMSVGYDLAGIKSPKVDRYIEEMQDASGTPIFAECRATLKK 186 (1012)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 21300020788999999999999999970888877617973313174545766689999986633157699999999999
Q ss_pred CCC------EEEEECCCC---CCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC-------------
Q ss_conf 552------698303336---5322110000--2343211112244455655312688517865057-------------
Q gi|254780434|r 163 IAS------YFTINISSP---NTPGLRSLQK--KKNLERLLIHVMQTREEEKIKTGKFVPIFLKISP------------- 218 (362)
Q Consensus 163 ~aD------~iEiNiSCP---Nt~g~~~~~~--~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsP------------- 218 (362)
..| .--|+=-+| |+--+..||. ++.++.+..-+.+ .+++-.|+|+-|
T Consensus 187 ~~~~f~~~~~~~~~~i~~~i~~~~tlST~HGcpp~EIe~I~~yl~~---------ek~l~t~iK~NpTllgy~~~r~~ld 257 (1012)
T TIGR03315 187 YIDYFKKVDDEFIDAISPKVCHSVTLSTMHGCPPDEIEAICRYLLE---------EKGLHTFVKLNPTLLGYKFVRDTMD 257 (1012)
T ss_pred HHHHHHHCCHHHHHCCCHHHCCCEEEHHCCCCCHHHHHHHHHHHHH---------CCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 9988753368777318922218466410469897999999999985---------0577668851742015899999998
Q ss_pred ----------------CCCHHHHHHHH----HHHHHCCC-CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf ----------------77748889999----98764498-2999806655532345775446322113564542468999
Q gi|254780434|r 219 ----------------DLSEEELDDIA----VEVLSHKV-EGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIAL 277 (362)
Q Consensus 219 ----------------d~~~~~i~~ia----~~a~~~g~-dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i 277 (362)
|++.++...+. +.+.+.|. -|+-++||..-. ......+.+.==|||++|+|++..+.
T Consensus 258 ~~g~~yi~~~~~~F~~Dlq~~~a~~ml~rl~~la~~~~l~fGvKltNT~~v~--~~~~~lP~~eMYmSG~~L~plsi~~a 335 (1012)
T TIGR03315 258 EMGFDYIVLKEESFSHDLQYEDAVAMLQRLQLLAKEKGLGFGVKLTNTLPVT--IAKGELPGEEMYMSGRALFPLSINLA 335 (1012)
T ss_pred HCCCCEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEE--ECCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 6098527427665344354678999999999999972965658870430056--12687996332035885620158999
Q ss_pred HHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-CCHHHHHHHHHHHHHHHH
Q ss_conf 99997408974899967889999999999839997545278770-697899999999999999
Q gi|254780434|r 278 AKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY-EGISLPKRIIQGLSDFLN 339 (362)
Q Consensus 278 ~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~-~Gp~~~~~I~~~L~~~l~ 339 (362)
.++++..++++||.=+||+.- ....+-+.+|-.-|-++|-+.- -|+.-...+.++|...+.
T Consensus 336 ~~l~~~f~g~l~isysgGad~-~ni~~i~~~gi~piT~at~lLkpgGy~r~~q~a~~l~~~~~ 397 (1012)
T TIGR03315 336 AKLSREFDGKLQISYSGGADI-FNIKEIFDTGIWPITMATTLLKPGGYLRLNQCANELETSEY 397 (1012)
T ss_pred HHHHHHHCCCCCEEEECCCCH-HCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 999997099751366467542-25999997298500321021687627999999999874023
No 52
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.28 E-value=1.6e-09 Score=83.98 Aligned_cols=250 Identities=19% Similarity=0.213 Sum_probs=137.0
Q ss_pred EEEECCEECCCCEEECCC----CCCCH----HHHHHHH-HCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCC
Q ss_conf 168887335997485346----88867----7988874-03675241020013687899886268842555410000247
Q gi|254780434|r 46 NTKVAGISLSNPLGMAAG----YDKNA----EVPIELL-KLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFN 116 (362)
Q Consensus 46 ~~~~~Gl~~~nPiglAaG----~dk~~----~~~~~l~-~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~ 116 (362)
+.++.|++++|.|+.|+= .+.++ .++..+. .+|+|.++++.+...|. |-..| +..|+-
T Consensus 5 P~~Ig~~~lkNRiv~apm~~~~~~~~G~pt~~~~~yy~~rAg~GlIi~e~~~V~~~-g~~~~------------~~~~l~ 71 (338)
T cd02933 5 PLKLGNLTLKNRIVMAPLTRSRADPDGVPTDLMAEYYAQRASAGLIITEATQISPQ-GQGYP------------NTPGIY 71 (338)
T ss_pred CCEECCEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCEEECCC-CCCCC------------CCCCCC
T ss_conf 80689998478728634578745999999999999999858855799723697542-04699------------987322
Q ss_pred CC----CHHHHHHHHHHHH---------------------HCCCCCCEEEC--------------C--C-CC----HHHH
Q ss_conf 77----7788999876410---------------------00121000110--------------4--5-42----4678
Q gi|254780434|r 117 NA----GYHTVFSRLSKIQ---------------------PTSPIGINLGA--------------N--K-DS----KDFI 150 (362)
Q Consensus 117 N~----G~~~~~~~l~~~~---------------------~~~pi~vsI~~--------------~--~-~s----~~~~ 150 (362)
++ ++..+.+.+.++. -..|++.|--. . + -| ++.+
T Consensus 72 ~d~~i~~~~~l~~~vh~~Ga~~~~QL~H~Gr~~~~~~~~~g~~~~apS~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ii 151 (338)
T cd02933 72 TDEQVEGWKKVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIV 151 (338)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 39999999999999985589558875026766786355689960536888778775455666688888558999999999
Q ss_pred HHHHHHHHHHC-CCCCEEEEEC---------CCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 87765554206-7552698303---------3365--3221100002343211112244455655312688517865057
Q gi|254780434|r 151 LDYVSGIRLFF-TIASYFTINI---------SSPN--TPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISP 218 (362)
Q Consensus 151 ~dy~~~~~~~~-~~aD~iEiNi---------SCPN--t~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsP 218 (362)
++|+..++.+. .+.|.+||.- -||- ...-+...+-++=.+++..+.+...... ... .|.+||||
T Consensus 152 ~~f~~aA~ra~~AGfDgVEiHaaHGyLl~qFLSp~~N~RtDeYGGS~eNR~Rf~~Eii~aIR~~v---g~d-~i~vRlSp 227 (338)
T cd02933 152 ADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAI---GAD-RVGIRLSP 227 (338)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---CCC-EEEEEECC
T ss_conf 99999999999839999998224406899853853268989789998999899999999999972---987-08999657
Q ss_pred CC---------CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 77---------748889999987644982999806655532345775446322113564542468999999974089748
Q gi|254780434|r 219 DL---------SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIA 289 (362)
Q Consensus 219 d~---------~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~ 289 (362)
.. +.++...+++.+.+.|+|-+.++.. . .++.+ ...-......+++.+ ++|
T Consensus 228 ~~~~~g~~~~~~~~~~~~~~~~l~~~gid~~~v~~~-----~------------~~~~~-~~~~~~~~~~ir~~~--~~p 287 (338)
T cd02933 228 FGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEP-----R------------VAGNP-EDQPPDFLDFLRKAF--KGP 287 (338)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-----C------------CCCCC-CCCCHHHHHHHHHHC--CCC
T ss_conf 667688788877999999999999859988997268-----7------------77777-776577999999986--997
Q ss_pred EEEECCCCCHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 99967889999999999839-9975452787706978999999999
Q gi|254780434|r 290 IIGTGGISSTKDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 290 IIg~GGI~s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
+|++||+ +.+.+.+.|..| ||+|.++.+++-+ |.+++++.+|.
T Consensus 288 vi~~G~i-~~~~ae~~l~~G~~D~V~~gR~liaD-P~~~~K~~~G~ 331 (338)
T cd02933 288 LIAAGGY-DAESAEAALADGKADLVAFGRPFIAN-PDLVERLKNGA 331 (338)
T ss_pred EEEECCC-CHHHHHHHHHCCCCCHHHHHHHHHHC-CCHHHHHHCCC
T ss_conf 9996998-99999999987996036852999879-13999996399
No 53
>TIGR02708 L_lactate_ox L-lactate oxidase; InterPro: IPR014080 Members of this entry oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence..
Probab=99.27 E-value=9.7e-10 Score=85.45 Aligned_cols=284 Identities=19% Similarity=0.274 Sum_probs=165.6
Q ss_pred HHHHHHHHHH--HHHCCCCCCCCCCEEEECCEECCCCEEEC--C--CC---CCCHHHHHHHHHCCCCEEECCC----CCC
Q ss_conf 9999999620--11104678896311688873359974853--4--68---8867798887403675241020----013
Q gi|254780434|r 23 HLSIVALKSG--LLSFFPVHSDPRLNTKVAGISLSNPLGMA--A--GY---DKNAEVPIELLKLGFGFVEIGT----VTP 89 (362)
Q Consensus 23 ~~~~~~~~~~--~~~~~~~~~~~~L~~~~~Gl~~~nPiglA--a--G~---dk~~~~~~~l~~~G~G~v~~kt----it~ 89 (362)
+-...+.++. .+........|+-++++.|-++++|+++| | ++ .+..-.-+.+.++| -+-+-| +++
T Consensus 46 r~N~Raf~HKL~~P~~~~~VE~P~T~~~~~G~~l~~P~I~APvAAH~LA~~~~E~atAr~v~EFG--~i~~~S~YS~~~l 123 (368)
T TIGR02708 46 RENIRAFNHKLIVPHLLQDVENPSTEIEFLGEKLKSPLIMAPVAAHKLANEQGEVATARGVSEFG--SIYTTSSYSTADL 123 (368)
T ss_pred HHCCHHHCCCCCCCHHHCCCCCCCCEEEECCCEECCCEEECCHHHHHHHHCCCCHHHHHHHHHCC--CCEEEECCCCCCH
T ss_conf 43102232420135233046788731676264104860441157643310012012210021203--1001101246767
Q ss_pred CC-CCC-CCCCCEEEE--ECCCCCEEECCCCCCCHHHHHHHHHHHHHCC-CCC--CEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 68-789-988626884--2555410000247777788999876410001-210--0011045424678877655542067
Q gi|254780434|r 90 HP-QAG-NPRPRVFRL--TKDRAIINKLGFNNAGYHTVFSRLSKIQPTS-PIG--INLGANKDSKDFILDYVSGIRLFFT 162 (362)
Q Consensus 90 ~p-~~G-Np~PR~~r~--~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~-pi~--vsI~~~~~s~~~~~dy~~~~~~~~~ 162 (362)
++ .++ |=.||-|.+ .+|+.+ | ..++.+.|.--... .|- .-+++|.+-+ .-.
T Consensus 124 ~EIS~aL~G~P~WFQ~Y~~KDD~~-N---------R~I~D~~Ka~G~~AIvLTADaTV~GNR~~D-~~N----------- 181 (368)
T TIGR02708 124 PEISEALNGTPHWFQFYMSKDDGI-N---------RDILDRVKADGAKAIVLTADATVGGNREVD-KRN----------- 181 (368)
T ss_pred HHHHHHHCCCCCEEEEEEECCCCC-C---------HHHHHHHHHCCCEEEEEECCCCCCCCCCCC-CCC-----------
T ss_conf 999976279971588887403433-3---------467888752785289972146335774413-558-----------
Q ss_pred CCCEEEEECCCCCCCC-CCCCCCHHHHHHHHHHHH---HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 5526983033365322-110000234321111224---445565531268851786505777748889999987644982
Q gi|254780434|r 163 IASYFTINISSPNTPG-LRSLQKKKNLERLLIHVM---QTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVE 238 (362)
Q Consensus 163 ~aD~iEiNiSCPNt~g-~~~~~~~~~l~~~l~~v~---~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~d 238 (362)
-+..=+.-|=+.. ++--.....|+.+-.+-+ ..++.+.+....-+|||||=. . ..+=++.+.++|+.
T Consensus 182 ---~FVfP~GMPIV~~YL~G~~~G~s~~~vY~~aKQ~lsprDiE~IA~ySGLPVyVKG~-Q-----~~ED~~~al~AGAS 252 (368)
T TIGR02708 182 ---GFVFPVGMPIVQEYLPGEGAGKSLDYVYKSAKQKLSPRDIEEIAAYSGLPVYVKGP-Q-----CPEDADRALKAGAS 252 (368)
T ss_pred ---CEEECCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEECC-C-----CHHHHHHHHHCCCC
T ss_conf ---73611556033310788767740666665541157810089997217983686078-8-----86689999972886
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf 99980665553234577544632211356454246899999997408974899967889999999999839997545278
Q gi|254780434|r 239 GIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSA 318 (362)
Q Consensus 239 Giv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Ta 318 (362)
||=++|- ..+...| -|-|-+.+.++.++++.++||+=--||..|+++++-|..|||+|-++.-
T Consensus 253 GIWV~NH----------G~RQl~~-------~PaaFD~L~~vAE~V~~rVPIVFDSGvRRG~Hv~KALASGAD~VAlGRP 315 (368)
T TIGR02708 253 GIWVTNH----------GGRQLDG-------GPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRP 315 (368)
T ss_pred EEEEECC----------CCCCCCC-------CCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEECCCH
T ss_conf 2576047----------7502367-------8752000699999852855668508843257899987235644301323
Q ss_pred HHCC----C----HHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHH
Q ss_conf 7706----9----789999999999999983899778961697526
Q gi|254780434|r 319 MIYE----G----ISLPKRIIQGLSDFLNKENEVNFENIRGSYTEY 356 (362)
Q Consensus 319 li~~----G----p~~~~~I~~~L~~~l~~~G~~si~e~iG~~~~~ 356 (362)
.+|- | ..++..++++|+.-|+--|-.+|+|+.+-++.+
T Consensus 316 v~yGLAlGG~~G~~~V~~~l~~~L~~VMQL~G~Q~i~D~K~~~L~~ 361 (368)
T TIGR02708 316 VIYGLALGGSVGARQVLEYLNKELKRVMQLTGTQTIEDVKGLDLRH 361 (368)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCC
T ss_conf 5666550102218999999998877776413875156532141333
No 54
>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=99.24 E-value=2.5e-10 Score=89.37 Aligned_cols=90 Identities=17% Similarity=0.304 Sum_probs=68.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 51786505777748889999987644982999806655532345775446322113564542468999999974089748
Q gi|254780434|r 210 VPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIA 289 (362)
Q Consensus 210 ~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~ 289 (362)
+.++..++ + .+-++.++++|+|+|++-+. +.||-.|...-.....++.++++.+ ++|
T Consensus 138 ~~v~~~v~---s----~~~A~~a~~~G~D~iV~qG~--------------eAGGH~G~~~~~~~~~L~~~v~~~~--~iP 194 (330)
T pfam03060 138 TKVIPTVS---S----AKEARKAEAAGADAVVAQGP--------------EAGGHRGTEVGTGTFLLVPTVVDAV--DIP 194 (330)
T ss_pred CEEEEECC---C----HHHHHHHHHCCCCEEEEECC--------------CCCCCCCCCCCCCHHHHHHHHHHHC--CCC
T ss_conf 98999818---9----99999999819998999667--------------6677788877730777789999871--697
Q ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 999678899999999998399975452787706
Q gi|254780434|r 290 IIGTGGISSTKDALDKIMAGANLIQLYSAMIYE 322 (362)
Q Consensus 290 IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~ 322 (362)
||+.|||.+++|+...+.+||+.||++|.|+--
T Consensus 195 vIaAGGI~dg~~iaaalalGA~gV~mGTrFlat 227 (330)
T pfam03060 195 VIAAGGIADGRGIAAALALGAEGVQIGTRFLAT 227 (330)
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECCEEEEC
T ss_conf 785266289999999996799899971300115
No 55
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.22 E-value=5.3e-09 Score=80.46 Aligned_cols=290 Identities=17% Similarity=0.152 Sum_probs=160.2
Q ss_pred HCCCCCCCCCCEEEECCEECCCCEEECCCCCCC-HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEEC
Q ss_conf 104678896311688873359974853468886-7798887403675241020013687899886268842555410000
Q gi|254780434|r 35 SFFPVHSDPRLNTKVAGISLSNPLGMAAGYDKN-AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKL 113 (362)
Q Consensus 35 ~~~~~~~~~~L~~~~~Gl~~~nPiglAaG~dk~-~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~ 113 (362)
....+..++.-..+++|-++.+|+|.|||+-+. +.-+-...-.|.-|+|.|||-.--..-=|||++- .+|++. |--
T Consensus 32 ~~~fy~~~~~~~~~~fg~~~~tp~GPAaGPhtQlaQNiv~syl~G~Rf~ElKTvQ~~d~~ei~kPCI~--a~de~y-N~E 108 (1032)
T PRK09853 32 EQQFYSPVKGKTISLFGETCATPVGPAAGPHTQLAQNIVTSYLTGGRFIELKTVQILDRLELEKPCID--AEDECF-NTE 108 (1032)
T ss_pred HHHCEECCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCC--CCCCEE-EEE
T ss_conf 77632079996550001237888887889548999999999974561578776776144436777636--566234-102
Q ss_pred C-----CCCCCHHHHH-----HHHHHH---H---HCCCCCCEEECCCCC--HHHHHHHHHHHHHHC--------------
Q ss_conf 2-----4777778899-----987641---0---001210001104542--467887765554206--------------
Q gi|254780434|r 114 G-----FNNAGYHTVF-----SRLSKI---Q---PTSPIGINLGANKDS--KDFILDYVSGIRLFF-------------- 161 (362)
Q Consensus 114 G-----l~N~G~~~~~-----~~l~~~---~---~~~pi~vsI~~~~~s--~~~~~dy~~~~~~~~-------------- 161 (362)
+ ++----||++ .-|.+. . .+...-.|+|++-+. ...+++|.+.|+...
T Consensus 109 WStEl~v~~a~~EYikaw~~l~~l~~~~~~~~~~~~f~fnmSVGYdl~GIks~kv~~fi~~m~das~~~~~~~~~~~l~~ 188 (1032)
T PRK09853 109 WSTEFTLLKAYDEYLKAWFALHLLEKEFQPSDEGKSFIFNMSVGYDLEGIKSPPMQQFIDNMMDASDHPIFAEYRDTLNK 188 (1032)
T ss_pred CCCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 13001207889999999999999999848888787459974312074545766689999986633147799999999998
Q ss_pred ------CC-CCEEEE----------ECCCC--CCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC--
Q ss_conf ------75-526983----------03336--5322110000--2343211112244455655312688517865057--
Q gi|254780434|r 162 ------TI-ASYFTI----------NISSP--NTPGLRSLQK--KKNLERLLIHVMQTREEEKIKTGKFVPIFLKISP-- 218 (362)
Q Consensus 162 ------~~-aD~iEi----------NiSCP--Nt~g~~~~~~--~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsP-- 218 (362)
.. ..++|- -||.- |+--+..||. ++.++.+..-+.+ .+++-.|+|+-|
T Consensus 189 ~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~TlST~HGCpp~EIe~I~~yll~---------ek~l~tfiK~NpTl 259 (1032)
T PRK09853 189 LLDDFAFLAREGLQEKRESLQALPARISPSMCHSVTLSTMHGCPPHEIEAICRYMLE---------EKGLNTFVKLNPTL 259 (1032)
T ss_pred HHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHCCCEEEHHCCCCCHHHHHHHHHHHHH---------CCCCCEEEEECCCC
T ss_conf 877776422666433322100223467902217465320369898999999999985---------05776688517420
Q ss_pred ---------------------------CCCHHHHHHHH----HHHHHCCC-CEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---------------------------77748889999----98764498-29998066555323457754463221135
Q gi|254780434|r 219 ---------------------------DLSEEELDDIA----VEVLSHKV-EGIIVSNTTLSRKGVQCSDNHEQDGGLSG 266 (362)
Q Consensus 219 ---------------------------d~~~~~i~~ia----~~a~~~g~-dGiv~~NT~~~~~~~~~~~~~~~~GGlSG 266 (362)
|++.++...+. +.+.+.|. -|+-++||..-. ......+.+.==|||
T Consensus 260 LGy~~~r~~ld~~G~dyi~~~~~~F~~Dlq~~~a~~ml~rL~~la~~~~l~fGvKltNT~~v~--~~~~~lP~~eMYmSG 337 (1032)
T PRK09853 260 LGYKRVREILDVCGFDYIGLKEESFDHDLQLTDAVEMLERLMALAKEKSLGFGVKLTNTLGTI--NNKGELPGEEMYMSG 337 (1032)
T ss_pred CCHHHHHHHHHHCCCCEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEE--ECCCCCCCCCCCCCC
T ss_conf 058999999986098437417565333343567999999999999972965658870430056--126879963320358
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-CCHHHHHHHHHHHHHHHH
Q ss_conf 6454246899999997408974899967889999999999839997545278770-697899999999999999
Q gi|254780434|r 267 SPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY-EGISLPKRIIQGLSDFLN 339 (362)
Q Consensus 267 ~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~-~Gp~~~~~I~~~L~~~l~ 339 (362)
++|+|++..+..++++..++++||.=+||+.- ....+-+.+|-.-|-++|-+.- -|+.-...+.++|...+.
T Consensus 338 r~L~plsi~~a~~l~~~f~g~l~iSysgGad~-~Ni~~i~~~gi~piT~at~lLkpgGy~r~~q~a~~l~~~~~ 410 (1032)
T PRK09853 338 RALFPLSINLAAKLSRAFDGKLPISYSGGASQ-FNIRDIFDTGIRPITMATDLLKPGGYLRLSQCARELEGSDA 410 (1032)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCH-HHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 85620158999999997099751366467542-25999997298500331021687627999999999874023
No 56
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.18 E-value=3.4e-08 Score=75.07 Aligned_cols=243 Identities=19% Similarity=0.276 Sum_probs=141.1
Q ss_pred CCCCCCCEEEECC-EECCCCEEECCCCCC--CHHHHHHHHHCC-CCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECC
Q ss_conf 7889631168887-335997485346888--677988874036-752410200136878998862688425554100002
Q gi|254780434|r 39 VHSDPRLNTKVAG-ISLSNPLGMAAGYDK--NAEVPIELLKLG-FGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLG 114 (362)
Q Consensus 39 ~~~~~~L~~~~~G-l~~~nPiglAaG~dk--~~~~~~~l~~~G-~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~G 114 (362)
.+++.+|++++.. ++|.-|| +||-.|+ +.++...+...| +|.+ +|
T Consensus 17 ~r~~Vdl~~~~~~~~~l~iPI-issnMDtV~~~~mA~~la~~Gglgvl------------------hr------------ 65 (325)
T cd00381 17 LPSEVDLSTKLTKNITLNIPL-VSAPMDTVTESEMAIAMARLGGIGVI------------------HR------------ 65 (325)
T ss_pred CHHHCEEEEEECCCCCCCCCE-EECCCCCCCCHHHHHHHHHCCCEEEE------------------EC------------
T ss_conf 888926768841881448988-86788875889999999977996899------------------43------------
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 47777788999876410001210001104542467887765554206755269830333653221100002343211112
Q gi|254780434|r 115 FNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIH 194 (362)
Q Consensus 115 l~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~ 194 (362)
+.-++...+.+++.+....++++|+.+ ++..+.... .+...+|++.|.++ |. ..+.+.+.+..
T Consensus 66 --~~~~e~~~~~v~~vk~~~~v~aaig~~---~~~~~r~~~---l~~ag~d~i~IDvA--hG-------~~~~~~~~ik~ 128 (325)
T cd00381 66 --NMSIEEQAEEVRKVKGRLLVGAAVGTR---EDDKERAEA---LVEAGVDVIVIDSA--HG-------HSVYVIEMIKF 128 (325)
T ss_pred --CCCHHHHHHHHHHHHCCEEEEEEECCC---HHHHHHHHH---HHHCCCCEEEEECH--HC-------CCHHHHHHHHH
T ss_conf --588899999999750476999997668---628999999---99769989998700--03-------45889999999
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 24445565531268851786505777748889999987644982999806655532345775446322113564542468
Q gi|254780434|r 195 VMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKST 274 (362)
Q Consensus 195 v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al 274 (362)
++ +...++||++- |..+ .+.++.+.++|+|+|-+.=-..+ .++-....+. |.|- ..++
T Consensus 129 ir--------~~~p~~~IiaG---NV~T---~e~a~~L~~~GaD~vkVGiG~GS---~CtTr~~tGv----G~Pq-~sai 186 (325)
T cd00381 129 IK--------KKYPNVDVIAG---NVVT---AEAARDLIDAGADGVKVGIGPGS---ICTTRIVTGV----GVPQ-ATAV 186 (325)
T ss_pred HH--------HHCCCCCEEEC---CCCC---HHHHHHHHHCCCCEEEECCCCCC---CCCCCCCCCC----CCCH-HHHH
T ss_conf 99--------76899756864---5668---99999998669989997575777---7666010178----8745-8899
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-------------------CC------------
Q ss_conf 99999997408974899967889999999999839997545278770-------------------69------------
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY-------------------EG------------ 323 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~-------------------~G------------ 323 (362)
.-.+..++.+ .+|||+-|||.+.-|+.+-|.+|||+|++++-|.- .|
T Consensus 187 ~~~a~~~~~~--~v~iiaDGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~EsPG~~~~~~g~~~k~y~Gm~S~~a~~~~~~ 264 (325)
T cd00381 187 ADVAAAARDY--GVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGG 264 (325)
T ss_pred HHHHHHHHCC--CCCEEECCCCCCHHHHHHHHHCCCCEEEECCHHCCCCCCCCCEEEECCCEEEEEECCCCHHHHCCCCC
T ss_conf 9999976344--98589448733107888887528878984621046666896158763827889978765433165776
Q ss_pred --------------------------HHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
Q ss_conf --------------------------789999999999999983899778961697
Q gi|254780434|r 324 --------------------------ISLPKRIIQGLSDFLNKENEVNFENIRGSY 353 (362)
Q Consensus 324 --------------------------p~~~~~I~~~L~~~l~~~G~~si~e~iG~~ 353 (362)
...+.++..+|+.-|..-|..+|.|+.-..
T Consensus 265 ~~~~~~~~~~~~~eG~~~~v~~~g~v~~~~~~l~gglrs~m~y~Ga~~l~e~~~~~ 320 (325)
T cd00381 265 DRYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKA 320 (325)
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCC
T ss_conf 54345555101489638998678867889999999998987325867399997578
No 57
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.17 E-value=4.2e-09 Score=81.16 Aligned_cols=185 Identities=15% Similarity=0.248 Sum_probs=114.3
Q ss_pred CCCEEECCCCC--CCHHHHHHHHHCC-CCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99748534688--8677988874036-75241020013687899886268842555410000247777788999876410
Q gi|254780434|r 55 SNPLGMAAGYD--KNAEVPIELLKLG-FGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ 131 (362)
Q Consensus 55 ~nPiglAaG~d--k~~~~~~~l~~~G-~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~ 131 (362)
+-||+ .++.+ .+.++..+..++| +|++-.+.. -.|.+.+.+++.+
T Consensus 2 ~~PIi-~a~M~~vs~~~LaaAvs~aGglG~l~~~~~-------------------------------~~~~l~~~i~~~~ 49 (236)
T cd04730 2 RYPII-QAPMAGVSTPELAAAVSNAGGLGFIGAGYL-------------------------------TPEALRAEIRKIR 49 (236)
T ss_pred CCCEE-CCCCCCCCCHHHHHHHHHCCCEEEECCCCC-------------------------------CHHHHHHHHHHHH
T ss_conf 74868-788778786999999996898558578889-------------------------------9999999999999
Q ss_pred H--CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 0--01210001104542467887765554206755269830333653221100002343211112244455655312688
Q gi|254780434|r 132 P--TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKF 209 (362)
Q Consensus 132 ~--~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~ 209 (362)
. +.|+++|+...... ...+++.+.+.+. .++++++-.. .+. ++++.++. ..
T Consensus 50 ~~~~~pfgvnl~~~~~~-~~~~~~~~~~~~~--~v~~v~~~~g-----------~p~---~~v~~l~~----------~g 102 (236)
T cd04730 50 ALTDKPFGVNLLVPSSN-PDFEALLEVALEE--GVPVVSFSFG-----------PPA---EVVERLKA----------AG 102 (236)
T ss_pred HHCCCCEEECCCCCCCC-CCHHHHHHHHHHC--CCCEEEECCC-----------CCH---HHHHHHHH----------CC
T ss_conf 74699724433246776-3689999999976--9999998798-----------978---99999998----------29
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 51786505777748889999987644982999806655532345775446322113564542468999999974089748
Q gi|254780434|r 210 VPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIA 289 (362)
Q Consensus 210 ~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~ 289 (362)
+.++.+.+ + .+.++.+.+.|+|+|++-.. +.||.-|... ...+.++.++++.+ ++|
T Consensus 103 ~~v~~~v~---s----~~~A~~a~~~GaD~iv~qG~--------------eAGGH~g~~~-~~~~~lv~~v~~~~--~ip 158 (236)
T cd04730 103 IKVIPTVT---S----VEEARKAEAAGADALVAQGA--------------EAGGHRGTFD-IGTFALVPEVRDAV--DIP 158 (236)
T ss_pred CEEEEECC---C----HHHHHHHHHCCCCEEEEECC--------------CCCCCCCCCC-CCHHHHHHHHHHHH--CCC
T ss_conf 98999589---8----99999999818998999777--------------7777889875-55677999999982--986
Q ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 999678899999999998399975452787706
Q gi|254780434|r 290 IIGTGGISSTKDALDKIMAGANLIQLYSAMIYE 322 (362)
Q Consensus 290 IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~ 322 (362)
||+.|||.+++|+...+.+||+.||++|.|+.-
T Consensus 159 viaAGGI~~g~~i~aal~lGA~gV~~GTrfl~t 191 (236)
T cd04730 159 VIAAGGIADGRGIAAALALGADGVQMGTRFLAT 191 (236)
T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEECCHHHHC
T ss_conf 896546277899999998089799955385708
No 58
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.14 E-value=3.8e-09 Score=81.45 Aligned_cols=186 Identities=17% Similarity=0.309 Sum_probs=114.1
Q ss_pred EECCEECCCCEEECCCC--CCCHHHHHHHHHCC-CCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHH
Q ss_conf 88873359974853468--88677988874036-7524102001368789988626884255541000024777778899
Q gi|254780434|r 48 KVAGISLSNPLGMAAGY--DKNAEVPIELLKLG-FGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVF 124 (362)
Q Consensus 48 ~~~Gl~~~nPiglAaG~--dk~~~~~~~l~~~G-~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~ 124 (362)
+.+|+ +.||+. ++. -.+.++..+..++| +|++-.+.. ..|.+.
T Consensus 6 ~~lgi--~~PIiq-apM~~vs~~~La~AVs~aGglG~l~~~~~-------------------------------~~e~l~ 51 (307)
T TIGR03151 6 DLLGI--EYPIFQ-GGMAWVATGSLAAAVSNAGGLGIIGAGNA-------------------------------PPDVVR 51 (307)
T ss_pred HHHCC--CCCEEC-CCCCCCCCHHHHHHHHHCCCEEEECCCCC-------------------------------CHHHHH
T ss_conf 97689--949787-88777787899999980898416678889-------------------------------999999
Q ss_pred HHHHHHH--HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9876410--00121000110454246788776555420675526983033365322110000234321111224445565
Q gi|254780434|r 125 SRLSKIQ--PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEE 202 (362)
Q Consensus 125 ~~l~~~~--~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~ 202 (362)
+.+++.+ -+.|++||+....+. .++..+.+ +...++++...+..|. +++..+.+
T Consensus 52 ~~i~~~~~~td~P~gvnl~~~~~~---~~~~~~~~--~e~~v~vv~~~~G~p~--------------~~~~~~~~----- 107 (307)
T TIGR03151 52 KEIRKVKELTDKPFGVNIMLLSPF---VDELVDLV--IEEKVPVVTTGAGNPG--------------KYIPRLKE----- 107 (307)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCC---HHHHHHHH--HHHCCCCEEECCCCCH--------------HHHHHHHH-----
T ss_conf 999999985279860433323888---99999999--8608982472799968--------------99999998-----
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 53126885178650577774888999998764498299980665553234577544632211356454246899999997
Q gi|254780434|r 203 KIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQ 282 (362)
Q Consensus 203 ~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~ 282 (362)
..++++...+ + ...++.+++.|+|+|++-.+ +.||--|. + ....++.+++.
T Consensus 108 -----~g~~v~~~v~---s----~~~A~~a~~~G~D~iV~qG~--------------EAGGH~G~-~--~~~~Lvp~v~d 158 (307)
T TIGR03151 108 -----NGVKVIPVVA---S----VALAKRMEKAGADAVIAEGM--------------ESGGHIGE-L--TTMALVPQVVD 158 (307)
T ss_pred -----CCCEEEEEEC---C----HHHHHHHHHCCCCEEEEECC--------------CCCCCCCC-C--CHHHHHHHHHH
T ss_conf -----5997999818---9----99999999649999997455--------------44687786-4--37877999985
Q ss_pred HCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 4089748999678899999999998399975452787706
Q gi|254780434|r 283 RVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYE 322 (362)
Q Consensus 283 ~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~ 322 (362)
.+ ++|+|+.|||.+++++...+.+||+.||++|.|+--
T Consensus 159 ~~--~iPViAAGGI~dgr~iaaalalGA~gV~mGTrFlat 196 (307)
T TIGR03151 159 AV--SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCA 196 (307)
T ss_pred HC--CCCEEEECCCCCCHHHHHHHHCCCCEEEECHHHHCC
T ss_conf 04--686576411336588999997188478744197718
No 59
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.12 E-value=1.1e-08 Score=78.32 Aligned_cols=254 Identities=17% Similarity=0.207 Sum_probs=138.5
Q ss_pred EEEECCEECCCCEEECCC---C-------CCCHHHHHHHHHCCCCEEECCCCCCC-CCCCCCCCCEEEEECCCCCEEECC
Q ss_conf 168887335997485346---8-------88677988874036752410200136-878998862688425554100002
Q gi|254780434|r 46 NTKVAGISLSNPLGMAAG---Y-------DKNAEVPIELLKLGFGFVEIGTVTPH-PQAGNPRPRVFRLTKDRAIINKLG 114 (362)
Q Consensus 46 ~~~~~Gl~~~nPiglAaG---~-------dk~~~~~~~l~~~G~G~v~~ktit~~-p~~GNp~PR~~r~~~~~~iiN~~G 114 (362)
+.++.+++++|.|+.|+= + |...++......-|+|.++++.+... |..+. .|+...+..++ .+
T Consensus 4 Pi~Ig~~~lkNRiv~apm~~~~~~~G~~t~~~~~yy~~rA~GG~Gliite~~~V~~~~~~~-~~~~~~~~~d~-~i---- 77 (361)
T cd04747 4 PFTLKGLTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASG-DPNVPRFHGED-AL---- 77 (361)
T ss_pred CEEECCEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCC-CCCCCCCCCHH-HH----
T ss_conf 8358999988852887748783889989999999999997689610797067105621358-99877758999-99----
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEE--------------------ECC-----------CCC----HHHHHHHHHHHHH
Q ss_conf 47777788999876410001210001--------------------104-----------542----4678877655542
Q gi|254780434|r 115 FNNAGYHTVFSRLSKIQPTSPIGINL--------------------GAN-----------KDS----KDFILDYVSGIRL 159 (362)
Q Consensus 115 l~N~G~~~~~~~l~~~~~~~pi~vsI--------------------~~~-----------~~s----~~~~~dy~~~~~~ 159 (362)
+|+..+.+.+.+. +..+++.| ..+ .-| ++.+++|...++.
T Consensus 78 ---~~~r~la~avH~~--G~~~~~QL~H~G~~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~mt~eeI~~ii~~f~~AA~r 152 (361)
T cd04747 78 ---AGWKKVVDEVHAA--GGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAAD 152 (361)
T ss_pred ---HHHHHHHHHHHHC--CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf ---9999999999976--99798700035666666678888988668756667889888879999999999999999999
Q ss_pred HC-CCCCEEEE---------ECCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC--------
Q ss_conf 06-75526983---------0333653--2211000023432111122444556553126885178650577--------
Q gi|254780434|r 160 FF-TIASYFTI---------NISSPNT--PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPD-------- 219 (362)
Q Consensus 160 ~~-~~aD~iEi---------NiSCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd-------- 219 (362)
+. .+.|.+|| .+-||.+ ..-+...+.++=.+++..+.+.... ....+.||.+|+|+.
T Consensus 153 A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGSlENR~Rf~~Eii~aVr~---~vg~df~vg~Ris~~~~~~~~~~ 229 (361)
T cd04747 153 ARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRA---AVGPDFPIILRFSQWKQQDYTAR 229 (361)
T ss_pred HHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHH---HHCCCCEEEEEECCCCCCCCCCC
T ss_conf 998399989951044658998358743889887899879847369999999999---72998759999677657676655
Q ss_pred --CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC-
Q ss_conf --77488899999876449829998066555323457754463221135645424689999999740897489996788-
Q gi|254780434|r 220 --LSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGI- 296 (362)
Q Consensus 220 --~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI- 296 (362)
.+.+++..+++.+++.|+|.+-++.... ..+. ..|..+ ....++++.. .+|.|.+|++
T Consensus 230 ~~~~~ee~~~~~~~l~~~GvD~i~~s~~~~-----~~p~-------~~~~~~-----~~~~~~k~~~--~~p~~~~g~~~ 290 (361)
T cd04747 230 LADTPDELEALLAPLVDAGVDIFHCSTRRF-----WEPE-------FEGSEL-----NLAGWTKKLT--GLPTITVGSVG 290 (361)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCC-----CCCC-------CCCCCC-----CHHHHHHHHC--CCCEEEECCCH
T ss_conf 679999999999999977999898413445-----6765-------677744-----4889988862--89758644410
Q ss_pred -----------------CCHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHH
Q ss_conf -----------------9999999999839-997545278770697899999999
Q gi|254780434|r 297 -----------------SSTKDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQG 333 (362)
Q Consensus 297 -----------------~s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~ 333 (362)
.+.+++.+.|..| ||+|.++.+++-+ |.+++++.+|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~e~ae~~l~~G~~D~V~~gR~llaD-P~~v~K~~~G 344 (361)
T cd04747 291 LDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSD-PAWVAKVREG 344 (361)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHCC
T ss_conf 35677777512454477799999999986994138975999975-4499999859
No 60
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.08 E-value=1.2e-06 Score=64.49 Aligned_cols=254 Identities=18% Similarity=0.160 Sum_probs=137.3
Q ss_pred EEEECCEECCCCEEECC--------CCCCC--HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCC
Q ss_conf 16888733599748534--------68886--779888740367524102001368789988626884255541000024
Q gi|254780434|r 46 NTKVAGISLSNPLGMAA--------GYDKN--AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGF 115 (362)
Q Consensus 46 ~~~~~Gl~~~nPiglAa--------G~dk~--~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl 115 (362)
+.++-|++|+|.|++|- |+..+ ...+-....-|+|.|.+-.....|. | |+ .+ +..|+
T Consensus 407 P~~lr~ltL~NRIvvSPMcqYsa~dG~ptd~Hl~Hyg~rA~gGaGLIi~EaTaVsp~-G----Ri--tp------~~~GL 473 (770)
T PRK08255 407 PFRLRGLTLKNRIVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPE-G----RI--TP------GCPGL 473 (770)
T ss_pred CEEECCEEEECCEEECCHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCC-C----CC--CC------CCCCC
T ss_conf 875666752065675236535278998980899999999707878799876775676-5----78--99------88775
Q ss_pred CCCCH----HHHHHHHHHH-------------H----------HCCC--------CCCEEECCC---C-----C----HH
Q ss_conf 77777----8899987641-------------0----------0012--------100011045---4-----2----46
Q gi|254780434|r 116 NNAGY----HTVFSRLSKI-------------Q----------PTSP--------IGINLGANK---D-----S----KD 148 (362)
Q Consensus 116 ~N~G~----~~~~~~l~~~-------------~----------~~~p--------i~vsI~~~~---~-----s----~~ 148 (362)
=|+.- ..+.+-+... + .+.| +..|--... . + .+
T Consensus 474 w~d~q~~~~krivd~vH~~~~a~i~iQL~HaGRKast~~~w~g~~~P~~~g~W~~vapS~ip~~~~~~~Pr~mt~~eI~~ 553 (770)
T PRK08255 474 YNDEQEAAWKRIVDFVHANSDAKIGIQLGHAGRKGSTRLGWEGIDQPLEEGNWPLISASPLPYLPGSQVPREMTRADMDR 553 (770)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 59899999999999999636984798722378786555787778887876898724898887589998875689999999
Q ss_pred HHHHHHHHHHHH-CCCCCEEEE---------ECCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 788776555420-675526983---------033365--32211000023432111122444556553126885178650
Q gi|254780434|r 149 FILDYVSGIRLF-FTIASYFTI---------NISSPN--TPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKI 216 (362)
Q Consensus 149 ~~~dy~~~~~~~-~~~aD~iEi---------NiSCPN--t~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKL 216 (362)
-+++|...++.. ..+-|.+|| .+-||- ...-+...+-++--+++..+.++... .-...+|++|.|
T Consensus 554 vv~~F~~AA~rA~~AGFD~IEiH~AHGYLl~qFLSPlsN~RtDeYGGsleNR~Rf~lEV~~aVR~---~~p~~~Pl~vRi 630 (770)
T PRK08255 554 VRDQFVAATRRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRA---VWPADKPMSVRI 630 (770)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HCCCCCCEEEEE
T ss_conf 99999999999998399989995234555887538644677543578888777889999999998---678988669998
Q ss_pred CCC------CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 577------77488899999876449829998066555323457754463221135645424689999999740897489
Q gi|254780434|r 217 SPD------LSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAI 290 (362)
Q Consensus 217 sPd------~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~I 290 (362)
|.. .+.++-.++++.+++.|+|-|-++-.-. .+.....+ |+. +. +-.-..+|+.. ++|+
T Consensus 631 SatDw~~gG~t~edsv~la~~l~~~GvD~IdvSsGg~------~~~~~p~~----g~~-yQ--vpfA~~Ir~e~--~i~t 695 (770)
T PRK08255 631 SAHDWVEGGNTPDDAVEIARAFKAAGADMIDVSSGQV------SKDEKPVY----GRM-YQ--TPFADRIRNEA--GIAT 695 (770)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC------CCCCCCCC----CCC-CC--HHHHHHHHHHC--CCCE
T ss_conf 5102568999999999999999974998999578888------86677888----876-56--69999999875--9978
Q ss_pred EEECCCCCHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHH
Q ss_conf 9967889999999999839-9975452787706978999999
Q gi|254780434|r 291 IGTGGISSTKDALDKIMAG-ANLIQLYSAMIYEGISLPKRII 331 (362)
Q Consensus 291 Ig~GGI~s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~ 331 (362)
|+||.|.++++|-+-+.+| ||+|.++.++++. |.-.-+-.
T Consensus 696 ~AVG~I~~p~~Ae~Il~~GrADlValgR~~L~d-P~W~l~aA 736 (770)
T PRK08255 696 IAVGAISEADHVNSIIAAGRADLCALARPHLAD-PAWTLHEA 736 (770)
T ss_pred EEECCCCCHHHHHHHHHCCCCCEEEECHHHHCC-CCHHHHHH
T ss_conf 996188999999999976998875247776519-95099999
No 61
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.07 E-value=7.8e-08 Score=72.62 Aligned_cols=160 Identities=20% Similarity=0.177 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHC-CCCCEEEEE---------CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 67887765554206-755269830---------333653--221100002343211112244455655312688517865
Q gi|254780434|r 148 DFILDYVSGIRLFF-TIASYFTIN---------ISSPNT--PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK 215 (362)
Q Consensus 148 ~~~~dy~~~~~~~~-~~aD~iEiN---------iSCPNt--~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK 215 (362)
+.+++|.+.++.+. .+.|.+||. +-||.+ ..-+...+-++=-+++..+.+..... ...-+|.+|
T Consensus 156 ~ii~~f~~AA~rA~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSleNR~Rf~~Eii~aVr~a----vg~d~v~vR 231 (362)
T PRK10605 156 GIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNHRTDQYGGSVENRARLVLEVVDAGIAE----WGADRIGIR 231 (362)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH----HCCCCEEEE
T ss_conf 9999999999999983999899702473699973897667898878997899988999999999997----398737999
Q ss_pred CCCCC----------CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 05777----------74888999998764498299980665553234577544632211356454246899999997408
Q gi|254780434|r 216 ISPDL----------SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVG 285 (362)
Q Consensus 216 LsPd~----------~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~ 285 (362)
++|.. ..++...+++.+.+.|+|-+.++.. . ...|.+. ....-+.+++.+
T Consensus 232 is~~~~~~~~~~g~~~~~~~~~~~~~l~~~gv~~l~~s~p----------~------~~~~~~~---~~~~~~~ik~~v- 291 (362)
T PRK10605 232 ISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEP----------D------WAGGEPY---SDAFREKVRARF- 291 (362)
T ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCC----------C------CCCCCCC---CHHHHHHHHHHC-
T ss_conf 7266565666578876899999999998629749997268----------5------5689875---199999999876-
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 974899967889999999999839-9975452787706978999999999
Q gi|254780434|r 286 PKIAIIGTGGISSTKDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 286 ~~i~IIg~GGI~s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
++|+|++|++ |.+.|.+.|..| ||+|.++.+++-. |.+++++.++.
T Consensus 292 -~~PVi~~G~~-tpe~Ae~~l~~G~aDlV~~gR~llAD-Pd~~~K~~~g~ 338 (362)
T PRK10605 292 -HGPIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIAN-PDLVARLQRKA 338 (362)
T ss_pred -CCCEEECCCC-CHHHHHHHHHCCCCCEEEEHHHHHHC-CCHHHHHHCCC
T ss_conf -9978976899-99999999988998798100687759-45899985799
No 62
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=99.06 E-value=1.6e-07 Score=70.43 Aligned_cols=128 Identities=17% Similarity=0.255 Sum_probs=71.5
Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 20675526983033365322110000234321111224445565531268851786505777748889999987644982
Q gi|254780434|r 159 LFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVE 238 (362)
Q Consensus 159 ~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~d 238 (362)
.+..++|++.|..+-=| ...+- +.++..+ +...++||++- |..+ .+-++.+.++|+|
T Consensus 231 Lv~aGvDvivIDtAhGh---------s~~vi---~~ik~ik-----~~~p~~~iIaG---NVaT---~e~a~~Li~aGAD 287 (467)
T pfam00478 231 LVEAGVDVIVIDSAHGH---------SEYVL---EMIKWIK-----KKYPDLDVIAG---NVVT---AEAARELIDAGAD 287 (467)
T ss_pred HHHCCCCEEEEECCCCC---------CHHHH---HHHHHHH-----HCCCCCCEEEE---EECC---HHHHHHHHHHCCC
T ss_conf 98769988997344544---------18899---9999987-----40787737851---0058---9999999970777
Q ss_pred EEEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECH
Q ss_conf 9998066555323-457754463221135645424689999999740897489996788999999999983999754527
Q gi|254780434|r 239 GIIVSNTTLSRKG-VQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYS 317 (362)
Q Consensus 239 Giv~~NT~~~~~~-~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~T 317 (362)
+|-+.=- ++ +++..... |. |.| .-.|..-+++.++.+ .+|||+-|||.+.-|+.+-|.||||+|++++
T Consensus 288 ~vKVGiG----pGSiCTTR~v~---Gv-G~P-Q~tAv~~~a~~a~~~--~vpiIADGGi~~sGDi~KAlaaGAd~VMlGs 356 (467)
T pfam00478 288 AVKVGIG----PGSICTTREVA---GV-GRP-QLTAVYEVADAARKL--GVPVIADGGIRYSGDIAKALAAGASAVMLGS 356 (467)
T ss_pred EEEECCC----CCCCCCCCCCC---CC-CCC-HHHHHHHHHHHHHHC--CCEEEECCCCCCHHHHHHHHHCCCCEEEECH
T ss_conf 5775566----88656564203---66-775-087999999998656--9879944762330489999872898898772
Q ss_pred HHH
Q ss_conf 877
Q gi|254780434|r 318 AMI 320 (362)
Q Consensus 318 ali 320 (362)
-|.
T Consensus 357 llA 359 (467)
T pfam00478 357 LLA 359 (467)
T ss_pred HHC
T ss_conf 225
No 63
>KOG2333 consensus
Probab=98.98 E-value=2.9e-08 Score=75.52 Aligned_cols=202 Identities=15% Similarity=0.197 Sum_probs=122.3
Q ss_pred HHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC-----CCCCC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 7641000121000110454246788776555420675526983033365-----32211-00002343211112244455
Q gi|254780434|r 127 LSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPN-----TPGLR-SLQKKKNLERLLIHVMQTRE 200 (362)
Q Consensus 127 l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPN-----t~g~~-~~~~~~~l~~~l~~v~~~~~ 200 (362)
++++......||.+.+++. +.+..-++++.+-.+ +|++.||+.||= -.++. .+..+..+...+.+....
T Consensus 313 lkRH~sEdiFGVQlag~~p--dt~~kaaq~i~e~~~-VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~v-- 387 (614)
T KOG2333 313 LKRHQSEDIFGVQLAGSKP--DTAAKAAQVIAETCD-VDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAV-- 387 (614)
T ss_pred HHHCCCCCCEEEEECCCCH--HHHHHHHHHHHHHCC-EEEEECCCCCCHHEEECCCCCCHHHCCCHHHHHHHHHHHHH--
T ss_conf 6405766532367426886--889999999986166-00463268997110220677505423818999999999876--
Q ss_pred HHHHHCCCCCEEEEECCCCC--CHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 65531268851786505777--7488899999876-44982999806655532345775446322113564542468999
Q gi|254780434|r 201 EEKIKTGKFVPIFLKISPDL--SEEELDDIAVEVL-SHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIAL 277 (362)
Q Consensus 201 ~~~~~~~~~~Pi~vKLsPd~--~~~~i~~ia~~a~-~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i 277 (362)
...+||-||+---. ...-.++++..+. +.|++++|+-. |..-. . +| +..--..|
T Consensus 388 ------s~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHG----RSRqQ---R------YT----K~AnWdYi 444 (614)
T KOG2333 388 ------SGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHG----RSRQQ---R------YT----KSANWDYI 444 (614)
T ss_pred ------CCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEECC----CHHHH---H------HH----CCCCHHHH
T ss_conf ------05787489984044367613889999986424753377527----20655---3------10----23682789
Q ss_pred HHHHHHCCCCEEEEEECCCCCHHHHHHHHHCC--CCEEEECHHHHCCCHHHHHHHHHHHHHHH--HHCCCCCHHHHHCCC
Q ss_conf 99997408974899967889999999999839--99754527877069789999999999999--983899778961697
Q gi|254780434|r 278 AKIRQRVGPKIAIIGTGGISSTKDALDKIMAG--ANLIQLYSAMIYEGISLPKRIIQGLSDFL--NKENEVNFENIRGSY 353 (362)
Q Consensus 278 ~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aG--As~VQi~Tali~~Gp~~~~~I~~~L~~~l--~~~G~~si~e~iG~~ 353 (362)
.++.+....-+|+||.|-|.|++|-++++.-+ -+-|+|+.+...+ |++|.+|.+.= .|= ...-++=+.+++--.
T Consensus 445 ~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIK-PWIFtEIkeqq-~wD~sSteRldiL~df~nyG 522 (614)
T KOG2333 445 EECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIK-PWIFTEIKEQQ-HWDISSTERLDILKDFCNYG 522 (614)
T ss_pred HHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCCCC-CHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHH
T ss_conf 99997445675267657506489998875359975447861453013-25766566653-27865058999999998622
Q ss_pred CHHHH
Q ss_conf 52664
Q gi|254780434|r 354 TEYWA 358 (362)
Q Consensus 354 ~~~~~ 358 (362)
++||-
T Consensus 523 LeHWG 527 (614)
T KOG2333 523 LEHWG 527 (614)
T ss_pred HHHCC
T ss_conf 33107
No 64
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=98.89 E-value=6.5e-08 Score=73.16 Aligned_cols=180 Identities=15% Similarity=0.173 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 78877655542067552698303336532211000023432111122444556553126885178650577774888999
Q gi|254780434|r 149 FILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDI 228 (362)
Q Consensus 149 ~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~i 228 (362)
.+.++....+..-++.|.+ ||+-- -+..+.+.|..++..+++.. ...||.|||.. ..-+..+
T Consensus 258 KV~~~IA~~R~~~pG~~~I-----SP~pH--HDiysieDLaqlI~dLk~~~--------~~~~I~VKlva---~~~v~~i 319 (485)
T COG0069 258 KVTPEIAKTRGSPPGVGLI-----SPPPH--HDIYSIEDLAQLIKDLKEAN--------PWAKISVKLVA---EHGVGTI 319 (485)
T ss_pred CCCHHHHHHCCCCCCCCCC-----CCCCC--CCCCCHHHHHHHHHHHHHCC--------CCCEEEEEEEC---CCCHHHH
T ss_conf 5798899761899887775-----89974--66569889999999999618--------89706999925---6556778
Q ss_pred HHHHHHCCCCEEEEECC---CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCCCCHHHHH
Q ss_conf 99876449829998066---5553234577544632211356454246899999997--408974899967889999999
Q gi|254780434|r 229 AVEVLSHKVEGIIVSNT---TLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQ--RVGPKIAIIGTGGISSTKDAL 303 (362)
Q Consensus 229 a~~a~~~g~dGiv~~NT---~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~--~~~~~i~IIg~GGI~s~~Da~ 303 (362)
+..+.++++|.|++..- |+.-+.... -..|-|+ ..++..+.+.-. -+..++.|+..||+.|+.|+.
T Consensus 320 aagvakA~AD~I~IdG~~GGTGAsP~~~~--------~~~GiP~-e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVa 390 (485)
T COG0069 320 AAGVAKAGADVITIDGADGGTGASPLTSI--------DHAGIPW-ELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVA 390 (485)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCHHHH--------HCCCCHH-HHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH
T ss_conf 76664046988997589986787856576--------3687079-98899999999975986416999428706789999
Q ss_pred HHHHCCCCEEEECHHHHC-CC--------------------HH----------------HHHHHHHHHHHHHHHCCCCCH
Q ss_conf 999839997545278770-69--------------------78----------------999999999999998389977
Q gi|254780434|r 304 DKIMAGANLIQLYSAMIY-EG--------------------IS----------------LPKRIIQGLSDFLNKENEVNF 346 (362)
Q Consensus 304 e~l~aGAs~VQi~Tali~-~G--------------------p~----------------~~~~I~~~L~~~l~~~G~~si 346 (362)
.-++.|||.|-++|+.+. .| |. ++.-+.+|+.++|...|++++
T Consensus 391 ka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rella~lG~~~l 470 (485)
T COG0069 391 KAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAALGKRSL 470 (485)
T ss_pred HHHHHCCCHHHHCHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99970864552021999985338664415899975034058888763374410899999999999999999998678999
Q ss_pred HHHHCCCCH
Q ss_conf 896169752
Q gi|254780434|r 347 ENIRGSYTE 355 (362)
Q Consensus 347 ~e~iG~~~~ 355 (362)
+|++|..-.
T Consensus 471 ~el~g~~d~ 479 (485)
T COG0069 471 SELIGRTDL 479 (485)
T ss_pred HHHHCCHHH
T ss_conf 997454676
No 65
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=98.84 E-value=2e-07 Score=69.85 Aligned_cols=169 Identities=17% Similarity=0.199 Sum_probs=103.3
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 65554206755269830333653221100002343211112244455655312688517865057777488899999876
Q gi|254780434|r 154 VSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVL 233 (362)
Q Consensus 154 ~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~ 233 (362)
...++.+.++.|.+ ||+. -.++++++.|.+++..+++. ...+||.+|+.-.- ...+++..+.
T Consensus 174 IA~~R~~~~G~d~i-----SP~~--h~~i~s~edl~~~I~~LR~~--------~~~kpVgvKl~~g~---~~~~l~~~~~ 235 (392)
T cd02808 174 IAKIRGIPPGVDLI-----SPPP--HHDIYSIEDLAQLIEDLREA--------TGGKPIGVKLVAGH---GEGDIAAGVA 235 (392)
T ss_pred HHHHCCCCCCCCCC-----CCCC--CCCCCCHHHHHHHHHHHHHH--------CCCCCEEEEECCCC---CHHHHHHHHH
T ss_conf 99880899998877-----9976--56669999999999999972--------89980799968889---8899999999
Q ss_pred HCCCCEEEEECC---CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 449829998066---5553234577544632211356454246899999997--40897489996788999999999983
Q gi|254780434|r 234 SHKVEGIIVSNT---TLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQ--RVGPKIAIIGTGGISSTKDALDKIMA 308 (362)
Q Consensus 234 ~~g~dGiv~~NT---~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~--~~~~~i~IIg~GGI~s~~Da~e~l~a 308 (362)
..++|.|++--. |..-+.. .. ---|-|+.. ++..+.+.-. -+.+++.||++||+.++.|++..+..
T Consensus 236 ~~~~DfItIDG~eGGTGAaP~~----~~----d~~GlP~~~-~l~~~~~~L~~~glr~~i~liasGgl~t~~di~kalaL 306 (392)
T cd02808 236 AAGADFITIDGAEGGTGAAPLT----FI----DHVGLPTEL-GLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALAL 306 (392)
T ss_pred HCCCCEEEEECCCCCCCCCHHH----HH----HCCCCCHHH-HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 6479999960799875414299----99----749973899-99999999997699676379963885747899999986
Q ss_pred CCCEEEECHHHHCC-C--------------------H----------------HHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 99975452787706-9--------------------7----------------8999999999999998389977896
Q gi|254780434|r 309 GANLIQLYSAMIYE-G--------------------I----------------SLPKRIIQGLSDFLNKENEVNFENI 349 (362)
Q Consensus 309 GAs~VQi~Tali~~-G--------------------p----------------~~~~~I~~~L~~~l~~~G~~si~e~ 349 (362)
|||+|-++|++|+- | | ..++.+.+||.++|..-|++|++++
T Consensus 307 GAD~v~~a~~~m~alGCiq~~~C~~~~CP~GiaTqd~~l~~~l~~~~~a~rv~ny~~~~~~el~~~~~a~G~~~~~~l 384 (392)
T cd02808 307 GADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRSLELL 384 (392)
T ss_pred CCCHHHHCHHHHHHHHCHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf 756451056999987479976505998996111379888414686546999999999999999999998579994788
No 66
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=98.82 E-value=6.3e-08 Score=73.23 Aligned_cols=90 Identities=17% Similarity=0.312 Sum_probs=70.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCE
Q ss_conf 5178650577774888999998764498299980665553234577544632211356-454246899999997408974
Q gi|254780434|r 210 VPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGS-PLFLKSTIALAKIRQRVGPKI 288 (362)
Q Consensus 210 ~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~-~i~~~al~~i~~i~~~~~~~i 288 (362)
..++.+++ + ...+..+++.|+|++++-- .+.||--|. ...+-...+|.++++.+.. +
T Consensus 128 ~~v~~~v~---~----~~~A~~~~~~G~d~vI~~g--------------~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~-i 185 (336)
T COG2070 128 IKVIHSVI---T----VREALKAERAGADAVIAQG--------------AEAGGHRGGVDLEVSTFALVPEVVDAVDG-I 185 (336)
T ss_pred CEEEEEEC---C----HHHHHHHHHCCCCEEEECC--------------CCCCCCCCCCCCCCCHHHHHHHHHHHHCC-C
T ss_conf 85898508---8----9999999817998899437--------------76778689988773188899999998548-9
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 899967889999999999839997545278770
Q gi|254780434|r 289 AIIGTGGISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 289 ~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
|+|+.|||.+++++...+..||+.||++|.|+.
T Consensus 186 PViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~ 218 (336)
T COG2070 186 PVIAAGGIADGRGIAAALALGADGVQMGTRFLA 218 (336)
T ss_pred CEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHC
T ss_conf 789876868869999999844168554125421
No 67
>pfam01645 Glu_synthase Conserved region in glutamate synthase. This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.
Probab=98.81 E-value=1.9e-07 Score=69.96 Aligned_cols=147 Identities=16% Similarity=0.218 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 78877655542067552698303336532211000023432111122444556553126885178650577774888999
Q gi|254780434|r 149 FILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDI 228 (362)
Q Consensus 149 ~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~i 228 (362)
.+.+....++.+.++.|.+ ||+. -.++.+++.|..++..+++. ...+||.+||.-- .....+
T Consensus 157 KVt~eIA~~R~~~~G~d~i-----SP~~--h~di~s~edL~~~I~~Lr~~--------~~~~PVgvKl~~~---~~~~~i 218 (367)
T pfam01645 157 KVSPEIARIRGSPPGVGLI-----SPPP--HHDIYSIEDLAQLIYDLKEI--------NPKAPISVKLVSG---HGVGTI 218 (367)
T ss_pred HCCHHHHHHCCCCCCCCCC-----CCCC--CCCCCCHHHHHHHHHHHHHC--------CCCCCEEEEEECC---CCHHHH
T ss_conf 4489999680899998767-----8633--47889999999999999841--------7899459998147---768999
Q ss_pred HHHHHHCCCCEEEEECC---CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HH-HHCCCCEEEEEECCCCCHHHHH
Q ss_conf 99876449829998066---5553234577544632211356454246899999-99-7408974899967889999999
Q gi|254780434|r 229 AVEVLSHKVEGIIVSNT---TLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAK-IR-QRVGPKIAIIGTGGISSTKDAL 303 (362)
Q Consensus 229 a~~a~~~g~dGiv~~NT---~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~-i~-~~~~~~i~IIg~GGI~s~~Da~ 303 (362)
+..+.++++|.|++.-. |..-+....+ --|-|+. .++..+.+ +. .-+.+++.||+.||+.++.|++
T Consensus 219 a~~~aka~~D~I~IdG~eGGTGAaP~~~~d--------~~GlP~~-~~L~~~~~~L~~~glR~~V~liasGgl~t~~Dv~ 289 (367)
T pfam01645 219 AAGVAKAGADIILIDGHDGGTGASPKTSIK--------HAGLPWE-LALAEVHQTLVENGLRDRVSLIADGGLRTGADVA 289 (367)
T ss_pred HHHHHCCCCCEEEECCCCCCCCCCCHHHHH--------HCCCHHH-HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH
T ss_conf 998753678889971789867755488997--------4424699-9999999999870675764999769978889999
Q ss_pred HHHHCCCCEEEECHHHHCC
Q ss_conf 9998399975452787706
Q gi|254780434|r 304 DKIMAGANLIQLYSAMIYE 322 (362)
Q Consensus 304 e~l~aGAs~VQi~Tali~~ 322 (362)
..+..|||+|.++|++|+-
T Consensus 290 ka~aLGAD~v~~gt~~m~A 308 (367)
T pfam01645 290 KAAALGADAVYIGTAALIA 308 (367)
T ss_pred HHHHHCCCHHHHHHHHHHH
T ss_conf 9998565354234799998
No 68
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.80 E-value=3.8e-07 Score=67.98 Aligned_cols=226 Identities=15% Similarity=0.182 Sum_probs=127.8
Q ss_pred CCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHH
Q ss_conf 87335997485346888677988874036752410200136878998862688425554100002477777889998764
Q gi|254780434|r 50 AGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSK 129 (362)
Q Consensus 50 ~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~ 129 (362)
-|..|.+.... | | -.+..+.|.+.|+-.+.+=-+ +.+. .|-....+-+++
T Consensus 20 kg~~~~~~~~~--g-d-P~~~a~~~~~~Gad~lhlvDl------------------d~a~--------~~~~~n~~~I~~ 69 (252)
T PRK13597 20 KGVNFVNLRDA--G-D-PVEAARAYDEAGADELVFLDI------------------SATH--------EERAILLDVVAR 69 (252)
T ss_pred ECCCCCCCEEC--C-C-HHHHHHHHHHCCCCEEEEEEC------------------CCCC--------CCCHHHHHHHHH
T ss_conf 78777786788--8-9-999999999869999999956------------------4666--------686637999999
Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--CC
Q ss_conf 1000121000110454246788776555420675526983033365322110000234321111224445565531--26
Q gi|254780434|r 130 IQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIK--TG 207 (362)
Q Consensus 130 ~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~--~~ 207 (362)
.....-+-+.+|+.--+.+.++ +.+..+||-+.||=.. +.+++.+.++....-......... ..
T Consensus 70 i~~~~~vpiqvGGGIrs~e~~~------~ll~~GadkViigS~a--------~~np~~i~~~~~~fG~q~Iv~~iD~~~~ 135 (252)
T PRK13597 70 VAERVFIPLTVGGGVRSLEDAR------KLLLSGADKVSVNSAA--------VRRPELIRELADHFGAQAVVLAIDARWR 135 (252)
T ss_pred HHHHCCCCEEEECCCCCHHHHH------HHHHCCCCEEEECHHH--------HHCCHHHHHHHHHCCCCCEEEEEEEEEC
T ss_conf 9862698289847713089999------9985698779832666--------7493789999987499652999988861
Q ss_pred CCCE-EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 8851-786505777748889999987644982999806655532345775446322113564542468999999974089
Q gi|254780434|r 208 KFVP-IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGP 286 (362)
Q Consensus 208 ~~~P-i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~ 286 (362)
...+ ++++-.-..+.-...+.+....+.|+..+++++ ++|+++ +.|+- +++++++++.+
T Consensus 136 ~~~~~v~~~~~~~~~~~~~~d~~~~~~~~G~geil~td--I~rDGt-----------~~G~d-----~~l~~~i~~~~-- 195 (252)
T PRK13597 136 GDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTS--MDRDGT-----------KEGYD-----LRLTRMVAEAV-- 195 (252)
T ss_pred CCCCEEEECCCEEECCCCHHHHHHHHHHHCCCEEEEEE--ECCCCC-----------CCCCC-----HHHHHHHHHCC--
T ss_conf 89741675387275697699999999964899999975--737684-----------44769-----59999998507--
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7489996788999999999983999754527877069789999999999999983899
Q gi|254780434|r 287 KIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362)
Q Consensus 287 ~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362)
++|+|++|||.+.+|..+...+|++.|-++++|.+.... ..+++++|..+|+.
T Consensus 196 ~~pvIasGGv~s~~dl~~l~~~g~~gvi~G~al~~~~~s-----~~e~k~~L~~~~i~ 248 (252)
T PRK13597 196 GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIP-----IPELKRYLAEKGVH 248 (252)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHCCCCC-----HHHHHHHHHHCCCC
T ss_conf 998999789899999999987899699871276779999-----99999999987895
No 69
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.78 E-value=4.4e-06 Score=60.82 Aligned_cols=242 Identities=15% Similarity=0.161 Sum_probs=134.5
Q ss_pred CCCCCCCCEEEECCEECCCCEEECCCCCC--CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCC
Q ss_conf 67889631168887335997485346888--6779888740367524102001368789988626884255541000024
Q gi|254780434|r 38 PVHSDPRLNTKVAGISLSNPLGMAAGYDK--NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGF 115 (362)
Q Consensus 38 ~~~~~~~L~~~~~Gl~~~nPiglAaG~dk--~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl 115 (362)
..+++.++++++...+|+=|| +||-.|. +.++...+.++|.=.+ ++|+.
T Consensus 20 ~SRseVd~s~~~~~~~~~iPI-iaAnMDTV~~~~mA~~l~k~Gglgv-----------------LHR~~----------- 70 (326)
T PRK05458 20 NSRSECDTSVTLGPRTFKLPV-VPANMQTIIDEKIAEWLAENGYFYI-----------------MHRFD----------- 70 (326)
T ss_pred CCHHHCEEEEEECCCCCCCCE-EECCCCCCCCHHHHHHHHHCCCEEE-----------------EEECC-----------
T ss_conf 887884367985685227888-8589897488899999997898689-----------------98558-----------
Q ss_pred CCCCHHHHHHHHHHHHH-CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 77777889998764100-01210001104542467887765554206755269830333653221100002343211112
Q gi|254780434|r 116 NNAGYHTVFSRLSKIQP-TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIH 194 (362)
Q Consensus 116 ~N~G~~~~~~~l~~~~~-~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~ 194 (362)
.+...+.+++.+. +....+|+|.+ ++.++....+. .....+|++.+-+. |. ....+.+.+..
T Consensus 71 ----~e~~~~~~~~~~~~~~~~~iSvGi~---~~~~~~i~~l~-~~~~~~~~i~iDvA--hG-------~~~~~~~~i~~ 133 (326)
T PRK05458 71 ----PEARIPFIKDMHERGLIASISVGVK---DDEYDFIDQLA-AEGLTPEYITIDIA--HG-------HSDSVINMIKH 133 (326)
T ss_pred ----HHHHHHHHHHCCCCCCEEEEEECCC---HHHHHHHHHHH-HCCCCCCEEEEECC--CC-------CHHHHHHHHHH
T ss_conf ----8999999985232372799994799---89999999998-56999777999805--64-------42899999999
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 24445565531268851786505777748889999987644982999806655532345775446322113564542468
Q gi|254780434|r 195 VMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKST 274 (362)
Q Consensus 195 v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al 274 (362)
+ +. ...+++|++- |... .+.++.+.++|+|+|-+.=--++ .++-.... |. |.|- .-+
T Consensus 134 i---k~-----~~~~~~iiaG---NVaT---~e~~~~L~~~Gad~VkVGIG~Gs---~CTTR~~t---Gv-G~p~--~q~ 190 (326)
T PRK05458 134 I---KK-----HLPETFVIAG---NVGT---PEAVRELENAGADATKVGIGPGK---VCITKIKT---GF-GTGG--WQL 190 (326)
T ss_pred H---HH-----HCCCCCEEEC---CCCC---HHHHHHHHHCCCCEEEECCCCCC---CCCCCCCC---CC-CCCH--HHH
T ss_conf 9---98-----7899839965---4318---99999999749999996777987---52035013---54-7758--999
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC--CCH----------------------------
Q ss_conf 99999997408974899967889999999999839997545278770--697----------------------------
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY--EGI---------------------------- 324 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~--~Gp---------------------------- 324 (362)
..|.+..+.. +.|||+-|||.+.-|+.+.|.+|||+|++++-|.- |-|
T Consensus 191 sai~~ca~~~--~~~iiaDGGi~~~GDi~KAla~GAd~VM~G~~~Ag~~EspG~~~~~~g~~~k~y~Gmas~~~~~~~~~ 268 (326)
T PRK05458 191 AALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGETVEIDGKLYKEYFGSASEFQKGEYKN 268 (326)
T ss_pred HHHHHHHHHH--CCCEEEECCCCCCCHHHHHHHCCCCEEEECCHHCCCCCCCCCEEEECCEEEEEEECCCCHHHCCCCCC
T ss_conf 9999999972--79779736858747899998648988986712237777997179789979999874677534788457
Q ss_pred ---------------HHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf ---------------89999999999999983899778961
Q gi|254780434|r 325 ---------------SLPKRIIQGLSDFLNKENEVNFENIR 350 (362)
Q Consensus 325 ---------------~~~~~I~~~L~~~l~~~G~~si~e~i 350 (362)
.++.+|..+|+.-|.--|.++|.|+.
T Consensus 269 ~EG~~~~vp~kG~v~~~~~~l~gglrS~m~Y~Ga~~i~el~ 309 (326)
T PRK05458 269 VEGKKILVPHKGSLKDTLTEMQQDLQSSISYAGGKDLDAIR 309 (326)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHC
T ss_conf 88748987368888999999988877633375888688961
No 70
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=98.75 E-value=1.5e-06 Score=63.97 Aligned_cols=235 Identities=17% Similarity=0.267 Sum_probs=113.3
Q ss_pred CCCCCCEEEEC-CEECCCCEEECCCCCC--CHHHHHHHHHCC-CCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECC-
Q ss_conf 88963116888-7335997485346888--677988874036-752410200136878998862688425554100002-
Q gi|254780434|r 40 HSDPRLNTKVA-GISLSNPLGMAAGYDK--NAEVPIELLKLG-FGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLG- 114 (362)
Q Consensus 40 ~~~~~L~~~~~-Gl~~~nPiglAaG~dk--~~~~~~~l~~~G-~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~G- 114 (362)
.++.+|++++. +++|.-|| +||-.|+ +.++--.+..+| .|.+ -+-.+.+.|.-..+ ++.++. -...+|...
T Consensus 26 p~dVdlst~lt~~i~l~iPi-vSs~MDTVte~~mAiama~~GGlGVi-Hrn~~ie~q~~~v~-~Vk~~~-~~~~~~~~~d 101 (404)
T PRK06843 26 PSEVSLKTQLTKNISLNIPF-LSSAMDTVTESQMAIAIAKEGGIGII-HKNMSIEAQKKEIE-KVKTYK-FQKTINTNKD 101 (404)
T ss_pred HHHCEEEEEEECCEECCCCE-EECCCCCCCCHHHHHHHHHCCCEEEE-CCCCCHHHHHHHHH-HHHHCC-CCCEEECCCC
T ss_conf 66706768972881659987-84688777889999999988988999-18899999999998-874112-4641202654
Q ss_pred --------------CCCCCHHHHHHHHHH-------HHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf --------------477777889998764-------10001210001104542467887765554206755269830333
Q gi|254780434|r 115 --------------FNNAGYHTVFSRLSK-------IQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISS 173 (362)
Q Consensus 115 --------------l~N~G~~~~~~~l~~-------~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSC 173 (362)
+...-.....++.+. ......+++.|+.. .+..+.... .+..++|+|.|..+-
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~a~~d~~~rl~VgAAVg~~---~d~~era~~---Lv~AGvD~lvID~Ah 175 (404)
T PRK06843 102 TNEQKTKMLTAKQHLEESKIYKNAEHKEDFPNACKDLNSKLRVGAAVSID---IDTIERVEE---LVKAHVDILVIDSAH 175 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC---HHHHHHHHH---HHHCCCCEEEEECCC
T ss_conf 32024566658765223244441676644134455432467689995468---528999999---997699999996887
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-C
Q ss_conf 653221100002343211112244455655312688517865057777488899999876449829998066555323-4
Q gi|254780434|r 174 PNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKG-V 252 (362)
Q Consensus 174 PNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~-~ 252 (362)
-| ...+.+.+..++. ....+||++- |..+ .+-+..+.++|+|||.+.=- ++ .
T Consensus 176 Gh---------s~~~~e~ik~ik~--------~~p~v~VIaG---NVaT---~~~a~~Li~aGAD~VkVGiG----pGsi 228 (404)
T PRK06843 176 GH---------STRIIELVKTIKN--------KYPNLDLIAG---NIVT---KEAALDLINVGADCLKVGIG----PGSI 228 (404)
T ss_pred CC---------HHHHHHHHHHHHH--------HCCCCCEEEC---CCCC---HHHHHHHHHHCCCEEEECCC----CCCC
T ss_conf 52---------1789999999997--------6799616630---3057---99999999819899995654----7877
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf 5775446322113564542468999999974-089748999678899999999998399975452787
Q gi|254780434|r 253 QCSDNHEQDGGLSGSPLFLKSTIALAKIRQR-VGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAM 319 (362)
Q Consensus 253 ~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~-~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tal 319 (362)
++..... |. |.| . +-.|.++++. -+..+|||+-|||.+.-|+.+-|.+|||+|++++.|
T Consensus 229 CTTr~v~---Gv-GvP---q-~tAi~d~~~~a~~~~v~IIADGGI~~sGDi~KAlA~GAdaVMlGs~l 288 (404)
T PRK06843 229 CTTRIVA---GV-GVP---Q-ITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLF 288 (404)
T ss_pred CCCCCCC---CC-CCC---H-HHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHCCCCEEEECCHH
T ss_conf 2566545---86-874---8-99999999996057997883687465327999997189888867131
No 71
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=98.74 E-value=5e-06 Score=60.43 Aligned_cols=128 Identities=18% Similarity=0.234 Sum_probs=70.3
Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 20675526983033365322110000234321111224445565531268851786505777748889999987644982
Q gi|254780434|r 159 LFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVE 238 (362)
Q Consensus 159 ~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~d 238 (362)
.+..++|++.|..+-=| . +.. ++.+...+ +....+||++-= ..+ .+.++.+.++|+|
T Consensus 236 Lv~AGvDvivIDtAhGh--------s-~~v---i~~ik~ik-----~~~~~v~viaGN---v~T---~~~a~~L~~aGaD 292 (486)
T PRK05567 236 LVKAGVDVLVVDTAHGH--------S-EGV---LDRVREIK-----AKYPDVQIIAGN---VAT---AEAARALIEAGAD 292 (486)
T ss_pred HHHCCCCEEEEECCCCC--------H-HHH---HHHHHHHH-----HCCCCCCEEEEE---ECH---HHHHHHHHHCCCC
T ss_conf 99769988995044521--------5-778---99999997-----407877368751---201---9999999972987
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf 99980665553234577544632211356454246899999997408974899967889999999999839997545278
Q gi|254780434|r 239 GIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSA 318 (362)
Q Consensus 239 Giv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Ta 318 (362)
+|-+.=-.++ +++... .-|. |.|- -.+...++...+.. .+|||+-|||.+.-|+.+-|.+|||+|++++.
T Consensus 293 ~vkVGiG~Gs---iCtTr~---v~Gv-GvPq-~tAv~~~a~~a~~~--~v~iIADGGi~~sGdi~KAla~GAd~VMlGs~ 362 (486)
T PRK05567 293 AVKVGIGPGS---ICTTRI---VAGV-GVPQ-ITAIADAAEAAKKT--GIPVIADGGIRYSGDIAKALAAGASAVMLGSM 362 (486)
T ss_pred EEEECCCCCC---CCCCCC---CCCC-CCCH-HHHHHHHHHHHHHC--CCEEEECCCCCCCCHHHHHHHCCCCEEEECCH
T ss_conf 6996566886---651343---2477-8646-99999999999865--97799648835435799998658988986612
Q ss_pred H
Q ss_conf 7
Q gi|254780434|r 319 M 319 (362)
Q Consensus 319 l 319 (362)
|
T Consensus 363 l 363 (486)
T PRK05567 363 L 363 (486)
T ss_pred H
T ss_conf 1
No 72
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.73 E-value=8.7e-06 Score=58.81 Aligned_cols=160 Identities=17% Similarity=0.248 Sum_probs=90.1
Q ss_pred HCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 06755269830333653221100002343211112244455655312688517865057777488899999876449829
Q gi|254780434|r 160 FFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEG 239 (362)
Q Consensus 160 ~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dG 239 (362)
+..++|++.|..+--|.. ... +.++..+ +....+||++- |..+ .+-++.+.++|+||
T Consensus 247 v~aGvDvlvIDtAhGhs~---------~v~---~~ik~ik-----~~~p~v~vIaG---NVaT---~~~a~~Li~aGAD~ 303 (499)
T PTZ00314 247 IDAGVDVLVLDSSQGNSI---------YQI---DFIKWIK-----STYPHLEVIAG---NVVT---QDQAKNLIDAGADG 303 (499)
T ss_pred HHCCCCEEEEECCCCCCH---------HHH---HHHHHHH-----HHCCCCCEEEE---EECH---HHHHHHHHHCCCCE
T ss_conf 986998999816887727---------899---9999988-----52798846764---3310---99999999749987
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf 99806655532345775446322113564542468999999974089748999678899999999998399975452787
Q gi|254780434|r 240 IIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAM 319 (362)
Q Consensus 240 iv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tal 319 (362)
|-+.=-.++ +++...-. |. |.|- -.+...++...+. ..+|||+-|||.+.-|+.+-|.+|||+|+++|-|
T Consensus 304 vkVGiGpGS---iCTTR~v~---Gv-GvPq-~tAv~~~a~~a~~--~gvpiIADGGIr~sGDi~KAlAaGAd~VMlGsll 373 (499)
T PTZ00314 304 IRIGMGSGS---ICTTQEVC---AV-GRPQ-ATAVYKVARYAHS--RGVPCIADGGIRSSGDIVKALALGASCVMLGSML 373 (499)
T ss_pred EEECCCCCC---CCCCCCCC---CC-CCCH-HHHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 997535885---51046434---66-7860-5679999998644--9985991478464318999987289878608410
Q ss_pred H-------------------CCCH----------------------------------------HHHHHHHHHHHHHHHH
Q ss_conf 7-------------------0697----------------------------------------8999999999999998
Q gi|254780434|r 320 I-------------------YEGI----------------------------------------SLPKRIIQGLSDFLNK 340 (362)
Q Consensus 320 i-------------------~~Gp----------------------------------------~~~~~I~~~L~~~l~~ 340 (362)
. |+|. .++..+..+|+.-|.-
T Consensus 374 AGt~EsPGe~~~~~G~~yK~YRGMgS~~Am~~~~gs~~ry~~~~~~~~v~EGveg~vp~kG~v~~~l~ql~gGlrs~m~Y 453 (499)
T PTZ00314 374 AGTEETPGEYFFKNGVRLKKYRGMGSLEAMSQGKGSGSRYLSEEEKIQVAQGVSGSVVDKGSVLKLIPYLTKGVKHGAQD 453 (499)
T ss_pred CCCCCCCCCEEEECCEEEEEEEECCHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 47677997289999999999971043999974446630011210367477767798666887899999998587640417
Q ss_pred CCCCCHHHHHCC
Q ss_conf 389977896169
Q gi|254780434|r 341 ENEVNFENIRGS 352 (362)
Q Consensus 341 ~G~~si~e~iG~ 352 (362)
-|-.||+|+.-+
T Consensus 454 ~Ga~~i~el~~k 465 (499)
T PTZ00314 454 IGEISIDALREK 465 (499)
T ss_pred CCCCCHHHHHHH
T ss_conf 687869999864
No 73
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative; InterPro: IPR005270 The function of this family is unknown, but it may include TIM-barrel proteins..
Probab=98.71 E-value=1.5e-07 Score=70.60 Aligned_cols=218 Identities=18% Similarity=0.214 Sum_probs=144.8
Q ss_pred CCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCE--EEEECCCCCEEECCCCCCCHHHHHHHHHHHHH-CCCCCC
Q ss_conf 468886779888740367524102001368789988626--88425554100002477777889998764100-012100
Q gi|254780434|r 62 AGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRV--FRLTKDRAIINKLGFNNAGYHTVFSRLSKIQP-TSPIGI 138 (362)
Q Consensus 62 aG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~--~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~-~~pi~v 138 (362)
||. .|+|...++-+.||.-|++|..-..-++ ...-|. -|-. .+..+|--+|++ ++.+..++.+. +.-+.|
T Consensus 2 AGi-~daeFCrK~k~y~f~~V~lGGyNaDr~t-~~A~r~i~kRGR-kEF~f~~~e~~s----~I~~~~~~~~Esr~~v~V 74 (234)
T TIGR00736 2 AGI-SDAEFCRKLKDYLFALVTLGGYNADRET-LKAARKIEKRGR-KEFSFDLEELES----IIKKEAKKIKESRAKVAV 74 (234)
T ss_pred CCC-CCHHHHHHHHHHHCEEEEECCCCHHHHH-HHHHHHHHHCCC-CCCCCCCCHHHH----HHHHHHHHHHHCCCEEEE
T ss_conf 988-5245554443411003122563033899-998999985589-400125322457----888766764220352578
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC---C---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 0110454246788776555420675526983033365---3---221100002343211112244455655312688517
Q gi|254780434|r 139 NLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPN---T---PGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPI 212 (362)
Q Consensus 139 sI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPN---t---~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi 212 (362)
|+-.. .++++.........++|.+|||=-|=- | -|-..|.+++.|.++++.+... ...|+
T Consensus 75 nVr~~-----~le~~~~v~~~~ae~~diiEiNaHCRQPEiteiG~Gq~ll~n~e~L~ef~~k~~G~---------~~~p~ 140 (234)
T TIGR00736 75 NVRIS-----DLEEELDVELLVAEFADIIEINAHCRQPEITEIGIGQELLKNKELLKEFVAKVKGK---------LRKPV 140 (234)
T ss_pred EEEEE-----CCHHHHHHHHHHHHHCCEEEECCCCCCCCEEEECCCHHHHCCCHHHHHHHHHHCCC---------CCCCE
T ss_conf 86530-----00045677665421137378857588976155056535423802578887530343---------14723
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 86505777748889999987644982999806655532345775446322113564542468999999974089748999
Q gi|254780434|r 213 FLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIG 292 (362)
Q Consensus 213 ~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg 292 (362)
|||+--|...-+...++..+...|+|+|.+ +...++ .+-. =+..|..+.+..++++ |||
T Consensus 141 fvKIRgN~~~ld~~~~a~~l~d~g~d~iHv------------Dam~PG------~~~a--D~~l~~~~se~~nD~I-~IG 199 (234)
T TIGR00736 141 FVKIRGNVIKLDELKVARKLVDAGVDAIHV------------DAMKPG------EDRA--DLDLVKLVSEVKNDKI-VIG 199 (234)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCEEEE------------EEECCC------CCCC--CHHHHHHHHHHCCCEE-EEE
T ss_conf 789715787510357878988732355554------------322593------6936--7899999887618857-980
Q ss_pred ECCCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 67889999999999839997545278770
Q gi|254780434|r 293 TGGISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 293 ~GGI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
---|.+=|.|-++|++|||+|-+..+.+.
T Consensus 200 NNS~~dIE~a~~~l~aGad~vSvARa~l~ 228 (234)
T TIGR00736 200 NNSVDDIESAKEMLKAGADAVSVARAVLK 228 (234)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68710368899999840158999999861
No 74
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.70 E-value=2.3e-05 Score=55.95 Aligned_cols=243 Identities=15% Similarity=0.189 Sum_probs=126.1
Q ss_pred CCCCCCCEEEEC----CEEC-CCCEEECCCCCC--CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEE
Q ss_conf 788963116888----7335-997485346888--677988874036752410200136878998862688425554100
Q gi|254780434|r 39 VHSDPRLNTKVA----GISL-SNPLGMAAGYDK--NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIIN 111 (362)
Q Consensus 39 ~~~~~~L~~~~~----Gl~~-~nPiglAaG~dk--~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN 111 (362)
.+++.+|++++- +..+ .=|| +||-.|+ +.++...+...|. +. .++|.-
T Consensus 25 SRseV~l~~~~~f~~s~~~~~gIPI-IaAnMDTV~~~~MA~~L~k~Gg--l~---------------vLHR~~------- 79 (347)
T PRK05096 25 SRSEVELERQFTFKHSGQSWSGVPI-IAANMDTVGTFEMAKALASFDI--LT---------------AVHKHY------- 79 (347)
T ss_pred CHHHEEEEEEEEECCCCCCCCCCCE-EECCCCCCCCHHHHHHHHHCCC--EE---------------EEECCC-------
T ss_conf 8302366788853357774468857-9678887285899999998798--58---------------984379-------
Q ss_pred ECCCCCCCHHHHHHHHHHHHHC--CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHH
Q ss_conf 0024777778899987641000--12100011045424678877655542067552698303336532211000023432
Q gi|254780434|r 112 KLGFNNAGYHTVFSRLSKIQPT--SPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLE 189 (362)
Q Consensus 112 ~~Gl~N~G~~~~~~~l~~~~~~--~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~ 189 (362)
-.+.+.+.+++.... .-+.+++|-+ ++.++.... +.+..+.+|++.|.+.-=| .+.+
T Consensus 80 -------~~ee~~~~~~~~~~~~~~~v~vsiGi~---~~d~~r~~~-i~~~~~~~~~i~iDvA~G~---------~~~~- 138 (347)
T PRK05096 80 -------SVEEWAAFINNSSADVLKHVMVSTGTS---DADFEKTKQ-ILALSPALNFICIDVANGY---------SEHF- 138 (347)
T ss_pred -------CHHHHHHHHHHCCCCCCCEEEEEEECC---HHHHHHHHH-HHHCCCCCCEEEEECCCCC---------CHHH-
T ss_conf -------899999998521434467389999178---789999999-9952899898999779862---------0889-
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf 11112244455655312688517865057777488899999876449829998066555323-45775446322113564
Q gi|254780434|r 190 RLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKG-VQCSDNHEQDGGLSGSP 268 (362)
Q Consensus 190 ~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~-~~~~~~~~~~GGlSG~~ 268 (362)
++.+...+. .....+|++- |... .+-++.+.++|+|+|-+.=- ++ .+......+. |.|
T Consensus 139 --~~~i~~ik~-----~~~~~~iiaG---NvaT---~e~~~~L~~~GaD~vkVGIG----~Gs~CtTR~~tGv----G~P 197 (347)
T PRK05096 139 --VQFVAKARE-----AWPDKTICAG---NVVT---GEMVEELILSGADIVKVGIG----PGSVCTTRVKTGV----GYP 197 (347)
T ss_pred --HHHHHHHHH-----HCCCCEEECC---CHHH---HHHHHHHHHCCCCEEEECCC----CCCCCCCCCCCCC----CCH
T ss_conf --999999998-----7899808814---3123---99999999737889997677----8754304522356----730
Q ss_pred CCHHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC--CCH---------------------
Q ss_conf 5424689999999740-8974899967889999999999839997545278770--697---------------------
Q gi|254780434|r 269 LFLKSTIALAKIRQRV-GPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY--EGI--------------------- 324 (362)
Q Consensus 269 i~~~al~~i~~i~~~~-~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~--~Gp--------------------- 324 (362)
- +..|.+.++.. +-..+||+-|||.+.-|+.+-+.||||+|++++-|.= |-|
T Consensus 198 q----~sai~~c~~~~~~~~~~iiaDGGi~~~gDi~KAla~GAd~VM~G~~lAg~~EspG~~~~~~g~~~k~y~Gm~S~~ 273 (347)
T PRK05096 198 Q----LSAVIECADAAHGLGGMIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEVVEENGEKFMLFYGMSSES 273 (347)
T ss_pred H----HHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEECCEEEEEEECCCHHH
T ss_conf 3----789999999860579948956884750479999873898898673103777799618958997999995767198
Q ss_pred -----------------------------HHHHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf -----------------------------8999999999999998389977896169
Q gi|254780434|r 325 -----------------------------SLPKRIIQGLSDFLNKENEVNFENIRGS 352 (362)
Q Consensus 325 -----------------------------~~~~~I~~~L~~~l~~~G~~si~e~iG~ 352 (362)
.++.++..+|+.-|.--|..+|.|+.-.
T Consensus 274 a~~~~~g~~~~~~~~EG~~~~vp~kG~v~~~l~~l~gglrS~m~Y~Ga~~l~el~~~ 330 (347)
T PRK05096 274 AMDRHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKR 330 (347)
T ss_pred HHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHC
T ss_conf 887643887754268850899727889899999999898773327587759999758
No 75
>PRK03220 consensus
Probab=98.68 E-value=1.2e-06 Score=64.72 Aligned_cols=226 Identities=14% Similarity=0.129 Sum_probs=124.5
Q ss_pred CCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHH
Q ss_conf 87335997485346888677988874036752410200136878998862688425554100002477777889998764
Q gi|254780434|r 50 AGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSK 129 (362)
Q Consensus 50 ~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~ 129 (362)
-|..|.+..-. | | -.++.+.+.+.|+..+.+=-+ .. +.- |.....+-+++
T Consensus 20 kg~~~~~~~~~--g-d-P~~~a~~~~~~G~d~lhivDl--d~----------------a~~--------g~~~n~~~I~~ 69 (257)
T PRK03220 20 KGVNFENLRDA--G-D-PVELAAVYDAEGADELTFLDV--TA----------------SSS--------GRATMLDVVRR 69 (257)
T ss_pred ECCCCCCCEEC--C-C-HHHHHHHHHHCCCCEEEEEEC--CC----------------CCC--------CCHHHHHHHHH
T ss_conf 57777786788--8-9-999999999869998999908--88----------------756--------76307999999
Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf 100012100011045424678877655542067552698303336532211000023432111122444556553126--
Q gi|254780434|r 130 IQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTG-- 207 (362)
Q Consensus 130 ~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~-- 207 (362)
.....-+-+.+|+.--+.+.++. .+..+||-+.+|=. .+.+++.+.++.+..-...........
T Consensus 70 i~~~~~~pi~vGGGIrs~e~~~~------ll~~GadkVvigs~--------a~~~p~~~~~~~~~fG~q~Iv~siD~k~~ 135 (257)
T PRK03220 70 TAEQVFIPLTVGGGVRTVEDVDS------LLRAGADKVSVNTA--------AIARPELLAELARRFGSQCIVLSVDARRV 135 (257)
T ss_pred HHHCCCCCEEEECCCCCHHHHHH------HHHCCCCEEECHHH--------HHHCCHHHHHHHHHCCCEEEEEEEEEEEC
T ss_conf 98506964898478587999999------99819750872066--------77594777899987098669999998862
Q ss_pred --------CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf --------885178650577774888999998764498299980665553234577544632211356454246899999
Q gi|254780434|r 208 --------KFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAK 279 (362)
Q Consensus 208 --------~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~ 279 (362)
....++.+=.-..+.-++.+.++.+++.|+..+++++ ++++++ ++|+- ++.+++
T Consensus 136 ~~~~~~~~~g~~v~~~g~~~~t~~~~~~~i~~~~~~g~geil~td--I~rDGt-----------~~G~d-----~~l~~~ 197 (257)
T PRK03220 136 PVGSAPTPSGFEVTTHGGRRGTGIDAVEWAARGAELGVGEILLNS--MDADGT-----------KAGFD-----LEMLRA 197 (257)
T ss_pred CCCCCCCCCCEEEEECCCEEECCCCHHHHHHHHHHCCCCEEEEEE--ECCCCC-----------CCCCC-----HHHHHH
T ss_conf 567743468749997288260287599999998626988899998--868660-----------23789-----699999
Q ss_pred HHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99740897489996788999999999983999754527877069789999999999999983899
Q gi|254780434|r 280 IRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362)
Q Consensus 280 i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362)
+++.+ ++|+|++|||.+.+|..+.+..|+++|-++++|.+. -.-+ .+++++|+..||.
T Consensus 198 i~~~~--~~piIasGGv~s~~di~~l~~~g~~gv~~g~a~~~~-~~s~----~~~k~~l~~~~i~ 255 (257)
T PRK03220 198 VRAAV--TVPVIASGGAGAVEHFAPAVAAGADAVLAASVFHFG-ELTI----GQVKAALAAAGIT 255 (257)
T ss_pred HHHHC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHCC-CCCH----HHHHHHHHHCCCC
T ss_conf 99748--999899878999999999997899799874687889-9889----9999999987597
No 76
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.66 E-value=1.4e-06 Score=64.07 Aligned_cols=155 Identities=17% Similarity=0.199 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHH---CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 77889998764100---012100011045424678877655542067552698303336532211000023432111122
Q gi|254780434|r 119 GYHTVFSRLSKIQP---TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHV 195 (362)
Q Consensus 119 G~~~~~~~l~~~~~---~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v 195 (362)
..|.+.+.+++.+. +.|.+|||....+.. ..++..+.+.+.. .+++.+--..| ..... +
T Consensus 38 ~~e~lr~eI~k~r~~ltdkPFGVNi~~~~p~~-~~~~~~~vi~e~k--v~vv~~agG~P-----------~~~~~----L 99 (320)
T cd04743 38 RGEQVKALLEETAELLGDKPWGVGILGFVDTE-LRAAQLAVVRAIK--PTFALIAGGRP-----------DQARA----L 99 (320)
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC-CHHHHHHHHHCCC--CCEEEECCCCC-----------HHHHH----H
T ss_conf 98999999999999825998445575138872-2578888886169--98999568890-----------78799----9
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC----CCCCH
Q ss_conf 44455655312688517865057777488899999876449829998066555323457754463221135----64542
Q gi|254780434|r 196 MQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSG----SPLFL 271 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG----~~i~~ 271 (362)
. ...+.++..++ + ..+++.+++.|+|+|++-.+ +.||--| -+|-|
T Consensus 100 k----------~aGikvi~~V~---S----v~lAk~~~~~GaDavIaEG~--------------EaGGHiG~~~Tm~Lvp 148 (320)
T cd04743 100 E----------AIGISTYLHVP---S----PGLLKQFLENGARKFIFEGR--------------ECGGHVGPRSSFVLWE 148 (320)
T ss_pred H----------HCCCEEEEECC---C----HHHHHHHHHCCCCEEEEECC--------------CCCCCCCCCCHHHHHH
T ss_conf 9----------86997999779---9----99999999849999999574--------------5767767530134059
Q ss_pred HHHHHHHHHH-HHCCCCEEEEEECCCCCHHHHHHHHHCCCC--------EEEECHHHHCC
Q ss_conf 4689999999-740897489996788999999999983999--------75452787706
Q gi|254780434|r 272 KSTIALAKIR-QRVGPKIAIIGTGGISSTKDALDKIMAGAN--------LIQLYSAMIYE 322 (362)
Q Consensus 272 ~al~~i~~i~-~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs--------~VQi~Tali~~ 322 (362)
..++.+...- ..-..++|+|+.|||.+++.+...+..||. -||++|.|++-
T Consensus 149 qvvdav~~~~~~~~~~~IPViaAGGI~DGRg~aaa~aLgA~~a~~g~~~GVqmGTrfl~t 208 (320)
T cd04743 149 SAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFT 208 (320)
T ss_pred HHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCHHHCCCCCEEEEECHHHCC
T ss_conf 898898603566556787489976745618999999838842231562227860441101
No 77
>PRK08649 inositol-5-monophosphate dehydrogenase; Validated
Probab=98.66 E-value=1.7e-06 Score=63.54 Aligned_cols=269 Identities=18% Similarity=0.252 Sum_probs=134.0
Q ss_pred CCCCCCEEEECCEECCCCEEECCCCCC--CHHHHHHHHHC-CCCEEECC-CCCCCCCCCCCCCCEEE---EECCCCC--E
Q ss_conf 889631168887335997485346888--67798887403-67524102-00136878998862688---4255541--0
Q gi|254780434|r 40 HSDPRLNTKVAGISLSNPLGMAAGYDK--NAEVPIELLKL-GFGFVEIG-TVTPHPQAGNPRPRVFR---LTKDRAI--I 110 (362)
Q Consensus 40 ~~~~~L~~~~~Gl~~~nPiglAaG~dk--~~~~~~~l~~~-G~G~v~~k-tit~~p~~GNp~PR~~r---~~~~~~i--i 110 (362)
+.+.++++++.+++|.=|+ ++|-.|+ +.++--.+... |.|.+-.- .+| |.-+|.+.+-+ .+..++. +
T Consensus 31 p~dvd~st~l~~i~L~iPi-vSAaMDTVTE~~MAIamA~~GGiGVIH~~~i~~---R~~~~~~~~~~i~~~~~~~~~~~~ 106 (368)
T PRK08649 31 PEDVSTAWQIDAYRFEIPI-IASPMDAVVSPETAIELGRLGGLGVLNLEGLWT---RYEDPEPVLDEIASVGKDAATRLM 106 (368)
T ss_pred HHHCEEEEEECCEEECCCE-ECCCCCCCCCHHHHHHHHHCCCCEEEECCCCEE---ECCCHHHHHHHHHCCCHHHHHHHH
T ss_conf 7566221887688878857-768876667899999999879968993221231---028878888988703288889999
Q ss_pred EE-CCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE---CCCCCCCCCCCCCCHH
Q ss_conf 00-0247777788999876410001210001104542467887765554206755269830---3336532211000023
Q gi|254780434|r 111 NK-LGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTIN---ISSPNTPGLRSLQKKK 186 (362)
Q Consensus 111 N~-~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiN---iSCPNt~g~~~~~~~~ 186 (362)
.. +..| .-.+.+.+++++.+....+ +.+.. +.....++.+.+ ...++|.+.+- +++=|.. ...
T Consensus 107 ~~i~~~p-i~~~li~~ri~~~k~~g~~-~a~~~---~~~~~~~~~~~L--v~aGvDvlvId~~vvd~aH~~------~~~ 173 (368)
T PRK08649 107 QELYAEP-IKPELIGKRIAEIRDAGVI-AAVSL---SPQNAQKLGPTV--VEAGADLFVIQGTVVSAEHVS------EGG 173 (368)
T ss_pred HHHHHCC-CCHHHHHHHHHHHHHCCCE-EEEEE---CCHHHHHHHHHH--HHCCCCEEEEEEEEEEEHHHC------CCC
T ss_conf 9987546-7288999899987642857-99996---246389999999--974998899841475402220------320
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 43211112244455655312688517865057777488899999876449829998066555323-45775446322113
Q gi|254780434|r 187 NLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKG-VQCSDNHEQDGGLS 265 (362)
Q Consensus 187 ~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~-~~~~~~~~~~GGlS 265 (362)
. .+ .+.+. ....++||++- |..+ .+-++.+.++|+|+|-+.=- ++ +++-.... |.-
T Consensus 174 ~---~l-~~~~~------~~~~~v~vIaG---NVaT---~e~a~~Li~aGADaVKVGIG----pGSICTTRvVa---GvG 230 (368)
T PRK08649 174 E---PL-NLKEF------IYELDVPVVVG---GCVT---YTTALHLMRTGAAGVLVGIG----PGAACTSRGVL---GIG 230 (368)
T ss_pred H---HH-HHHHH------HCCCCCCEEEE---CCCC---HHHHHHHHHCCCCEEEECCC----CCCCCCCCCEE---CCC
T ss_conf 3---56-56643------12379878973---4469---99999999779989994566----88775663401---257
Q ss_pred CCCCCHHHHHHHHHHHHH----C-CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHH---------------------
Q ss_conf 564542468999999974----0-89748999678899999999998399975452787---------------------
Q gi|254780434|r 266 GSPLFLKSTIALAKIRQR----V-GPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAM--------------------- 319 (362)
Q Consensus 266 G~~i~~~al~~i~~i~~~----~-~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tal--------------------- 319 (362)
=|.+. |...++..++. . +..+|||+-|||...-|+.+-|.||||+|+++|-|
T Consensus 231 vPQlt--AI~~~a~a~~~y~~~~~g~~VpvIADGGIr~sGDi~KAlaaGA~~VMlGsllAGt~EsPG~~~~~gm~~~~~~ 308 (368)
T PRK08649 231 VPMAT--AIADCAAARRDYLDETGGRYVHVIADGGIVTSGDICKAIACGADAVMLGSPLARAAEAPGRGFHWGMAAPHPV 308 (368)
T ss_pred CHHHH--HHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 21699--9999999988655652685464895688586418999987289989877310476668987644333467766
Q ss_pred HCCC---------H--HH----------HHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 7069---------7--89----------999999999999983899778961
Q gi|254780434|r 320 IYEG---------I--SL----------PKRIIQGLSDFLNKENEVNFENIR 350 (362)
Q Consensus 320 i~~G---------p--~~----------~~~I~~~L~~~l~~~G~~si~e~i 350 (362)
+.+| + .+ +.++.-+|+.-|---|.++|+|+.
T Consensus 309 ~peG~~~~v~~~g~~~~vi~g~~~~~d~v~qlvGGLrs~MgY~Ga~~i~elq 360 (368)
T PRK08649 309 LPRGTRIQVGTTGSLEQILFGPADLPDGTHNLLGALRRSMATLGYSDLKEFQ 360 (368)
T ss_pred CCCCEEEECCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 8996388557665065612477767533888677998863023747088873
No 78
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.65 E-value=1.9e-06 Score=63.33 Aligned_cols=225 Identities=16% Similarity=0.180 Sum_probs=125.2
Q ss_pred CCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCH-HHHHHHHH
Q ss_conf 87335997485346888677988874036752410200136878998862688425554100002477777-88999876
Q gi|254780434|r 50 AGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGY-HTVFSRLS 128 (362)
Q Consensus 50 ~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~-~~~~~~l~ 128 (362)
-|..|++..-+ | | -.+..+.+.+.|+-.+.+=-+ +.+. .|.+. ..+++++.
T Consensus 19 k~~~~~~~~~~--g-d-P~~~a~~~~~~gadel~ivDl------------------d~s~------~~~~~~~~~I~~i~ 70 (253)
T PRK02083 19 KGVNFVNLRDA--G-D-PVELAKRYDEEGADELVFLDI------------------TASS------EGRDTMKDVVERVA 70 (253)
T ss_pred ECCCCCCCEEC--C-C-HHHHHHHHHHCCCCEEEEEEC------------------CCCC------CCCHHHHHHHHHHH
T ss_conf 78776452688--8-9-999999999879998999956------------------2664------57741799999999
Q ss_pred HHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--C
Q ss_conf 41000121000110454246788776555420675526983033365322110000234321111224445565531--2
Q gi|254780434|r 129 KIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIK--T 206 (362)
Q Consensus 129 ~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~--~ 206 (362)
+. -..| +.+|+.-.+.+.++ +.+..+||-+.||=.. +.+++.+.++....-......... .
T Consensus 71 ~~-~~~p--i~vGGGIrs~e~~~------~ll~~GadkVvigs~a--------~~~p~~i~~~~~~~G~q~Iv~siD~~~ 133 (253)
T PRK02083 71 EQ-VFIP--LTVGGGIRSVEDAR------RLLRAGADKVSINSAA--------VADPELITELADRFGSQCIVVAIDAKR 133 (253)
T ss_pred HH-CCCC--EEEECCCCCHHHHH------HHHHCCCCEEEECCHH--------HHCCCHHHHHHHHCCCEEEEEEEEEEE
T ss_conf 86-3987--78517621389876------8987798789999846--------538535578897469835999999887
Q ss_pred ---CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf ---68851786505777748889999987644982999806655532345775446322113564542468999999974
Q gi|254780434|r 207 ---GKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQR 283 (362)
Q Consensus 207 ---~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~ 283 (362)
....-++.+=.-..+.-++.+.++.+.+.|+..|++++ ++++++ +.|+- ++.+.++++.
T Consensus 134 ~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~g~geil~td--I~rDG~-----------~~G~d-----~~l~~~i~~~ 195 (253)
T PRK02083 134 DGEPGRWEVFTHGGRKPTGIDAVEWAKEVQELGAGEILLTS--MDQDGT-----------KNGYD-----LELTRAVRDA 195 (253)
T ss_pred CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEE--ECCCCC-----------CCCCC-----HHHHHHHHHH
T ss_conf 37687189998078412552399999998756987899998--855586-----------67889-----9999999975
Q ss_pred CCCCEEEEEECCCCCHHHHHHHH-HCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 08974899967889999999999-83999754527877069789999999999999983899
Q gi|254780434|r 284 VGPKIAIIGTGGISSTKDALDKI-MAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362)
Q Consensus 284 ~~~~i~IIg~GGI~s~~Da~e~l-~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362)
+ ++|||++|||.+.+|..+.+ ..|.++|-++++|.|.... ..+++++|..+|+.
T Consensus 196 ~--~iPiI~sGGv~s~~di~~~l~~~~i~gv~~G~~~~~~~~s-----l~~~k~~L~~~~i~ 250 (253)
T PRK02083 196 V--SVPVIASGGAGNLEHFAEAFTEGGADAALAASVFHFGEIT-----IGELKAYLAEQGIE 250 (253)
T ss_pred C--CCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHCCCCC-----HHHHHHHHHHCCCC
T ss_conf 7--9999998899999999999986798099871277769999-----99999999987896
No 79
>PRK13129 consensus
Probab=98.62 E-value=1.7e-05 Score=56.78 Aligned_cols=228 Identities=21% Similarity=0.237 Sum_probs=114.8
Q ss_pred ECCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH--CC
Q ss_conf 5346-88--8677988874036752410200136878998862688425554100002477777889998764100--01
Q gi|254780434|r 60 MAAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQP--TS 134 (362)
Q Consensus 60 lAaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~--~~ 134 (362)
+-|| +| .+.+.++.+.+.|...+|+|==...|..- .|-+. ....+++-|-+ ..+.+++-+++.+. +.
T Consensus 25 itaG~P~~e~s~~~~~~l~~~GaDiiEiGiPfSDP~AD--GpvIq-~A~~~AL~~G~-----~~~~~~~~~~~~r~~~~~ 96 (267)
T PRK13129 25 LMAGDPDLETTAEALLILQENGADLIELGIPYSDPLAD--GPVIQ-AAATRALQSGT-----TLEKVLEMLESLKGKLTI 96 (267)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHCCC-----CHHHHHHHHHHHHCCCCC
T ss_conf 70718998999999999997799999979988887765--89999-99999997698-----789999999985434788
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 21000110454246788776555420675526983033365322110000234321111224445565531268851786
Q gi|254780434|r 135 PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFL 214 (362)
Q Consensus 135 pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~v 214 (362)
|+++=--.|.--.-.+++|.+.+++.+ +|.+-+ |.-| .+...++..... ...+..+-
T Consensus 97 PivlM~Y~N~i~~~G~e~F~~~~~~~G--vdGvIi----pDLP-------~eE~~~~~~~~~----------~~gl~~I~ 153 (267)
T PRK13129 97 PIILFTYYNPLLNRGMERFCEQAAAAG--VAGLVV----PDLP-------LEEAEKLSPIAA----------ERGIDLIL 153 (267)
T ss_pred CEEEEEEHHHHHHHHHHHHHHHHHHCC--CCEEEC----CCCC-------HHHHHHHHHHHH----------HCCCEEEE
T ss_conf 889986107898855999999998669--875767----8999-------899999999998----------53981689
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 50577774888999998764498299980665553234577544632211356454246899999997408974899967
Q gi|254780434|r 215 KISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG 294 (362)
Q Consensus 215 KLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G 294 (362)
=++|..+++.+..+++. ..|++=.=+ +.++ +|.- ..+.+.-...++.+++.+ ++|+ ++|
T Consensus 154 lvaPtt~~~Ri~~i~~~-----~~gFiY~vs---~~Gv--------TG~~--~~~~~~~~~~i~~ik~~t--~~Pv-~vG 212 (267)
T PRK13129 154 LVAPTTPAERMKRIAQQ-----SRGFTYLVS---VTGV--------TGER--SQMENRVESLLQQLRQVT--SKPI-AVG 212 (267)
T ss_pred EECCCCCHHHHHHHHHC-----CCCEEEEEE---CCCC--------CCCC--CCCCHHHHHHHHHHHHHC--CCCE-EEE
T ss_conf 94899968999999816-----898089873---4665--------6765--445088999999999834--8981-788
Q ss_pred -CCCCHHHHHHHHHCCCCEEEECHHHHCC--------CHHHHHHHHHHHHHHHH
Q ss_conf -8899999999998399975452787706--------97899999999999999
Q gi|254780434|r 295 -GISSTKDALDKIMAGANLIQLYSAMIYE--------GISLPKRIIQGLSDFLN 339 (362)
Q Consensus 295 -GI~s~~Da~e~l~aGAs~VQi~Tali~~--------Gp~~~~~I~~~L~~~l~ 339 (362)
||.+++||.+....|||.|=|+|+++-. +..-+.+..++|++-|+
T Consensus 213 FGIs~~e~v~~~~~~~ADGvIVGSaiV~~i~e~~~~~~~~~v~~fvk~lk~ald 266 (267)
T PRK13129 213 FGISGPEQARQVREWGADGAIVGSAFVKRLAEASPGEGLQEAGEFCRELRAAAD 266 (267)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 447999999999854999999878999999865917579999999999999866
No 80
>PRK13115 consensus
Probab=98.60 E-value=1.4e-05 Score=57.48 Aligned_cols=220 Identities=15% Similarity=0.193 Sum_probs=110.8
Q ss_pred CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH-HCCCCCCEEECCC
Q ss_conf 867798887403675241020013687899886268842555410000247777788999876410-0012100011045
Q gi|254780434|r 66 KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ-PTSPIGINLGANK 144 (362)
Q Consensus 66 k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~-~~~pi~vsI~~~~ 144 (362)
.+.+.++.+.+.|...+|+|==-..|..- .|-+. ...++++-|-+ ..+.+++-+++.+ .+.|+++ .++.+
T Consensus 39 ~t~~~i~~l~~~GaDiiElGiPFSDP~AD--GPvIQ-~A~~rAL~~G~-----~~~~~f~~v~~~~~~~~Pivl-M~Y~N 109 (269)
T PRK13115 39 TSIAAMTALVESGCDIVEVGLPYSDPVMD--GPVIQ-AATEAALRGGV-----RVRDVFRAVEAISAAGGRALV-MTYWN 109 (269)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHCCC-----CHHHHHHHHHHHCCCCCCEEE-HHHHH
T ss_conf 99999999996699999979998885666--89999-99999997799-----599999999984157998885-47548
Q ss_pred C-CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
Q ss_conf 4-246788776555420675526983033365322110000234321111224445565531268851786505777748
Q gi|254780434|r 145 D-SKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEE 223 (362)
Q Consensus 145 ~-s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~ 223 (362)
. -.-.+++|.+.+++.+ +|.+-+ |.-| .+...++..... ...+.++-=++|..+++
T Consensus 110 ~i~~yG~e~F~~~~~~~G--vdGvIi----pDLP-------~eE~~~~~~~~~----------~~gi~~I~LvaPtt~~e 166 (269)
T PRK13115 110 PVLRYGVDRFARDLAAAG--GAGLIT----PDLI-------PDEAGEWLAASE----------RHGLDRIFLVAPSSTPE 166 (269)
T ss_pred HHHHHCHHHHHHHHHHCC--CCEEEC----CCCC-------HHHHHHHHHHHH----------HCCEEEEEEECCCCCHH
T ss_conf 998736999999999739--980764----7899-------789999999998----------65812899858999889
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH
Q ss_conf 8899999876449829998066555323457754463221135--64542468999999974089748999678899999
Q gi|254780434|r 224 ELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSG--SPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKD 301 (362)
Q Consensus 224 ~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG--~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~D 301 (362)
.+..+++.+ .|++=+=+. . |..| ..+.......++.+++.+ ++|+.-.=||++++|
T Consensus 167 Ri~~i~~~a-----~GFIY~Vs~---~------------GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv~vGFGIs~~e~ 224 (269)
T PRK13115 167 RLAETVEAS-----RGFVYAAST---M------------GVTGARDAVSSAAPELVARVRAAS--DIPVCVGLGVSSAAQ 224 (269)
T ss_pred HHHHHHHCC-----CCCEEEEEC---C------------CCCCCCCCCCHHHHHHHHHHHHHC--CCCCEEECCCCCHHH
T ss_conf 999998448-----880899754---5------------456776444177999999999717--998179727899999
Q ss_pred HHHHHHCCCCEEEECHHHHC----CCHHHHHHHHHHHHHHHHH
Q ss_conf 99999839997545278770----6978999999999999998
Q gi|254780434|r 302 ALDKIMAGANLIQLYSAMIY----EGISLPKRIIQGLSDFLNK 340 (362)
Q Consensus 302 a~e~l~aGAs~VQi~Tali~----~Gp~~~~~I~~~L~~~l~~ 340 (362)
|.+ +...||.|=++|+++- .|..-+....++|++-+++
T Consensus 225 ~~~-~~~~aDGvIVGSa~V~~i~~~g~~~v~~~~~el~~~~k~ 266 (269)
T PRK13115 225 AAE-IAGYADGVIVGSALVSALLDGGLPAVRALTEELAAGVRR 266 (269)
T ss_pred HHH-HHHHCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 999-980299999868999999975979999999999999998
No 81
>PRK02145 consensus
Probab=98.57 E-value=2.9e-06 Score=61.97 Aligned_cols=226 Identities=14% Similarity=0.170 Sum_probs=125.1
Q ss_pred CCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHH
Q ss_conf 87335997485346888677988874036752410200136878998862688425554100002477777889998764
Q gi|254780434|r 50 AGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSK 129 (362)
Q Consensus 50 ~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~ 129 (362)
-|..|.+..-.. | =.++.+.|.+.|+..+.+=-+ +.+. .|.+...+-+++
T Consensus 20 kg~~~~~~~~~g---d-P~~~a~~~~~~GadelhivDl------------------d~a~--------~~~~~~~~~I~~ 69 (257)
T PRK02145 20 KGVNFVELRDAG---D-PVEIARRYDEQGADELTFLDI------------------TATS--------DGRDLILPIIEA 69 (257)
T ss_pred ECCCCCCEEECC---C-HHHHHHHHHHCCCCEEEEEEC------------------CCCC--------CCCHHHHHHHHH
T ss_conf 577777738888---9-999999999879998999978------------------8876--------675408999999
Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf 100012100011045424678877655542067552698303336532211000023432111122444556553126--
Q gi|254780434|r 130 IQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTG-- 207 (362)
Q Consensus 130 ~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~-- 207 (362)
......+-+.+|+.--+.+.++ +.+..+||-+.+|=.. +.+++.+.++.+..-...........
T Consensus 70 i~~~~~iPi~vGGGIrs~e~~~------~ll~~GadkVii~s~a--------~~np~~v~~~~~~fG~q~Iv~siD~k~~ 135 (257)
T PRK02145 70 VASQVFIPLTVGGGVRAVEDVR------RLLNAGADKVSMNSSA--------VANPQLVRDAADKYGSQCIVVAIDAKRV 135 (257)
T ss_pred HHHHCCCCEEEECCCCCHHHHH------HHHHCCCCEEEEHHHH--------HHCCCHHHHHHHHCCCCCEEEEEEEEEC
T ss_conf 9965687489627730468899------9998199889841556--------6593022457876698344999998733
Q ss_pred ------CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ------88517865057777488899999876449829998066555323457754463221135645424689999999
Q gi|254780434|r 208 ------KFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIR 281 (362)
Q Consensus 208 ------~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~ 281 (362)
.+.-++.+-.-..+.-++.+.++.+.+.|+..+++++ ++++++ +.|+- ++.+++++
T Consensus 136 ~~~~~~~~~~v~~~~~~~~t~~~~~~~~~~~~~~G~geil~td--I~rDG~-----------~~G~d-----l~l~~~i~ 197 (257)
T PRK02145 136 SADGEPPRWEVFTHGGRKATGLDAVEWARKMAELGAGEILLTS--MDRDGT-----------KSGFD-----LALTRAVS 197 (257)
T ss_pred CCCCCCCEEEEEECCCEECCCCCHHHHHHHHHHCCCCEEEEEE--ECCCCC-----------CCCCC-----HHHHHHHH
T ss_conf 6777775089997787143677455765688761878689999--847787-----------78889-----79999998
Q ss_pred HHCCCCEEEEEECCCCCHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7408974899967889999999999839-99754527877069789999999999999983899
Q gi|254780434|r 282 QRVGPKIAIIGTGGISSTKDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362)
Q Consensus 282 ~~~~~~i~IIg~GGI~s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362)
+.+ ++|+|++|||.+.+|..+.+..| +++|-.++.|.|.-.. ..+++++|..+|+.
T Consensus 198 ~~~--~ipvIasGGi~s~~di~~~~~~~~~~av~~g~~~~~~~~~-----i~e~k~~l~~~~~~ 254 (257)
T PRK02145 198 DAV--PVPVIASGGVGSLQHLADGITEGHADAVLAASIFHYGEHT-----VGEAKRFMAERGIA 254 (257)
T ss_pred HCC--CCCEEEECCCCCHHHHHHHHHHCCCCEEEEHHHHHCCCCC-----HHHHHHHHHHCCCC
T ss_conf 626--9989998689999999999980898487653267779989-----99999999987796
No 82
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.57 E-value=5.2e-06 Score=60.32 Aligned_cols=229 Identities=17% Similarity=0.203 Sum_probs=121.8
Q ss_pred ECCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 5346-88--86779888740367524102001368789988626884255541000024777778899987641000121
Q gi|254780434|r 60 MAAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPI 136 (362)
Q Consensus 60 lAaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi 136 (362)
+-|| +| .+.+.++.+.+. ...+|+|==-..|..- .|-+. -..++++-| | .....+++.+++ +.+.|+
T Consensus 11 itaG~P~~e~s~~~l~~l~~~-aDiiElGiPfSDPvAD--GpvIq-~A~~~Al~~--g---~~~~~i~~~~r~-~~~~pi 80 (247)
T PRK13125 11 LTAGWPNAETFLEAIDGLVGL-VDFLELGIPPKNPKYD--GPVIR-KAHREVSYW--G---LDYWSLLEEVRK-KVGVPT 80 (247)
T ss_pred EECCCCCHHHHHHHHHHHHHC-CCEEEECCCCCCCCCC--HHHHH-HHHHHHHHC--C---CCHHHHHHHHCC-CCCCCE
T ss_conf 718379989999999998647-9999979988987666--09999-999999876--9---989999998505-689988
Q ss_pred CCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 00011045424678877655542067552698303336532211000023432111122444556553126885178650
Q gi|254780434|r 137 GINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKI 216 (362)
Q Consensus 137 ~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKL 216 (362)
++=-=.| +=....++|.+.+++.+ +|-+-+ .-.| +..++....++..... ..+..+.=+
T Consensus 81 vlM~Y~N-~~~~g~e~F~~~~~~~G--vdGvIi-pDLP-------~e~~ee~~~~~~~~~~----------~gl~~I~lv 139 (247)
T PRK13125 81 YIMTYLE-DYVGSLDDLLNTAKEVG--ARGVLF-PDLL-------IDFPDELEKYVELIRR----------YGLAPVFFT 139 (247)
T ss_pred EEHHHHH-HHHHHHHHHHHHHHHCC--CCEEEE-CCCC-------CCCHHHHHHHHHHHHH----------CCCCEEEEE
T ss_conf 9729889-99976999999999859--975883-3888-------7546789999999997----------698469995
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC-C
Q ss_conf 577774888999998764498299980665553234577544632211356454246899999997408974899967-8
Q gi|254780434|r 217 SPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG-G 295 (362)
Q Consensus 217 sPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G-G 295 (362)
+|..+++.+..+++.+ .|++-.-. . + ..|..+..-..+.+.++++... +.|| .+| |
T Consensus 140 sPtt~~~ri~~i~~~s-----~gFvY~~~-~---g------------vTG~~~~~~~~~~i~~ik~~~~-~~Pv-~vGFG 196 (247)
T PRK13125 140 SPKFPDRLIRRLSKLS-----PLFIYLGL-Y---P------------ATGVELPVYVERNIKRVRELVG-DVYL-VAGFA 196 (247)
T ss_pred CCCCCHHHHHHHHHHC-----CCEEEEEE-E---C------------CCCCCCCCCHHHHHHHHHHHCC-CCCE-EEECC
T ss_conf 7998199999999868-----97799994-4---3------------6788773259999999998569-9985-88328
Q ss_pred CCCHHHHHHHHHCCCCEEEECHHHHC----CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 89999999999839997545278770----697899999999999999838
Q gi|254780434|r 296 ISSTKDALDKIMAGANLIQLYSAMIY----EGISLPKRIIQGLSDFLNKEN 342 (362)
Q Consensus 296 I~s~~Da~e~l~aGAs~VQi~Tali~----~Gp~~~~~I~~~L~~~l~~~G 342 (362)
|.+++|+.+.+..|||.|=|+|+++- +|..-+.+..++|++-|++.|
T Consensus 197 I~t~e~v~~~~~~~aDGvIVGSaiVk~i~~~~~~~~~~~v~~l~~al~e~~ 247 (247)
T PRK13125 197 IDSPEDAAKALSAGADGVVVGTAFIRRLERNGVEEALSLLKEIRGALDEYG 247 (247)
T ss_pred CCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
T ss_conf 799999999985589999987899999997698999999999999985259
No 83
>PRK13117 consensus
Probab=98.57 E-value=1.6e-05 Score=56.97 Aligned_cols=210 Identities=23% Similarity=0.214 Sum_probs=107.8
Q ss_pred ECCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH---HC
Q ss_conf 5346-88--867798887403675241020013687899886268842555410000247777788999876410---00
Q gi|254780434|r 60 MAAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ---PT 133 (362)
Q Consensus 60 lAaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~---~~ 133 (362)
+-|| +| .+.+.+..+.+.|...+|+|==-..|-. -.|-+. ....+++-|- -..+.+++.+++.+ .+
T Consensus 23 itaG~P~~~~t~~~~~~l~~~GaDiiElGiPfSDP~A--DGpvIq-~A~~rAL~~G-----~~~~~~~~~~~~ir~~~~~ 94 (268)
T PRK13117 23 VTLGDPSPELSLKIIDTLIEAGADALELGIPFSDPLA--DGPTIQ-NANLRALAAG-----VTPAQCFELLAKIRAKYPT 94 (268)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC--CCHHHH-HHHHHHHHCC-----CCHHHHHHHHHHHHCCCCC
T ss_conf 7270899799999999999669998997899888565--579999-9999998459-----9699999999885004789
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 12100011045424678877655542067552698303336532211000023432111122444556553126885178
Q gi|254780434|r 134 SPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIF 213 (362)
Q Consensus 134 ~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~ 213 (362)
.|+++=--.|.--...++.|.+.+.+.+ +|.+-+ .-+|+ +.-.++..... +... -||
T Consensus 95 ~pivlM~Y~N~i~~~G~e~F~~~~~~aG--vdGvIi-pDLP~----------eE~~~~~~~~~--------~~gl-~~I- 151 (268)
T PRK13117 95 IPIGLLLYANLVFANGIDNFYARCAEAG--VDSVLI-ADVPV----------EESAPFRQAAK--------KHGI-API- 151 (268)
T ss_pred CCEEEEECCCHHHHCCHHHHHHHHHHCC--CCEEEE-CCCCH----------HHHHHHHHHHH--------HCCC-CEE-
T ss_conf 8779973262898717999999999769--877985-79997----------88589999998--------6798-379-
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 65057777488899999876449829998066555323457754463221135645424689999999740897489996
Q gi|254780434|r 214 LKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGT 293 (362)
Q Consensus 214 vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~ 293 (362)
-=++|..+++.+..+++. ++|++=.=+ +.++... ...+.+.-.+.+..+|+.+ ++|| ++
T Consensus 152 ~lv~Ptt~~~Ri~~i~~~-----a~GFiY~vs---~~GvTG~----------~~~~~~~~~~~i~~ik~~t--~~Pv-~v 210 (268)
T PRK13117 152 FICPPNADDDTLRQIASL-----GRGYTYLLS---RAGVTGA----------ENKAAAPLNHLVEKLKEYN--APPP-LQ 210 (268)
T ss_pred EEECCCCCHHHHHHHHHH-----CCCEEEEEE---CCCCCCC----------CCCCCHHHHHHHHHHHHCC--CCCE-EE
T ss_conf 984799999999999974-----798599983---6777889----------8666277999999999647--9986-99
Q ss_pred C-CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 7-889999999999839997545278770
Q gi|254780434|r 294 G-GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 294 G-GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
| ||.+.+|+.+.+..|||.|=|+|+++-
T Consensus 211 GFGIs~~e~v~~~~~~~aDGvIVGSaiV~ 239 (268)
T PRK13117 211 GFGISEPEQVKAAIKAGAAGAISGSAIVK 239 (268)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 83789999999998638998998789999
No 84
>PRK02621 consensus
Probab=98.57 E-value=5.5e-06 Score=60.14 Aligned_cols=225 Identities=14% Similarity=0.125 Sum_probs=121.9
Q ss_pred CEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHH
Q ss_conf 73359974853468886779888740367524102001368789988626884255541000024777778899987641
Q gi|254780434|r 51 GISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKI 130 (362)
Q Consensus 51 Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~ 130 (362)
|..|.+..-. | | =.++.+.+.+.|+-.+.+=-+ +.+.- |-....+-+++.
T Consensus 20 ~~~~~~~~~~--g-d-P~~~ak~~~~~gad~lhivDl------------------d~a~~--------~~~~~~~~I~~i 69 (254)
T PRK02621 20 GVNFVGLRDA--G-D-PVELACRYSQAGADELVFLDI------------------TATHE--------GRATLIDVVYRT 69 (254)
T ss_pred CCCCCCCEEC--C-C-HHHHHHHHHHCCCCEEEEEEC------------------CCCCC--------CCHHHHHHHHHH
T ss_conf 8577784788--8-9-999999999859999999826------------------67656--------754289999999
Q ss_pred HHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC----
Q ss_conf 0001210001104542467887765554206755269830333653221100002343211112244455655312----
Q gi|254780434|r 131 QPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKT---- 206 (362)
Q Consensus 131 ~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~---- 206 (362)
....-+-+.+|+.--+.+.++. .+..+||-+.||=. .+.+++.+.++....-..........
T Consensus 70 ~~~~~ipi~vGGGIrs~e~~~~------ll~~GadkVii~s~--------a~~np~~~~~~~~~fG~q~Iv~siD~k~~~ 135 (254)
T PRK02621 70 AEQVFIPLTVGGGISSLEGIKE------LLRAGADKVSLNSA--------AVRDPDLVRQASDRFGSQCIVVAIDARRRK 135 (254)
T ss_pred HHHCCCCEEEECCEEEHHHHHH------HHHCCCCEEEECCH--------HHHCCCHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf 9867985899633535799999------99749998999886--------764735445568756984339999955353
Q ss_pred -CCCCE-EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf -68851-7865057777488899999876449829998066555323457754463221135645424689999999740
Q gi|254780434|r 207 -GKFVP-IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRV 284 (362)
Q Consensus 207 -~~~~P-i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~ 284 (362)
.+.-+ ++++=.-..+.-++.+.++.+.+.|+..|++++ ++++++ +.|+- +..++++++.+
T Consensus 136 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~g~geil~td--I~~DGt-----------~~G~d-----~~l~~~i~~~~ 197 (254)
T PRK02621 136 PDNPGWDVYVRGGRENTGLDAVEWAEEVAERGAGEILLTS--MDGDGT-----------QAGYD-----LELTRAIAEAV 197 (254)
T ss_pred CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEE--ECCCCC-----------CCCCC-----HHHHHHHHHHC
T ss_conf 4788628996688455776799999887762889699988--804797-----------57688-----69999999717
Q ss_pred CCCEEEEEECCCCCHHHHHHHHH-CCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 89748999678899999999998-3999754527877069789999999999999983899
Q gi|254780434|r 285 GPKIAIIGTGGISSTKDALDKIM-AGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362)
Q Consensus 285 ~~~i~IIg~GGI~s~~Da~e~l~-aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362)
++|+|++|||.+.+|..+.+. .|++.|-+++++.+. -.-+ .+++++|..+|+.
T Consensus 198 --~iPvi~sGGi~s~edi~~~l~~~~v~gvivG~al~~~-~~~l----~e~K~~l~~~~i~ 251 (254)
T PRK02621 198 --EIPVIASGGAGCCDHIAEALTEGKAEAALLASLLHYG-QLTI----AEIKADLLARGLP 251 (254)
T ss_pred --CCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHCC-CCCH----HHHHHHHHHCCCC
T ss_conf --9979997799999999999985898198775787889-9999----9999999977799
No 85
>PRK01659 consensus
Probab=98.55 E-value=3.9e-06 Score=61.12 Aligned_cols=225 Identities=15% Similarity=0.140 Sum_probs=121.8
Q ss_pred CEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHH
Q ss_conf 73359974853468886779888740367524102001368789988626884255541000024777778899987641
Q gi|254780434|r 51 GISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKI 130 (362)
Q Consensus 51 Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~ 130 (362)
|..|.+..-+ | | =.++.+.+.+.|+-.+.+=-+ +.+. . |-....+-+++.
T Consensus 20 g~~~~~~~~~--g-D-P~~~ak~~~~~Gad~ihivDl------------------d~a~------~--g~~~n~~~I~~i 69 (252)
T PRK01659 20 GVNFVGLQDV--G-D-PVEIAAAYNEAGADELVFLDI------------------TATH------E--GRKTMVDVVEKV 69 (252)
T ss_pred CCCCCCCEEC--C-C-HHHHHHHHHHCCCCEEEEEEC------------------CCCC------C--CCHHHHHHHHHH
T ss_conf 9577784687--8-9-999999999879999999946------------------7665------6--886489999999
Q ss_pred HHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC----
Q ss_conf 0001210001104542467887765554206755269830333653221100002343211112244455655312----
Q gi|254780434|r 131 QPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKT---- 206 (362)
Q Consensus 131 ~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~---- 206 (362)
....-+-+.+|+.--+.+.++. .+..+||-+.+|=.. +.+++.+.++....-..........
T Consensus 70 ~~~~~ipi~vGGGIrs~e~~~~------~l~~GadkViigs~a--------~~n~~~i~~~~~~~G~q~IvvsiD~k~~~ 135 (252)
T PRK01659 70 AAKVFIPLTVGGGISSVKDMKR------LLRAGADKVSINSAA--------VLRPELITEGADHFGSQCIVVAIDAKYDA 135 (252)
T ss_pred HHHCCCCEEEECCEECHHHHHH------HHHCCCCEEEECHHH--------HHCHHHHHHHHHHCCCEEEEEEEEEEEEC
T ss_conf 9756974799633200688889------874488559831777--------52915321467646863269999989705
Q ss_pred -CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf -6885178650577774888999998764498299980665553234577544632211356454246899999997408
Q gi|254780434|r 207 -GKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVG 285 (362)
Q Consensus 207 -~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~ 285 (362)
...--++.+=.-..+.-++.+.++.+.+.|+..+++++ ++++++ ++|+- ++.+.++++.+
T Consensus 136 ~~~~~~i~~~g~~~~~~~~~~~~i~~~~~~g~geil~td--I~rDG~-----------~~G~d-----l~l~~~i~~~~- 196 (252)
T PRK01659 136 EAGKWNVYTHGGRVDTGLDAIAWAKEAVRLGAGEILLTS--MDADGT-----------KNGFD-----LRLTKAISEAV- 196 (252)
T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEE--ECCCCC-----------CCCCC-----HHHHHHHHHHC-
T ss_conf 688689996899576777799999999976997799998--814585-----------47689-----89999999868-
Q ss_pred CCEEEEEECCCCCHHHHHHHHHC-CCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 97489996788999999999983-999754527877069789999999999999983899
Q gi|254780434|r 286 PKIAIIGTGGISSTKDALDKIMA-GANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362)
Q Consensus 286 ~~i~IIg~GGI~s~~Da~e~l~a-GAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362)
++|+|++|||.+.+|..+.+.. ++++|-++++|.|.... ..+++++|...||.
T Consensus 197 -~~PiIasGGi~~~~di~~l~~~~~v~gv~~g~~~~~~~~s-----l~e~k~~L~~~~~~ 250 (252)
T PRK01659 197 -SVPVIASGGAGNADHMVEVFQKTTADAALAASIFHYGETS-----IKEVKAKLREAGVN 250 (252)
T ss_pred -CCCEEEEECCCCHHHHHHHHHHCCCCEEEEHHHHHCCCCC-----HHHHHHHHHHCCCC
T ss_conf -9999999179999999999974898265575477779999-----99999999987498
No 86
>PRK00830 consensus
Probab=98.55 E-value=3.4e-06 Score=61.57 Aligned_cols=227 Identities=14% Similarity=0.163 Sum_probs=126.4
Q ss_pred ECCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHH
Q ss_conf 88733599748534688867798887403675241020013687899886268842555410000247777788999876
Q gi|254780434|r 49 VAGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLS 128 (362)
Q Consensus 49 ~~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~ 128 (362)
+-|..|++...+..= .++.+.+.+.|+-.+.+=-+... ..| .....+-++
T Consensus 22 vKg~~f~~~~y~gdP----~~~ak~~~~~gadelhivDld~a-~~g-------------------------~~~~~~~I~ 71 (273)
T PRK00830 22 VKGVEFVQLRYAGDP----VELAKRYYEDGADELVFLDITAS-HEG-------------------------RATMIDVIE 71 (273)
T ss_pred EECCCCCCCEECCCH----HHHHHHHHHCCCCEEEEEEEECC-CCC-------------------------CCCHHHHHH
T ss_conf 858677687578899----99999999879998999953246-468-------------------------842799999
Q ss_pred HHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 41000121000110454246788776555420675526983033365322110000234321111224445565531---
Q gi|254780434|r 129 KIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIK--- 205 (362)
Q Consensus 129 ~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~--- 205 (362)
+.....-+-+.+|+.--+.+.++. .+..+||-+.||=. .+.+++.+.++....-.........
T Consensus 72 ~i~~~~~~pi~vGGGIrs~e~~~~------ll~~GadkVvIgS~--------a~~np~~v~~~~~~fGsq~IvvsiD~k~ 137 (273)
T PRK00830 72 RTAEEVFIPLTVGGGIRSIEDIRQ------ILRAGADKVSVNTA--------AVKNPEFIREASDIFGSQCIVVAIDCKR 137 (273)
T ss_pred HHHHHCCCCEEEECCEEECCCHHH------HHHCCCCEEECHHH--------HHHCCHHHHHHHHHCCCCEEEEEEEEEC
T ss_conf 999866995896088437732899------99769863983798--------9859077899998769905999998433
Q ss_pred --------------CCCCCEEEEECC----CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --------------268851786505----77774888999998764498299980665553234577544632211356
Q gi|254780434|r 206 --------------TGKFVPIFLKIS----PDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGS 267 (362)
Q Consensus 206 --------------~~~~~Pi~vKLs----Pd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~ 267 (362)
.....|-|.+++ -..+.-++.++++.+++.|+..|++++ ++|+++ +.|+
T Consensus 138 ~~~~~~~~~~~~~~~~~g~~~w~~v~~~g~~~~t~~~~~~~~~~~~~~G~geil~td--I~rDGt-----------~~G~ 204 (273)
T PRK00830 138 NYNPKDNPDKTIVELEDGTCAWYEVVIYGGREFTGIDAVQWAKKVEELGAGEILLTS--MDRDGT-----------KDGY 204 (273)
T ss_pred CCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEE--ECCCCC-----------CCCC
T ss_conf 766545676214540478742289997078033786799999999864988688878--757796-----------5688
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHC-CCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 45424689999999740897489996788999999999983-999754527877069789999999999999983899
Q gi|254780434|r 268 PLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMA-GANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362)
Q Consensus 268 ~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~a-GAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362)
- ++++.++.+.+ ++|||++|||.+.+|..+.+.. ++++|-++++|.|.... ..+++++|..+||.
T Consensus 205 d-----~~l~~~i~~~~--~iPvIasGGv~~~~di~~~~~~~~~~~v~~gs~f~~~~~s-----i~e~k~~L~~~~i~ 270 (273)
T PRK00830 205 D-----IPITKKISEEV--DIPVIASGGVGNPEHIYEGFSDGKADAALAASIFHFNEYS-----IREVKEYLRERGIP 270 (273)
T ss_pred C-----HHHHHHHHHCC--CCCEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHHCCCCC-----HHHHHHHHHHCCCC
T ss_conf 9-----69999998637--9988998899999999999983898688770056669979-----99999999987796
No 87
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.54 E-value=1.5e-06 Score=63.97 Aligned_cols=198 Identities=16% Similarity=0.154 Sum_probs=112.6
Q ss_pred HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCH
Q ss_conf 77988874036752410200136878998862688425554100002477777889998764100012100011045424
Q gi|254780434|r 68 AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSK 147 (362)
Q Consensus 68 ~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~ 147 (362)
.+..+.+.+.|+-.+.+=-+... +.|.+ .| ..+++++.+ ..-+-+.+|+.--+.
T Consensus 33 ~~~ak~f~~~GadelhivDld~a-~~g~~-------------------~n---~~~I~~I~~---~~~ipi~vGGGIrs~ 86 (253)
T PRK01033 33 INAVRIFNEKEADELIVLDIDAS-RKGRE-------------------PN---YELIENLAS---ECFMPLCYGGGIKTV 86 (253)
T ss_pred HHHHHHHHHCCCCEEEEEECCCC-CCCCC-------------------CH---HHHHHHHHH---HCCCCEEEECCCCCH
T ss_conf 99999999879998999947454-24880-------------------16---999999998---769988986881216
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC----CCCEEEEECCCCCCHH
Q ss_conf 678877655542067552698303336532211000023432111122444556553126----8851786505777748
Q gi|254780434|r 148 DFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTG----KFVPIFLKISPDLSEE 223 (362)
Q Consensus 148 ~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~----~~~Pi~vKLsPd~~~~ 223 (362)
+.++ +.+..+||-+.+|=. .+.+++.+.++.+..-........... ...-++..=.-..+.-
T Consensus 87 e~~~------~ll~~GadkViigs~--------a~~~p~~i~~~~~~fG~q~IvvsiD~k~~~~~~~~v~~~g~~~~t~~ 152 (253)
T PRK01033 87 EQAK------RIFSLGVEKVSISTA--------ALEDPKLITEAAEIYGSQSVVVSIDVKKRLFGRYDVYTHNGTKKTGL 152 (253)
T ss_pred HHHH------HHHHCCCCEEEECCH--------HHHCCHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCC
T ss_conf 8889------998679866999987--------86374165789987799769999998248778347898679536785
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH
Q ss_conf 88999998764498299980665553234577544632211356454246899999997408974899967889999999
Q gi|254780434|r 224 ELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDAL 303 (362)
Q Consensus 224 ~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~ 303 (362)
.+.++++.+.+.|+..+++++ +++++ -++|+- ++.++++++.+ ++|+|++|||.+.+|..
T Consensus 153 ~~~~~~~~~~~~g~geil~Td--I~rDG-----------t~~G~d-----~~l~~~i~~~~--~ipiIasGGi~s~~di~ 212 (253)
T PRK01033 153 DPVEFAKQAEELGAGEIVLNS--IDRDG-----------VMKGYD-----LELIKKISSAV--KIPVTALGGAGSLDDIA 212 (253)
T ss_pred CHHHHHHHHHHCCCCEEEEEE--ECCCC-----------CCCCCC-----HHHHHHHHHHC--CCCEEEECCCCCHHHHH
T ss_conf 589999998746977999987--84889-----------766879-----99999999878--99999978989999999
Q ss_pred HHH-HCCCCEEEECHHHHCCCHH
Q ss_conf 999-8399975452787706978
Q gi|254780434|r 304 DKI-MAGANLIQLYSAMIYEGIS 325 (362)
Q Consensus 304 e~l-~aGAs~VQi~Tali~~Gp~ 325 (362)
+.+ ..|+++|-++|.|.|.|+.
T Consensus 213 ~l~~~~~v~gv~~gs~F~f~g~~ 235 (253)
T PRK01033 213 DLIQEAGASAAAAGSLFVFKGPH 235 (253)
T ss_pred HHHHHCCCEEEEEEEEEEECCCC
T ss_conf 99986797399783168984798
No 88
>PRK04281 consensus
Probab=98.52 E-value=8.8e-06 Score=58.77 Aligned_cols=226 Identities=14% Similarity=0.179 Sum_probs=124.1
Q ss_pred CCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHH
Q ss_conf 87335997485346888677988874036752410200136878998862688425554100002477777889998764
Q gi|254780434|r 50 AGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSK 129 (362)
Q Consensus 50 ~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~ 129 (362)
-|..|.++.-. | | -.++.+.|.+.|+-.+.+=-+ +.+. .|.....+-+++
T Consensus 19 kg~~~~~~~~~--g-d-P~~~ak~~~~~GadelhivDl------------------d~a~--------~~~~~~~~~I~~ 68 (254)
T PRK04281 19 KGVNFIGLRDA--G-D-PVEAAKRYNGEGADELTFLDI------------------TASS--------DNRDTILHIIEE 68 (254)
T ss_pred ECCCCCCCEEC--C-C-HHHHHHHHHHCCCCEEEEEEC------------------CCCC--------CCCHHHHHHHHH
T ss_conf 68577785788--8-9-999999999869999999968------------------8987--------775308999999
Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC---
Q ss_conf 10001210001104542467887765554206755269830333653221100002343211112244455655312---
Q gi|254780434|r 130 IQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKT--- 206 (362)
Q Consensus 130 ~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~--- 206 (362)
.....-+-+.+|+.--+.+.++ +.+..+||-+.+|=.. +.+++.+.++....-..........
T Consensus 69 i~~~~~vpi~vGGGIrs~e~~~------~ll~~GadkViigs~a--------~~np~~l~~~~~~fG~q~Iv~siD~k~~ 134 (254)
T PRK04281 69 VAGQVFIPLTVGGGVRTVADIR------RLLNAGADKVSINTAA--------VTRPDLIDEAAGFFGSQAIVAAVDAKAV 134 (254)
T ss_pred HHHHCCCCEEEECCEEECHHHH------HHHHCCCCEEEECHHH--------HHCCHHHHHHHHHCCCEEEEEEEEEEEE
T ss_conf 9850796289977754518899------9997699889977767--------6492676767875598217999988850
Q ss_pred --CCC-CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf --688-51786505777748889999987644982999806655532345775446322113564542468999999974
Q gi|254780434|r 207 --GKF-VPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQR 283 (362)
Q Consensus 207 --~~~-~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~ 283 (362)
... .-++.+=.-..+.-++.+++..+.+.|+..+++++ ++++++ +.|+- +..++++++.
T Consensus 135 ~~~~~~~~i~~~g~~~~t~~~~~~~~~~~~~~g~geil~td--I~rDGt-----------~~G~d-----~~l~~~i~~~ 196 (254)
T PRK04281 135 NPENTRWEIFTHGGRNPTGLDAVEWAVEMQKRGAGEILLTG--MDRDGT-----------KQGFN-----LPLTRAVAEA 196 (254)
T ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEE--ECCCCC-----------CCCCC-----HHHHHHHHHH
T ss_conf 24688459997588647754499999998752998999988--857887-----------68768-----6999999861
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 08974899967889999999999839-99754527877069789999999999999983899
Q gi|254780434|r 284 VGPKIAIIGTGGISSTKDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362)
Q Consensus 284 ~~~~i~IIg~GGI~s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362)
+ ++|||++|||.+.+|..+.+..| +++|-++++|.|.-.. + .+++++|+..|+.
T Consensus 197 ~--~iPvIasGGv~~~~di~~~~~~~~~~~v~~g~~~~~~~~s-l----~eak~~l~~~~i~ 251 (254)
T PRK04281 197 V--DIPVIASGGVGNVRHLIEGITEGKADAVLAAGIFHFGEIA-I----REAKRAMREAGIE 251 (254)
T ss_pred C--CCCEEEECCCCCHHHHHHHHHHCCCCEEEEHHHHHCCCCC-H----HHHHHHHHHCCCC
T ss_conf 6--9989997898999999999980898889764377779989-9----9999999986797
No 89
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.51 E-value=6.3e-06 Score=59.76 Aligned_cols=176 Identities=16% Similarity=0.195 Sum_probs=99.1
Q ss_pred HHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99987641000121000110454246788776555420675526983033365322110000234321111224445565
Q gi|254780434|r 123 VFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEE 202 (362)
Q Consensus 123 ~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~ 202 (362)
+++++.+ ..-+-+.+|+.-.+.+.++ +.+..+||-+.+|=.. +.+++.+.++....-......
T Consensus 62 ~i~~i~~---~~~~pi~vGGGIrs~~~~~------~~l~~GadkVvigs~~--------~~n~~~~~~~~~~~Gsq~Iv~ 124 (243)
T cd04731 62 VVERVAE---EVFIPLTVGGGIRSLEDAR------RLLRAGADKVSINSAA--------VENPELIREIAKRFGSQCVVV 124 (243)
T ss_pred HHHHHHH---HCCCCEEEEEEEEEHHHHH------HHHHCCCCEEEECCCC--------CCCCCHHHHHHHHCCCCCEEE
T ss_conf 9999998---6798689985066479999------9997799789989844--------237714357887569930999
Q ss_pred HHHC----CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 5312----688517865057777488899999876449829998066555323457754463221135645424689999
Q gi|254780434|r 203 KIKT----GKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALA 278 (362)
Q Consensus 203 ~~~~----~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~ 278 (362)
.... ...--++..-.-..+.-.+.++++.+.+.|+..+++++ +++++ -++|+- +..++
T Consensus 125 siD~k~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~G~geil~td--I~~DG-----------t~~G~d-----~~l~~ 186 (243)
T cd04731 125 SIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTS--MDRDG-----------TKKGYD-----LELIR 186 (243)
T ss_pred EEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEE--ECCCC-----------CCCCCC-----HHHHH
T ss_conf 9997653789628984698441267899999999846987899987--25768-----------566579-----99999
Q ss_pred HHHHHCCCCEEEEEECCCCCHHHHHHHHH-CCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99974089748999678899999999998-399975452787706978999999999999998
Q gi|254780434|r 279 KIRQRVGPKIAIIGTGGISSTKDALDKIM-AGANLIQLYSAMIYEGISLPKRIIQGLSDFLNK 340 (362)
Q Consensus 279 ~i~~~~~~~i~IIg~GGI~s~~Da~e~l~-aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~ 340 (362)
++++.+ ++|||++|||.+.+|..+.+. .|++.|-++++|.|..-. +. ++++||.+
T Consensus 187 ~i~~~~--~~piI~sGGi~~~~di~~~l~~~~~~gv~~g~~~~~~~~~-l~----~~k~~L~~ 242 (243)
T cd04731 187 AVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYT-IA----ELKEYLAE 242 (243)
T ss_pred HHHHHC--CCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHCCCCC-HH----HHHHHHHH
T ss_conf 999868--9999998899999999999987898299882276769989-99----99999861
No 90
>PRK02747 consensus
Probab=98.51 E-value=6.4e-06 Score=59.71 Aligned_cols=226 Identities=13% Similarity=0.143 Sum_probs=125.3
Q ss_pred CCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHH
Q ss_conf 87335997485346888677988874036752410200136878998862688425554100002477777889998764
Q gi|254780434|r 50 AGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSK 129 (362)
Q Consensus 50 ~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~ 129 (362)
-|..|.+..-. | .-.++.+.+.+.|+-.+.+=-+ +.+. .|.....+-+++
T Consensus 19 kg~~~~~~~~~--g--dP~~~ak~~~~~Gadelh~vDl------------------~~a~--------~~~~~~~~lI~~ 68 (257)
T PRK02747 19 KGVNFVDLRDA--G--DPVEAARAYDAAGADELCFLDI------------------TASH--------ENRGTMLDVVAR 68 (257)
T ss_pred ECCCCCCEEEC--C--CHHHHHHHHHHCCCCEEEEEEC------------------CCCC--------CCCHHHHHHHHH
T ss_conf 58777770788--8--9999999999869998999947------------------6775--------675528999999
Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf 100012100011045424678877655542067552698303336532211000023432111122444556553126--
Q gi|254780434|r 130 IQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTG-- 207 (362)
Q Consensus 130 ~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~-- 207 (362)
.....-+-+.+|+.--+.+.++ +.+..+||-+.+|=. .+.+++.+.++.+..-...........
T Consensus 69 i~~~~~ipi~vGGGIrs~e~~~------~ll~~GadkViigs~--------a~~np~l~~~~~~~fG~q~Iv~siD~k~~ 134 (257)
T PRK02747 69 TAEQCFMPLTVGGGVRTVDDIR------KLLLAGADKVSINSA--------AVARPEFVAEAADKFGSQCIVVAIDAKRV 134 (257)
T ss_pred HHHHCCCCEEEECCCCCHHHHH------HHHHCCCCEEEECHH--------HHHCCHHHHHHHHHCCCEEEEEEEEEEEC
T ss_conf 9986699889848820738878------998769968983444--------65483477778875596579999987751
Q ss_pred -----CCCE-EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf -----8851-7865057777488899999876449829998066555323457754463221135645424689999999
Q gi|254780434|r 208 -----KFVP-IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIR 281 (362)
Q Consensus 208 -----~~~P-i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~ 281 (362)
...+ ++.+=.-..+.-++.+.++.+.+.|+..+++++ ++++++ ++|+- +..+++++
T Consensus 135 ~~~~~~~~~~i~~~~~~~~t~~~~~~~~~~~~~~G~geil~td--I~rDG~-----------~~G~d-----l~l~~~i~ 196 (257)
T PRK02747 135 SPAGENDRWEIFTHGGRKPTGIDAVEFAQKVVSLGAGEILLTS--MDRDGT-----------KAGFD-----LPLTRAIA 196 (257)
T ss_pred CCCCCCCCEEEEECCCCEECCCHHHHHHHHHHHCCCCEEEEEE--ECCCCC-----------CCCCC-----HHHHHHHH
T ss_conf 5767787389998898463430399999999970998899998--835573-----------26788-----69999998
Q ss_pred HHCCCCEEEEEECCCCCHHHHHHHHHC-CCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 740897489996788999999999983-999754527877069789999999999999983899
Q gi|254780434|r 282 QRVGPKIAIIGTGGISSTKDALDKIMA-GANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362)
Q Consensus 282 ~~~~~~i~IIg~GGI~s~~Da~e~l~a-GAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362)
+.+ ++|+|++|||.+.+|..+.+.. ++++|-++++|.|.-.. ..+++++|...||.
T Consensus 197 ~~~--~~pvIasGGv~~~~di~~~~~~~~~~av~~g~~~~~~~~~-----l~~ak~~L~~~~i~ 253 (257)
T PRK02747 197 DAV--RVPVIASGGVGTLDHLVEGVRDGHATAVLAASIFHFGTYT-----IGEAKAHMAAAGIP 253 (257)
T ss_pred HCC--CCCEEEECCCCCHHHHHHHHHHCCCCEEEEHHHHHCCCCC-----HHHHHHHHHHCCCC
T ss_conf 607--9989997799999999999983898499883267769989-----99999999987896
No 91
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.49 E-value=4.8e-05 Score=53.78 Aligned_cols=210 Identities=23% Similarity=0.211 Sum_probs=110.4
Q ss_pred ECCC-CCC--CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH--CC
Q ss_conf 5346-888--677988874036752410200136878998862688425554100002477777889998764100--01
Q gi|254780434|r 60 MAAG-YDK--NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQP--TS 134 (362)
Q Consensus 60 lAaG-~dk--~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~--~~ 134 (362)
+-+| +|. +.+.++.+.+.|...+|+|==-..|..- .|-+. -..++++-|-+ ..+.+++-+++.+. +.
T Consensus 21 ~taG~P~~e~s~~~~~~l~~~GaDiiElGiPfSDP~AD--GpvIq-~A~~~AL~~G~-----~~~~~~~~v~~~r~~~~~ 92 (263)
T CHL00200 21 ITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLAD--GPIIQ-EASNRALKQGI-----NLNKILSILSEVNGEIKA 92 (263)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHCCC-----CHHHHHHHHHHHHHCCCC
T ss_conf 70738987899999999997699999978988886665--89999-99999997798-----777899999998606799
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 21000110454246788776555420675526983033365322110000234321111224445565531268851786
Q gi|254780434|r 135 PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFL 214 (362)
Q Consensus 135 pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~v 214 (362)
|+.+=-=.|.--.-.+++|.+-+...+ +|.+-+ |--| .+...++..... ...+.++-
T Consensus 93 PivlMtY~N~i~~yG~e~F~~~~~~~G--vdGlIi----pDLP-------~eE~~~~~~~~~----------~~gl~~I~ 149 (263)
T CHL00200 93 PIVIFTYYNPVLHYGINKFIKKISQAG--VKGLII----PDLP-------YEESDYLISVCN----------LYNIELIL 149 (263)
T ss_pred CEEEEEEHHHHHHCCHHHHHHHHHHCC--CCEEEC----CCCC-------HHHHHHHHHHHH----------HCCCCEEE
T ss_conf 889986206888738899999999849--986874----7999-------788899999998----------55862166
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 50577774888999998764498299980665553234577544632211356454246899999997408974899967
Q gi|254780434|r 215 KISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG 294 (362)
Q Consensus 215 KLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G 294 (362)
=++|..+++++..+++.+ +|++=.=+ +.++.... ..+...-.+.+..+|+.+ ++|+ .+|
T Consensus 150 lvaPtt~~~Ri~~i~~~a-----~GFiY~vs---~~GvTG~~----------~~~~~~l~~~i~~ik~~t--~~Pv-~vG 208 (263)
T CHL00200 150 LIAPTSSKSRIQKIARAA-----PGCIYLVS---TTGVTGLK----------TELDKKLKKLIETIKKMT--NKPI-ILG 208 (263)
T ss_pred EECCCCCHHHHHHHHHHC-----CCCEEEEE---CCCCCCCC----------CCCHHHHHHHHHHHHHHC--CCCE-EEE
T ss_conf 647899699999999728-----98089853---36556875----------445187999999999736--9984-873
Q ss_pred -CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf -889999999999839997545278770
Q gi|254780434|r 295 -GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 295 -GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
||.+.+|+.+....|||.|=|+|+++-
T Consensus 209 FGIs~~e~v~~~~~~~aDGvIVGSaiV~ 236 (263)
T CHL00200 209 FGISTSEQIKQIKGWNINGIVIGSACVQ 236 (263)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 5879999999997459999998789999
No 92
>PRK05211 consensus
Probab=98.49 E-value=6.2e-06 Score=59.79 Aligned_cols=227 Identities=18% Similarity=0.175 Sum_probs=126.8
Q ss_pred ECCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHH
Q ss_conf 88733599748534688867798887403675241020013687899886268842555410000247777788999876
Q gi|254780434|r 49 VAGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLS 128 (362)
Q Consensus 49 ~~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~ 128 (362)
+-+.+|++.-.+ | | -.+..+.|.+.|+-.+.+=-++.. +.|.+ .| ..+++++.
T Consensus 9 Vk~~~f~~~~~~--g-D-P~~~ak~~~~~gadelhivDld~a-~~g~~-------------------~n---~~~I~~i~ 61 (248)
T PRK05211 9 VKGVQFRNHEII--G-D-IVPLAKRYAEEGADELVFYDITAS-SDGRV-------------------VD---KSWVSRVA 61 (248)
T ss_pred EECCCCCCCEEC--C-C-HHHHHHHHHHCCCCEEEEEECCCC-CCCCC-------------------CH---HHHHHHHH
T ss_conf 768576688677--8-9-999999999869998999978677-67872-------------------14---99999999
Q ss_pred HHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH----
Q ss_conf 4100012100011045424678877655542067552698303336532211000023432111122444556553----
Q gi|254780434|r 129 KIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKI---- 204 (362)
Q Consensus 129 ~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~---- 204 (362)
+.- ..| +.+|+.--+.+.++ +.+..+||-+.||=.. +.+|+.+.++....-........
T Consensus 62 ~~~-~~P--l~vGGGIrs~~~i~------~ll~~GadkViigs~a--------~~np~li~~~~~~fG~q~IvvsiD~~~ 124 (248)
T PRK05211 62 EVI-DIP--FCVAGGIKSVEDAR------EILSFGADKISINSPA--------LADPTLITRLADRFGVQCIVVGIDSWF 124 (248)
T ss_pred HHC-CCC--EEEECCCCCHHHHH------HHHHCCCCEEEECCHH--------HHCCHHHHHHHHHCCCCEEEEEEEEEC
T ss_conf 767-985--89627801389999------9998799889989767--------619618999998579936999997102
Q ss_pred -HCCCCCEEEEECC----CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf -1268851786505----77774888999998764498299980665553234577544632211356454246899999
Q gi|254780434|r 205 -KTGKFVPIFLKIS----PDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAK 279 (362)
Q Consensus 205 -~~~~~~Pi~vKLs----Pd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~ 279 (362)
.......++.--. -..+.-++.++++.+++.|+--|++++ ++++++ +.|+- ++.++.
T Consensus 125 ~~~~~~~~v~~~~g~~~~~~~t~~~~~d~i~~~~~~G~geIl~t~--IdrDG~-----------~~G~d-----l~l~~~ 186 (248)
T PRK05211 125 DAETGKYQVYQYTGDESRTKATQWETLDWVKEVQKRGAGEIVLNM--MNQDGV-----------RNGYD-----LAQLKK 186 (248)
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE--ECCCCC-----------CCCCC-----HHHHHH
T ss_conf 555785799982586565304773699999999975986699989--878997-----------27889-----999999
Q ss_pred HHHHCCCCEEEEEECCCCCHHHHHHHH-HCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 997408974899967889999999999-83999754527877069789999999999999983899
Q gi|254780434|r 280 IRQRVGPKIAIIGTGGISSTKDALDKI-MAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362)
Q Consensus 280 i~~~~~~~i~IIg~GGI~s~~Da~e~l-~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362)
+++.+ ++|+|++||+.+.+|..+.+ .+|++.|-++++|.+.-.. ..+++++|..+|+.
T Consensus 187 i~~~~--~iPvIasGGv~s~~di~~~~~~~~~~gvi~gs~~~~~~i~-----l~e~k~~L~~~gi~ 245 (248)
T PRK05211 187 VRAIC--HVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIIN-----IGELKQYLAAQGIE 245 (248)
T ss_pred HHHHC--CCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCC-----HHHHHHHHHHCCCC
T ss_conf 99746--9999998888999999999986798413304888889999-----99999999987895
No 93
>PRK13137 consensus
Probab=98.48 E-value=4.5e-05 Score=54.00 Aligned_cols=62 Identities=19% Similarity=0.115 Sum_probs=44.0
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC---CCHHHHHHHHHHHHHHHH
Q ss_conf 899999997408974899967889999999999839997545278770---697899999999999999
Q gi|254780434|r 274 TIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY---EGISLPKRIIQGLSDFLN 339 (362)
Q Consensus 274 l~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~---~Gp~~~~~I~~~L~~~l~ 339 (362)
...++.+++.+ ++|+...=||.+.+|+...... ||.|=++|+++- +|-. +....+||++.++
T Consensus 201 ~~~i~~ik~~t--~~Pv~vGFGIs~~e~~~~~~~~-aDGvIVGSaiV~~i~e~~d-~~~~~~el~~~~r 265 (266)
T PRK13137 201 PDMLRLARQYA--ALPVAVGFGVKDKATAAQVAQV-ADGVVVGSAFINAVEEGRD-VAALAQEIAAGCR 265 (266)
T ss_pred HHHHHHHHHCC--CCCEEEECCCCCHHHHHHHHHH-CCEEEEHHHHHHHHHHCCC-HHHHHHHHHHHHC
T ss_conf 99999998638--9987998266988999999831-9999980999999995898-9999999998744
No 94
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.48 E-value=6.2e-05 Score=53.07 Aligned_cols=210 Identities=17% Similarity=0.203 Sum_probs=120.2
Q ss_pred EECCEECCCCEEECCCCCCCHH-HHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHH
Q ss_conf 8887335997485346888677-988874036752410200136878998862688425554100002477777889998
Q gi|254780434|r 48 KVAGISLSNPLGMAAGYDKNAE-VPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSR 126 (362)
Q Consensus 48 ~~~Gl~~~nPiglAaG~dk~~~-~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~ 126 (362)
++.|.+|++.+.+..|--++.+ +.+.+...|.--| ||..+ | +.+.+.+-+.+++.
T Consensus 2 ~Igg~~f~SRLilGTgky~s~~~~~~ai~aSgaeiv---TVAlR-----------R----------~~~~~~~~~~~l~~ 57 (248)
T cd04728 2 TIGGKTFSSRLLLGTGKYPSPAIMKEAIEASGAEIV---TVALR-----------R----------VNIGDPGGESFLDL 57 (248)
T ss_pred EECCEEEECCEEEECCCCCCHHHHHHHHHHHCCCEE---EEEEE-----------E----------CCCCCCCCHHHHHH
T ss_conf 789988774337864899999999999999689769---99986-----------3----------05788885268987
Q ss_pred HHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76410001210001104542467887765554206755269830-33365322110000234321111224445565531
Q gi|254780434|r 127 LSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTIN-ISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIK 205 (362)
Q Consensus 127 l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiN-iSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~ 205 (362)
++..+ ..+--|-.+-.+.+|++. .+++.|++. ..|.+-|- +.-|+ .|........++-+....+
T Consensus 58 i~~~~--~~~LPNTAGc~ta~EAvr-~A~laRE~~-~t~~IKLEVi~D~~-----------~LlPD~~eTl~Aae~Lv~~ 122 (248)
T cd04728 58 LDKSG--YTLLPNTAGCRTAEEAVR-TARLAREAL-GTDWIKLEVIGDDK-----------TLLPDPIETLKAAEILVKE 122 (248)
T ss_pred HHHCC--CEECCCCCCCCCHHHHHH-HHHHHHHHH-CCCEEEEEEECCCC-----------CCCCCHHHHHHHHHHHHHC
T ss_conf 52338--668765401167999999-999999984-89869999817976-----------7798868999999999988
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 26885178650577774888999998764498299980665553234577544632211356454246899999997408
Q gi|254780434|r 206 TGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVG 285 (362)
Q Consensus 206 ~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~ 285 (362)
. .-|+ |+.+++ ..+++.+++.|+..+-- +-.+. . ||..|.. ...++.++++.
T Consensus 123 G---F~Vl----pY~~~D--~v~akrLe~~Gc~avMP---------lgsPI-G------Sg~Gl~n--~~~l~~i~e~~- 174 (248)
T cd04728 123 G---FTVL----PYCTDD--PVLAKRLEDAGCAAVMP---------LGSPI-G------SGQGLLN--PYNLRIIIERA- 174 (248)
T ss_pred C---CEEE----EECCCC--HHHHHHHHHCCCEEEEE---------CCCCC-C------CCCCCCC--HHHHHHHHHHC-
T ss_conf 9---9897----867889--99999999749534520---------45643-4------7988799--99999999847-
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC-CHH
Q ss_conf 9748999678899999999998399975452787706-978
Q gi|254780434|r 286 PKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYE-GIS 325 (362)
Q Consensus 286 ~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~-Gp~ 325 (362)
++|+|--.||-++.||.+-|..|||+|-+-||.... .|-
T Consensus 175 -~vPvIVDAGiG~pS~Aa~aMElG~daVL~NTAIA~A~dPv 214 (248)
T cd04728 175 -DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPV 214 (248)
T ss_pred -CCCEEEECCCCCHHHHHHHHHCCCCEEEHHHHHHCCCCHH
T ss_conf -9988984799975678999872655334546877169989
No 95
>PRK13127 consensus
Probab=98.47 E-value=2.5e-05 Score=55.73 Aligned_cols=210 Identities=22% Similarity=0.246 Sum_probs=110.2
Q ss_pred ECCC-CCC--CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH--HCC
Q ss_conf 5346-888--67798887403675241020013687899886268842555410000247777788999876410--001
Q gi|254780434|r 60 MAAG-YDK--NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ--PTS 134 (362)
Q Consensus 60 lAaG-~dk--~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~--~~~ 134 (362)
+-+| +|. +.+.+..+.+.|...+|+|==...|..- .|-+. ....+++-|-+ ..+.+++-+++.+ .+.
T Consensus 17 itaG~P~~e~t~~~l~~l~~~GaDiiElGiPfSDP~AD--GPvIq-~a~~rAL~~G~-----~~~~~~~~~~~~r~~~~~ 88 (262)
T PRK13127 17 LVAGDPDPEATLEFVKALVKGGADVIELGIPFSDPVAD--GPTIQ-AADVRALSAGM-----KIDKYFELVKELRVDSSV 88 (262)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHCCC-----CHHHHHHHHHHHHCCCCC
T ss_conf 62708998999999999997699999978988887765--79999-99999997699-----799999999997456998
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 21000110454246788776555420675526983033365322110000234321111224445565531268851786
Q gi|254780434|r 135 PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFL 214 (362)
Q Consensus 135 pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~v 214 (362)
|+.+=-=.|.--...+++|.+-++..+ +|.+-+ |- +. .+...++..... ...+.++-
T Consensus 89 pivlM~Y~N~i~~~G~e~F~~~~~~~G--vdGlIi----pD---LP----~eE~~~~~~~~~----------~~gi~~I~ 145 (262)
T PRK13127 89 PLVLMTYYNPVYRYGVEKFVKKAAEAG--VSGLII----PD---LP----VEEATDLREACK----------KHGLDLVF 145 (262)
T ss_pred CEEEEECCHHHHHCCHHHHHHHHHHCC--CCEEEE----CC---CC----HHHHHHHHHHHH----------HCCCEEEE
T ss_conf 879996613887608999999998759--976996----69---99----789999999998----------55832799
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 50577774888999998764498299980665553234577544632211356454246899999997408974899967
Q gi|254780434|r 215 KISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG 294 (362)
Q Consensus 215 KLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G 294 (362)
=++|..+++.+..+++. +.|++=.=+ +.++ +|.- ..+.......++++++.+ ++| +.+|
T Consensus 146 lvaPtt~~~Ri~~i~~~-----a~gFiY~vs---~~Gv--------TG~~--~~~~~~~~~~i~~ik~~t--~~P-v~vG 204 (262)
T PRK13127 146 LVAPTTPEERLKRIDEA-----SSGFVYLVS---RLGV--------TGAR--EDVEEATFDLLKRARTTC--KNK-IAVG 204 (262)
T ss_pred EECCCCCHHHHHHHHHC-----CCCEEEEEE---CCCC--------CCCC--CCCHHHHHHHHHHHHHCC--CCC-EEEE
T ss_conf 85899989999999843-----898189984---3555--------6876--555288999999999617--998-4899
Q ss_pred -CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf -889999999999839997545278770
Q gi|254780434|r 295 -GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 295 -GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
||.+.+|+.+....|||.|=|+|+++-
T Consensus 205 FGI~~~e~v~~~~~~~aDGvIVGSaiv~ 232 (262)
T PRK13127 205 FGISKGEHAEELLDAGADGVIVGSALVD 232 (262)
T ss_pred EEECCHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 3348899999998649999998789999
No 96
>PRK13126 consensus
Probab=98.47 E-value=1.7e-05 Score=56.87 Aligned_cols=108 Identities=18% Similarity=0.211 Sum_probs=66.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 17865057777488899999876449829998066555323457754463221135645424689999999740897489
Q gi|254780434|r 211 PIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAI 290 (362)
Q Consensus 211 Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~I 290 (362)
+|++ ++|..+++.+..+++. ..|++-.. +. | ..|..+-....+.+..+++.. .++|+
T Consensus 126 ~I~l-v~ptt~~~ri~~i~~~-----s~gfiYvs----~~-----------g-vTG~~~~~~~~~~i~~ir~~~-~~~Pv 182 (237)
T PRK13126 126 PSFF-IPSKFPHRLLRRLASL-----EPDFIYLG----LY-----------A-ATGIELPVYVERNVKTIRGLA-GDVYL 182 (237)
T ss_pred EEEE-ECCCCHHHHHHHHHHH-----CCCEEEEE----EE-----------C-CCCCCCHHHHHHHHHHHHHHC-CCCCE
T ss_conf 7997-3899839999999985-----89879998----65-----------2-667641567999999999857-89977
Q ss_pred EEEC-CCCCHHHHHHHHHCCCCEEEECHHHHC---CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 9967-889999999999839997545278770---697899999999999999838
Q gi|254780434|r 291 IGTG-GISSTKDALDKIMAGANLIQLYSAMIY---EGISLPKRIIQGLSDFLNKEN 342 (362)
Q Consensus 291 Ig~G-GI~s~~Da~e~l~aGAs~VQi~Tali~---~Gp~~~~~I~~~L~~~l~~~G 342 (362)
.+| ||.|++|+.+.+..|||-|=|+|+++- ++..=..+..++|++.+++-|
T Consensus 183 -~vGFGI~t~e~~~~~~~~~aDGvIVGSaiV~~i~~~~~~~~~~v~~lr~al~el~ 237 (237)
T PRK13126 183 -VAGFAIDSPEKAARLVKAGADGVVVGTAFMRRLSSSVEEALSFLKEIRGALSELG 237 (237)
T ss_pred -EEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -9994539999999998648999998789999999755999999999999998559
No 97
>PRK13118 consensus
Probab=98.46 E-value=3.4e-05 Score=54.78 Aligned_cols=227 Identities=19% Similarity=0.223 Sum_probs=112.0
Q ss_pred ECCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHH---HHC
Q ss_conf 5346-88--86779888740367524102001368789988626884255541000024777778899987641---000
Q gi|254780434|r 60 MAAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKI---QPT 133 (362)
Q Consensus 60 lAaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~---~~~ 133 (362)
+-+| +| .+.+.++.+.+.|+..+|+|==...|..- .|-+. ...++++-| |+ ..+.+.+-+++. ..+
T Consensus 23 itaG~P~~e~t~~~~~~l~~~GaDiiElGiPfSDP~AD--GPvIq-~A~~rAL~~--G~---~~~~~~~~v~~~r~~~~~ 94 (269)
T PRK13118 23 VTAGDPSPEASVPLLHGLVAAGADVIELGMPFSDPMAD--GPAIQ-LASERALAA--GQ---GLADVLQMVREFRQGDQT 94 (269)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHC--CC---CHHHHHHHHHHHHHCCCC
T ss_conf 71718998999999999997699999978988886665--79999-999999967--98---688999999998643899
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 12100011045424678877655542067552698303336532211000023432111122444556553126885178
Q gi|254780434|r 134 SPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIF 213 (362)
Q Consensus 134 ~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~ 213 (362)
.|+++=-=.|.--.-.+++|.+.+.+.+ +|.+-+ | ++. .+...++..... ...+..+
T Consensus 95 ~PivlM~Y~N~i~~~G~e~F~~~~~~~G--vdGvIi----p---DLP----~ee~~~~~~~~~----------~~gl~~I 151 (269)
T PRK13118 95 TPVVLMGYLNPIEIYGYERFVAQAKEAG--VDGLIL----V---DLP----PEEADELRAPAQ----------AHGLDFI 151 (269)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCC--CCEEEC----C---CCC----HHHHHHHHHHHH----------HCCCCHH
T ss_conf 9989974000787863999999999859--974645----8---999----789999999999----------7598464
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 65057777488899999876449829998066555323457754463221135645424689999999740897489996
Q gi|254780434|r 214 LKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGT 293 (362)
Q Consensus 214 vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~ 293 (362)
-=++|..+++.+..+++.+ +|++-.=+ +.++ +| +...+.+...+.+.++|+.+ ++|+ .+
T Consensus 152 ~lvaPtt~~~Ri~~i~~~a-----~gFiY~vs---~~Gv--------TG--~~~~~~~~~~~~i~~ik~~t--~~Pv-~v 210 (269)
T PRK13118 152 RLTSPTTSDERLPRVLEHA-----SGYLYYVS---LAGV--------TG--AAALDTEHVEEAVARLRRHT--DLPV-VV 210 (269)
T ss_pred EEECCCCCHHHHHHHHHCC-----CCCEEEEE---CCCC--------CC--CCCCCHHHHHHHHHHHHHHC--CCCE-EE
T ss_conf 0369898789999998437-----88389985---4566--------78--77667198999999999625--8981-78
Q ss_pred C-CCCCHHHHHHHHHCCCCEEEECHHHHCC---------CHHHHHHHHHHHHHHHH
Q ss_conf 7-8899999999998399975452787706---------97899999999999999
Q gi|254780434|r 294 G-GISSTKDALDKIMAGANLIQLYSAMIYE---------GISLPKRIIQGLSDFLN 339 (362)
Q Consensus 294 G-GI~s~~Da~e~l~aGAs~VQi~Tali~~---------Gp~~~~~I~~~L~~~l~ 339 (362)
| ||.+.+||.+ +...||.|=|+|+++-. +..-+.+..++|++-++
T Consensus 211 GFGIs~~e~~~~-v~~~aDGvIVGSa~Vk~i~~~~~~~~~~~~~~~~~k~lk~al~ 265 (269)
T PRK13118 211 GFGIRDAESAAA-IARLADGVVVGSALVDAIAEAKDVDQAVERVLALLAELRQALD 265 (269)
T ss_pred EECCCCHHHHHH-HHCCCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 716799999999-9800999998589999998567826799999999999999998
No 98
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.46 E-value=6.9e-06 Score=59.48 Aligned_cols=166 Identities=16% Similarity=0.175 Sum_probs=97.3
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 12100011045424678877655542067552698303336532211000023432111122444556553126885178
Q gi|254780434|r 134 SPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIF 213 (362)
Q Consensus 134 ~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~ 213 (362)
..+-+.+|+.-.+.+.++.+ +..+||.+.+|-. .+.+++.+.++....-..+........... +.
T Consensus 74 ~~~pi~vGGGIrs~~~i~~~------l~~Ga~kvvigs~--------~~~~~~~~~~i~~~~G~~~ivvsiD~k~~~-v~ 138 (240)
T PRK13585 74 TDVSIQLGGGIRSVEDAASL------LDLGVDRVILGTA--------AIENPELVRELSDEFGSERVMVSLDAKDGE-VV 138 (240)
T ss_pred CCCCEEEECCCCCHHHHHHH------HHCCCCEEEECCC--------CHHCCHHHHHHHHHHCCCEEEEEEEEECCC-CC
T ss_conf 79778997885879999999------9769989993981--------131842889999873972179999930650-23
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 65057777488899999876449829998066555323457754463221135645424689999999740897489996
Q gi|254780434|r 214 LKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGT 293 (362)
Q Consensus 214 vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~ 293 (362)
++=--..+...+.++++.+.+.|+..+++++ ++++ |-++|+. ++.++++++.+ ++|+|++
T Consensus 139 ~~gw~~~~~~~~~e~~~~~~~~g~~eii~td--I~~d-----------Gt~~G~d-----~~~~~~i~~~~--~~pvias 198 (240)
T PRK13585 139 IEGWTESTGKDPVEWAQRFEELGAGSILFTN--VDVE-----------GLLQGVN-----PEPVRELVDSV--DIPVIAS 198 (240)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE--ECCH-----------HHHCCCC-----HHHHHHHHHHC--CCCEEEE
T ss_conf 2476567886355777888863873589864--2332-----------2325789-----89999999868--9999998
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHH
Q ss_conf 788999999999983999754527877069789999999999
Q gi|254780434|r 294 GGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLS 335 (362)
Q Consensus 294 GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~ 335 (362)
|||.+.+|..+.-.+|++.|-+++|+ |+|---++++++-++
T Consensus 199 GGv~s~~di~~l~~~g~~gvivG~Al-~~g~i~l~e~~~~~~ 239 (240)
T PRK13585 199 GGVTSLDDVKALKEAGAAGVVVGSAL-YKGKFTLEEALEAAE 239 (240)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEEHHH-HCCCCCHHHHHHHHH
T ss_conf 89999999999997899789987687-679978999999964
No 99
>PRK13139 consensus
Probab=98.46 E-value=4.1e-05 Score=54.23 Aligned_cols=208 Identities=18% Similarity=0.220 Sum_probs=97.2
Q ss_pred CCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH--HCCC
Q ss_conf 346-88--867798887403675241020013687899886268842555410000247777788999876410--0012
Q gi|254780434|r 61 AAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ--PTSP 135 (362)
Q Consensus 61 AaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~--~~~p 135 (362)
-+| +| .+-+.++.+.+.|.-.+|+|==-..|-.- .|-+. ...++++-|-+ ..+.+.+.+++.+ .+.|
T Consensus 23 taG~P~~e~s~~~~~~l~~~GaDiiElGiPFSDP~AD--GpvIq-~A~~~AL~~G~-----~~~~~~~~~~~~~~~~~~p 94 (254)
T PRK13139 23 VLGYPSLQANREVIRAMVAGGVDLMELQIPFSEPMAD--GPVIL-KANQAALAGGF-----KVRECFDFAREVVAAFNIP 94 (254)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHCCC-----CHHHHHHHHHHHHHCCCCC
T ss_conf 5848997999999999996699999978988886665--89999-99999997699-----7999999999997248976
Q ss_pred CCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 10001104542467887765554206755269830333653221100002343211112244455655312688517865
Q gi|254780434|r 136 IGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK 215 (362)
Q Consensus 136 i~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK 215 (362)
+++=-=.|.--.-.+++|.+-+++.+ +|.+-+ | ++. .+.-.++..... ...+..+-=
T Consensus 95 ivlM~Y~N~i~~~G~e~F~~~~~~~G--v~GvIi----p---DLP----~eE~~~~~~~~~----------~~gl~~I~l 151 (254)
T PRK13139 95 FLFMTYYNILFKYGVERFIDEVADIG--VKGLIV----P---DLP----PEQAQDYIAQCR----------AKGMAPIGI 151 (254)
T ss_pred EEEEEEHHHHHHCCHHHHHHHHHHCC--CCEEEC----C---CCC----HHHHHHHHHHHH----------HCCCCEEEE
T ss_conf 89995259998709999999999759--985864----7---999----788999999998----------469757999
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC-
Q ss_conf 0577774888999998764498299980665553234577544632211356454246899999997408974899967-
Q gi|254780434|r 216 ISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG- 294 (362)
Q Consensus 216 LsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G- 294 (362)
++|..+++.+..+++. ++|++=.=+ +.++. |. -..+..-....+..+++.+ ++|| ++|
T Consensus 152 vaPtt~~~Ri~~i~~~-----a~gFiY~vs---~~GvT--------G~--~~~~~~~~~~~i~~ik~~t--~~Pv-~vGF 210 (254)
T PRK13139 152 YAPTSTDERMGKIAAA-----ADGFIYCVA---RRGVT--------GS--KTSFDEHVGAFLHRCRAAT--PLPL-AVGF 210 (254)
T ss_pred ECCCCCHHHHHHHHHC-----CCCEEEEEE---CCCCC--------CC--CCCCHHHHHHHHHHHHHCC--CCCE-EEEC
T ss_conf 4589998999999851-----698699996---66667--------98--8664588999999998558--9987-9973
Q ss_pred CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 889999999999839997545278770
Q gi|254780434|r 295 GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 295 GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
||.+++|+ +.+..+||.|=|+|+++-
T Consensus 211 GI~~~e~v-~~~~~~aDGvIVGSaiVk 236 (254)
T PRK13139 211 GVKSAADV-DYLKGKADIAVVGSQAIR 236 (254)
T ss_pred CCCCHHHH-HHHHCCCCEEEECHHHHH
T ss_conf 77999999-999716999998889999
No 100
>PRK13119 consensus
Probab=98.43 E-value=5.5e-05 Score=53.40 Aligned_cols=225 Identities=20% Similarity=0.250 Sum_probs=116.8
Q ss_pred ECCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH---HC
Q ss_conf 5346-88--867798887403675241020013687899886268842555410000247777788999876410---00
Q gi|254780434|r 60 MAAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ---PT 133 (362)
Q Consensus 60 lAaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~---~~ 133 (362)
+-+| +| .+.+.++.+.+.|...+|+|==-..|..- .|-+. ...++++-|-+ ..+.+++-+++.+ .+
T Consensus 21 ltaG~P~~e~s~~~l~~l~~~GadiiElGiPFSDP~AD--GPvIq-~A~~rAL~~G~-----~~~~~~~~~~~ir~~~~~ 92 (261)
T PRK13119 21 ITVGDPDIRTTLALMHGMVANGADILELGVPFSDPMAD--GPVIQ-RAAERALANGI-----SLRDVLDVVRKFRETDTQ 92 (261)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHCCC-----CHHHHHHHHHHHHCCCCC
T ss_conf 64838998999999999996699999978988886665--89999-99999997799-----788999999986514899
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 12100011045424678877655542067552698303336532211000023432111122444556553126885178
Q gi|254780434|r 134 SPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIF 213 (362)
Q Consensus 134 ~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~ 213 (362)
.|+++=-=.|.--.-.+++|.+.+.+. ++|.+-+ |--| .+..+++..... ...+.++
T Consensus 93 ~pivlMtY~N~i~~yG~e~F~~~~~~~--GvdGvIi----pDLP-------~ee~~~~~~~~~----------~~gl~~I 149 (261)
T PRK13119 93 TPVVLMGYLNPVHKMGYREFAQEAAKA--GVDGVLT----VDSP-------VETIDPLYRELK----------DNGVDCI 149 (261)
T ss_pred CCEEEEECHHHHHHHHHHHHHHHHHHC--CCCEEEE----CCCC-------HHHHHHHHHHHH----------HCCCCEE
T ss_conf 898998403789886299999999975--9857983----6899-------788799999999----------7599764
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 65057777488899999876449829998066555323457754463221135645424689999999740897489996
Q gi|254780434|r 214 LKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGT 293 (362)
Q Consensus 214 vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~ 293 (362)
.=++|..+++.+..+++. +.|++=.=+ +.++ +|. ......-..+.++.+|+.+ ++|| ++
T Consensus 150 ~lvaPtt~~~Ri~~i~~~-----a~gFiY~vs---~~Gv--------TG~--~~~~~~~~~~~i~~ik~~t--~~Pv-~v 208 (261)
T PRK13119 150 FLIAPTTTEDRIKTIAEL-----AGGFVYYVS---LKGV--------TGA--ASLDTDEVSRKIEYLHQYI--DIPI-GV 208 (261)
T ss_pred EEECCCCCHHHHHHHHHH-----CCCEEEEEE---CCCC--------CCC--CCCCHHHHHHHHHHHHHCC--CCCE-EE
T ss_conf 430799989999999972-----898199973---6666--------687--7555488999999998636--9987-99
Q ss_pred C-CCCCHHHHHHHHHCCCCEEEECHHHHCC----C---HHHHHHHHHHHHHH
Q ss_conf 7-8899999999998399975452787706----9---78999999999999
Q gi|254780434|r 294 G-GISSTKDALDKIMAGANLIQLYSAMIYE----G---ISLPKRIIQGLSDF 337 (362)
Q Consensus 294 G-GI~s~~Da~e~l~aGAs~VQi~Tali~~----G---p~~~~~I~~~L~~~ 337 (362)
| ||.+++|+.+ +..+||.|=|+|+++-. + ..-+.+..++|++-
T Consensus 209 GFGIs~~e~v~~-~~~~aDGvIVGSaiV~~i~~~~~~~~~~v~~~vk~lk~a 259 (261)
T PRK13119 209 GFGISNAESARK-IGRVADAVIVGSRIVKEIENNAGNEAAAVGALVKELKDA 259 (261)
T ss_pred EECCCCHHHHHH-HHCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 836599999999-873499999828999999866887689999999999986
No 101
>PRK13135 consensus
Probab=98.41 E-value=9.8e-05 Score=51.73 Aligned_cols=205 Identities=19% Similarity=0.219 Sum_probs=108.5
Q ss_pred ECCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH--CC
Q ss_conf 5346-88--8677988874036752410200136878998862688425554100002477777889998764100--01
Q gi|254780434|r 60 MAAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQP--TS 134 (362)
Q Consensus 60 lAaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~--~~ 134 (362)
+-+| +| .+.+.++.+.+.|...+|+|==...|-. -.|-+. ....+++-|- -..+.+++-+++.+. +.
T Consensus 23 itaG~P~~~~s~~~l~~l~~~GaDiiElGiPfSDP~A--DGPvIq-~A~~rAL~~G-----~~~~~~~~~~~~~r~~~~~ 94 (267)
T PRK13135 23 ITAGDPDLATTEALIPLLAESGADIIELGVPFSDPMA--DGPTIQ-LSSERALAAG-----TTLPRILAMVRSVRRRCQV 94 (267)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC--CCHHHH-HHHHHHHHCC-----CCHHHHHHHHHHHHCCCCC
T ss_conf 7171899899999999999759999997899898666--589999-9999999769-----8499999999986335899
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 21000110454246788776555420675526983033365322110000234321111224445565531268851786
Q gi|254780434|r 135 PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFL 214 (362)
Q Consensus 135 pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~v 214 (362)
|+++=-=.|.--.-.+++|.+.+.+.+ +|.+-+ |--| .+...++..... ...+.++-
T Consensus 95 PivlM~Y~N~i~~yG~e~F~~~~~~~G--vdGlIi----pDLP-------~ee~~~~~~~~~----------~~~l~~I~ 151 (267)
T PRK13135 95 PIVLMGYYNPIFAYGLERFAADAAAAG--VDGVLL----VDLP-------PEEAEEFKACAD----------RHGLDVIF 151 (267)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHHCC--CCEEEC----CCCC-------HHHHHHHHHHHH----------HCCCCEEE
T ss_conf 889984230998846899999999749--974763----7899-------788899999998----------72961899
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEE----CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 50577774888999998764498299980----66555323457754463221135645424689999999740897489
Q gi|254780434|r 215 KISPDLSEEELDDIAVEVLSHKVEGIIVS----NTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAI 290 (362)
Q Consensus 215 KLsPd~~~~~i~~ia~~a~~~g~dGiv~~----NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~I 290 (362)
=++|..+++.+..+++. ..|++-. .+|+.+. .+...-.+.+..+|+.+ ++||
T Consensus 152 lvsPtt~~~Ri~~i~~~-----s~GFiY~Vs~~GvTG~~~-----------------~~~~~~~~~i~~ik~~t--~~Pv 207 (267)
T PRK13135 152 LLTPTSDESRIRTVARL-----GRGFVYYVSVTGVTGARS-----------------GVEATVGGNVAKIREKI--TVPV 207 (267)
T ss_pred EECCCCCHHHHHHHHHC-----CCCEEEEEECCCCCCCCC-----------------CCHHHHHHHHHHHHHHC--CCCE
T ss_conf 80898957999999961-----898189985456667764-----------------44488999999998606--8984
Q ss_pred EEEC-CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 9967-889999999999839997545278770
Q gi|254780434|r 291 IGTG-GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 291 Ig~G-GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
++| ||.+++|+.+ +..+||.|=|+|+++-
T Consensus 208 -~vGFGI~~~e~v~~-i~~~ADGvIVGSaiVk 237 (267)
T PRK13135 208 -VVGFGISTPQQAAD-VAAMADGVVVGSALVK 237 (267)
T ss_pred -EEEECCCCHHHHHH-HHCCCCEEEECHHHHH
T ss_conf -89816799999999-9805999998789999
No 102
>PRK13116 consensus
Probab=98.40 E-value=4.2e-05 Score=54.19 Aligned_cols=207 Identities=19% Similarity=0.226 Sum_probs=106.2
Q ss_pred CCC-CCC--CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH---HCC
Q ss_conf 346-888--67798887403675241020013687899886268842555410000247777788999876410---001
Q gi|254780434|r 61 AAG-YDK--NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ---PTS 134 (362)
Q Consensus 61 AaG-~dk--~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~---~~~ 134 (362)
-+| +|. +.+.++.+.+.|...+|+|==-..|-. -.|-+. ....+++-|-+ ..+.+++-+++.+ ++.
T Consensus 24 taG~P~~~~s~~~l~~l~~~GaDiiElGiPFSDP~A--DGPvIQ-~A~~rAL~~G~-----~~~~~~~~v~~ir~~~~~~ 95 (278)
T PRK13116 24 MLSDPSPEEAFQIISTAIEAGADALELGVPFSDPVA--DGPTVA-ESHLRALDGGA-----TVDSALEQIKRVRAAYPEV 95 (278)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC--CCHHHH-HHHHHHHHCCC-----CHHHHHHHHHHHCCCCCCC
T ss_conf 484899899999999999669999997999888566--689999-99999997698-----6789999999840358987
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 21000110454246788776555420675526983033365322110000234321111224445565531268851786
Q gi|254780434|r 135 PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFL 214 (362)
Q Consensus 135 pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~v 214 (362)
|++.---.|..-...++.|++.++..+ +|.+-+ |.-| +.+. +++..... + ..+.++.
T Consensus 96 PivlM~Y~N~i~~~G~e~F~~~~~~aG--vdGlIi----pDLP----~eE~---~~~~~~~~--------~--~~i~~I~ 152 (278)
T PRK13116 96 PIGMLIYGNVPFTRGLDRFYQEFAEAG--ADSILL----PDVP----VREG---APFSAAAA--------A--AGIDPIY 152 (278)
T ss_pred CEEEEECCCHHHHCCHHHHHHHHHHCC--CCEEEE----CCCC----HHHH---HHHHHHHH--------H--CCCCEEE
T ss_conf 689980572887727999999997769--758994----6999----7888---99999998--------6--5766699
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC--CCCCHHH-HHHHHHHHHHCCCCEEEE
Q ss_conf 5057777488899999876449829998066555323457754463221135--6454246-899999997408974899
Q gi|254780434|r 215 KISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSG--SPLFLKS-TIALAKIRQRVGPKIAII 291 (362)
Q Consensus 215 KLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG--~~i~~~a-l~~i~~i~~~~~~~i~II 291 (362)
=++|..+++.+..+++. ++|++=.=+ +. |..| ....+.. ...|..+|+.. ++||
T Consensus 153 l~~ptt~~~ri~~I~~~-----s~GFiY~VS---~~------------GvTG~~~~~~~~~l~~~i~~ik~~t--~~Pv- 209 (278)
T PRK13116 153 IAPANASEKTLEGVSAA-----SKGYIYAIS---RD------------GVTGTERESSTDGLSAVVDNIKKFD--GAPI- 209 (278)
T ss_pred EECCCCCHHHHHHHHHH-----CCCEEEEEE---CC------------CCCCCCCCCCHHHHHHHHHHHHHCC--CCCE-
T ss_conf 93799959999999971-----897399986---35------------2226886666789999999998457--9987-
Q ss_pred EEC-CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 967-889999999999839997545278770
Q gi|254780434|r 292 GTG-GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 292 g~G-GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
++| ||++++|+.+.+..+||-|=|+||++-
T Consensus 210 ~vGFGIs~~e~v~~~~~~~aDGVIVGSAiVk 240 (278)
T PRK13116 210 LLGFGISSPQHVADAIAAGASGAITGSAITK 240 (278)
T ss_pred EEECCCCCHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 9981679899999998668999998779999
No 103
>PRK13113 consensus
Probab=98.40 E-value=0.00013 Score=50.79 Aligned_cols=223 Identities=18% Similarity=0.255 Sum_probs=112.9
Q ss_pred ECCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH---HC
Q ss_conf 5346-88--867798887403675241020013687899886268842555410000247777788999876410---00
Q gi|254780434|r 60 MAAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ---PT 133 (362)
Q Consensus 60 lAaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~---~~ 133 (362)
+-+| +| .+.+.++.+.+.|...+|+|==...|..- .|-+. ...++++-|-+ ..+.+++-+++.+ ..
T Consensus 23 itaG~P~~e~s~~~~~~l~~~GaDiiElGiPFSDP~AD--GPvIq-~A~~rAL~~G~-----~~~~~~~~v~~~r~~~~~ 94 (263)
T PRK13113 23 VMAGDPDYDTSLEVMRGLPAAGVDIIELGMPFTDPMAD--GPTIQ-LAGQRALEGGM-----TLDRTLDMVRAFRKEDDT 94 (263)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHCCC-----CHHHHHHHHHHHHCCCCC
T ss_conf 73828997999999999997699999978988887765--89999-99999997798-----388999999975123899
Q ss_pred CCCCCEEECCCC-CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 121000110454-2467887765554206755269830333653221100002343211112244455655312688517
Q gi|254780434|r 134 SPIGINLGANKD-SKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPI 212 (362)
Q Consensus 134 ~pi~vsI~~~~~-s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi 212 (362)
.|+.+ .++.++ -.-.+++|++.++..+ +|.+-+ | ++. .+...++..... ...+..
T Consensus 95 ~Pivl-M~Y~N~i~~~G~e~F~~~~~~~G--vdGvIi----p---DLP----~eE~~~~~~~~~----------~~~l~~ 150 (263)
T PRK13113 95 TPIVM-MGYYNPIYSRGVDRFLAEAKEAG--IDGLIV----V---DLP----PEEDSELCLPAQ----------AAGLNF 150 (263)
T ss_pred CCEEE-EECHHHHHHHHHHHHHHHHHHCC--CCEEEE----C---CCC----HHHHHHHHHHHH----------HCCCCE
T ss_conf 88899-83136898856999999987779--436971----7---999----788899999999----------779867
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 86505777748889999987644982999806655532345775446322113564542468999999974089748999
Q gi|254780434|r 213 FLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIG 292 (362)
Q Consensus 213 ~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg 292 (362)
+-=++|..+++.+..+++.+ +|++-.=+. .++ +|. ...+..-....+.++++.+ ++|+ .
T Consensus 151 I~lvaPtt~~~Ri~~i~~~a-----~gFiY~Vs~---~Gv--------TG~--~~~~~~~~~~~i~~ik~~t--~~Pv-~ 209 (263)
T PRK13113 151 IRLATPTTDDRRLPKVLQNT-----SGFVYYVSI---TGI--------TGA--AAAQAADVAPEVARIKAAT--DLPV-I 209 (263)
T ss_pred EEEECCCCCHHHHHHHHHCC-----CCCEEEEEC---CCC--------CCC--CCCCHHHHHHHHHHHHHCC--CCCE-E
T ss_conf 99947999999999998338-----984899834---556--------687--7554377999999998547--9988-9
Q ss_pred EC-CCCCHHHHHHHHHCCCCEEEECHHHHC---CC--HHHHHHHHHHHHH
Q ss_conf 67-889999999999839997545278770---69--7899999999999
Q gi|254780434|r 293 TG-GISSTKDALDKIMAGANLIQLYSAMIY---EG--ISLPKRIIQGLSD 336 (362)
Q Consensus 293 ~G-GI~s~~Da~e~l~aGAs~VQi~Tali~---~G--p~~~~~I~~~L~~ 336 (362)
+| ||.+++|+ +.+..+||.|=|+|+++- +| +.-+.+..++|++
T Consensus 210 vGFGI~~~e~~-~~~~~~ADGvIVGSa~v~~i~e~~~~~~~~~~v~~l~~ 258 (263)
T PRK13113 210 VGFGITTPEAA-QAIAGVADGCVVGSAIVKLIGEGRPVAEVLAFVATLAD 258 (263)
T ss_pred EECCCCCHHHH-HHHHCCCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 98378998999-99973399999868999999828998999999999999
No 104
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=98.39 E-value=1.3e-05 Score=57.52 Aligned_cols=164 Identities=15% Similarity=0.169 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89998764100012100011045424678877655542067552698303336532211000023432111122444556
Q gi|254780434|r 122 TVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREE 201 (362)
Q Consensus 122 ~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~ 201 (362)
.+++++.+.. ..| +.+++.-.+.+.++.+ +..+||-+.+|=.. +.+++.+.++.+..-..+..
T Consensus 63 ~~i~~i~~~~-~~p--i~vgGGIrs~e~~~~~------l~~Ga~kvvigs~~--------~~~~~~~~~~~~~~g~q~iv 125 (229)
T pfam00977 63 DLIEEIAEEV-FIP--VQVGGGIRSLEDAERL------LSAGADKVIIGTAA--------VKNPELIKEAAEKFGSQCIV 125 (229)
T ss_pred HHHHHHHHHC-CCC--EEEECCEEEHHHHHHH------HHCCCCEEEECCCH--------HHCHHHHHHHHHHCCCCCEE
T ss_conf 9999999866-987--8996456118999999------97699899958604--------30937899999980986479
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 55312688517865057777488899999876449829998066555323457754463221135645424689999999
Q gi|254780434|r 202 EKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIR 281 (362)
Q Consensus 202 ~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~ 281 (362)
........--++.+=....+...+.++++.+.+.|+..+++++ ++++ |-++|+. +.++++++
T Consensus 126 ~siD~k~~~~v~~~~~~~~~~~~~~~~i~~~~~~g~~eii~td--i~~d-----------Gt~~G~d-----~~l~~~i~ 187 (229)
T pfam00977 126 VAIDAKRDGKVAINGWREETGIDAVEWAKKLEELGAGEILLTD--IDRD-----------GTLSGPD-----LELTRELA 187 (229)
T ss_pred EEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEE--ECCC-----------CCCCCCC-----HHHHHHHH
T ss_conf 9998714517998064335674433445677651675068877--5042-----------7566689-----99999999
Q ss_pred HHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 740897489996788999999999983999754527877069
Q gi|254780434|r 282 QRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEG 323 (362)
Q Consensus 282 ~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~G 323 (362)
+.. ++|+|++|||.+.+|..+....|++.|-++|+| |+|
T Consensus 188 ~~~--~~pii~~GGv~~~~di~~l~~~g~~gvivg~al-~~g 226 (229)
T pfam00977 188 EAV--NIPVIASGGVGSLEDLKELFSEGVDGVIAGSAL-HEG 226 (229)
T ss_pred HHC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHH-HCC
T ss_conf 768--998999858999999999998799899985786-687
No 105
>pfam05690 ThiG Thiazole biosynthesis protein ThiG. This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway.
Probab=98.39 E-value=0.00011 Score=51.39 Aligned_cols=210 Identities=17% Similarity=0.193 Sum_probs=119.8
Q ss_pred EECCEECCCCEEECCCCCCCHHHH-HHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHH
Q ss_conf 888733599748534688867798-8874036752410200136878998862688425554100002477777889998
Q gi|254780434|r 48 KVAGISLSNPLGMAAGYDKNAEVP-IELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSR 126 (362)
Q Consensus 48 ~~~Gl~~~nPiglAaG~dk~~~~~-~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~ 126 (362)
++.|.+|.+.+.+..|--++.+.+ +.+...|.--| ||..+ | +.+.+.+-+.+++.
T Consensus 1 ~I~~~~f~SRL~lGTgky~s~~~~~~ai~aSg~eiv---TVAlR-----------R----------~~~~~~~~~~~l~~ 56 (246)
T pfam05690 1 KIGGKTFDSRLLLGTGKYPSPEVLKEAIRASGAEIV---TVALR-----------R----------VNAGQPGGENFLDL 56 (246)
T ss_pred CCCCEEEECCEEEECCCCCCHHHHHHHHHHHCCCEE---EEEEE-----------E----------ECCCCCCCCHHHHH
T ss_conf 938888674447873899999999999999689779---98986-----------3----------05888884258886
Q ss_pred HHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76410001210001104542467887765554206755269830-33365322110000234321111224445565531
Q gi|254780434|r 127 LSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTIN-ISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIK 205 (362)
Q Consensus 127 l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiN-iSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~ 205 (362)
++..+ ..+--|-.+-.+.+|++. .+++.+++.. .|.+-|- ++-|+ .|........++.+.....
T Consensus 57 i~~~~--~~iLPNTAGc~tA~EAVr-~A~laRE~~~-t~wIKLEVi~D~~-----------~LlPD~~etl~Aae~Lv~e 121 (246)
T pfam05690 57 LDWLG--ITLLPNTAGCRTAEEAVR-TARLAREAFG-TNWIKLEVIGDSK-----------TLLPDPIETLKAAEILVKE 121 (246)
T ss_pred HHHCC--CEECCCCCCCCCHHHHHH-HHHHHHHHCC-CCEEEEEEECCCC-----------CCCCCHHHHHHHHHHHHHC
T ss_conf 41338--667776301188999999-9999999709-9748999826988-----------7798878999999999978
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 26885178650577774888999998764498299980665553234577544632211356454246899999997408
Q gi|254780434|r 206 TGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVG 285 (362)
Q Consensus 206 ~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~ 285 (362)
. .-|+. +.+++ ..+++.+++.|+..+-- +-.+. | ||..|.. ...++.+++..
T Consensus 122 G---F~Vlp----Y~~~D--~v~akrLed~Gc~avMP---------lgsPI-----G--Sg~Gl~n--~~~l~~i~e~~- 173 (246)
T pfam05690 122 G---FTVLP----YTTDD--PVLARRLEEAGCAAVMP---------LGAPI-----G--SGLGLRN--PENLRIIIEEA- 173 (246)
T ss_pred C---CEEEE----ECCCC--HHHHHHHHHCCCEEEEE---------CCCCC-----C--CCCCCCC--HHHHHHHHHHC-
T ss_conf 9---98988----61799--89999998759849862---------24401-----3--6888689--99999999967-
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-CCHH
Q ss_conf 974899967889999999999839997545278770-6978
Q gi|254780434|r 286 PKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY-EGIS 325 (362)
Q Consensus 286 ~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~-~Gp~ 325 (362)
++|+|--.||-++.||.+-|..|||+|-+-||... +.|-
T Consensus 174 -~vPvIVDAGiG~pS~Aa~aMElG~DaVLvNTAIA~A~dPv 213 (246)
T pfam05690 174 -DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPV 213 (246)
T ss_pred -CCCEEEECCCCCHHHHHHHHHCCCCEEEHHHHHHCCCCHH
T ss_conf -9988984898967889999974567777306777379989
No 106
>PRK13122 consensus
Probab=98.37 E-value=4.1e-05 Score=54.24 Aligned_cols=225 Identities=18% Similarity=0.167 Sum_probs=115.5
Q ss_pred CEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH--CC
Q ss_conf 7485346888677988874036752410200136878998862688425554100002477777889998764100--01
Q gi|254780434|r 57 PLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQP--TS 134 (362)
Q Consensus 57 PiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~--~~ 134 (362)
|++ .+++| .-+.++.+.+.|+..+|+|==-..|..- .|-+. ...++++-|- -..+.+.+.+++.+. +.
T Consensus 7 pyi-~g~pd-~~~~~~~l~~~GaDiiElGiPfSDP~AD--GpvIQ-~A~~rAL~~G-----~~~~~~~~~l~~~r~~~~~ 76 (242)
T PRK13122 7 PYI-MGNKD-LIENATLLSENGADIIEIGVPFSDPVAD--GPVIM-EAGQQAIKQG-----ITIDYIFNQLEKHGDQIKC 76 (242)
T ss_pred EEE-CCCCC-HHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHCC-----CCHHHHHHHHHHHCCCCCC
T ss_conf 762-68999-9999999997599999978988886665--89999-9999999769-----9899999999973136798
Q ss_pred CCCCEEECCCCC--HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 210001104542--467887765554206755269830333653221100002343211112244455655312688517
Q gi|254780434|r 135 PIGINLGANKDS--KDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPI 212 (362)
Q Consensus 135 pi~vsI~~~~~s--~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi 212 (362)
|++ ++.-.+. .-..+.|.+.+.+. ++|.+-+ |--| . +.-.++.... .+ ..+..
T Consensus 77 piv--lM~Y~N~i~~~G~~~F~~~~~~~--GvdGvIi----pDLP------~-ee~~~~~~~~--------~~--~gi~~ 131 (242)
T PRK13122 77 NYV--LMTYYNIICHYGEQAFFEKCRDT--GVYGLII----PDLP------Y-ELSQRLKQQF--------SH--YGVKI 131 (242)
T ss_pred CEE--EEEECHHHHHHCHHHHHHHHHHC--CCCEEEC----CCCC------H-HHHHHHHHHH--------HH--CCCCE
T ss_conf 779--99851698872799999999876--9986777----8998------7-8899999999--------86--79868
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 86505777748889999987644982999806655532345775446322113564542468999999974089748999
Q gi|254780434|r 213 FLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIG 292 (362)
Q Consensus 213 ~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg 292 (362)
+-=++|..+++.+..+++.+ +|++=.=+ +.++... -..+.+...+.+..+|+.. ++|| .
T Consensus 132 I~lvaPtt~~~Ri~~i~~~s-----~GFiY~vs---~~GvTG~----------~~~~~~~~~~~i~~ik~~t--~~Pv-~ 190 (242)
T PRK13122 132 ISLVAMTTDDKRIKDIVSHA-----EGFIYTVT---MNATTGQ----------NGAFHPELKRKIESIKAIA--NVPV-V 190 (242)
T ss_pred EEEECCCCCHHHHHHHHHHC-----CCCEEEEE---CCCCCCC----------CCCCCHHHHHHHHHHHHHC--CCCE-E
T ss_conf 98718999899999999829-----99669873---3543576----------5556588999999999725--9985-8
Q ss_pred EC-CCCCHHHHHHHHHCCCCEEEECHHHHC----CCHHHHHHHHHHHHHHH
Q ss_conf 67-889999999999839997545278770----69789999999999999
Q gi|254780434|r 293 TG-GISSTKDALDKIMAGANLIQLYSAMIY----EGISLPKRIIQGLSDFL 338 (362)
Q Consensus 293 ~G-GI~s~~Da~e~l~aGAs~VQi~Tali~----~Gp~~~~~I~~~L~~~l 338 (362)
+| ||.+++|+.+. ..+||.|=|+|+++- +++.-+.+-.++|++-|
T Consensus 191 vGFGI~~~e~v~~i-~~~ADGvIVGSaivk~i~~~~~e~~~~~i~~l~~aL 240 (242)
T PRK13122 191 AGFGIRTPQHVADI-KEVADGIVIGSEIVKRFKSNTREEIIKYLQSIQQTL 240 (242)
T ss_pred EECCCCCHHHHHHH-HHHCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 71587999999999-811999998489999999679899999999999985
No 107
>PRK13123 consensus
Probab=98.36 E-value=9.9e-05 Score=51.69 Aligned_cols=208 Identities=21% Similarity=0.178 Sum_probs=109.9
Q ss_pred CCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 346-88--867798887403675241020013687899886268842555410000247777788999876410001210
Q gi|254780434|r 61 AAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIG 137 (362)
Q Consensus 61 AaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~ 137 (362)
-+| +| .+.+.++.+.+.|+..+|+|==-..|..- .|-+. ...++++-|-+ ..+.+++.+++.+.+.|+.
T Consensus 22 taG~P~~~~~~~~i~~l~~~GaDiiElGiPFSDPvAD--GPvIq-~A~~rAL~~G~-----~~~~~~~~~~~~~~~~Piv 93 (256)
T PRK13123 22 MAGDGGLDGLKETIRFLEEAGVSAIEIGIPFSDPVAD--GPVIQ-LAGLRALASGV-----SLKAILQALIEKETQIPLV 93 (256)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHCCC-----CHHHHHHHHHHCCCCCCEE
T ss_conf 1868997899999999997699999978998886665--79999-98999986799-----6999998876305799889
Q ss_pred CEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 00110454246788776555420675526983033365322110000234321111224445565531268851786505
Q gi|254780434|r 138 INLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKIS 217 (362)
Q Consensus 138 vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLs 217 (362)
+=-=.|.--.-.+++|.+-+++.+ +|.+-+ |.-| .+...++..... ...+..+-=++
T Consensus 94 lMtY~N~i~~yG~e~F~~~~~~~G--vdGvIi----pDLP-------~eE~~~~~~~~~----------~~gi~~I~lia 150 (256)
T PRK13123 94 IMTYINPVFQYGIERFVEDLAETG--VKGLII----PDLP-------YEHQDFIAPLLR----------DTDIALIPLVS 150 (256)
T ss_pred EEEHHHHHHHCCHHHHHHHHHHCC--CCEEEC----CCCC-------HHHHHHHHHHHH----------HCCCCEEEECC
T ss_conf 740425898718999999999749--978973----7999-------678999999999----------76997786408
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC-CC
Q ss_conf 77774888999998764498299980665553234577544632211356454246899999997408974899967-88
Q gi|254780434|r 218 PDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG-GI 296 (362)
Q Consensus 218 Pd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G-GI 296 (362)
|..+++.+..+++.+ +|++=.=+ +.++. |. -..+.+.....++.+++.+ ++|+ ++| ||
T Consensus 151 Ptt~~~Ri~~i~~~a-----~GFiY~Vs---~~GvT--------G~--~~~~~~~~~~~i~~ik~~t--~~Pv-~vGFGI 209 (256)
T PRK13123 151 LTSPIERQKEIIKEA-----EGFIYAVA---VNGVT--------GK--RGNYRDDLDSHLEKLKSIA--HIPV-LAGFGI 209 (256)
T ss_pred CCCCHHHHHHHHHCC-----CCCEEEEE---CCCCC--------CC--CCCCHHHHHHHHHHHHHCC--CCCE-EEECCC
T ss_conf 999388999998607-----88489974---45566--------76--5333388999999998568--9987-997688
Q ss_pred CCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 9999999999839997545278770
Q gi|254780434|r 297 SSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 297 ~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
++.+|+.+. ...||.|=|+|+++-
T Consensus 210 s~~e~v~~~-~~~aDGvIVGSaiv~ 233 (256)
T PRK13123 210 STLEDVERF-NAVCDGVIVGSKIVE 233 (256)
T ss_pred CCHHHHHHH-HHHCCEEEEHHHHHH
T ss_conf 999999999-713999997299999
No 108
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=98.36 E-value=7.3e-05 Score=52.58 Aligned_cols=210 Identities=19% Similarity=0.223 Sum_probs=111.1
Q ss_pred ECCC-CCC--CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH---HC
Q ss_conf 5346-888--67798887403675241020013687899886268842555410000247777788999876410---00
Q gi|254780434|r 60 MAAG-YDK--NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ---PT 133 (362)
Q Consensus 60 lAaG-~dk--~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~---~~ 133 (362)
+-+| +|. +.+.++.+.+.|...+|+|==-..|-. -.|-+. ....+++-|- -.++.+++.+++.+ .+
T Consensus 15 i~aG~P~~~~~~~~i~~l~~~GaDiiEiGiPFSDP~A--DGpvIq-~A~~~AL~~G-----~~~~~~~~~~~~~r~~~~~ 86 (258)
T pfam00290 15 VTAGDPDLETTLEILEALEEAGADAIELGIPFSDPLA--DGPTIQ-RANLRALAGG-----MTLDQTLELVEEIRNKGTS 86 (258)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC--CCHHHH-HHHHHHHHCC-----CCHHHHHHHHHHHHHCCCC
T ss_conf 7073899899999999999769999997899888766--589999-9999999869-----9699999999985512899
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 12100011045424678877655542067552698303336532211000023432111122444556553126885178
Q gi|254780434|r 134 SPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIF 213 (362)
Q Consensus 134 ~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~ 213 (362)
.|+++=-=.|.--.-..+.|.+.+++.+ +|.+-+ |.-| .+...++..... ...+.++
T Consensus 87 ~pivlM~Y~N~i~~~G~e~F~~~~~~~G--vdGvIi----pDLP-------~eE~~~~~~~~~----------~~~l~~I 143 (258)
T pfam00290 87 VPIVLMTYYNPVLNYGIERFYAQAAEAG--VDGLII----PDLP-------PEEADPLREAAE----------KHGIDLI 143 (258)
T ss_pred CCEEEEEECHHHHHCCHHHHHHHHHHCC--CCEEEC----CCCC-------HHHHHHHHHHHH----------HCCCCEE
T ss_conf 8889985208898729999999999759--977870----7999-------889999999998----------4584358
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 65057777488899999876449829998066555323457754463221135645424689999999740897489996
Q gi|254780434|r 214 LKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGT 293 (362)
Q Consensus 214 vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~ 293 (362)
-=++|..+++.+..+++.+ +|++-.=+ +.++ +| +...+.+.-...++.+|+.. ++||...
T Consensus 144 ~lvsPtt~~~Ri~~i~~~s-----~gFiY~vs---~~Gv--------TG--~~~~~~~~~~~~i~~ik~~t--~~Pv~vG 203 (258)
T pfam00290 144 FLVAPTTSDERLKTISEAA-----SGFVYLVS---RAGV--------TG--ARNAFNAQLDELVERLKKYT--NVPVAVG 203 (258)
T ss_pred EEECCCCCHHHHHHHHHHC-----CCEEEEEE---CCCC--------CC--CCCCCCHHHHHHHHHHHHCC--CCCEEEE
T ss_conf 8845888199999999608-----98089985---3445--------67--65556388999999998606--9984899
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 7889999999999839997545278770
Q gi|254780434|r 294 GGISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 294 GGI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
=||++.+|+.+. ..+||.|=++|+++-
T Consensus 204 FGIs~~e~v~~~-~~~aDGvIVGSaiv~ 230 (258)
T pfam00290 204 FGISTPEHVKKI-AAGADGVIVGSAIVD 230 (258)
T ss_pred ECCCCHHHHHHH-HCCCCEEEECHHHHH
T ss_conf 457999999999-815999998499999
No 109
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.32 E-value=0.00021 Score=49.47 Aligned_cols=212 Identities=17% Similarity=0.206 Sum_probs=121.1
Q ss_pred EEECCEECCCCEEECCCCCCCHHHH-HHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHH
Q ss_conf 6888733599748534688867798-887403675241020013687899886268842555410000247777788999
Q gi|254780434|r 47 TKVAGISLSNPLGMAAGYDKNAEVP-IELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFS 125 (362)
Q Consensus 47 ~~~~Gl~~~nPiglAaG~dk~~~~~-~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~ 125 (362)
-++.|.+|+|.+.+..|--++.+.+ +.+...|.--| ||..+ | +.+.+.+-+.+++
T Consensus 2 l~I~~~~f~SRLilGTgky~s~~~~~~ai~aSg~eiv---TVAlR-----------R----------~~~~~~~~~~~l~ 57 (256)
T PRK00208 2 LTIAGKTFSSRLLLGTGKYPSPEVMQEAIEASGAEIV---TVALR-----------R----------VNLGDPGGDNLLD 57 (256)
T ss_pred CEECCEEEECCEEEECCCCCCHHHHHHHHHHHCCCEE---EEEEE-----------E----------ECCCCCCCHHHHH
T ss_conf 1899999774347864899999999999999689779---99986-----------4----------2477898505888
Q ss_pred HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87641000121000110454246788776555420675526983033365322110000234321111224445565531
Q gi|254780434|r 126 RLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIK 205 (362)
Q Consensus 126 ~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~ 205 (362)
.++.. +..+--|-.+-.+.+|++. .+++.+++.. .|.+-|-+- .|+..|........++.+.....
T Consensus 58 ~i~~~--~~~lLPNTAGc~ta~EAVr-~A~laRE~~~-tnwIKLEVi----------~D~~~LlPD~~etl~Aae~Lv~e 123 (256)
T PRK00208 58 LLDPL--GVTLLPNTAGCRTAEEAVR-TARLAREALG-TDWIKLEVI----------GDDKTLLPDPIETLKAAEILVKE 123 (256)
T ss_pred HHCCC--CCEECCCCCCCCCHHHHHH-HHHHHHHHHC-CCEEEEEEE----------CCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 74315--8567666403267999999-9999999848-986999981----------79767798868999999999988
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 26885178650577774888999998764498299980665553234577544632211356454246899999997408
Q gi|254780434|r 206 TGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVG 285 (362)
Q Consensus 206 ~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~ 285 (362)
. .-|+ |+.+++ .-+++.+++.|+..+-- +-.+. . ||..|.. ...++.++++.
T Consensus 124 G---F~Vl----pY~~~D--~v~akrLe~~Gc~avMP---------lgsPI-G------Sg~Gl~n--~~~l~~i~e~~- 175 (256)
T PRK00208 124 G---FVVL----PYCTDD--PVLAKRLEEAGCAAVMP---------LGAPI-G------SGLGLLN--PYNLRIIIEQA- 175 (256)
T ss_pred C---CEEE----EECCCC--HHHHHHHHHCCCEEEEE---------CCCCC-C------CCCCCCC--HHHHHHHHHHC-
T ss_conf 9---9897----867889--89999999749534520---------45643-4------7988799--99999999867-
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-CCHH
Q ss_conf 974899967889999999999839997545278770-6978
Q gi|254780434|r 286 PKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY-EGIS 325 (362)
Q Consensus 286 ~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~-~Gp~ 325 (362)
++|+|---||-++.||.+-|..|||+|-+-||... +.|-
T Consensus 176 -~vPvIVDAGiG~pS~Aa~AMElG~DaVL~NTAIA~A~dPv 215 (256)
T PRK00208 176 -DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPV 215 (256)
T ss_pred -CCCEEEECCCCCHHHHHHHHHCCCCEEEHHHHHHCCCCHH
T ss_conf -9988985788976678999862554323556877269989
No 110
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.31 E-value=2.2e-05 Score=56.15 Aligned_cols=86 Identities=23% Similarity=0.290 Sum_probs=65.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 57777488899999876449829998066555323457754463221135645424689999999740897489996788
Q gi|254780434|r 217 SPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGI 296 (362)
Q Consensus 217 sPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI 296 (362)
++.++++++...++.+.++|+|.|=- .| |--+ ...+.+.|+.+++..++++.|-++|||
T Consensus 130 t~~Lt~~ei~~a~~~~~~aGadfvKT-ST----------------Gf~~----~gat~e~v~~m~~~~~~~~giKasGGI 188 (221)
T PRK00507 130 TCLLTDEEKVKACEICKEAGADFVKT-ST----------------GFST----GGATVEDVKLMRETVGPRVGVKASGGI 188 (221)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEE-CC----------------CCCC----CCCCHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 46599999999999999829787860-58----------------8788----998999999999972878638677898
Q ss_pred CCHHHHHHHHHCCCCEEEECHHHHCCCHHHHH
Q ss_conf 99999999998399975452787706978999
Q gi|254780434|r 297 SSTKDALDKIMAGANLIQLYSAMIYEGISLPK 328 (362)
Q Consensus 297 ~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~ 328 (362)
.+.+||.+|+.+||+-+...+ |+.++.
T Consensus 189 rt~~~a~~~l~aGa~riGtS~-----~~~i~~ 215 (221)
T PRK00507 189 RTLEDALAMIEAGATRLGTSA-----GVAILE 215 (221)
T ss_pred CCHHHHHHHHHHCCHHCCCCC-----HHHHHH
T ss_conf 999999999982751321675-----899995
No 111
>PRK13121 consensus
Probab=98.30 E-value=0.00023 Score=49.20 Aligned_cols=208 Identities=20% Similarity=0.268 Sum_probs=103.9
Q ss_pred CCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHH---HHCC
Q ss_conf 346-88--86779888740367524102001368789988626884255541000024777778899987641---0001
Q gi|254780434|r 61 AAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKI---QPTS 134 (362)
Q Consensus 61 AaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~---~~~~ 134 (362)
-+| +| .+.+.++.+.+.|...+|+|==-..|-.- .|-+. ....+++-|-+ ..+.+++-+++. ..+.
T Consensus 24 taG~P~~~~s~~~~~~l~~~GaDiiElGiPfSDP~AD--GPvIq-~A~~rAL~~G~-----~~~~~~~~~~~~r~~~~~~ 95 (265)
T PRK13121 24 TAGDPDPAKTVELMHALVEGGADVIELGVPFSDPMAD--GPVIQ-RASERALAHGV-----SLRQVLAMVKEFRETNQTT 95 (265)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHCCC-----CHHHHHHHHHHHHCCCCCC
T ss_conf 0718998999999999997699999978988997765--89999-99999997799-----8467799999831037999
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 21000110454246788776555420675526983033365322110000234321111224445565531268851786
Q gi|254780434|r 135 PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFL 214 (362)
Q Consensus 135 pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~v 214 (362)
|+++=-=.|.--.-.+++|.+.+...+ +|.+-+ |--| .|...++...... ..+..+.
T Consensus 96 PivlM~Y~N~i~~yG~e~F~~~~~~aG--vdGlIi----pDLP-------~eE~~~~~~~~~~----------~gl~~I~ 152 (265)
T PRK13121 96 PVVLMGYANPIERMGYDAFAAAARAAG--VDGVLV----VDYP-------PEECEEFAAKMRA----------AGIDPIF 152 (265)
T ss_pred CEEEEEHHHHHHHHHHHHHHHHHHHCC--CCEEEC----CCCC-------HHHHHHHHHHHHH----------CCCCEEE
T ss_conf 989862145999971999999998729--873434----8999-------8999999999986----------5996689
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 50577774888999998764498299980665553234577544632211356454246899999997408974899967
Q gi|254780434|r 215 KISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG 294 (362)
Q Consensus 215 KLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G 294 (362)
=++|..+++.+..+++. .+|++-.=+ +.++. |. .....+.....+..+|+.+ ++|+ ++|
T Consensus 153 lvaPtt~~~Ri~~i~~~-----~~gFiY~Vs---~~GvT--------G~--~~~~~~~~~~~i~~ik~~t--~~Pv-~vG 211 (265)
T PRK13121 153 LLAPTSTDERIAAVARV-----ASGYVYYVS---LKGVT--------GA--ATLDVSSVAAKLPAIRSHV--PLPV-GVG 211 (265)
T ss_pred EECCCCCHHHHHHHHHH-----CCCEEEEEE---CCCCC--------CC--CCCCHHHHHHHHHHHHHCC--CCCE-EEE
T ss_conf 95899989999999962-----898099975---55566--------77--7566288999999998547--9985-997
Q ss_pred -CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf -889999999999839997545278770
Q gi|254780434|r 295 -GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 295 -GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
||.+.+||.+ +..+||.|=|+|+++-
T Consensus 212 FGIs~~e~~~~-v~~~ADGvIVGSaiV~ 238 (265)
T PRK13121 212 FGIRDAATARA-VAEVADAVVIGSRLVQ 238 (265)
T ss_pred CCCCCHHHHHH-HHHCCCEEEECHHHHH
T ss_conf 68898999999-9811999998489999
No 112
>TIGR00742 yjbN TIM-barrel protein, yjbN family; InterPro: IPR004653 This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) although NifR3 itself, a protein of unknown function associated with nitrogen regulation in Rhodobacter capsulatus, is not a member of this branch. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA . They show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=98.28 E-value=8.3e-06 Score=58.95 Aligned_cols=201 Identities=18% Similarity=0.211 Sum_probs=134.5
Q ss_pred HHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC--CCEEEEECCCC-----CCC-CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 7641000121000110454246788776555420675--52698303336-----532-211000023432111122444
Q gi|254780434|r 127 LSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTI--ASYFTINISSP-----NTP-GLRSLQKKKNLERLLIHVMQT 198 (362)
Q Consensus 127 l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~--aD~iEiNiSCP-----Nt~-g~~~~~~~~~l~~~l~~v~~~ 198 (362)
|+-.....||-+-||++. -++..+|++....+ =|=+-||+.|| |.. |--.|..++.+.+.+.+..+
T Consensus 48 l~~~~~E~PvAlQlgg~d-----p~~l~~ca~i~e~h~gydEiNLNVGCPSdrvQng~fGACLMg~a~lVa~cv~~M~~- 121 (326)
T TIGR00742 48 LKFSPEEKPVALQLGGSD-----PNDLAKCAKIAEKHRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQE- 121 (326)
T ss_pred HCCCCCCCCEEEEECCCC-----HHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHHHHH-
T ss_conf 501767786578507898-----89999999999864587422156688312220444111111682368999999897-
Q ss_pred HHHHHHHCCCCCEEEEEC-------CCC---CCHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 556553126885178650-------577---77488899999876449-829998066555323457754463221135-
Q gi|254780434|r 199 REEEKIKTGKFVPIFLKI-------SPD---LSEEELDDIAVEVLSHK-VEGIIVSNTTLSRKGVQCSDNHEQDGGLSG- 266 (362)
Q Consensus 199 ~~~~~~~~~~~~Pi~vKL-------sPd---~~~~~i~~ia~~a~~~g-~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG- 266 (362)
.+.+||-||- |.| -+-+++.++++.+...| +.-+++ -+|... --|||=
T Consensus 122 --------~v~iPvtvK~RiGId~~ssdykndSYe~l~~Fv~~v~~~Gec~~Fiv----HARkAw--------L~GlSPK 181 (326)
T TIGR00742 122 --------AVEIPVTVKHRIGIDELSSDYKNDSYEELCDFVEIVSGKGECQNFIV----HARKAW--------LSGLSPK 181 (326)
T ss_pred --------HCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHH----HHHHHH--------HCCCCCC
T ss_conf --------15788224201475644332232337899999998617886113468----789998--------5788862
Q ss_pred --CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf --645424689999999740897489996788999999999983999754527877069789999999999999983899
Q gi|254780434|r 267 --SPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362)
Q Consensus 267 --~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362)
+.|=|.-=..|+++++.. +++.|-=-|||.+-|++.+.|-- -|.|+||.+ .|+-|.++..+-+++-. +.+-.-
T Consensus 182 eNR~IPpL~y~~VYqLKkdf-p~L~i~INGGI~~~E~~k~HL~~-vD~VMvGR~-Ay~NP~l~A~~dr~~~~--~~~~~~ 256 (326)
T TIGR00742 182 ENREIPPLRYERVYQLKKDF-PHLTIEINGGIKNSEQIKQHLSH-VDGVMVGRE-AYENPYLLANVDREIFN--ETDEIL 256 (326)
T ss_pred CCCCCCCCCCHHHHHHHCCC-CCCEEEECCCCCCHHHHHHHHHH-HHHHHHCHH-HHHCHHHHHHHHHHHHC--CCCCCC
T ss_conf 25787798724677652003-21056335785535999976556-431130224-30052689999899707--787777
Q ss_pred CHHHHHCCCCHHHH
Q ss_conf 77896169752664
Q gi|254780434|r 345 NFENIRGSYTEYWA 358 (362)
Q Consensus 345 si~e~iG~~~~~~~ 358 (362)
+-.|++-+.++|--
T Consensus 257 ~~~~i~~~M~pYie 270 (326)
T TIGR00742 257 TRKEIVEQMLPYIE 270 (326)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 97999998679999
No 113
>PRK13120 consensus
Probab=98.27 E-value=0.00028 Score=48.66 Aligned_cols=209 Identities=22% Similarity=0.265 Sum_probs=105.3
Q ss_pred ECCC-CCC--CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHH---HHC
Q ss_conf 5346-888--6779888740367524102001368789988626884255541000024777778899987641---000
Q gi|254780434|r 60 MAAG-YDK--NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKI---QPT 133 (362)
Q Consensus 60 lAaG-~dk--~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~---~~~ 133 (362)
+-|| +|. +.+.++.+.+.|...+|+|==-..|-.- .|-+. ....+++-| |++ .+.+++-+++. ...
T Consensus 27 itaG~P~~~~t~~~l~~l~~~GaDiiElGiPFSDPvAD--GPvIQ-~A~~rAL~~--G~~---l~~vl~~v~~~r~~~~~ 98 (285)
T PRK13120 27 IAAGDPSPQATVPLMHALVRAGADLVELGVPFSDPMAD--GPVVQ-RAAERAIAQ--GVG---LRRVLELVADFRRDDSV 98 (285)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHC--CCC---HHHHHHHHHHHHHCCCC
T ss_conf 57858998999999999997699999978987874566--89999-999999976--998---44699999998734898
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 12100011045424678877655542067552698303336532211000023432111122444556553126885178
Q gi|254780434|r 134 SPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIF 213 (362)
Q Consensus 134 ~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~ 213 (362)
.|+.+=-=.|.--.-..+.|.+-+++.+ +|.+-| | ++. .+.-.++..... ...+.++
T Consensus 99 ~PivlM~Y~Npi~~yG~e~F~~~~~~aG--vdGlII----p---DLP----~EE~~~~~~~~~----------~~gi~~I 155 (285)
T PRK13120 99 TPVVLMGYANPIERMGQRAFAQAAQAAG--VDGVLV----V---DYP----PEEVDEFAAMLA----------EAGVAPI 155 (285)
T ss_pred CCEEEEEHHHHHHHHHHHHHHHHHHHCC--CCEEEC----C---CCC----HHHHHHHHHHHH----------HCCCCEE
T ss_conf 8889861054999987999999999839--877964----7---999----799999999999----------6699658
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 65057777488899999876449829998066555323457754463221135645424689999999740897489996
Q gi|254780434|r 214 LKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGT 293 (362)
Q Consensus 214 vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~ 293 (362)
-=++|..+++.+..+++.+ .|++=.=+ +.++ +| +...+.......+..+++.+ ++|| ++
T Consensus 156 ~LiaPtT~~eRi~~I~~~s-----~GFvY~VS---~~GV--------TG--~~~~~~~~l~~~i~~ik~~t--~~Pv-~v 214 (285)
T PRK13120 156 FLLAPTSTEARIEAIGRVA-----RGYVYYVS---LKGV--------TG--AGSLDTDDVARKLALIRRHV--HIPV-GV 214 (285)
T ss_pred EEECCCCCHHHHHHHHHHC-----CCCEEEEE---CCCC--------CC--CCCCCHHHHHHHHHHHHHCC--CCCE-EE
T ss_conf 9957999899999999508-----98189986---5654--------68--87556688999999999726--9975-99
Q ss_pred C-CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 7-889999999999839997545278770
Q gi|254780434|r 294 G-GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 294 G-GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
| ||.+++||.+. ...||.|=|+|+++-
T Consensus 215 GFGIs~~e~v~~~-~~~ADGvIVGSAiVk 242 (285)
T PRK13120 215 GFGIRDAASAQRI-AAHADAVVIGSKLIE 242 (285)
T ss_pred EECCCCHHHHHHH-HCCCCEEEECHHHHH
T ss_conf 9625989999999-702999998789999
No 114
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.25 E-value=0.00022 Score=49.38 Aligned_cols=209 Identities=22% Similarity=0.293 Sum_probs=107.5
Q ss_pred ECCC-CCC--CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH--HCC
Q ss_conf 5346-888--67798887403675241020013687899886268842555410000247777788999876410--001
Q gi|254780434|r 60 MAAG-YDK--NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ--PTS 134 (362)
Q Consensus 60 lAaG-~dk--~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~--~~~ 134 (362)
+-+| +|. +.+.++.+.+.|...+|+|==-..|.. -.|-+. ....+++-|- -..+.+.+-+++.+ .+.
T Consensus 15 ~taG~P~~e~~~~~~~~l~~~Gad~iEiGiPfSDP~a--DGpvIq-~a~~~AL~~G-----~~~~~~f~~~~~~r~~~~~ 86 (256)
T PRK13111 15 ITAGDPDLETSLEILKALVEAGADIIELGIPFSDPVA--DGPVIQ-RASLRALAAG-----VTLADVLELLREIRAKPTI 86 (256)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC--CCHHHH-HHHHHHHHCC-----CCHHHHHHHHHHHHCCCCC
T ss_conf 7070899899999999999659999997888788766--579999-9999999779-----9699999999998606899
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 21000110454246788776555420675526983033365322110000234321111224445565531268851786
Q gi|254780434|r 135 PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFL 214 (362)
Q Consensus 135 pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~v 214 (362)
|+++=-=.|.--.-.+++|.+.+++.+ +|.+-+ |--| .+...++..+..+ ..+..+-
T Consensus 87 pivlM~Y~N~i~~~G~e~F~~~~~~~G--vdGvIi----pDLP-------~eE~~~~~~~~~~----------~gi~~I~ 143 (256)
T PRK13111 87 PIVLMTYYNPIFQYGVEAFAADAAEAG--VDGLII----PDLP-------PEEAEEFRAAAKK----------HGIDLIF 143 (256)
T ss_pred CEEEEEECCHHHHHCHHHHHHHHHHCC--CCEEEE----CCCC-------HHHHHHHHHHHHH----------CCCEEEE
T ss_conf 889985030898709999999999759--977981----6999-------7888999999997----------5980899
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 50577774888999998764498299980665553234577544632211356454246899999997408974899967
Q gi|254780434|r 215 KISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG 294 (362)
Q Consensus 215 KLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G 294 (362)
=++|..+++.+..+++.+ +|++=.=+ +.++. | . ...+...-...+.++|+.. ++||. +|
T Consensus 144 lvaPtt~~~Ri~~i~~~s-----~gfiY~vs---~~GvT--------G-~-~~~~~~~~~~~i~~ik~~t--~~Pi~-vG 202 (256)
T PRK13111 144 LVAPTTTDERLKKIASHA-----SGFVYYVS---RAGVT--------G-A-RSADAADVADLLARLKAHT--DLPVA-VG 202 (256)
T ss_pred EECCCCCHHHHHHHHHHC-----CCEEEEEE---CCCCC--------C-C-CCCCHHHHHHHHHHHHHCC--CCCEE-EE
T ss_conf 969999889999999626-----98599985---67767--------8-8-7666288999999998706--89758-85
Q ss_pred -CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf -889999999999839997545278770
Q gi|254780434|r 295 -GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 295 -GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
||.+++|+.+.. .|||.|=++|+++-
T Consensus 203 FGIs~~e~v~~~~-~~aDGvIVGSaiv~ 229 (256)
T PRK13111 203 FGISTPEQAAAIA-EGADGVIVGSALVK 229 (256)
T ss_pred CCCCCHHHHHHHH-CCCCEEEECHHHHH
T ss_conf 2889999999997-45999998689999
No 115
>PRK13134 consensus
Probab=98.23 E-value=0.00024 Score=49.13 Aligned_cols=204 Identities=18% Similarity=0.219 Sum_probs=101.1
Q ss_pred CCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH--CCC
Q ss_conf 346-88--8677988874036752410200136878998862688425554100002477777889998764100--012
Q gi|254780434|r 61 AAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQP--TSP 135 (362)
Q Consensus 61 AaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~--~~p 135 (362)
-+| +| .+.+.++.+.+.|.-.+|+|==...|..- .|-+. -...+++-|-+ ..+.+++.+++.+. +.|
T Consensus 26 taG~P~~e~s~~~i~~l~~~GaDiiEiGiPfSDP~AD--GPvIq-~A~~rAL~~G~-----~~~~~~~~~~~~~~~~~~p 97 (257)
T PRK13134 26 TAGFPTSERFWDELEALDAAGADIIEVGVPFSDPVAD--GPVVA-AASQRALESGV-----TLRWIMDGLAARKGRLRAG 97 (257)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHCCC-----CHHHHHHHHHHHHCCCCCC
T ss_conf 0707997999999999997799999978988887655--89999-99999996799-----8789999999874468999
Q ss_pred CCCEEECCCC--CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 1000110454--24678877655542067552698303336532211000023432111122444556553126885178
Q gi|254780434|r 136 IGINLGANKD--SKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIF 213 (362)
Q Consensus 136 i~vsI~~~~~--s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~ 213 (362)
+++ +...+ -.-.+++|.+.+.+.+ +|.+-+ |.-| +.+.+.+. ..+. ...+.++
T Consensus 98 ivl--MtY~N~i~~yG~e~F~~~~~~aG--vdGvIi----pDLP----~eE~~~~~---~~~~----------~~gi~~I 152 (257)
T PRK13134 98 LVL--MGYLNPFMQYGFERFVRDAADAG--VAGCII----PDLP----LDEDADLR---ALLA----------ARGMDLI 152 (257)
T ss_pred EEE--EECCHHHHHHHHHHHHHHHHHCC--CCEEEE----CCCC----HHHHHHHH---HHHH----------HCCCCEE
T ss_conf 899--85345999746899999998679--875994----6999----77889999---9999----------7598269
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 650577774888999998764498299980665553234577544632211356--454246899999997408974899
Q gi|254780434|r 214 LKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGS--PLFLKSTIALAKIRQRVGPKIAII 291 (362)
Q Consensus 214 vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~--~i~~~al~~i~~i~~~~~~~i~II 291 (362)
-=++|..+++.+..+++. ..|++=.=+ +. |..|. .+.......+.++++.+ ++|+
T Consensus 153 ~lvaPtt~~~Ri~~i~~~-----s~gFIY~vs---~~------------GvTG~~~~~~~~~~~~i~~ik~~t--~~Pv- 209 (257)
T PRK13134 153 ALVGPNTGEGRMREYAAV-----ASGYVYVVS---VM------------GTTGVRDGLPVEVADTLARARQCF--SIPV- 209 (257)
T ss_pred EECCCCCCHHHHHHHHHH-----CCCEEEEEE---CC------------CCCCCCCCCHHHHHHHHHHHHHHC--CCCE-
T ss_conf 963899999999999962-----888089984---35------------566876455288999999999706--9987-
Q ss_pred EEC-CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 967-889999999999839997545278770
Q gi|254780434|r 292 GTG-GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 292 g~G-GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
.+| ||.+++|+ +.+..+||.|=|+|+++-
T Consensus 210 ~vGFGIs~~e~v-~~~~~~aDGvIVGSaiVk 239 (257)
T PRK13134 210 ALGFGISRPAQL-EGLSHPPDAVIFGSALLR 239 (257)
T ss_pred EEECCCCCHHHH-HHHHCCCCEEEECHHHHH
T ss_conf 998067999999-999703999998799999
No 116
>PRK13138 consensus
Probab=98.23 E-value=0.00017 Score=50.08 Aligned_cols=207 Identities=18% Similarity=0.195 Sum_probs=110.6
Q ss_pred ECCC-CCC--CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHH---HHC
Q ss_conf 5346-888--6779888740367524102001368789988626884255541000024777778899987641---000
Q gi|254780434|r 60 MAAG-YDK--NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKI---QPT 133 (362)
Q Consensus 60 lAaG-~dk--~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~---~~~ 133 (362)
+-+| +|. +.+.++.+.+.|...+|+|==-..|.. -.|-+. -..++++-|-+ ..+.+++-+++. ..+
T Consensus 19 itaG~P~~e~t~~~~~~l~~~GadiiEiGiPFSDP~A--DGPvIq-~A~~rAL~~G~-----~~~~~~~~~~~ir~~~~~ 90 (264)
T PRK13138 19 ISLGDPDYDSCIIWADALIRGGAGILELGIPFSDPVA--DGPVIQ-KAFKRALAHPF-----SMDKILEITAEIHKLHPE 90 (264)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC--CCHHHH-HHHHHHHHCCC-----CHHHHHHHHHHHCCCCCC
T ss_conf 6787999899999999999779998997998888666--589999-99999997799-----088974467760335898
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 12100011045424678877655542067552698303336532211000023432111122444556553126885178
Q gi|254780434|r 134 SPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIF 213 (362)
Q Consensus 134 ~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~ 213 (362)
.|++.--=.|.--.-.+++|.+.++..+ +|.+-+ | ++. .+.+...++...+. ...+.++
T Consensus 91 ~pivlM~Y~N~i~~~G~e~F~~~~~~~G--vdGlIi----p---DLP--~e~~E~~~~~~~~~----------~~~i~~I 149 (264)
T PRK13138 91 IPLVYLTYFNPLFSMGLEAFTERAKNSG--IQGLII----P---DLP--FDTPEAEEFFSQLE----------RKKIDFI 149 (264)
T ss_pred CCEEEEEEHHHHHHHCHHHHHHHHHHCC--CCEEEC----C---CCC--CCCHHHHHHHHHHH----------HCCCCEE
T ss_conf 8889752123898848999999998769--775853----6---898--65033599999999----------8699867
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEE----CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 650577774888999998764498299980----6655532345775446322113564542468999999974089748
Q gi|254780434|r 214 LKISPDLSEEELDDIAVEVLSHKVEGIIVS----NTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIA 289 (362)
Q Consensus 214 vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~----NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~ 289 (362)
.=++|..+++.+..+++.+ +|++=. .+|+.+. .+.......+..+|+.+ ++|
T Consensus 150 ~liaPtt~~~Ri~~i~~~s-----~gFiY~Vs~~GvTG~~~-----------------~~~~~~~~~i~~ik~~t--~~P 205 (264)
T PRK13138 150 HLVTPATTEDRIQSMKSFA-----SGFIYYVTSYGVTGERG-----------------AIASGLEDRIQMVRKIV--GLP 205 (264)
T ss_pred EECCCCCCHHHHHHHHHHC-----CCEEEEEECCCCCCCCC-----------------CCCHHHHHHHHHHHHHC--CCC
T ss_conf 5217999899999999738-----88089875456678765-----------------55376999999999743--898
Q ss_pred EEEEC-CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 99967-889999999999839997545278770
Q gi|254780434|r 290 IIGTG-GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 290 IIg~G-GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
+ ++| ||.+++|+.+ +..+||.|=++|+++-
T Consensus 206 v-~vGFGIs~~e~~~~-~~~~ADGvIVGSaiv~ 236 (264)
T PRK13138 206 V-CAGFGISTADQAKE-ISTYADGVIIGSAVQK 236 (264)
T ss_pred E-EEEECCCCHHHHHH-HHHCCCEEEECHHHHH
T ss_conf 3-88606798999999-9834999998199999
No 117
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.23 E-value=6.7e-05 Score=52.82 Aligned_cols=173 Identities=17% Similarity=0.195 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89998764100012100011045424678877655542067552698303336532211000023432111122444556
Q gi|254780434|r 122 TVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREE 201 (362)
Q Consensus 122 ~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~ 201 (362)
.+++++.+ ...+-+.+|+.--+.+.++. .+..+||-+.+|=.. +.+++.+.++....-. +..
T Consensus 63 ~~I~~i~~---~~~~pi~vGGGIrs~e~~~~------~l~~GadkVvigS~a--------~~n~~~i~~~~~~~g~-~iv 124 (241)
T PRK00748 63 ELIEAIVA---AVDIPVQLGGGIRDLETVEA------YLDAGVARVIIGTAA--------VKNPELVKEACKKFPG-RIV 124 (241)
T ss_pred HHHHHHHH---HCCCCEEEECCCCCHHHHHH------HHHCCCCEEEECCHH--------HHCHHHHHHHHHHCCC-CEE
T ss_conf 99999998---67999998277074999999------997697758864710--------3396899999862355-579
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 55312688517865057777488899999876449829998066555323457754463221135645424689999999
Q gi|254780434|r 202 EKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIR 281 (362)
Q Consensus 202 ~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~ 281 (362)
........ -+..+=--..+.-.+.++++.+.+.|+..+++++ +++++ -++|+. +..++.++
T Consensus 125 vsiD~k~~-~v~~~gw~~~t~~~~~~~i~~~~~~G~~eii~td--I~~DG-----------t~~G~d-----~~l~~~i~ 185 (241)
T PRK00748 125 VGLDARDG-KVATRGWQEVSGVDLEDLAKRFEDAGVAAIIYTD--ISRDG-----------TLSGPN-----VELTRELA 185 (241)
T ss_pred EEEEECCC-EEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE--EECCC-----------CCCCCC-----HHHHHHHH
T ss_conf 99982166-5401575546797489999999855875699988--70568-----------547689-----99999999
Q ss_pred HHCCCCEEEEEECCCCCHHHHHHHHHC---CCCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 740897489996788999999999983---99975452787706978999999999
Q gi|254780434|r 282 QRVGPKIAIIGTGGISSTKDALDKIMA---GANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 282 ~~~~~~i~IIg~GGI~s~~Da~e~l~a---GAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
+.+ ++|+|++|||.|.+|..+.... |.+.|-+++|+ |+|---+++.++.+
T Consensus 186 ~~~--~ipviasGGv~s~~Di~~L~~~~~~gv~gviiG~Al-y~g~i~l~eal~~~ 238 (241)
T PRK00748 186 AAT--PIPVIASGGVSSLDDIRALKALGPEGVEGVIVGKAL-YEGKFDLAEALACW 238 (241)
T ss_pred HHC--CCCEEEECCCCCHHHHHHHHHCCCCCCCEEEEEHHH-HCCCCCHHHHHHHH
T ss_conf 868--998999889999999999986031792489987898-77998999999986
No 118
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.23 E-value=0.00058 Score=46.50 Aligned_cols=215 Identities=18% Similarity=0.166 Sum_probs=118.7
Q ss_pred EEEECCEECCCCEEECCCCCCCHHHHH-HHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHH
Q ss_conf 168887335997485346888677988-8740367524102001368789988626884255541000024777778899
Q gi|254780434|r 46 NTKVAGISLSNPLGMAAGYDKNAEVPI-ELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVF 124 (362)
Q Consensus 46 ~~~~~Gl~~~nPiglAaG~dk~~~~~~-~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~ 124 (362)
.-++.|.+|++.+.+..|--++.+.++ .+...|.--| ||..+ |... + .+.+.+.++
T Consensus 7 ~l~I~g~~f~SRLilGTgkY~s~~~~~~ai~aSgaeiV---TVAlR-----------R~~~--------~-~~~~~~~~l 63 (267)
T CHL00162 7 PLKIGNKSFNSRLMLGTGKYRNLEEAINSIEASGCEIV---TVAIR-----------RAQN--------N-KLNGNSSLL 63 (267)
T ss_pred CEEECCEEEECCEEEECCCCCCHHHHHHHHHHHCCCEE---EEEEE-----------CCCC--------C-CCCCHHHHH
T ss_conf 66999999885327872899999999999999699879---99973-----------2557--------7-888746787
Q ss_pred HHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHC-----CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9876410001210001104542467887765554206-----75526983033365322110000234321111224445
Q gi|254780434|r 125 SRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFF-----TIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTR 199 (362)
Q Consensus 125 ~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~-----~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~ 199 (362)
+.++..+ ..+--|-.+-.+.+|++. .+++.|++. ...+.+-|-+ ..|+..|........++.
T Consensus 64 ~~i~~~~--~~~LPNTAGc~taeEAVr-~A~lAREl~~~~g~~~tnwIKLEV----------i~D~~tLlPD~~etl~Aa 130 (267)
T CHL00162 64 DGLDWNK--LWLLPNTAGCQTAEEAIR-VAFLGRELAKQLGQEDNNFVKLEV----------IPDPKYLLPDPIGTLKAA 130 (267)
T ss_pred HHCCCCC--EEECCCCCCCCCHHHHHH-HHHHHHHHHHHCCCCCCCEEEEEE----------ECCCCCCCCCHHHHHHHH
T ss_conf 4337024--178566302287999999-999999985301567897799998----------279877798878999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 56553126885178650577774888999998764498299980665553234577544632211356454246899999
Q gi|254780434|r 200 EEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAK 279 (362)
Q Consensus 200 ~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~ 279 (362)
+...... .-|+ |+.+++ .-+++.+++.|+..+-- +-.+. . ||..|.. ...++.
T Consensus 131 e~Lv~eG---F~Vl----pY~~dD--~v~akrLe~~Gc~avMP---------lgsPI-G------Sg~Gl~n--~~~l~~ 183 (267)
T CHL00162 131 EFLVRKG---FTVL----PYINAD--PVLAKQLEDIGCATVMP---------LGSPI-G------SGQGLQN--LLNLQI 183 (267)
T ss_pred HHHHHCC---CEEE----EECCCC--HHHHHHHHHCCCEEEEE---------CCCCC-C------CCCCCCC--HHHHHH
T ss_conf 9999789---9998----954899--89999998659868863---------45512-3------6887589--999999
Q ss_pred HHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-CCHH
Q ss_conf 997408974899967889999999999839997545278770-6978
Q gi|254780434|r 280 IRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY-EGIS 325 (362)
Q Consensus 280 i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~-~Gp~ 325 (362)
+++. .++|+|--.||-++.||.+-|..|||+|-+-||... +.|-
T Consensus 184 i~e~--~~vPvIVDAGiG~pSdAa~aMElG~DaVL~NTAIA~A~dPv 228 (267)
T CHL00162 184 IIEN--AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAKAKNPE 228 (267)
T ss_pred HHHC--CCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHH
T ss_conf 9964--89988996898967888999974677787016767169989
No 119
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.22 E-value=2.9e-05 Score=55.33 Aligned_cols=138 Identities=22% Similarity=0.211 Sum_probs=82.8
Q ss_pred HCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 06755269830333653221100002343211112244455655312688517865057777488899999876449829
Q gi|254780434|r 160 FFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEG 239 (362)
Q Consensus 160 ~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dG 239 (362)
+..++|.+.+|-.. +.+++.+.++....-............. -+..+--.+.+.-.+.++++.+.+.|+..
T Consensus 92 ~~~Ga~kvvi~s~~--------~~~~~~~~~~~~~~G~q~iv~slD~k~~-~~~~~~~~~~~~~~~~~~i~~~~~~g~ge 162 (234)
T cd04732 92 LDLGVSRVIIGTAA--------VKNPELVKELLKEYGGERIVVGLDAKDG-KVATKGWLETSEVSLEELAKRFEELGVKA 162 (234)
T ss_pred HHCCCCEEEECCCH--------HHCHHHHHHHHHHCCCCCEEEEEEEECC-CHHCCCCCEEECCCHHHHHHHHHHCCCCE
T ss_conf 86488718971401--------1082789999998297646999997512-00016864001351699999997458646
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf 99806655532345775446322113564542468999999974089748999678899999999998399975452787
Q gi|254780434|r 240 IIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAM 319 (362)
Q Consensus 240 iv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tal 319 (362)
+++++ ++++ |-++|+- ++.+.++++.. ++|+|++|||.+.+|..+...+|++.|-++|||
T Consensus 163 iilt~--i~~d-----------Gt~~G~d-----~~ll~~i~~~~--~~p~i~~GGv~s~~di~~l~~~g~~gvivgsAl 222 (234)
T cd04732 163 IIYTD--ISRD-----------GTLSGPN-----FELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGVIVGKAL 222 (234)
T ss_pred EEEEE--ECCC-----------CCCCCCC-----HHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHCCCCEEEEEHHH
T ss_conf 99876--4256-----------6535689-----99999998657--998999818999999999997799899998898
Q ss_pred HCCCHHHH
Q ss_conf 70697899
Q gi|254780434|r 320 IYEGISLP 327 (362)
Q Consensus 320 i~~Gp~~~ 327 (362)
|+|---+
T Consensus 223 -h~g~i~~ 229 (234)
T cd04732 223 -YEGKITL 229 (234)
T ss_pred -HCCCCCH
T ss_conf -7799898
No 120
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=98.22 E-value=0.00049 Score=47.02 Aligned_cols=215 Identities=15% Similarity=0.111 Sum_probs=121.5
Q ss_pred CCEEEECCEECCCCEEECCCCCCCHHH-HHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHH
Q ss_conf 311688873359974853468886779-8887403675241020013687899886268842555410000247777788
Q gi|254780434|r 44 RLNTKVAGISLSNPLGMAAGYDKNAEV-PIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHT 122 (362)
Q Consensus 44 ~L~~~~~Gl~~~nPiglAaG~dk~~~~-~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~ 122 (362)
+=+-.+.|.+|.+.+.+..|--++.+. .+.+...|.--| ||..+ | +.+.+++-+.
T Consensus 73 ~D~l~i~G~~f~SRL~~GTgky~s~~~~~~ai~aSgaeiv---TVAlR-----------R----------~~~~~~~~~~ 128 (327)
T PRK11840 73 DDSWTVAGKTFSSRLLVGTGKYKDFEETAAAVEASGAEIV---TVAVR-----------R----------VNVSDPGAPM 128 (327)
T ss_pred CCCEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCEE---EEEEE-----------E----------ECCCCCCCCH
T ss_conf 9976899988880178765899999999999998589769---99997-----------4----------2378889605
Q ss_pred HHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99987641000121000110454246788776555420675526983033365322110000234321111224445565
Q gi|254780434|r 123 VFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEE 202 (362)
Q Consensus 123 ~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~ 202 (362)
+++.++..+ ..+--|-.+-.+.+|++. .+++.+++. ..+.+-|-+ ..|+..|........++....
T Consensus 129 ~l~~i~~~~--~~~LPNTAGc~ta~eAvr-~a~lARe~~-~t~~iKLEV----------i~D~~tL~Pd~~etl~Aae~L 194 (327)
T PRK11840 129 LTDYIDPKK--YTYLPNTAGCFTAEDAVR-TLRLAREAG-GWDLVKLEV----------LGDQKTLYPDMVETLKAAEVL 194 (327)
T ss_pred HHHHCCCCC--CEECCCCCCCCCHHHHHH-HHHHHHHHC-CCCEEEEEE----------ECCCCCCCCCHHHHHHHHHHH
T ss_conf 776418027--779985657788999999-999999855-998589998----------079766799858999999999
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 53126885178650577774888999998764498299980665553234577544632211356454246899999997
Q gi|254780434|r 203 KIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQ 282 (362)
Q Consensus 203 ~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~ 282 (362)
.... .-++ |+.+++ .-+++.+++.|+..+-- +-.+. . ||..|.. ...++.+++
T Consensus 195 v~eG---F~Vl----pY~~dD--pv~akrLed~Gc~avMP---------lgsPI-G------Sg~Gi~n--~~~i~~i~e 247 (327)
T PRK11840 195 VKEG---FQVM----VYCSDD--PIAAKRLEDAGAVAVMP---------LGAPI-G------SGLGIQN--PYTIRLIVE 247 (327)
T ss_pred HHCC---CEEE----EEECCC--HHHHHHHHHCCCEEEEE---------CCCCC-C------CCCCCCC--HHHHHHHHH
T ss_conf 9789---8898----871698--68999998759838862---------24523-4------7888689--999999997
Q ss_pred HCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-CCHH
Q ss_conf 408974899967889999999999839997545278770-6978
Q gi|254780434|r 283 RVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY-EGIS 325 (362)
Q Consensus 283 ~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~-~Gp~ 325 (362)
.. ++|+|---||-++.||.+.|..|+|+|-+-||... +.|-
T Consensus 248 ~~--~vpvivDAGiG~pS~A~~aMElG~daVL~NTAiA~a~~Pv 289 (327)
T PRK11840 248 GA--KVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPI 289 (327)
T ss_pred HC--CCCEEEECCCCCHHHHHHHHHCCCCEEEHHHHHHCCCCHH
T ss_conf 36--9978995798987899999863666666336767269979
No 121
>PRK13132 consensus
Probab=98.21 E-value=0.00019 Score=49.75 Aligned_cols=210 Identities=17% Similarity=0.162 Sum_probs=107.3
Q ss_pred CEEECCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 7485346-88--86779888740367524102001368789988626884255541000024777778899987641000
Q gi|254780434|r 57 PLGMAAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPT 133 (362)
Q Consensus 57 PiglAaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~ 133 (362)
|. +-+| +| .+.+.++.+.+.|...+|+|==...|-. -.|-+. ....+++-|- -..+.+.+-+++.+.+
T Consensus 15 ~y-itaG~P~~e~s~~~~~~l~~~GaDiiEiGiPfSDP~a--DGPvIq-~A~~~AL~~G-----~~~~~~~~~~~~ir~~ 85 (246)
T PRK13132 15 GY-IVAGYPNLETTKEFLQRLDESPLDILELGIPYSDPLA--DGKLIA-DASFIALQQG-----VNTDTVFELLARVKTK 85 (246)
T ss_pred EE-EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC--CCHHHH-HHHHHHHHCC-----CCHHHHHHHHHHHCCC
T ss_conf 78-8285899899999999999749998997898888765--589999-9999998779-----9899999999975369
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 12100011045424678877655542067552698303336532211000023432111122444556553126885178
Q gi|254780434|r 134 SPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIF 213 (362)
Q Consensus 134 ~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~ 213 (362)
.|+++=--.|..-...+++|.+.+.+.+ +|.+-+ |.-| .+...++...... . .+.++
T Consensus 86 ~pivlM~Y~N~i~~~G~e~F~~~~~~~G--vdGlIi----pDLP-------~ee~~~~~~~~~~--------~--~i~~I 142 (246)
T PRK13132 86 KALVFLVYYNLIFAYGLEKFVKKAKELG--ISGLIV----PDLP-------FEESEELIKECEK--------Y--NIALI 142 (246)
T ss_pred CCEEEEEECHHHHHCCHHHHHHHHHHCC--CCEEEC----CCCC-------HHHHHHHHHHHHH--------C--CCCEE
T ss_conf 9979996010887729999999998769--985775----7999-------7898999999998--------5--99701
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 65057777488899999876449829998066555323457754463221135645424689999999740897489996
Q gi|254780434|r 214 LKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGT 293 (362)
Q Consensus 214 vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~ 293 (362)
-=++| .+.+.+..+++. ++|++-.=+ +.++. |.- ....+.-...+..+++.. +.|+ .+
T Consensus 143 ~lvaP-Ts~~R~~~i~~~-----s~gfiY~vs---~~GvT--------G~~--~~~~~~~~~~i~~ik~~t--~~Pv-~v 200 (246)
T PRK13132 143 PLISV-TSPKRAKKILKH-----AKGFIYALG---SIGVT--------GTK--SVEEARLKDKVKEIKSFT--DLPV-AV 200 (246)
T ss_pred EEECC-CCHHHHHHHHHC-----CCCCEEEEE---CCCCC--------CCC--CCCHHHHHHHHHHHHHCC--CCCE-EE
T ss_conf 44257-978999999954-----898279975---35677--------776--663688999999999628--9986-99
Q ss_pred C-CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 7-889999999999839997545278770
Q gi|254780434|r 294 G-GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 294 G-GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
| ||.+++|+.. +..+||.|=++|+++-
T Consensus 201 GFGI~~~e~v~~-~~~~aDGvIVGSa~v~ 228 (246)
T PRK13132 201 GFGIKNNQDVKR-MRKYADGVIVGTSIVK 228 (246)
T ss_pred ECCCCCHHHHHH-HHHCCCEEEECHHHHH
T ss_conf 779899999999-9822999997099999
No 122
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.20 E-value=0.00026 Score=48.84 Aligned_cols=209 Identities=22% Similarity=0.282 Sum_probs=111.5
Q ss_pred ECCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH--CC
Q ss_conf 5346-88--8677988874036752410200136878998862688425554100002477777889998764100--01
Q gi|254780434|r 60 MAAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQP--TS 134 (362)
Q Consensus 60 lAaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~--~~ 134 (362)
+-+| ++ .+.+.++.+.+.|...+|+|==...|-.- .|-+. ...++++-| | -..+.+.+-+++.+. +.
T Consensus 6 ~taG~P~~~~~~~~~~~l~~~G~d~iEiGiPfsDP~aD--GpvIq-~A~~~aL~~--g---~~~~~~~~~~~~~r~~~~~ 77 (242)
T cd04724 6 ITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVAD--GPVIQ-AASERALAN--G---VTLKDVLELVKEIRKKNTI 77 (242)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHC--C---CCHHHHHHHHHHHHHCCCC
T ss_conf 73778997999999999997699999978998887765--89999-999999976--9---9499999999998734798
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 21000110454246788776555420675526983033365322110000234321111224445565531268851786
Q gi|254780434|r 135 PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFL 214 (362)
Q Consensus 135 pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~v 214 (362)
|+++=-=.|.--....++|.+.+++.+ +|.+-+ |--|- +....+..... ...+..+-
T Consensus 78 pivlM~Y~N~i~~~G~e~F~~~~~~~G--v~Gvii----pDLP~-------ee~~~~~~~~~----------~~~i~~I~ 134 (242)
T cd04724 78 PIVLMGYYNPILQYGLERFLRDAKEAG--VDGLII----PDLPP-------EEAEEFREAAK----------EYGLDLIF 134 (242)
T ss_pred CEEEEEECHHHHHHCHHHHHHHHHHCC--CCEEEE----CCCCH-------HHHHHHHHHHH----------HCCCEEEE
T ss_conf 889998445766528999999999759--975870----69995-------78468999998----------65983889
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 50577774888999998764498299980665553234577544632211356454246899999997408974899967
Q gi|254780434|r 215 KISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG 294 (362)
Q Consensus 215 KLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G 294 (362)
=++|..+++.+..+++. ++|++-.=+. .++. | +...+..-..+.+.++|+.. ++|| .+|
T Consensus 135 lvsPtt~~~ri~~i~~~-----s~gfiY~vs~---~GvT--------G--~~~~~~~~~~~~i~~ik~~t--~~Pv-~vG 193 (242)
T cd04724 135 LVAPTTPDERIKKIAEL-----ASGFIYYVSR---TGVT--------G--ARTELPDDLKELIKRIRKYT--DLPI-AVG 193 (242)
T ss_pred EECCCCCHHHHHHHHHH-----CCCEEEEEEC---CCCC--------C--CCCCCHHHHHHHHHHHHHHC--CCCE-EEE
T ss_conf 96898878999999974-----7984999857---7777--------8--77556499999999998716--8974-874
Q ss_pred -CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf -889999999999839997545278770
Q gi|254780434|r 295 -GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 295 -GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
||.+++|+.+.... ||.|=++|+++-
T Consensus 194 FGI~~~e~v~~~~~~-aDGvIVGSa~V~ 220 (242)
T cd04724 194 FGISTPEQAAEVAKY-ADGVIVGSALVK 220 (242)
T ss_pred CCCCCHHHHHHHHHH-CCEEEECHHHHH
T ss_conf 387999999999965-999998789999
No 123
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.18 E-value=7.9e-05 Score=52.33 Aligned_cols=162 Identities=17% Similarity=0.197 Sum_probs=93.5
Q ss_pred HHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99987641000121000110454246788776555420675526983033365322110000234321111224445565
Q gi|254780434|r 123 VFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEE 202 (362)
Q Consensus 123 ~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~ 202 (362)
+++++.+ ...+-+.+|+.--+.+.++. .+..++|.+.||=. .+.+++.+.++....-. +...
T Consensus 67 ~I~~i~~---~~~~~iqvGGGIRs~e~i~~------~l~~G~~rViigT~--------a~~~~~~l~~~~~~f~~-~Ivv 128 (234)
T PRK13587 67 YIKSLRR---LTTKDIEVGGGIRTKSQIMD------YFAAGINYCIVGTK--------GIQDTDWLKEMAHTFPG-RIYL 128 (234)
T ss_pred HHHHHHH---HCCCCEEEECCCCCHHHHHH------HHHCCCCEEEECCC--------CCCCHHHHHHHHHHCCC-CEEE
T ss_conf 9999984---37986798465475999999------99768999998881--------30286999999986667-7687
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 53126885178650577774888999998764498299980665553234577544632211356454246899999997
Q gi|254780434|r 203 KIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQ 282 (362)
Q Consensus 203 ~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~ 282 (362)
....... -+.++=--..+.-.+.++++.+.+.|+..+++++ +++++ -++|+- +..++++.+
T Consensus 129 ~iD~~~~-~v~~~GW~~~s~~~~~d~~~~~~~~g~~~il~Td--I~rDG-----------tl~G~n-----~el~~~i~~ 189 (234)
T PRK13587 129 SVDAYGE-DIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTD--IAKDG-----------KMSGPN-----FELTGQLVK 189 (234)
T ss_pred EEECCCC-EEEECCCCEECCCCHHHHHHHHHHCCCCEEEEEC--CCCCC-----------CCCCCC-----HHHHHHHHH
T ss_conf 1202385-4544575142586799999999743987899840--26657-----------455799-----999999997
Q ss_pred HCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCH
Q ss_conf 408974899967889999999999839997545278770697
Q gi|254780434|r 283 RVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGI 324 (362)
Q Consensus 283 ~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp 324 (362)
.. ++|+|++|||.|-+|..+.-.+|.+-|=++.|+ |+|-
T Consensus 190 ~~--~~pvIaSGGv~sl~Di~~L~~~gv~GvIvGkAl-Yeg~ 228 (234)
T PRK13587 190 AT--TIPVIASGGIRHQQDIQRLASLNVHAAIIGKAA-HQAS 228 (234)
T ss_pred HC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEEEEC-CCCC
T ss_conf 67--999999899899999999998899899999750-1782
No 124
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=98.17 E-value=3.2e-05 Score=54.99 Aligned_cols=138 Identities=22% Similarity=0.278 Sum_probs=86.5
Q ss_pred HHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC----CEEEEECCC-CCCHHHHHHHHHHH
Q ss_conf 4206755269830333653221100002343211112244455655312688----517865057-77748889999987
Q gi|254780434|r 158 RLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKF----VPIFLKISP-DLSEEELDDIAVEV 232 (362)
Q Consensus 158 ~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~----~Pi~vKLsP-d~~~~~i~~ia~~a 232 (362)
+.+..+++.+.|- --.+.+++.+.+.+...-..+.......... +-|.++ .+ .-+.-...++++..
T Consensus 90 ~ll~~Gv~RVI~G--------T~A~~~~~~v~~~~~~~g~~~i~V~lD~~~g~~G~~~V~v~-GW~E~s~~~~~~~~~~~ 160 (241)
T TIGR00007 90 KLLDLGVDRVIIG--------TAAVENPDLVKELLKEYGPERIVVSLDARDGEEGVKEVAVK-GWKEKSEVSLEELAKRL 160 (241)
T ss_pred HHHHCCCCEEEEE--------EEEECCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEE-EEECCCCCCHHHHHHHH
T ss_conf 9997398579973--------32210869999999984899659998631488751788874-04113562799999998
Q ss_pred HHCC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH--CC
Q ss_conf 6449-82999806655532345775446322113564542468999999974089748999678899999999998--39
Q gi|254780434|r 233 LSHK-VEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIM--AG 309 (362)
Q Consensus 233 ~~~g-~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~--aG 309 (362)
++.| +.+|+.|+ +++++ -|+|+-. ...+++.+++ .++++|++|||+|-+|+...-. .|
T Consensus 161 ~~~G~~~~ii~Td--I~~DG-----------tl~G~n~-----~~~~~~~~~~-~~~~viaSGGv~s~~D~~~L~~~~~G 221 (241)
T TIGR00007 161 EELGELEGIIYTD--ISRDG-----------TLSGPNF-----ELTKELVKAL-VNVPVIASGGVSSIDDLRALKEIELG 221 (241)
T ss_pred HHCCCCCEEEEEE--EECCC-----------CEECCCC-----CHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 5158633689975--20067-----------2007873-----2889999873-58418994265788999999971598
Q ss_pred CCEEEECHHHHCCCH
Q ss_conf 997545278770697
Q gi|254780434|r 310 ANLIQLYSAMIYEGI 324 (362)
Q Consensus 310 As~VQi~Tali~~Gp 324 (362)
.+-|=|++|| |+|-
T Consensus 222 ~~GvIvGkAL-Y~g~ 235 (241)
T TIGR00007 222 VYGVIVGKAL-YEGK 235 (241)
T ss_pred CCEEEEEEEE-CCCC
T ss_conf 3279986211-1688
No 125
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.16 E-value=5.5e-05 Score=53.40 Aligned_cols=208 Identities=16% Similarity=0.176 Sum_probs=113.0
Q ss_pred CCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHH
Q ss_conf 87335997485346888677988874036752410200136878998862688425554100002477777889998764
Q gi|254780434|r 50 AGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSK 129 (362)
Q Consensus 50 ~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~ 129 (362)
-|..|++..-+ | | =.+..+.|.+.|+-.+.+=-+ . .+.- |-+ --..+++++.+
T Consensus 19 k~~~~~~~~~~--g-d-P~~~ak~~~~~g~d~lhivDl--d----------------~a~~---~~~--~n~~~I~~i~~ 71 (232)
T TIGR03572 19 KTVQFKDPRYI--G-D-PVNAARIYNAKGADELIVLDI--D----------------ASKR---GRE--PLFELISNLAE 71 (232)
T ss_pred ECCCCCCCEEC--C-C-HHHHHHHHHHCCCCEEEEEEC--C----------------CCCC---CCC--CHHHHHHHHHH
T ss_conf 78478776578--8-9-999999999869999999968--7----------------6434---882--17999999999
Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-
Q ss_conf 1000121000110454246788776555420675526983033365322110000234321111224445565531268-
Q gi|254780434|r 130 IQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGK- 208 (362)
Q Consensus 130 ~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~- 208 (362)
..-+-+.+|+.-.+.+.++. .+..+||-+.+|=. .+.+++.+.++.+..-............
T Consensus 72 ---~~~ipi~vGGGIrs~e~~~~------ll~~GadkViigs~--------a~~~p~~~~~~~~~~G~q~ivvsiD~k~~ 134 (232)
T TIGR03572 72 ---ECFMPLTVGGGIRSLEDAKK------LLSLGADKVSINTA--------ALENPDLIEEAARRFGSQCVVVSIDVKKE 134 (232)
T ss_pred ---HCCCCEEEEECEEEHHHHHH------HHHCCCCEEEECHH--------HHHCCHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf ---72985899713303899999------99769968993454--------52193577899998699458999998416
Q ss_pred ----CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf ----8517865057777488899999876449829998066555323457754463221135645424689999999740
Q gi|254780434|r 209 ----FVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRV 284 (362)
Q Consensus 209 ----~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~ 284 (362)
..-++.+=.-..+.-.+.++++.+.+.|+..+++++ +++++ -+.|+- +..++++++.+
T Consensus 135 ~~~~~~~v~~~g~~~~~~~~~~~~i~~~~~~g~geii~td--I~~DG-----------~~~G~d-----~~l~~~i~~~~ 196 (232)
T TIGR03572 135 LDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNS--IDRDG-----------TMKGYD-----LELIKTVSDAV 196 (232)
T ss_pred CCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEE--ECCCC-----------CCCCCC-----HHHHHHHHHHC
T ss_conf 7787279996677635798799999998735998999988--85768-----------567689-----99999999868
Q ss_pred CCCEEEEEECCCCCHHHHHHHH-HCCCCEEEECHHHHC
Q ss_conf 8974899967889999999999-839997545278770
Q gi|254780434|r 285 GPKIAIIGTGGISSTKDALDKI-MAGANLIQLYSAMIY 321 (362)
Q Consensus 285 ~~~i~IIg~GGI~s~~Da~e~l-~aGAs~VQi~Tali~ 321 (362)
++|+|++|||.+.+|..+.+ ..|+++|-++|.|.|
T Consensus 197 --~~piiasGGi~~~~di~~l~~~~~~~gv~~gs~f~~ 232 (232)
T TIGR03572 197 --SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFHF 232 (232)
T ss_pred --CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf --999999889899999999998589819997211449
No 126
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=98.16 E-value=7.5e-05 Score=52.51 Aligned_cols=82 Identities=26% Similarity=0.312 Sum_probs=62.3
Q ss_pred EEEEC---CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 78650---577774888999998764498299980665553234577544632211356454246899999997408974
Q gi|254780434|r 212 IFLKI---SPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKI 288 (362)
Q Consensus 212 i~vKL---sPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i 288 (362)
..+|+ ++.++++++...++.+.++|+|.|=- .| | ... ...+...++.+++..++++
T Consensus 117 ~~lKVIlEt~~L~~~ei~~a~~~a~~aGadfvKT-ST----------------G-~~~---~gat~e~v~~m~~~~~~~~ 175 (203)
T cd00959 117 APLKVILETGLLTDEEIIKACEIAIEAGADFIKT-ST----------------G-FGP---GGATVEDVKLMKEAVGGRV 175 (203)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE-CC----------------C-CCC---CCCCHHHHHHHHHHHCCCC
T ss_conf 8269997446599999999999999829788971-58----------------8-688---9989999999999838786
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCEEE
Q ss_conf 89996788999999999983999754
Q gi|254780434|r 289 AIIGTGGISSTKDALDKIMAGANLIQ 314 (362)
Q Consensus 289 ~IIg~GGI~s~~Da~e~l~aGAs~VQ 314 (362)
-|-++|||.|.+||.+|+.+||+-+.
T Consensus 176 giKasGGIrt~~~a~~~l~aGa~riG 201 (203)
T cd00959 176 GVKAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred EEECCCCCCCHHHHHHHHHHCCHHEE
T ss_conf 07715897999999999981841221
No 127
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=98.15 E-value=7.6e-05 Score=52.44 Aligned_cols=128 Identities=14% Similarity=0.200 Sum_probs=68.7
Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 20675526983033365322110000234321111224445565531268851786505777748889999987644982
Q gi|254780434|r 159 LFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVE 238 (362)
Q Consensus 159 ~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~d 238 (362)
.+..++|++.|..+-=|. ... ++.++..+ +...+++|++- |... .+-++.+.++|+|
T Consensus 235 Lv~AGvDvlvIDtAHGhS---------~~v---i~~vk~iK-----~~~p~~~viaG---NvaT---~~~a~~Li~aGad 291 (479)
T PRK07807 235 LLEAGVDVLVIDTAHGHQ---------EKM---LEAIRAVR-----ALDPGVPLVAG---NVVT---AEGTRDLVEAGAD 291 (479)
T ss_pred HHHCCCCEEEEECCCCCH---------HHH---HHHHHHHH-----HHCCCCCEEEE---EHHH---HHHHHHHHHCCCC
T ss_conf 997699899975457664---------899---99999998-----40898857874---3202---9999999973999
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf 99980665553234577544632211356454246899999997408974899967889999999999839997545278
Q gi|254780434|r 239 GIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSA 318 (362)
Q Consensus 239 Giv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Ta 318 (362)
+|-+.=-.++ +++-.... |. |.| ...|...++...+.. .+|||+-|||.+.-|+.+-|.+|||+|++++-
T Consensus 292 ~ikvGiG~GS---iCtTr~v~---gv-G~p-q~tAi~~~a~~a~~~--gvpiIADGGIr~sGdi~KAla~GA~~VMlGsl 361 (479)
T PRK07807 292 IVKVGVGPGA---MCTTRMMT---GV-GRP-QFSAVLECAAAAREL--GAHVWADGGVRHPRDVALALAAGASNVMIGSW 361 (479)
T ss_pred EEECCCCCCC---CEECCCCC---CC-CCC-HHHHHHHHHHHHHHC--CCCEEECCCCCCCCHHHHHHHCCCCEEEECCC
T ss_conf 7631555783---24346323---77-886-099999999998756--99789458725346799998728987888830
Q ss_pred H
Q ss_conf 7
Q gi|254780434|r 319 M 319 (362)
Q Consensus 319 l 319 (362)
|
T Consensus 362 l 362 (479)
T PRK07807 362 F 362 (479)
T ss_pred C
T ss_conf 1
No 128
>PRK13114 consensus
Probab=98.13 E-value=0.00013 Score=50.89 Aligned_cols=210 Identities=14% Similarity=0.107 Sum_probs=109.1
Q ss_pred ECCC-CCC--CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH---HC
Q ss_conf 5346-888--67798887403675241020013687899886268842555410000247777788999876410---00
Q gi|254780434|r 60 MAAG-YDK--NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ---PT 133 (362)
Q Consensus 60 lAaG-~dk--~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~---~~ 133 (362)
+-+| +|. +.+.++.+.+.|...+|+|==-..|..- .|-+. -..++++-|-+ ..+.+++.+++.+ .+
T Consensus 19 itaG~P~~~~t~~~i~~l~~~GaDiiEiGiPFSDP~AD--GpvIq-~A~~rAL~~G~-----~l~~~f~~v~~~r~~~~~ 90 (266)
T PRK13114 19 ITGGDPTPGDTAANLDALVAGGADVIELGMPFTDPMAD--GPAIQ-AANLRSLAAGT-----TTADIFRIAAEFRQRHPE 90 (266)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHCCC-----CHHHHHHHHHHHHHCCCC
T ss_conf 70718998999999999997699999979998886776--89999-99999998699-----799999999998741899
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 12100011045424678877655542067552698303336532211000023432111122444556553126885178
Q gi|254780434|r 134 SPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIF 213 (362)
Q Consensus 134 ~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~ 213 (362)
.|+++=-=.|.--....+.|.+-+++. ++|.+-+ .-+|. +...++..... ...+.++
T Consensus 91 ~PivlM~Y~N~i~~~G~~~F~~~~~~a--GvdG~Ii-pDLP~----------eE~~~~~~~~~----------~~gi~~I 147 (266)
T PRK13114 91 VPLVLMGYANPMVRRGPDWFAAECKKA--GVDGVIC-VDIPP----------EEDAELGPALR----------AAGIDPI 147 (266)
T ss_pred CCEEEEEEHHHHHHHHHHHHHHHHHHC--CCCEEEE-CCCCH----------HHHHHHHHHHH----------HCCCCEE
T ss_conf 887998630199986499999999974--9977984-58997----------88899999999----------7499726
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 65057777488899999876449829998066555323457754463221135645424689999999740897489996
Q gi|254780434|r 214 LKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGT 293 (362)
Q Consensus 214 vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~ 293 (362)
-=++|..+++.+..+++.+ +|++-.=+....++.. ..+...-...++++|+.+ ++|+.-.
T Consensus 148 ~liaPtt~~~Ri~~i~~~a-----~gFiY~vs~~GvTG~~-------------~~~~~~~~~~i~~ik~~t--~~Pv~vG 207 (266)
T PRK13114 148 RLATPTTDAARLPAVLEGA-----SGFLYYVSVAGITGMQ-------------QAAQASIEAAVARIKAAT--DLPVAVG 207 (266)
T ss_pred EEECCCCCHHHHHHHHHHC-----CCCEEEEECCCCCCCC-------------CCCHHHHHHHHHHHHHHC--CCCEEEE
T ss_conf 7756999799999999738-----9958998445566776-------------566588999999999707--9986998
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 7889999999999839997545278770
Q gi|254780434|r 294 GGISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 294 GGI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
=||.+++|+.+. ...||.|=|+|+++-
T Consensus 208 FGIs~~e~~~~~-~~~ADGvIVGSaiVk 234 (266)
T PRK13114 208 FGVRTPEQAAAI-ARVADGVVVGSAFVD 234 (266)
T ss_pred CCCCCHHHHHHH-HHCCCEEEECHHHHH
T ss_conf 366989999999-800999998199999
No 129
>PRK13133 consensus
Probab=98.11 E-value=0.0005 Score=46.93 Aligned_cols=213 Identities=17% Similarity=0.090 Sum_probs=102.8
Q ss_pred ECCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH-----
Q ss_conf 5346-88--867798887403675241020013687899886268842555410000247777788999876410-----
Q gi|254780434|r 60 MAAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ----- 131 (362)
Q Consensus 60 lAaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~----- 131 (362)
+-+| +| .+.+.++.+.+.|...+|+|==-..|..- .|-+. ...++++-| |+ ..+.+++-+++.+
T Consensus 21 itaG~P~~~~t~~~i~~l~~~GaDiiElGiPFSDP~AD--GpvIQ-~A~~rAL~~--G~---~~~~~~~~~~~~r~~~~~ 92 (267)
T PRK13133 21 YMPEFPVAGATLPVLEALQESGADIIELGIPYSDPIGD--GPVIQ-NAAHTAIRN--GV---SVRSLLELVRKARNGEGC 92 (267)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHC--CC---CHHHHHHHHHHHHHCCCC
T ss_conf 56869998999999999997599989978998886666--89999-999999986--99---899999999999730243
Q ss_pred --HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf --001210001104542467887765554206755269830333653221100002343211112244455655312688
Q gi|254780434|r 132 --PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKF 209 (362)
Q Consensus 132 --~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~ 209 (362)
.+.|+++--=.|.--.-..+.|.+.+++. ++|.+-+ |--| .+.-.++..... ...
T Consensus 93 ~~~~~PivlMtY~N~i~~yG~e~F~~~~~~a--GvdGlIi----pDLP-------~eE~~~~~~~~~----------~~g 149 (267)
T PRK13133 93 RKITVPILLMGYCNPLIAYGGDCFLADAVKA--GVDGLLI----PDLP-------PEEAIDFLERAK----------NFG 149 (267)
T ss_pred CCCCCCEEEHHHHHHHHHHCHHHHHHHHHHC--CCCEEEC----CCCC-------HHHHHHHHHHHH----------HCC
T ss_conf 4668778715645799984779999999986--9878877----8999-------688899999998----------469
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 51786505777748889999987644982999806655532345775446322113564542468999999974089748
Q gi|254780434|r 210 VPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIA 289 (362)
Q Consensus 210 ~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~ 289 (362)
+..+-=++|..+++.+..+++. .+|++=.=+ +.++.... -++-..+...-...++++|+.+ +.|
T Consensus 150 l~~I~lvaPtt~~eRi~~i~~~-----s~GFiY~vs---~~GvTG~~------~~~~~~~~~~~~~~i~~ik~~t--~~P 213 (267)
T PRK13133 150 LTVVFLISPVTPPERIEFIDSL-----STDFSYCLA---VNATTGTA------KLSDAGTEAAVDEYLKRVRQHT--KKK 213 (267)
T ss_pred CCEEEEECCCCCHHHHHHHHHC-----CCCCEEEEE---EECCCCCC------CCCCCCHHHHHHHHHHHHHHCC--CCC
T ss_conf 8602442899999999999842-----789579998---00134677------5555426789999999999718--998
Q ss_pred EEEEC-CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 99967-889999999999839997545278770
Q gi|254780434|r 290 IIGTG-GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 290 IIg~G-GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
+ .+| ||.+++||.+.... ||-|=|+|+++-
T Consensus 214 v-~vGFGI~~~e~~~~i~~~-ADGvIVGSaiV~ 244 (267)
T PRK13133 214 F-VVGFGIKDRERVEHMWEL-ADGAVVGTALLQ 244 (267)
T ss_pred E-EEECCCCCHHHHHHHHHH-CCEEEECHHHHH
T ss_conf 7-996687999999999822-999998789999
No 130
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=98.10 E-value=5.8e-05 Score=53.26 Aligned_cols=86 Identities=24% Similarity=0.330 Sum_probs=65.9
Q ss_pred EEEEC---CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 78650---577774888999998764498299980665553234577544632211356454246899999997408974
Q gi|254780434|r 212 IFLKI---SPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKI 288 (362)
Q Consensus 212 i~vKL---sPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i 288 (362)
..+|+ ++.++++++...++.+.++|+|.|= +.| |.-.| ..++..+..+++..++++
T Consensus 126 ~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVK-TST----------------Gf~~~----gAT~edv~lM~~~vg~~v 184 (228)
T COG0274 126 VVLKVILETGLLTDEEKRKACEIAIEAGADFVK-TST----------------GFSAG----GATVEDVKLMKETVGGRV 184 (228)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEE-CCC----------------CCCCC----CCCHHHHHHHHHHHCCCC
T ss_conf 448999742556979999999999995899898-477----------------87898----987999999999856571
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf 899967889999999999839997545278
Q gi|254780434|r 289 AIIGTGGISSTKDALDKIMAGANLIQLYSA 318 (362)
Q Consensus 289 ~IIg~GGI~s~~Da~e~l~aGAs~VQi~Ta 318 (362)
-|-++|||.+.+|+..|+.+||+-+...++
T Consensus 185 gvKaSGGIrt~eda~~~i~aga~RiGtSs~ 214 (228)
T COG0274 185 GVKASGGIRTAEDAKAMIEAGATRIGTSSG 214 (228)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHCCCCH
T ss_conf 053268848899999999975787244648
No 131
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=98.10 E-value=5.9e-05 Score=53.19 Aligned_cols=182 Identities=18% Similarity=0.223 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 78877655542067552698303336532211000023432111122444556553126885178650577774888999
Q gi|254780434|r 149 FILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDI 228 (362)
Q Consensus 149 ~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~i 228 (362)
.+.++..-+|..-|+++. ||=|+-- +.-+-|-|..++..++... .+--|-|||. +..-+-.+
T Consensus 950 KV~~~IA~~R~stPGV~L----ISPPPHH---DIYSIEDLaQLI~DLK~~N--------p~ArVsVKLV---s~~GVGTI 1011 (1483)
T PRK11750 950 KVNPLIAKLRYSVPGVTL----ISPPPHH---DIYSIEDLAQLIFDLKQVN--------PKALVSVKLV---SEPGVGTI 1011 (1483)
T ss_pred CCCHHHHHHCCCCCCCCC----CCCCCCC---CCCCHHHHHHHHHHHHHCC--------CCCEEEEEEC---CCCCCCEE
T ss_conf 457999987079999780----4899966---5212778999999986358--------7754567740---23674311
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 99876449829998066555323457754463221135645-42468999999974089748999678899999999998
Q gi|254780434|r 229 AVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPL-FLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIM 307 (362)
Q Consensus 229 a~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i-~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~ 307 (362)
|.-+.++++|-|+++.-.+. +...+..+.. .-|-|. .-++-.--..+..-+..++.+=.-||..||.|+....+
T Consensus 1012 AaGVAKA~AD~I~ISG~dGG---TGAsp~tSik--haGlPwElGlaEthq~L~~n~LR~rV~l~~DGglkTGrDVviaal 1086 (1483)
T PRK11750 1012 ATGVAKAYADLITISGYDGG---TGASPLTSVK--YAGSPWELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAI 1086 (1483)
T ss_pred ECCHHHCCCCEEEECCCCCC---CCCCCHHHHC--CCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 20112047888998168898---7767323420--388865443899999999737546389996698561689999987
Q ss_pred CCCCEEEECHHHH-------------------------------CCC-H----HHHHHHHHHHHHHHHHCCCCCHHHHHC
Q ss_conf 3999754527877-------------------------------069-7----899999999999999838997789616
Q gi|254780434|r 308 AGANLIQLYSAMI-------------------------------YEG-I----SLPKRIIQGLSDFLNKENEVNFENIRG 351 (362)
Q Consensus 308 aGAs~VQi~Tali-------------------------------~~G-p----~~~~~I~~~L~~~l~~~G~~si~e~iG 351 (362)
.||+-...+|+.+ |.| | .++.-+.+|+.++|.+-||.+++|+||
T Consensus 1087 LGAeefgfgT~~Lia~GCiM~R~CHlntCpvGIATQ~~~Lr~~~f~G~pe~vvn~f~~vAeevReilA~LG~rsl~e~iG 1166 (1483)
T PRK11750 1087 LGAESFGFGTAPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFEFIAEETREWMAQLGVRSLEDLIG 1166 (1483)
T ss_pred HCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHC
T ss_conf 26055434427899844088786425889874015898888634289889999999999999999999968415999848
Q ss_pred CC
Q ss_conf 97
Q gi|254780434|r 352 SY 353 (362)
Q Consensus 352 ~~ 353 (362)
+.
T Consensus 1167 r~ 1168 (1483)
T PRK11750 1167 RT 1168 (1483)
T ss_pred CC
T ss_conf 63
No 132
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.10 E-value=6.4e-05 Score=52.97 Aligned_cols=228 Identities=16% Similarity=0.241 Sum_probs=134.1
Q ss_pred EEEECCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHH
Q ss_conf 16888733599748534688867798887403675241020013687899886268842555410000247777788999
Q gi|254780434|r 46 NTKVAGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFS 125 (362)
Q Consensus 46 ~~~~~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~ 125 (362)
..-+.|++|+|.-- +| .-.+..+++.+.|+-=++.=-||..+. |-+.+++
T Consensus 15 GrVVKGv~F~~lrd--~G--DpVelA~~Y~e~GADElvFlDItAs~~--------------------------gr~~~~~ 64 (256)
T COG0107 15 GRVVKGVNFKNLRD--AG--DPVELAKRYNEEGADELVFLDITASSE--------------------------GRETMLD 64 (256)
T ss_pred CEEEECCCCCCHHH--CC--CHHHHHHHHHHCCCCEEEEEECCCCCC--------------------------CCCCHHH
T ss_conf 87984563122131--48--949999999775997699986225656--------------------------6620799
Q ss_pred HHHHHHH--CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHH-----HHHHHH
Q ss_conf 8764100--012100011045424678877655542067552698303336532211000023432111-----122444
Q gi|254780434|r 126 RLSKIQP--TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLL-----IHVMQT 198 (362)
Q Consensus 126 ~l~~~~~--~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l-----~~v~~~ 198 (362)
-+++... .+|+ -+|+.- ..++|..+ .+..+||=+-||=+- +.+|+.+.+.. +.++..
T Consensus 65 vv~~~A~~vfiPl--tVGGGI---~s~eD~~~---ll~aGADKVSINsaA--------v~~p~lI~~~a~~FGsQciVva 128 (256)
T COG0107 65 VVERVAEQVFIPL--TVGGGI---RSVEDARK---LLRAGADKVSINSAA--------VKDPELITEAADRFGSQCIVVA 128 (256)
T ss_pred HHHHHHHHCEEEE--EECCCC---CCHHHHHH---HHHCCCCEEEECHHH--------HCCHHHHHHHHHHHCCCEEEEE
T ss_conf 9999973030324--754775---88899999---997699746528467--------5095999999998388129999
Q ss_pred HHHHHHH--CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 5565531--26885178650577774888999998764498299980665553234577544632211356454246899
Q gi|254780434|r 199 REEEKIK--TGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIA 276 (362)
Q Consensus 199 ~~~~~~~--~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~ 276 (362)
.+..+.. .....-++.+=.-..+.-+..+.++.+++.|+--|.+ | .++++++ +.++ -+.+
T Consensus 129 IDakr~~~g~~~~~~v~~~gGr~~t~~d~~eWa~~~e~~GAGEIlL-t-smD~DGt-----k~Gy-----------Dl~l 190 (256)
T COG0107 129 IDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILL-T-SMDRDGT-----KAGY-----------DLEL 190 (256)
T ss_pred EEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEE-E-EECCCCC-----CCCC-----------CHHH
T ss_conf 8755426899876799966897568857999999999738854878-6-3556565-----3675-----------7999
Q ss_pred HHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCC-CCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999997408974899967889999999999839-99754527877069789999999999999983899
Q gi|254780434|r 277 LAKIRQRVGPKIAIIGTGGISSTKDALDKIMAG-ANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362)
Q Consensus 277 i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aG-As~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362)
++.+++.+ ++|+|++||.-+.+|.+|-+..| ||++--.|-|.|+... ..+++++|.++|+.
T Consensus 191 ~~~v~~~v--~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~~~-----i~evK~yl~~~gi~ 252 (256)
T COG0107 191 TRAVREAV--NIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFGEIT-----IGEVKEYLAEQGIE 252 (256)
T ss_pred HHHHHHHC--CCCEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCC-----HHHHHHHHHHCCCC
T ss_conf 99999648--8788911898968899999981570088764433147454-----99999999985986
No 133
>PRK13140 consensus
Probab=98.07 E-value=0.00081 Score=45.53 Aligned_cols=211 Identities=19% Similarity=0.170 Sum_probs=105.6
Q ss_pred ECCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH--HCC
Q ss_conf 5346-88--867798887403675241020013687899886268842555410000247777788999876410--001
Q gi|254780434|r 60 MAAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ--PTS 134 (362)
Q Consensus 60 lAaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~--~~~ 134 (362)
+-+| +| .+.+.++.+.+.|...+|+|==...|..- .|-+. ....+++-| | -..+.+++.+++.+ .+.
T Consensus 20 ~taG~P~~~~s~~~~~~l~~~GaDiiElGiPfSDP~AD--GpvIq-~A~~rAL~~--G---~~~~~~~~~~~~~r~~~~~ 91 (257)
T PRK13140 20 FTAGYPTLEDTVSIIKDLEKHGVDMIEIGIPFSDPLAD--GPVIQ-KSATQALKN--G---MTLKLLFEQLKDIRKEVQI 91 (257)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHC--C---CCHHHHHHHHHHHHCCCCC
T ss_conf 81828987999999999997599999978988987765--89999-999999986--9---9899999999997436898
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 21000110454246788776555420675526983033365322110000234321111224445565531268851786
Q gi|254780434|r 135 PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFL 214 (362)
Q Consensus 135 pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~v 214 (362)
|+.+--=.|.--.-.+++|.+.+++.+ +|.+-+ |--| -.+....+..... ...+.++-
T Consensus 92 pivlM~Y~N~i~~~G~e~F~~~~~~~G--vdGlIi----pDLP------~ee~~~~~~~~~~----------~~~i~~I~ 149 (257)
T PRK13140 92 PLILMGYLNPIMQYGFEKFCKKCAETG--IDGVII----PDLP------FDDYQEHYKEIFE----------KYGLKNIM 149 (257)
T ss_pred CEEEEECHHHHHHHCHHHHHHHHHHCC--CCEEEE----CCCC------HHHHHHHHHHHHH----------HCCCCEEE
T ss_conf 889990559998517999999999849--986983----5998------5675899999999----------86997799
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 50577774888999998764498299980665553234577544632211356454246899999997408974899967
Q gi|254780434|r 215 KISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG 294 (362)
Q Consensus 215 KLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G 294 (362)
=++|..+++.+..+++.+ +|++=.=+ +.++.... ..+.......++.+++.. .++|+. +|
T Consensus 150 lvaPtt~~~Ri~~i~~~a-----~gFiY~vs---~~GvTG~~----------~~~~~~~~~~i~~ik~~~-~~~Pv~-vG 209 (257)
T PRK13140 150 LITPQTSEERIREIDSHT-----DGFIYMVS---SASTTGAQ----------QDFNNQKRAYFKRIKDMN-LKNPRM-VG 209 (257)
T ss_pred EECCCCCHHHHHHHHHHC-----CCCEEECC---CCCCCCCC----------CCCCHHHHHHHHHHHHHC-CCCCEE-EE
T ss_conf 868999899999999739-----99668703---65666887----------665156899999999827-899869-98
Q ss_pred -CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf -889999999999839997545278770
Q gi|254780434|r 295 -GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 295 -GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
||.+.+|+. .+..+||.|=|+|+++-
T Consensus 210 FGIs~~e~v~-~~~~~aDGvIVGSaivk 236 (257)
T PRK13140 210 FGISNKATFN-AACEYASGAIIGSAFVK 236 (257)
T ss_pred ECCCCHHHHH-HHHHCCCEEEECHHHHH
T ss_conf 0579899999-99831999998799999
No 134
>PRK13124 consensus
Probab=98.06 E-value=0.001 Score=44.92 Aligned_cols=208 Identities=21% Similarity=0.237 Sum_probs=105.3
Q ss_pred ECCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH--CC
Q ss_conf 5346-88--8677988874036752410200136878998862688425554100002477777889998764100--01
Q gi|254780434|r 60 MAAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQP--TS 134 (362)
Q Consensus 60 lAaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~--~~ 134 (362)
+-+| +| .+.+.++.+.+.|...+|+|==...|..- .|-+. ...++++-|- -..+.+.+-+++.+. +.
T Consensus 15 itaG~P~~e~s~~~~~~l~~~GaDiiElGiPfSDP~AD--GpvIq-~A~~~AL~~G-----~~~~~~~~~~~~~r~~~~~ 86 (257)
T PRK13124 15 ITAGDPDPETTIDLVLALEEAGADILELGIPYSDPLAD--GPVIQ-RASKRALNGG-----MNIVKAMELVGKMRKKVTI 86 (257)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHCC-----CCHHHHHHHHHHHHCCCCC
T ss_conf 63708998999999999997699999978988887765--79999-9999999769-----9689999999985244788
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 21000110454246788776555420675526983033365322110000234321111224445565531268851786
Q gi|254780434|r 135 PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFL 214 (362)
Q Consensus 135 pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~v 214 (362)
|+++=-=.|.--.-.+++|.+.+++.+ +|.+-+ |.-| +.+.+ ++..... + ..+.++-
T Consensus 87 pivlM~Y~N~i~~~G~e~F~~~~~~~G--v~GvIi----pDLP----~eE~~---~~~~~~~--------~--~gl~~I~ 143 (257)
T PRK13124 87 PIVYFTYYNPVLQYGLEKFFALARENG--IDGLLI----PDLP----LEESG---ELQEICD--------K--YGIYLIP 143 (257)
T ss_pred CEEEEEHHHHHHHHHHHHHHHHHHHCC--CCEEEC----CCCC----HHHHH---HHHHHHH--------H--CCCCEEE
T ss_conf 889975007898757999999999759--984777----8999----79999---9999998--------6--6873578
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 50577774888999998764498299980665553234577544632211356454246899999997408974899967
Q gi|254780434|r 215 KISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG 294 (362)
Q Consensus 215 KLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G 294 (362)
=++| .+++++..+++. .+|++=.=+ +.++ +| +...+..--...+..+++.+ ++|+ .+|
T Consensus 144 lvaP-Ts~~Ri~~i~~~-----s~gFiY~vs---~~Gv--------TG--~~~~~~~~~~~~i~~ik~~t--~~Pv-~vG 201 (257)
T PRK13124 144 LVAP-TSKERIKKIAEQ-----AEGFVYCVS---SLGV--------TG--VREEIETDLEEFIRTVKQYS--NVPV-AVG 201 (257)
T ss_pred EECC-CCHHHHHHHHHC-----CCCCEEEEE---CCCC--------CC--CCCCCHHHHHHHHHHHHHCC--CCCE-EEE
T ss_conf 8479-967999999854-----898389962---4666--------78--76556088999999998617--9983-898
Q ss_pred -CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf -889999999999839997545278770
Q gi|254780434|r 295 -GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 295 -GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
||.+++|+. .+..+||.|=|+|+++-
T Consensus 202 FGI~~~e~v~-~~~~~ADGvIVGSaivk 228 (257)
T PRK13124 202 FGISTPEQVQ-KMKEIADGVVVGSALVE 228 (257)
T ss_pred ECCCCHHHHH-HHHHHCCEEEECHHHHH
T ss_conf 4469999999-99801999998289999
No 135
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.05 E-value=9e-05 Score=51.96 Aligned_cols=128 Identities=20% Similarity=0.209 Sum_probs=81.4
Q ss_pred HCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 06755269830333653221100002343211112244455655312688517865057777488899999876449829
Q gi|254780434|r 160 FFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEG 239 (362)
Q Consensus 160 ~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dG 239 (362)
+..+||.+-+.-.. |.--+.+.+.+++..++... ..++++-++ + +++ +..+.+.|+|-
T Consensus 89 ~~aGadiIA~DaT~------R~RP~g~~l~~~i~~i~~~~---------~~l~MAD~s---t---~ee-~~~A~~~G~D~ 146 (219)
T cd04729 89 AAAGADIIALDATD------RPRPDGETLAELIKRIHEEY---------NCLLMADIS---T---LEE-ALNAAKLGFDI 146 (219)
T ss_pred HHCCCCEEEEECCC------CCCCCCCCHHHHHHHHHHHH---------CCEEEEECC---C---HHH-HHHHHHCCCCE
T ss_conf 98599999994678------87989978999999999986---------977887548---8---999-99999849989
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf 99806655532345775446322113564542468999999974089748999678899999999998399975452787
Q gi|254780434|r 240 IIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAM 319 (362)
Q Consensus 240 iv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tal 319 (362)
|- ||.+ +..... +.+...-+++++++++.+ ++|+|+=|+|.|+++|.+.+.+||++|-|+||.
T Consensus 147 vg---TTL~--GYT~~t----------~~~~~PD~~lv~~l~~~~--~~pvIaEGri~tPe~a~~a~~~GA~aVVVGsAI 209 (219)
T cd04729 147 IG---TTLS--GYTEET----------AKTEDPDFELLKELRKAL--GIPVIAEGRINSPEQAAKALELGADAVVVGSAI 209 (219)
T ss_pred EE---CCCC--CCCCCC----------CCCCCCCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 97---0214--567787----------889998789999999975--993997069899999999998399899989543
Q ss_pred HCCCHHHHH
Q ss_conf 706978999
Q gi|254780434|r 320 IYEGISLPK 328 (362)
Q Consensus 320 i~~Gp~~~~ 328 (362)
-+ |..+.
T Consensus 210 -Tr-P~~IT 216 (219)
T cd04729 210 -TR-PEHIT 216 (219)
T ss_pred -CC-HHHHH
T ss_conf -88-89986
No 136
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.05 E-value=0.00037 Score=47.84 Aligned_cols=204 Identities=22% Similarity=0.278 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH---HCCCCCCEEE
Q ss_conf 8867798887403675241020013687899886268842555410000247777788999876410---0012100011
Q gi|254780434|r 65 DKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ---PTSPIGINLG 141 (362)
Q Consensus 65 dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~---~~~pi~vsI~ 141 (362)
+...+.++.|.+.|..++|+|==...|-.- .|.+. ....+++-+ +.-.+..++-++..+ .+.|++.=.=
T Consensus 31 e~s~e~i~~L~~~GaD~iELGvPfSDPvAD--GP~Iq-~A~~rAL~~-----g~t~~~~lel~~~~r~~~~~~Pivlm~Y 102 (265)
T COG0159 31 ETSLEIIKTLVEAGADILELGVPFSDPVAD--GPTIQ-AAHLRALAA-----GVTLEDTLELVEEIRAKGVKVPIVLMTY 102 (265)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHC-----CCCHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 999999999986798889966888886766--88999-989999977-----9988999999999986189998899870
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 04542467887765554206755269830333653221100002343211112244455655312688517865057777
Q gi|254780434|r 142 ANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLS 221 (362)
Q Consensus 142 ~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~ 221 (362)
.|..-...+++|.+.+++.+ +|-+-+ +++. .+.-+++..... +... -|| .=.+|+.+
T Consensus 103 ~Npi~~~Gie~F~~~~~~~G--vdGliv-------pDLP----~ee~~~~~~~~~--------~~gi-~~I-~lvaPtt~ 159 (265)
T COG0159 103 YNPIFNYGIEKFLRRAKEAG--VDGLLV-------PDLP----PEESDELLKAAE--------KHGI-DPI-FLVAPTTP 159 (265)
T ss_pred CCHHHHHHHHHHHHHHHHCC--CCEEEE-------CCCC----HHHHHHHHHHHH--------HCCC-CEE-EEECCCCC
T ss_conf 11887735999999999759--987985-------7898----667778999999--------7698-679-88699999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC-CCCCHH
Q ss_conf 4888999998764498299980665553234577544632211356454246899999997408974899967-889999
Q gi|254780434|r 222 EEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG-GISSTK 300 (362)
Q Consensus 222 ~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G-GI~s~~ 300 (362)
++.+..+++.+ +|++-.=+ +.++. |...+ ......+.++++|+.. ++|| .+| ||++++
T Consensus 160 ~~rl~~i~~~a-----~GFiY~vs---~~GvT---------G~~~~-~~~~~~~~v~~vr~~~--~~Pv-~vGFGIs~~e 218 (265)
T COG0159 160 DERLKKIAEAA-----SGFIYYVS---RMGVT---------GARNP-VSADVKELVKRVRKYT--DVPV-LVGFGISSPE 218 (265)
T ss_pred HHHHHHHHHHC-----CCCEEEEE---CCCCC---------CCCCC-CCHHHHHHHHHHHHHC--CCCE-EEECCCCCHH
T ss_conf 89999999747-----98589996---66666---------77765-3046999999999744--8973-8744869999
Q ss_pred HHHHHHHCCCCEEEECHHHHC
Q ss_conf 999999839997545278770
Q gi|254780434|r 301 DALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 301 Da~e~l~aGAs~VQi~Tali~ 321 (362)
+|.+...+ ||-|-++|+++-
T Consensus 219 ~~~~v~~~-ADGVIVGSAiV~ 238 (265)
T COG0159 219 QAAQVAEA-ADGVIVGSAIVK 238 (265)
T ss_pred HHHHHHHH-CCEEEECHHHHH
T ss_conf 99999976-885797399999
No 137
>PRK13136 consensus
Probab=98.02 E-value=0.0013 Score=44.08 Aligned_cols=208 Identities=21% Similarity=0.216 Sum_probs=105.9
Q ss_pred ECCC-CCC--CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH--HCC
Q ss_conf 5346-888--67798887403675241020013687899886268842555410000247777788999876410--001
Q gi|254780434|r 60 MAAG-YDK--NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ--PTS 134 (362)
Q Consensus 60 lAaG-~dk--~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~--~~~ 134 (362)
+-|| +|. +.+.++.+.+.|...+|+|==...|..- .|-+ +....+++-|- -..+.+++-+++.+ .+.
T Consensus 18 itaG~P~~e~s~~~~~~l~~~G~DiiElGiPfSDP~AD--GpvI-q~A~~rAL~~G-----~~~~~~~~~v~~~r~~~~~ 89 (253)
T PRK13136 18 LTAGDGGLERSLESLLALAKGGVNILEVGVPFSDPVAD--GPVI-QEASIRALAQG-----TTLHDVLTLITSFRQHSEI 89 (253)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHH-HHHHHHHHHCC-----CCHHHHHHHHHHHCCCCCC
T ss_conf 64848998999999999996599989978998886665--7999-99999999869-----9799999999982257898
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 21000110454246788776555420675526983033365322110000234321111224445565531268851786
Q gi|254780434|r 135 PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFL 214 (362)
Q Consensus 135 pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~v 214 (362)
|++.=-=.|.--.-. ++|.+.+++. ++|.+-+ |--| + +.-.++..... +. .+..+.
T Consensus 90 pivlM~Y~N~i~~~G-~~f~~~~~~~--GvdGlIi----pDLP----~---eE~~~~~~~~~--------~~--~i~~I~ 145 (253)
T PRK13136 90 PIILFTYFNPLLAAG-DKIYQQMKSA--GVDGCLV----VDLP----V---EEAAPHLTACK--------TA--KIAPIL 145 (253)
T ss_pred CEEEECCCHHHHHHH-HHHHHHHHHC--CCCCEEC----CCCC----H---HHHHHHHHHHH--------HC--CCCCEE
T ss_conf 889986517999979-9999999974--9872006----7899----7---77699999999--------75--887125
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 50577774888999998764498299980665553234577544632211356454246899999997408974899967
Q gi|254780434|r 215 KISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG 294 (362)
Q Consensus 215 KLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G 294 (362)
=++|..+++.+..+++. +.|++=.=+ +.++. |.- ..+...-...++++++.+ ++|+ .+|
T Consensus 146 liaPtt~~eRi~~i~~~-----a~gFiY~vs---~~GvT--------G~~--~~~~~~~~~~i~~ik~~t--~~Pv-~vG 204 (253)
T PRK13136 146 LISPSTTQERLKKINEH-----GEGMLYYVC---RPGTT--------GVR--ATLPENFPAKMNQIKSMT--SLPI-VTG 204 (253)
T ss_pred EECCCCCHHHHHHHHHC-----CCCEEEEEE---CCCCC--------CCC--CCCHHHHHHHHHHHHHHC--CCCE-EEE
T ss_conf 52689988999999960-----898199985---55236--------876--446388999999999726--9986-997
Q ss_pred -CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf -889999999999839997545278770
Q gi|254780434|r 295 -GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 295 -GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
||.+.+||.+.... ||.|=|+|+++-
T Consensus 205 FGIs~~e~v~~~~~~-ADGvIVGSaiV~ 231 (253)
T PRK13136 205 FGIANRKMAAQALQY-ADGFVIGSLFVK 231 (253)
T ss_pred CCCCCHHHHHHHHHH-CCEEEECHHHHH
T ss_conf 154999999999822-999998589999
No 138
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=98.02 E-value=0.00067 Score=46.11 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 77488899999876449829998066555323457754463221135645--4246899999997408974899967889
Q gi|254780434|r 220 LSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPL--FLKSTIALAKIRQRVGPKIAIIGTGGIS 297 (362)
Q Consensus 220 ~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i--~~~al~~i~~i~~~~~~~i~IIg~GGI~ 297 (362)
++++++.++++.+.+.|.+.+|=+++--....... .... .=|+--+-+ +..-+..-..+....+.+..+|+=.||.
T Consensus 140 L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~-~ga~-iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~ 217 (254)
T COG0134 140 LDDEQLEELVDRAHELGMEVLVEVHNEEELERALK-LGAK-IIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGIS 217 (254)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-CCCC-EEEEECCCCCHHEECHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 39999999999999769923899789999999996-7998-899837884021006889999884487775899617989
Q ss_pred CHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 9999999998399975452787706
Q gi|254780434|r 298 STKDALDKIMAGANLIQLYSAMIYE 322 (362)
Q Consensus 298 s~~Da~e~l~aGAs~VQi~Tali~~ 322 (362)
+.+|+..+..+||+++=|+|++|-+
T Consensus 218 ~~~dv~~l~~~ga~a~LVG~slM~~ 242 (254)
T COG0134 218 TPEDVRRLAKAGADAFLVGEALMRA 242 (254)
T ss_pred CHHHHHHHHHCCCCEEEECHHHHCC
T ss_conf 9999999997489989963888569
No 139
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=98.02 E-value=8e-05 Score=52.30 Aligned_cols=89 Identities=20% Similarity=0.226 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 77774888999998764498299980665553234577544632211356454246899999997408974899967889
Q gi|254780434|r 218 PDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGIS 297 (362)
Q Consensus 218 Pd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~ 297 (362)
|+...+.+...|.+++-.|..-+ ..+ .||.+ ....+|+.+++.++ +.++|=.|||.
T Consensus 130 ~~~~~~~~~ayAlaae~lg~~~i-----------------YLE---gSGa~---v~~e~V~~vk~~l~-~~~LivGGGIr 185 (219)
T cd02812 130 TDLKPEDAAAYALAAEYLGMPIV-----------------YLE---YSGAY---GPPEVVRAVKKVLG-DTPLIVGGGIR 185 (219)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEE-----------------EEE---CCCCC---CCHHHHHHHHHHCC-CCEEEEECCCC
T ss_conf 79998999999999998299389-----------------995---68997---99999999998467-97099928979
Q ss_pred CHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHH
Q ss_conf 9999999998399975452787706978999999
Q gi|254780434|r 298 STKDALDKIMAGANLIQLYSAMIYEGISLPKRII 331 (362)
Q Consensus 298 s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~ 331 (362)
|+++|.++..||||.|.++|+ +++.|....++.
T Consensus 186 s~e~a~~~~~AgAD~IVvGn~-iee~~~~~l~~v 218 (219)
T cd02812 186 SGEQAKEMAEAGADTIVVGNI-VEEDPNAALETV 218 (219)
T ss_pred CHHHHHHHHHCCCCEEEECCC-EEECHHHHHHHH
T ss_conf 999999999869999998872-240689997643
No 140
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=97.97 E-value=0.00032 Score=48.28 Aligned_cols=135 Identities=17% Similarity=0.148 Sum_probs=82.6
Q ss_pred HCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 06755269830333653221100002343211112244455655312688517865057777488899999876449829
Q gi|254780434|r 160 FFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEG 239 (362)
Q Consensus 160 ~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dG 239 (362)
+..+||.+-+.=.- |.--+.+.+.+++..++... ..++++-++ + +++ +..+.+.|+|-
T Consensus 85 ~~aGadiIA~DaT~------R~RP~g~~~~~~i~~i~~~~---------~~l~MAD~s---t---~ee-a~~A~~~G~D~ 142 (222)
T PRK01130 85 AAAGADIIALDATL------RPRPDGETLAELVKRIKEKP---------GQLLMADCS---T---LEE-GLAAAKLGFDF 142 (222)
T ss_pred HHCCCCEEEEECCC------CCCCCCCCHHHHHHHHHHHH---------CCEEEEECC---C---HHH-HHHHHHCCCCE
T ss_conf 98699999984678------98989968999999999982---------987898548---8---999-99999849999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf 99806655532345775446322113564542468999999974089748999678899999999998399975452787
Q gi|254780434|r 240 IIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAM 319 (362)
Q Consensus 240 iv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tal 319 (362)
|. ||.+ ++.+ .-.|+.+...-+.+++++++. ++|+|+=|+|.++++|.+.+.+||++|-|+||.
T Consensus 143 V~---TTLs--------GYT~--~t~~~~~~~pD~~lv~~l~~~---~~pvIaEGri~tPe~a~~al~~GA~aVvVGsAI 206 (222)
T PRK01130 143 IG---TTLS--------GYTE--YTEGETPEEPDFALLKELLKA---GCPVIAEGRINTPEQAKKALELGAHAVVVGSAI 206 (222)
T ss_pred EE---CCCC--------CCCC--CCCCCCCCCCCHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 97---2334--------5676--767787899869999999958---998997479899999999998499899989754
Q ss_pred HCCCHHHH-HHHHHHH
Q ss_conf 70697899-9999999
Q gi|254780434|r 320 IYEGISLP-KRIIQGL 334 (362)
Q Consensus 320 i~~Gp~~~-~~I~~~L 334 (362)
-+ |..+ ++-.+.+
T Consensus 207 -Tr-P~~IT~~F~~ai 220 (222)
T PRK01130 207 -TR-PEEITKWFVDAL 220 (222)
T ss_pred -CC-HHHHHHHHHHHH
T ss_conf -79-899999999997
No 141
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein; InterPro: IPR008205 This family contains prokaryotic proteins that are related to pcrB. Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40 0dentity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB . The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown..
Probab=97.96 E-value=7.7e-05 Score=52.41 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=64.3
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHH
Q ss_conf 775446322113564542468999999974--089748999678899999999998399975452787706978999999
Q gi|254780434|r 254 CSDNHEQDGGLSGSPLFLKSTIALAKIRQR--VGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRII 331 (362)
Q Consensus 254 ~~~~~~~~GGlSG~~i~~~al~~i~~i~~~--~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~ 331 (362)
.+....|+||=-|.|+.|-....|+++-.. ++++..++=.|||.|.|+|.++..||||.|=++| ++|+.+.++..+.
T Consensus 160 ~~~~YLEagsgap~pvpPE~va~vk~v~~~aGyGGe~~L~vGGGIRs~E~A~~~a~AgAD~~VtGn-vie~~~nv~~k~~ 238 (242)
T TIGR01768 160 MPIIYLEAGSGAPEPVPPELVAEVKKVLDKAGYGGEVKLIVGGGIRSVEKARKLAEAGADVVVTGN-VIEEDDNVVDKAL 238 (242)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEE-EEECCHHHHHHHH
T ss_conf 968999637875479745899999987410478863257840764788999999534598999846-8751637899999
Q ss_pred H
Q ss_conf 9
Q gi|254780434|r 332 Q 332 (362)
Q Consensus 332 ~ 332 (362)
+
T Consensus 239 ~ 239 (242)
T TIGR01768 239 E 239 (242)
T ss_pred H
T ss_conf 9
No 142
>pfam04481 DUF561 Protein of unknown function (DUF561). Protein of unknown function found in a cyanobacterium, and the chloroplasts of algae.
Probab=97.93 E-value=0.0013 Score=44.13 Aligned_cols=176 Identities=18% Similarity=0.092 Sum_probs=100.3
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEE-ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 00121000110454246788776555420675526983-03336532211000023432111122444556553126885
Q gi|254780434|r 132 PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTI-NISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFV 210 (362)
Q Consensus 132 ~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEi-NiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~ 210 (362)
.+.|+-||-- +.+.|. ..+..+||.+|| |+-|=-.. +|.|...+- +.-.++.| ..-.++
T Consensus 60 ~~lPiCVSaV-------ep~~f~---~aV~AGA~lvEIGNfDsFY~q-Gr~f~a~eV----L~Lt~~Tr-----~LLP~~ 119 (243)
T pfam04481 60 SNIPICVSAV-------EPELLY---EAVLAGADLVEIGNFDSFYKQ-GRVLSVCEI----IALVKETR-----KLLPHT 119 (243)
T ss_pred CCCCEEEECC-------CHHHHH---HHHHHCCCEEEECCHHHHHHC-CCEECHHHH----HHHHHHHH-----HHCCCC
T ss_conf 8998586047-------978889---999827878986453647654-766449999----99999999-----768998
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHCCCCEE
Q ss_conf 178650577774888999998764498299980665553234577544632211356454-2468999999974089748
Q gi|254780434|r 211 PIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLF-LKSTIALAKIRQRVGPKIA 289 (362)
Q Consensus 211 Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~-~~al~~i~~i~~~~~~~i~ 289 (362)
|+-|-+|.-+..++..+++..+++.|+|=|- |-+... . .+...|..|---+ -.++...+.+.+.+ ++|
T Consensus 120 ~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQ---TEGgts---s---~p~~~g~~glIekaapTLAaay~IS~~v--~vP 188 (243)
T pfam04481 120 PLCVTIPHILKLKEQINLAKQLESLGIDLIQ---TEGKIT---S---ISKNHCVNDLIEKSASTLASTYEISKHV--QLP 188 (243)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEE---CCCCCC---C---CCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCC
T ss_conf 4477457635678999999999981887787---289877---7---8888425777988758899999998617--876
Q ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-CCHHHHHHHHHHHHHHHH
Q ss_conf 99967889999999999839997545278770-697899999999999999
Q gi|254780434|r 290 IIGTGGISSTKDALDKIMAGANLIQLYSAMIY-EGISLPKRIIQGLSDFLN 339 (362)
Q Consensus 290 IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~-~Gp~~~~~I~~~L~~~l~ 339 (362)
||..-|+++ -.+---+.+||+-|.++|+.-. +...-.--..++|.+-|.
T Consensus 189 VlcASGlS~-vT~PmAiaaGAsGVGVGSavn~Lnd~~aMva~vr~l~~al~ 238 (243)
T pfam04481 189 VICASGLSD-VTVPLAFSYGASGIGIGSAVSKLNDIEKMVNYISEIKKAIS 238 (243)
T ss_pred EEECCCCCH-HHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 675467642-14788997487710065776500249999999999999973
No 143
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein; InterPro: IPR005992 This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria..
Probab=97.93 E-value=0.00062 Score=46.29 Aligned_cols=51 Identities=25% Similarity=0.428 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHH----HCCCC-EEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 246899999997----40897-4899967889999999999839997545278770
Q gi|254780434|r 271 LKSTIALAKIRQ----RVGPK-IAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 271 ~~al~~i~~i~~----~~~~~-i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
+.|..=++-.|+ +++++ ++||+=|||.+.=|..+-|.+|||+|.++|-+-.
T Consensus 239 ATAiAD~AAARrDYLdEtGGRYVHviADG~i~~sGd~~KAIACGADAV~lGSPLAr 294 (376)
T TIGR01304 239 ATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLAKAIACGADAVVLGSPLAR 294 (376)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHEECCCCHHHHCCCHHH
T ss_conf 67899999730113330689337788628705546300100137760200780256
No 144
>pfam01791 DeoC DeoC/LacD family aldolase. This family includes diverse aldolase enzymes. This family includes the enzyme deoxyribose-phosphate aldolase EC:4.1.2.4, which is involved in nucleotide metabolism. The family also includes a group of related bacterial proteins of unknown function. The family also includes tagatose 1,6-diphosphate aldolase (EC:4.1.2.40) is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=97.92 E-value=0.00038 Score=47.77 Aligned_cols=91 Identities=18% Similarity=0.186 Sum_probs=59.2
Q ss_pred CCCCEEEEECCC-------CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 688517865057-------7774888999998764498299980665553234577544632211356454246899999
Q gi|254780434|r 207 GKFVPIFLKISP-------DLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAK 279 (362)
Q Consensus 207 ~~~~Pi~vKLsP-------d~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~ 279 (362)
...+|+++-.-| ..+.+.+...++.+.+.|+|-|=. .|. ++ -. ..+..-++.
T Consensus 121 ~~~lkvIiE~~~~~~~~~~~~~~~~i~~a~ria~e~GaD~vKt-stg--------------~~-~~-----gat~~~v~~ 179 (231)
T pfam01791 121 GEGLKVILEAYLRGEEIKDKVDPHLVAKATRVGAEAGADFVKT-STG--------------FG-ER-----GATEEDVQI 179 (231)
T ss_pred HCCCEEEEEEEECCCHHCCCCCHHHHHHHHHHHHHHCCCEEEE-CCC--------------CC-CC-----CCCHHHHHH
T ss_conf 0487089998515721003268999999999999959998981-578--------------78-88-----778889999
Q ss_pred HHHHCCCC-EEEEEECCC------CCHHHHHHHHHCCCCEEEECHH
Q ss_conf 99740897-489996788------9999999999839997545278
Q gi|254780434|r 280 IRQRVGPK-IAIIGTGGI------SSTKDALDKIMAGANLIQLYSA 318 (362)
Q Consensus 280 i~~~~~~~-i~IIg~GGI------~s~~Da~e~l~aGAs~VQi~Ta 318 (362)
+++..+.. ++|..+||| .+.+++.+++.|||+...+.++
T Consensus 180 ~~~~~~~~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGA~~~G~s~G 225 (231)
T pfam01791 180 FKEVVGGAPPGVKASGGIKEKDFLRTVEDAIALIEAGADRIGVSAG 225 (231)
T ss_pred HHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9998568787489933868643789999999999869981209998
No 145
>PRK13131 consensus
Probab=97.90 E-value=0.00052 Score=46.84 Aligned_cols=226 Identities=18% Similarity=0.227 Sum_probs=115.7
Q ss_pred ECCC-CCC--CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHH---HHHHHHHHHHC
Q ss_conf 5346-888--67798887403675241020013687899886268842555410000247777788---99987641000
Q gi|254780434|r 60 MAAG-YDK--NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHT---VFSRLSKIQPT 133 (362)
Q Consensus 60 lAaG-~dk--~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~---~~~~l~~~~~~ 133 (362)
+-+| +|. +.+.++.+.+.|...+|+|==-..|-.- .|-+. ....+++ +|--... +++++++...+
T Consensus 17 itaG~P~~e~s~~~~~~l~~~GadiiEiGiPFSDP~AD--GpvIQ-~a~~rAL------~~g~~~~~~~~~~~~r~~~~~ 87 (257)
T PRK13131 17 VTLGDPNYELSFEIIKTLIISGVSALELGFAFSDPVAD--GITIQ-ASHLRAL------KHASMAKNFQLLKKIRDYNHH 87 (257)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHH------HCCCHHHHHHHHHHHHHCCCC
T ss_conf 61868998899999999997799999978998885545--59999-9999999------789889999999998704999
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEE-ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 121000110454246788776555420675526983-0333653221100002343211112244455655312688517
Q gi|254780434|r 134 SPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTI-NISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPI 212 (362)
Q Consensus 134 ~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEi-NiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi 212 (362)
.|+..=--.|.--.-.+++|.+.+++.+ +|.+-+ .+ |. +.-.++..+.. + ..+.+
T Consensus 88 ~pivlM~Y~N~i~~yG~e~F~~~~~~~G--vdGvIipDL--P~----------eE~~~~~~~~~--------~--~~l~~ 143 (257)
T PRK13131 88 IPIGLLAYANLIFSYGVDGFYAQAKECG--VDSVLIADM--PL----------IEKELVIKSAQ--------K--HQIKQ 143 (257)
T ss_pred CCEEEECCHHHHHHHCHHHHHHHHHHCC--CCCEECCCC--CH----------HHHHHHHHHHH--------H--CCCCE
T ss_conf 8889992768999857999999998659--985655899--96----------78899999999--------7--79847
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 86505777748889999987644982999806655532345775446322113564542468999999974089748999
Q gi|254780434|r 213 FLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIG 292 (362)
Q Consensus 213 ~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg 292 (362)
+-=++|..+++++..+++. ++|++=.=+ +.++.... ..+.......++.+|+.. ++|+ .
T Consensus 144 I~lvaPtt~~~Ri~~i~~~-----s~GFiY~vs---~~GvTG~~----------~~~~~~~~~~i~~ik~~t--~~Pv-~ 202 (257)
T PRK13131 144 IFIASPNASVKDLEQVATH-----SQGYIYTLA---RSGVTGAS----------HTLENDASAIIKTLKTFS--PTPA-L 202 (257)
T ss_pred EEEECCCCCHHHHHHHHHC-----CCCEEEEEE---CCCCCCCC----------CCCCHHHHHHHHHHHHCC--CCCE-E
T ss_conf 9972899988999999835-----897499984---57677986----------434076999999999668--9987-9
Q ss_pred EC-CCCCHHHHHHHHHCCCCEEEECHHHHC---CCHHHHHHHHHHHHHHHH
Q ss_conf 67-889999999999839997545278770---697899999999999999
Q gi|254780434|r 293 TG-GISSTKDALDKIMAGANLIQLYSAMIY---EGISLPKRIIQGLSDFLN 339 (362)
Q Consensus 293 ~G-GI~s~~Da~e~l~aGAs~VQi~Tali~---~Gp~~~~~I~~~L~~~l~ 339 (362)
+| ||++.+|+.+....|||.|=++|+++- ++..--..+.+.++++.+
T Consensus 203 vGFGIs~~e~v~~~~~~gaDGvIVGSaiV~~I~~~~~~~~~~~~~i~~fv~ 253 (257)
T PRK13131 203 LGFGISKKEHITNAKGMGADGVICGSALVKIIEENLNNENAMLEKIKGFIG 253 (257)
T ss_pred EECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 980579889999998559999998789999998727888999999999999
No 146
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.89 E-value=0.0013 Score=44.05 Aligned_cols=84 Identities=27% Similarity=0.389 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
Q ss_conf 88899999876449829998066555323457754463221135645424689999999740897489996788999999
Q gi|254780434|r 223 EELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDA 302 (362)
Q Consensus 223 ~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da 302 (362)
-.+.++++..++.|+.+|+.++ +++++ -++|+- ...+.++.+.+ ++|+|++|||.|-+|.
T Consensus 147 ~~~~~l~~~~~~~g~~~ii~Td--I~~DG-----------tl~G~n-----~~l~~~l~~~~--~ipviaSGGv~s~~Di 206 (241)
T COG0106 147 VELEELAKRLEEVGLAHILYTD--ISRDG-----------TLSGPN-----VDLVKELAEAV--DIPVIASGGVSSLDDI 206 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEE--CCCCC-----------CCCCCC-----HHHHHHHHHHH--CCCEEEECCCCCHHHH
T ss_conf 7899999999857877699985--14466-----------457778-----79999999982--7678986686879999
Q ss_pred HHHHHC-CCCEEEECHHHHCCCHHHH
Q ss_conf 999983-9997545278770697899
Q gi|254780434|r 303 LDKIMA-GANLIQLYSAMIYEGISLP 327 (362)
Q Consensus 303 ~e~l~a-GAs~VQi~Tali~~Gp~~~ 327 (362)
...-.. |..-|-+++|+ |+|-.-+
T Consensus 207 ~~l~~~~G~~GvIvG~AL-y~g~~~l 231 (241)
T COG0106 207 KALKELSGVEGVIVGRAL-YEGKFTL 231 (241)
T ss_pred HHHHHCCCCCEEEEEHHH-HCCCCCH
T ss_conf 999855797289986689-6489789
No 147
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.88 E-value=0.00074 Score=45.78 Aligned_cols=193 Identities=16% Similarity=0.196 Sum_probs=103.9
Q ss_pred HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCH
Q ss_conf 77988874036752410200136878998862688425554100002477777889998764100012100011045424
Q gi|254780434|r 68 AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSK 147 (362)
Q Consensus 68 ~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~ 147 (362)
.+..+.|.+.|+-.+.+=-+ ..-.|++ .| ..+++++.+. ...| +.+|+.--+.
T Consensus 32 ~~~a~~~~~~Ga~~lhvvDL--daa~g~~-------------------~N---~~~I~~i~~~-~~~p--iqvGGGIrs~ 84 (231)
T PRK13586 32 LKIAEELYNEGYDSIHVVDL--DAAEGKG-------------------DN---EEYIKRICKI-GFSW--IQVGGGIRDV 84 (231)
T ss_pred HHHHHHHHHCCCCEEEEEEC--CCCCCCC-------------------CH---HHHHHHHHHH-CCCC--EEEECCCCCH
T ss_conf 99999999879998999967--1568998-------------------43---9999999974-5985--7985671769
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 67887765554206755269830333653221100002343211112244455655312688517865057777488899
Q gi|254780434|r 148 DFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDD 227 (362)
Q Consensus 148 ~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ 227 (362)
+.++. .+..+||-+.+|=. .+.+++.+.+++...-..+............+..+ .+..+...+.+
T Consensus 85 e~~~~------~l~~Ga~kViigS~--------a~~np~~~~~~~~~~G~~~iv~siD~~~~~~v~~~-Gw~~~~~~~~~ 149 (231)
T PRK13586 85 EKAER------LLSYDCSAIVMSTL--------PFTNPDTFRRIVAGIGENRVLVSVDYDDRKYVLIK-GWKEKSMKVED 149 (231)
T ss_pred HHHHH------HHHCCCCEEEECHH--------HHHCHHHHHHHHHHHCCCCEEEEEEECCCCEEEEE-CCCCCCCCHHH
T ss_conf 99999------99779988997688--------87695999999998499668999997589689984-87268866999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 99987644982999806655532345775446322113564542468999999974089748999678899999999998
Q gi|254780434|r 228 IAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIM 307 (362)
Q Consensus 228 ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~ 307 (362)
+++.+.+.|+..+++++ +++++ -++|+- +...+.+.... ..+++ +|||.|-+|..+...
T Consensus 150 ~i~~~~~~g~~~ii~Td--I~~DG-----------t~~G~d-----~~l~~~i~~~~--~~~i~-aGGi~s~~Di~~L~~ 208 (231)
T PRK13586 150 AISHVNSLESLGVIFTY--VCNEG-----------TKNGID-----NNVKRYVKLVK--GEKEY-AGGIGSIQDLQKLKK 208 (231)
T ss_pred HHHHHHHCCCCEEEEEE--ECCHH-----------CCCCCC-----HHHHHHHHHCC--CCCEE-ECCCCCHHHHHHHHH
T ss_conf 99999975998899976--45112-----------036899-----89999998718--99599-868899999999986
Q ss_pred CCCCEEEECHHHHCCCH
Q ss_conf 39997545278770697
Q gi|254780434|r 308 AGANLIQLYSAMIYEGI 324 (362)
Q Consensus 308 aGAs~VQi~Tali~~Gp 324 (362)
+|++.|-+++|+ |+|-
T Consensus 209 ~G~~gaivG~Al-y~G~ 224 (231)
T PRK13586 209 MGFDYAIVGMSF-YAGV 224 (231)
T ss_pred CCCCEEEEEHHH-HCCC
T ss_conf 799889999788-6882
No 148
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.87 E-value=0.0016 Score=43.49 Aligned_cols=85 Identities=25% Similarity=0.319 Sum_probs=60.1
Q ss_pred CEEEEEC-CCCC-CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 5178650-5777-7488899999876449829998066555323457754463221135645424689999999740897
Q gi|254780434|r 210 VPIFLKI-SPDL-SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPK 287 (362)
Q Consensus 210 ~Pi~vKL-sPd~-~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~ 287 (362)
+|+.+=+ +..+ +.+++...++.+.+.|+|.|=-+ | . ++ . ....+..++.+++..+++
T Consensus 114 ~~~kvi~e~~~l~~~~~i~~a~~~~~~~GadfvKts-t-----------G---~~--~----~~at~~~v~~m~~~~~~~ 172 (201)
T cd00945 114 LPLKVILETRGLKTADEIAKAARIAAEAGADFIKTS-T-----------G---FG--G----GGATVEDVKLMKEAVGGR 172 (201)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEC-C-----------C---CC--C----CCCCHHHHHHHHHHHCCC
T ss_conf 837999616778999999999999998099879855-8-----------8---78--8----989999999999982878
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 4899967889999999999839997545
Q gi|254780434|r 288 IAIIGTGGISSTKDALDKIMAGANLIQL 315 (362)
Q Consensus 288 i~IIg~GGI~s~~Da~e~l~aGAs~VQi 315 (362)
++|.++|||.+.+++.+++.+||+.+..
T Consensus 173 ~~vk~sGGi~~~~~a~~~l~aGa~~igt 200 (201)
T cd00945 173 VGVKAAGGIKTLEDALAAIEAGADGIGT 200 (201)
T ss_pred CEEECCCCCCCHHHHHHHHHHCCCEEEC
T ss_conf 6386358979999999999828653537
No 149
>PRK13112 consensus
Probab=97.83 E-value=0.0003 Score=48.45 Aligned_cols=208 Identities=17% Similarity=0.183 Sum_probs=109.4
Q ss_pred CCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHH---HHCC
Q ss_conf 346-88--86779888740367524102001368789988626884255541000024777778899987641---0001
Q gi|254780434|r 61 AAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKI---QPTS 134 (362)
Q Consensus 61 AaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~---~~~~ 134 (362)
-+| +| .+.+.++.+.+.|...+|+|==-..|..- .|-+. ...++++-|-+ .++.+++-+++. ....
T Consensus 25 taG~P~~~~s~~~l~~l~~~GaDiiElGiPFSDPvAD--GPvIQ-~A~~rAL~~G~-----~~~~~~~~~~~ir~~~~~~ 96 (279)
T PRK13112 25 MGGDPDLETSLKIMKALPKAGADIIELGMPFSDPMAD--GPAIQ-AAGLRALKAGQ-----TLAKTLYLAREFRKDDDTT 96 (279)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC--CHHHH-HHHHHHHHCCC-----CHHHHHHHHHHHHCCCCCC
T ss_conf 0738997899999999987799989978998986665--79999-99999997699-----6889999999851348998
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 21000110454246788776555420675526983033365322110000234321111224445565531268851786
Q gi|254780434|r 135 PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFL 214 (362)
Q Consensus 135 pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~v 214 (362)
|+++=-=.|.--...++.|.+.+++.+ +|.+-+ .-+|. +.-.++..+.. ...+.++-
T Consensus 97 PivlM~Y~N~i~~~G~e~F~~~~~~aG--vdGvIi-pDLP~----------eE~~~~~~~~~----------~~~i~~I~ 153 (279)
T PRK13112 97 PIVLMGYYNPIYIYGVERFLTDAKAAG--VDGLIV-VDLPP----------EMDAELCIPAM----------KAGINFIR 153 (279)
T ss_pred CEEEEEECHHHHHHCHHHHHHHHHHCC--CCEEEE-CCCCH----------HHHHHHHHHHH----------HCCCCEEE
T ss_conf 879985124998847999999999739--987984-69997----------88899999998----------57834699
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 50577774888999998764498299980665553234577544632211356454246899999997408974899967
Q gi|254780434|r 215 KISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG 294 (362)
Q Consensus 215 KLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G 294 (362)
=++|..+++.+..+++.+ .|++-.=+ +.++.... ..+.......|..+++.+ ++|| .+|
T Consensus 154 lvaPtt~~eRi~~i~~~s-----~GFiY~Vs---~~GvTG~~----------~~~~~~~~~~i~~ik~~t--~~Pv-~vG 212 (279)
T PRK13112 154 LATPTTDDKRLPKVLANT-----SGFVYYVS---MTGITGSA----------LADTSAVGEAVARIKRHT--DLPV-CVG 212 (279)
T ss_pred EECCCCCHHHHHHHHHCC-----CCCEEEEE---CCCCCCCC----------CCCHHHHHHHHHHHHHHC--CCCC-EEE
T ss_conf 825899899999998527-----88089983---56666766----------456488999999999717--8987-678
Q ss_pred -CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf -889999999999839997545278770
Q gi|254780434|r 295 -GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 295 -GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
||.+++||. .+..+||-|=|+|+++-
T Consensus 213 FGIs~~e~~~-~~~~~aDGvIVGSAiVk 239 (279)
T PRK13112 213 FGVKTPEQAR-AIAAHADGVVVGTAIVN 239 (279)
T ss_pred ECCCCHHHHH-HHHCCCCEEEECHHHHH
T ss_conf 3569999999-99725999998779999
No 150
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=97.81 E-value=0.0038 Score=41.02 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=31.9
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf 89748999678899999999998399975452787
Q gi|254780434|r 285 GPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAM 319 (362)
Q Consensus 285 ~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tal 319 (362)
+..+|||+-|||...-|+.+.|.+|||+|++++-|
T Consensus 350 g~~vpiiADGGi~~sGDi~KAlaaGA~~VMlGsll 384 (497)
T PRK07107 350 GVYIPICSDGGIVHDYHMTLALAMGADFIMLGRYF 384 (497)
T ss_pred CCCCEEECCCCCCCCCHHHHHHHCCCCEEEECCCC
T ss_conf 67632871787565545999985389889988110
No 151
>PRK02747 consensus
Probab=97.77 E-value=0.00042 Score=47.48 Aligned_cols=88 Identities=14% Similarity=0.136 Sum_probs=59.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 99999876449829998066555323457754463221135645424689999999740897489996788999999999
Q gi|254780434|r 226 DDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDK 305 (362)
Q Consensus 226 ~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~ 305 (362)
.+.++.-.+.|+|-+++.+-..+ ..| ++.-+..|+++++.+ .+||--.|||.|-+||.++
T Consensus 33 ~~~ak~~~~~Gadelh~vDl~~a---------------~~~---~~~~~~lI~~i~~~~--~ipi~vGGGIrs~e~~~~l 92 (257)
T PRK02747 33 VEAARAYDAAGADELCFLDITAS---------------HEN---RGTMLDVVARTAEQC--FMPLTVGGGVRTVDDIRKL 92 (257)
T ss_pred HHHHHHHHHCCCCEEEEEECCCC---------------CCC---CHHHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHH
T ss_conf 99999999869998999947677---------------567---552899999999866--9988984882073887899
Q ss_pred HHCCCCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 98399975452787706978999999999
Q gi|254780434|r 306 IMAGANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 306 l~aGAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
+.+|||-|-++|+.+ +.|.+++++.+..
T Consensus 93 l~~GadkViigs~a~-~np~l~~~~~~~f 120 (257)
T PRK02747 93 LLAGADKVSINSAAV-ARPEFVAEAADKF 120 (257)
T ss_pred HHCCCCEEEECHHHH-HCCHHHHHHHHHC
T ss_conf 876996898344465-4834777788755
No 152
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit; InterPro: IPR004651 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis. This family describes the histidine biosynthesis protein, HisF. ; GO: 0000107 imidazoleglycerol-phosphate synthase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm, 0009382 imidazoleglycerol-phosphate synthase complex.
Probab=97.77 E-value=0.00013 Score=50.94 Aligned_cols=256 Identities=16% Similarity=0.189 Sum_probs=141.8
Q ss_pred HHCCCCCCCCCCEEEECCEECCCC-EEECCCC---CCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 110467889631168887335997-4853468---886779888740367524102001368789988626884255541
Q gi|254780434|r 34 LSFFPVHSDPRLNTKVAGISLSNP-LGMAAGY---DKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAI 109 (362)
Q Consensus 34 ~~~~~~~~~~~L~~~~~Gl~~~nP-iglAaG~---dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~i 109 (362)
+...-...+++ ..=+.|++|.|. ---.-|+ ..=-|.-+.+.+-|+-=+|.==||.-.- .| + .+
T Consensus 8 PCLDV~~~~~~-GrVVKGv~F~~reksdGkGlrdaGDPVeLA~~Y~~eGADELVFLDITAS~e----cP-l-----~R-- 74 (312)
T TIGR00735 8 PCLDVRDNDGD-GRVVKGVQFLNREKSDGKGLRDAGDPVELAQRYDEEGADELVFLDITASSE----CP-L-----GR-- 74 (312)
T ss_pred CCCCCCCCCCC-CEEECCEEECCCCCCCCCCHHHCCCHHHHHHHHHHCCCCEEEECCCCCCCC----CC-C-----CC--
T ss_conf 44566577899-447724231003343554201217823789998762895898514113666----78-8-----88--
Q ss_pred EEECCCCCCCHHHHHHHHHHHHH--CCCCCCEEECCCCCHHHHHHHH-------HHH-HHHCCCCCEEEEE---CCCCCC
Q ss_conf 00002477777889998764100--0121000110454246788776-------555-4206755269830---333653
Q gi|254780434|r 110 INKLGFNNAGYHTVFSRLSKIQP--TSPIGINLGANKDSKDFILDYV-------SGI-RLFFTIASYFTIN---ISSPNT 176 (362)
Q Consensus 110 iN~~Gl~N~G~~~~~~~l~~~~~--~~pi~vsI~~~~~s~~~~~dy~-------~~~-~~~~~~aD~iEiN---iSCPNt 176 (362)
+.+++-+++.-. .+|+= +|+-- ..++|+. +.. +.|..+||=+-|| +-+|+-
T Consensus 75 -----------~~m~~Vv~r~Ae~VfiPlT--VGGGI---~~~eD~~GtkiPalevas~~L~aGADKvSiNTaAv~~P~l 138 (312)
T TIGR00735 75 -----------ETMIDVVERTAEKVFIPLT--VGGGI---KSIEDVKGTKIPALEVASKLLRAGADKVSINTAAVKNPEL 138 (312)
T ss_pred -----------CCHHHHHHHHHHHCCCCEE--ECCCC---CCHHHCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHCCHH
T ss_conf -----------0116788887521452222--16888---8432045644427899999985489846328467508447
Q ss_pred C-CCCCC---CCH-------HHHHHHHHHHHHHHHHHHHHC-CCCCEEEEEC-------------CCCC----CHHHHHH
Q ss_conf 2-21100---002-------343211112244455655312-6885178650-------------5777----7488899
Q gi|254780434|r 177 P-GLRSL---QKK-------KNLERLLIHVMQTREEEKIKT-GKFVPIFLKI-------------SPDL----SEEELDD 227 (362)
Q Consensus 177 ~-g~~~~---~~~-------~~l~~~l~~v~~~~~~~~~~~-~~~~Pi~vKL-------------sPd~----~~~~i~~ 227 (362)
- .+-.. .+| =+-++++-++-.++....... .+.. ..+++ .=.. +.-+..+
T Consensus 139 i~e~a~~GdGtsPietiskaFGsQciVvaIDakr~~~~~~~~~k~~-f~~e~~dGy~~y~V~~~GGR~~rtr~tg~da~~ 217 (312)
T TIGR00735 139 ISEAADRGDGTSPIETISKAFGSQCIVVAIDAKRVYVNSNPDEKNE-FIVEVEDGYCWYEVYIYGGRESRTRVTGLDAVE 217 (312)
T ss_pred HHHHHHCCCCCCHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCC-EEEECCCCCEEEEEEEECCCCCCCCCCHHHHHH
T ss_conf 8998732787551566653138517997552640544556333465-078733896026899830865554102067999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 99987644982999806655532345775446322113564542468999999974089748999678899999999998
Q gi|254780434|r 228 IAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIM 307 (362)
Q Consensus 228 ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~ 307 (362)
.++.+++-||==|.+ |. +++++. +.++ + +.+++.+++.+ ++|+|++||.-+.++.+|-+.
T Consensus 218 Wa~~v~~lGAGEILL-ts-mD~DG~-----k~GY---------D--l~L~~~v~e~v--~iPVIASGGAG~~eHf~EAF~ 277 (312)
T TIGR00735 218 WAKEVEKLGAGEILL-TS-MDRDGT-----KSGY---------D--LELTKAVSEAV--KIPVIASGGAGKPEHFYEAFT 277 (312)
T ss_pred HHHHHHHCCCCEEEE-EC-CCCCCC-----CCCC---------C--HHHHHHHHHHC--CCCEEEECCCCCCCCHHHHHH
T ss_conf 999987458856653-03-374678-----7877---------6--89999898416--656575078798530032221
Q ss_pred CC-CCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 39-99754527877069789999999999999983899
Q gi|254780434|r 308 AG-ANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362)
Q Consensus 308 aG-As~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362)
.| ||++=..|-|.|+=.. ..||++||.++|+.
T Consensus 278 ~gkADAaLaAS~FH~~e~~-----I~evK~YL~~~Gi~ 310 (312)
T TIGR00735 278 KGKADAALAASIFHYREIT-----IGEVKEYLAERGIP 310 (312)
T ss_pred CCCHHHHHHHHHHHCCCCC-----HHHHHHHHHHCCCC
T ss_conf 0003453443555104554-----89999999964787
No 153
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.74 E-value=0.00022 Score=49.34 Aligned_cols=62 Identities=19% Similarity=0.375 Sum_probs=44.9
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999740897489996788999999999983999754527877069789999999999999
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFL 338 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l 338 (362)
..++.++.-++++++++.+|||.. +++.+|+.+||.+|.++|.+.-.| ....+|.+--++++
T Consensus 139 ~~ikal~~p~P~~~~~~ptGGV~~-~N~~~~l~aGa~avG~Gs~L~~~~-~~~~~i~~~a~~fv 200 (206)
T PRK09140 139 AGIKALRAVLPPDVPVFAVGGVTP-ENLAPYLAAGAAGFGLGSALYRPG-QSAEEVAERARAFV 200 (206)
T ss_pred HHHHHHHCCCCCCCEEEECCCCCH-HHHHHHHHCCCCEEEECHHCCCCC-CCHHHHHHHHHHHH
T ss_conf 999998643899998995379888-889999986991999606515999-99999999999999
No 154
>KOG1799 consensus
Probab=97.74 E-value=3.2e-06 Score=61.69 Aligned_cols=29 Identities=10% Similarity=-0.044 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHHCC-CCCEEEE-ECCCC
Q ss_conf 24678877655542067-5526983-03336
Q gi|254780434|r 146 SKDFILDYVSGIRLFFT-IASYFTI-NISSP 174 (362)
Q Consensus 146 s~~~~~dy~~~~~~~~~-~aD~iEi-NiSCP 174 (362)
++...+.|..+++++.. +-+-+.| .+-|-
T Consensus 184 sdr~~e~~L~~f~eLk~~~p~~imIas~Mci 214 (471)
T KOG1799 184 SDRKAEQYLGTFGELKNVEPVVIMIASEMCI 214 (471)
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEHHHHHH
T ss_conf 4523999999999750148834634678988
No 155
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=97.74 E-value=0.00048 Score=47.09 Aligned_cols=82 Identities=16% Similarity=0.242 Sum_probs=57.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 85178650577774888999998764498299980665553234577544632211356454246899999997408974
Q gi|254780434|r 209 FVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKI 288 (362)
Q Consensus 209 ~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i 288 (362)
++=+-+-+++ .+..+-++++.++|+|-+++ .| .... | ....+.|+++++.+++.+
T Consensus 231 rL~VgAAIg~----~d~~eRa~~Lv~aGvD~lvi-D~---------AhGh------s-----~~v~~~ik~ik~~~~~~~ 285 (497)
T PRK07107 231 RYVVGAGINT----RDYEERVPALVEAGADVLCI-DS---------SDGY------S-----EWQKRTLDYIKEKYGDTV 285 (497)
T ss_pred CEEEEEECCC----CCHHHHHHHHHHCCCCEEEE-CC---------CCCC------H-----HHHHHHHHHHHHHCCCCC
T ss_conf 8889996377----78999999999859999980-34---------3535------2-----999999999998669876
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 8999678899999999998399975452
Q gi|254780434|r 289 AIIGTGGISSTKDALDKIMAGANLIQLY 316 (362)
Q Consensus 289 ~IIg~GGI~s~~Da~e~l~aGAs~VQi~ 316 (362)
.|.+|-|.+++.+...+.||||+|-|+
T Consensus 286 -~i~aGNVaT~~~~~~L~~aGad~vkVG 312 (497)
T PRK07107 286 -KVGAGNVVDRDGFLYLAEAGADFVKVG 312 (497)
T ss_pred -CCCCCCHHCHHHHHHHHHCCCCEEEEC
T ss_conf -341452126999999998089868971
No 156
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=97.73 E-value=0.0052 Score=40.11 Aligned_cols=44 Identities=27% Similarity=0.412 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf 6899999997408974899967889999999999839997545278
Q gi|254780434|r 273 STIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSA 318 (362)
Q Consensus 273 al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Ta 318 (362)
|...+++..+.. .+|+||=|||..-=|..+-|.||||+|+++|=
T Consensus 330 Av~~Va~~A~~~--Gi~VIADGGIr~SGDivKAlAaGA~aVMlGsl 373 (476)
T TIGR01302 330 AVYDVAEYAAQS--GIPVIADGGIRYSGDIVKALAAGADAVMLGSL 373 (476)
T ss_pred HHHHHHHHHHHC--CCEEEECCCCCCHHHHHHHHHHCCCEEHHCCC
T ss_conf 999999999727--99099837756255899999816772202342
No 157
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.73 E-value=0.00082 Score=45.50 Aligned_cols=83 Identities=23% Similarity=0.276 Sum_probs=58.4
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
Q ss_conf 89999987644982999806655532345775446322113564542468999999974089748999678899999999
Q gi|254780434|r 225 LDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALD 304 (362)
Q Consensus 225 i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e 304 (362)
..++.+.+.+. +..+++++ +++++ -++|+. +.+++++++.. ++|+|++|||.+.+|..+
T Consensus 148 ~~~~~~~~~~~-~~eii~t~--Id~dG-----------t~~G~d-----~~l~~~i~~~~--~~pvi~sGGv~s~~di~~ 206 (233)
T cd04723 148 PEELLRRLAKW-PEELIVLD--IDRVG-----------SGQGPD-----LELLERLAARA--DIPVIAAGGVRSVEDLEL 206 (233)
T ss_pred HHHHHHHHHHH-CCEEEEEE--ECCCC-----------CCCCCC-----HHHHHHHHHHC--CCCEEEECCCCCHHHHHH
T ss_conf 99999999965-89599986--43446-----------567779-----99999999868--998999889999999999
Q ss_pred HHHCCCCEEEECHHHHCCCHHHHHH
Q ss_conf 9983999754527877069789999
Q gi|254780434|r 305 KIMAGANLIQLYSAMIYEGISLPKR 329 (362)
Q Consensus 305 ~l~aGAs~VQi~Tali~~Gp~~~~~ 329 (362)
....|++.|-++||| |+|---+.+
T Consensus 207 l~~~g~~gvivg~al-h~g~i~l~e 230 (233)
T cd04723 207 LKKLGASGALVASAL-HDGGLTLED 230 (233)
T ss_pred HHHCCCCEEEEEHHH-HCCCCCHHH
T ss_conf 997899899986397-789978899
No 158
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.70 E-value=0.00075 Score=45.76 Aligned_cols=91 Identities=20% Similarity=0.247 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH
Q ss_conf 88999998764498299980665553234577544632211356454246899999997408974899967889999999
Q gi|254780434|r 224 ELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDAL 303 (362)
Q Consensus 224 ~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~ 303 (362)
+..++++.-.+.|+|-++.-+-|-+.. | +..-+.+|+++.+.+ .+|+--.|||.|-+|+.
T Consensus 31 DpVelA~~Y~e~GADElvFlDItAs~~---------------g---r~~~~~vv~~~A~~v--fiPltVGGGI~s~eD~~ 90 (256)
T COG0107 31 DPVELAKRYNEEGADELVFLDITASSE---------------G---RETMLDVVERVAEQV--FIPLTVGGGIRSVEDAR 90 (256)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCC---------------C---CCCHHHHHHHHHHHC--EEEEEECCCCCCHHHHH
T ss_conf 949999999775997699986225656---------------6---620799999997303--03247547758889999
Q ss_pred HHHHCCCCEEEECHHHHCCCHHHHHHHHHHHH
Q ss_conf 99983999754527877069789999999999
Q gi|254780434|r 304 DKIMAGANLIQLYSAMIYEGISLPKRIIQGLS 335 (362)
Q Consensus 304 e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~ 335 (362)
+.+++|||=|.+-|+.+.+ |.+++++-+..-
T Consensus 91 ~ll~aGADKVSINsaAv~~-p~lI~~~a~~FG 121 (256)
T COG0107 91 KLLRAGADKVSINSAAVKD-PELITEAADRFG 121 (256)
T ss_pred HHHHCCCCEEEECHHHHCC-HHHHHHHHHHHC
T ss_conf 9997699746528467509-599999999838
No 159
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.69 E-value=0.00012 Score=51.04 Aligned_cols=67 Identities=25% Similarity=0.310 Sum_probs=53.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHH
Q ss_conf 446322113564542468999999974089748999678899999999998399975452787706978999
Q gi|254780434|r 257 NHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPK 328 (362)
Q Consensus 257 ~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~ 328 (362)
...++||-.|.| ....+|+.+++.+. +.++|-.|||.|+++|.++..+|||.|-++|. +++.|....
T Consensus 159 iYLE~gsga~~p---v~~e~V~~v~~~l~-~~~LivGGGIrs~e~a~~~~~aGAD~IVvGn~-ie~d~~~~l 225 (229)
T PRK04169 159 VYLEYGGGAGDP---VPPEMVKAVKKALT-DTPLIVGGGIRSPEQAREMAKAGADTIVVGTI-IEEDIEKAL 225 (229)
T ss_pred EEEECCCCCCCC---CCHHHHHHHHHHCC-CCCEEEECCCCCHHHHHHHHHCCCCEEEECCC-EECCHHHHH
T ss_conf 999658888997---89999999997378-98789928969999999999769999998862-010799998
No 160
>PRK02145 consensus
Probab=97.69 E-value=0.00054 Score=46.70 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=60.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 99999876449829998066555323457754463221135645424689999999740897489996788999999999
Q gi|254780434|r 226 DDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDK 305 (362)
Q Consensus 226 ~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~ 305 (362)
.++++.-.+.|+|-+++.+-... ..| ++.-+..|+.+.+.+ .+||--.|||.|-+|+.++
T Consensus 34 ~~~a~~~~~~GadelhivDld~a---------------~~~---~~~~~~~I~~i~~~~--~iPi~vGGGIrs~e~~~~l 93 (257)
T PRK02145 34 VEIARRYDEQGADELTFLDITAT---------------SDG---RDLILPIIEAVASQV--FIPLTVGGGVRAVEDVRRL 93 (257)
T ss_pred HHHHHHHHHCCCCEEEEEECCCC---------------CCC---CHHHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHH
T ss_conf 99999999879998999978887---------------667---540899999999656--8748962773046889999
Q ss_pred HHCCCCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 98399975452787706978999999999
Q gi|254780434|r 306 IMAGANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 306 l~aGAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
+.+||+-|-+.|+. ++.|.+++++.+..
T Consensus 94 l~~GadkVii~s~a-~~np~~v~~~~~~f 121 (257)
T PRK02145 94 LNAGADKVSMNSSA-VANPQLVRDAADKY 121 (257)
T ss_pred HHCCCCEEEEHHHH-HHCCCHHHHHHHHC
T ss_conf 98199889841556-65930224578766
No 161
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.67 E-value=0.0003 Score=48.47 Aligned_cols=92 Identities=18% Similarity=0.188 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCH
Q ss_conf 77488899999876449829998066555323457754463221135645424689999999740897489996788999
Q gi|254780434|r 220 LSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISST 299 (362)
Q Consensus 220 ~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~ 299 (362)
.+.+++...+..+.+. - ..+....++||-.|.|..+ ++++++.+. .++|-.|||.|+
T Consensus 147 ~~~~~iaa~y~la~~~--~--------------g~~~~YlEagsga~~Pv~~---e~v~~v~~~----~~LivGGGIrs~ 203 (240)
T COG1646 147 LDKEDIAAYYALAEKY--L--------------GMPVVYLEAGSGAGDPVPV---EMVSRVLSD----TPLIVGGGIRSP 203 (240)
T ss_pred CCCHHHHHHHHHHHHH--H--------------CCEEEEEEECCCCCCCCCH---HHHHHHHCC----CEEEECCCCCCH
T ss_conf 9858899999999997--1--------------9858999806888998688---999986145----508985884989
Q ss_pred HHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHH
Q ss_conf 999999983999754527877069789999999999
Q gi|254780434|r 300 KDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLS 335 (362)
Q Consensus 300 ~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~ 335 (362)
++|.++..||||.+-++|. +++.|..+.++.+..+
T Consensus 204 E~A~~~a~agAD~IVtG~i-iee~~~~~~~~v~~~k 238 (240)
T COG1646 204 EQAREMAEAGADTIVTGTI-IEEDPDKALETVEAIK 238 (240)
T ss_pred HHHHHHHHCCCCEEEECCE-EECCHHHHHHHHHHHH
T ss_conf 9999999717998997700-2008788999999860
No 162
>pfam00218 IGPS Indole-3-glycerol phosphate synthase.
Probab=97.65 E-value=0.00083 Score=45.44 Aligned_cols=196 Identities=19% Similarity=0.244 Sum_probs=108.6
Q ss_pred EECCEECCCCE-E-ECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHH
Q ss_conf 88873359974-8-534688867798887403675241020013687899886268842555410000247777788999
Q gi|254780434|r 48 KVAGISLSNPL-G-MAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFS 125 (362)
Q Consensus 48 ~~~Gl~~~nPi-g-lAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~ 125 (362)
=++-++-++|- | +...+| -.+..+.+.+.|+.++.+=| + |++|. |.-..+.
T Consensus 50 iIAEiKraSPS~G~i~~~~d-p~~iA~~Y~~~GA~aiSVLT---d-------~~~F~----------------Gs~~~L~ 102 (254)
T pfam00218 50 LIAEVKKASPSKGLIREDFD-PAEIARAYEAAGASAISVLT---E-------PKYFQ----------------GSLEYLR 102 (254)
T ss_pred EEEEEECCCCCCCCCCCCCC-HHHHHHHHHHCCCCEEEEEC---C-------CCCCC----------------CCHHHHH
T ss_conf 89877268999998689899-99999999977983799842---6-------78679----------------8799999
Q ss_pred HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87641000121000110454246788776555420675526983033365322110000234321111224445565531
Q gi|254780434|r 126 RLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIK 205 (362)
Q Consensus 126 ~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~ 205 (362)
..++. .+.|+-- .|.+.|-.+..+...-+||++=|-.++ -+++.+..++......
T Consensus 103 ~vr~~-v~lPiLr--------KDFIid~yQI~ear~~GADaiLLI~~~---------L~~~~l~~l~~~a~~l------- 157 (254)
T pfam00218 103 EVREA-VSLPVLR--------KDFIIDEYQIYEARAYGADTVLLIVAV---------LSDELLEELYEYARSL------- 157 (254)
T ss_pred HHHHH-CCCCEEC--------CHHEEEHHHHHHHHHCCCCEEEHHHHC---------CCHHHHHHHHHHHHHH-------
T ss_conf 99986-4885111--------410465999999998088863144711---------9999999999999984-------
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 26885178650577774888999998764498299980665553234577544632211356454246899999997408
Q gi|254780434|r 206 TGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVG 285 (362)
Q Consensus 206 ~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~ 285 (362)
..-++|-+. +.++ ++.+.+.+++ ++.+|. |. +.+ +...+..-.+++..++
T Consensus 158 ---gl~~LvEvh---~~~E----l~~al~~~a~-iIGINN---Rn-L~t---------------f~vd~~~t~~L~~~ip 207 (254)
T pfam00218 158 ---GMEPLVEVH---NEEE----LERALALGAK-LIGVNN---RN-LKT---------------FEVDLNTTRRLAPMVP 207 (254)
T ss_pred ---CCEEEEEEC---CHHH----HHHHHHCCCC-EEEECC---CC-HHH---------------HHCCHHHHHHHHHHCC
T ss_conf ---886798868---9999----9999848997-896327---88-465---------------1005799999995589
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC-CHH
Q ss_conf 9748999678899999999998399975452787706-978
Q gi|254780434|r 286 PKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYE-GIS 325 (362)
Q Consensus 286 ~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~-Gp~ 325 (362)
++..+|+-.||.+.+|+..+..+|+++|-||+++|-. .|+
T Consensus 208 ~~~~~VsESGI~~~~di~~l~~~G~~~~LIGe~lm~~~dp~ 248 (254)
T pfam00218 208 EDVLLVAESGISTPEDVEKLAKHGANAFLVGESLMRAPDVR 248 (254)
T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHH
T ss_conf 89879983899999999999987999999896875799989
No 163
>KOG2334 consensus
Probab=97.65 E-value=0.00026 Score=48.90 Aligned_cols=160 Identities=19% Similarity=0.168 Sum_probs=104.4
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 21000110454246788776555420675526983033365------322110000234321111224445565531268
Q gi|254780434|r 135 PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPN------TPGLRSLQKKKNLERLLIHVMQTREEEKIKTGK 208 (362)
Q Consensus 135 pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPN------t~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~ 208 (362)
.++.-+|.+ +.+-+ .+.++.+...+.-+.+|..||- .+|...+.+++.+-.+|..++.. .
T Consensus 83 rlilQ~gT~-sa~lA----~e~A~lv~nDvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~---------~ 148 (477)
T KOG2334 83 RLILQIGTA-SAELA----LEAAKLVDNDVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKG---------N 148 (477)
T ss_pred EEEEEECCC-CHHHH----HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHC---------C
T ss_conf 079983488-68899----999997622444530037999754213477850106888899999999845---------7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 85178650577774888999998764498299980665553234577544632211356454246899999997408974
Q gi|254780434|r 209 FVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKI 288 (362)
Q Consensus 209 ~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i 288 (362)
++|+-.|+----+.++-.++++.....|+.+|++.-.+.+ +++-+|.....++.+.+.++. +
T Consensus 149 ~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt~d-----------------~r~~~~~~~~~i~~i~~~~~~-V 210 (477)
T KOG2334 149 KVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHCRTRD-----------------ERNQEPATKDYIREIAQACQM-V 210 (477)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCC-----------------CCCCCCCCHHHHHHHHHHHCC-C
T ss_conf 6651468984478420799999999628756999864266-----------------677788977999999987166-3
Q ss_pred EEEEECCCCC---HHHHHHHHH-CCCCEEEECHHHHCCCHHHH
Q ss_conf 8999678899---999999998-39997545278770697899
Q gi|254780434|r 289 AIIGTGGISS---TKDALDKIM-AGANLIQLYSAMIYEGISLP 327 (362)
Q Consensus 289 ~IIg~GGI~s---~~Da~e~l~-aGAs~VQi~Tali~~Gp~~~ 327 (362)
|||.-||+++ +.|...+.. .|++.|++..+. ..+|.+|
T Consensus 211 ~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A-~~n~SiF 252 (477)
T KOG2334 211 PVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAA-ESNPSIF 252 (477)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HCCCCEE
T ss_conf 37615541257763128888998534045534865-2598665
No 164
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=97.63 E-value=0.0014 Score=43.96 Aligned_cols=81 Identities=20% Similarity=0.315 Sum_probs=54.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 51786505777748889999987644982999806655532345775446322113564542468999999974089748
Q gi|254780434|r 210 VPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIA 289 (362)
Q Consensus 210 ~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~ 289 (362)
+=+-+=++|=- .+ .+-+..+.++|+|-|++ ++....+ ...+..|+++|+.+ +++.
T Consensus 228 L~VgAAvg~r~--~D-~~R~~~L~~AGvDv~vi----------DsshGhs-----------~~vl~~ik~~k~~Y-p~~~ 282 (476)
T TIGR01302 228 LIVGAAVGTRE--DD-LERAEALVEAGVDVIVI----------DSSHGHS-----------IYVLDSIKKIKKTY-PDLD 282 (476)
T ss_pred EEEEEEECCCC--CC-HHHHHHHHHCCCCEEEE----------ECCCCCC-----------HHHHHHHHHHHHHC-CEEE
T ss_conf 89998846898--61-89999999659658998----------1665453-----------78999999998638-8057
Q ss_pred EEEECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 999678899999999998399975452
Q gi|254780434|r 290 IIGTGGISSTKDALDKIMAGANLIQLY 316 (362)
Q Consensus 290 IIg~GGI~s~~Da~e~l~aGAs~VQi~ 316 (362)
|| .|=|-|.+.|...+.||||.|-|+
T Consensus 283 ii-aGNVaT~~~a~~LI~AgADg~rVG 308 (476)
T TIGR01302 283 II-AGNVATAEQAKALIDAGADGLRVG 308 (476)
T ss_pred EE-ECCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 99-434411788988985288878983
No 165
>PRK05211 consensus
Probab=97.62 E-value=0.00096 Score=45.04 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=24.5
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHH
Q ss_conf 9999999740897489996788999999999983999754527877069789999999
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQ 332 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~ 332 (362)
..|+++++.+ .+||--.|||.|-+|+.+++.+|||-|-+.|+. ++.|.+++++.+
T Consensus 55 ~~I~~i~~~~--~~Pl~vGGGIrs~~~i~~ll~~GadkViigs~a-~~np~li~~~~~ 109 (248)
T PRK05211 55 SWVSRVAEVI--DIPFCVAGGIKSVEDAREILSFGADKISINSPA-LADPTLITRLAD 109 (248)
T ss_pred HHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCCEEEECCHH-HHCCHHHHHHHH
T ss_conf 9999999767--985896278013899999998799889989767-619618999998
No 166
>PRK02621 consensus
Probab=97.60 E-value=0.00074 Score=45.79 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=14.8
Q ss_pred CEEECCCCCCCHHHHHHHHHCCCCEEECCCC
Q ss_conf 7485346888677988874036752410200
Q gi|254780434|r 57 PLGMAAGYDKNAEVPIELLKLGFGFVEIGTV 87 (362)
Q Consensus 57 PiglAaG~dk~~~~~~~l~~~G~G~v~~kti 87 (362)
|+-++.|. ++.+.++.++++|+.-|+++|.
T Consensus 76 pi~vGGGI-rs~e~~~~ll~~GadkVii~s~ 105 (254)
T PRK02621 76 PLTVGGGI-SSLEGIKELLRAGADKVSLNSA 105 (254)
T ss_pred CEEEECCE-EEHHHHHHHHHCCCCEEEECCH
T ss_conf 58996335-3579999999749998999886
No 167
>PRK01659 consensus
Probab=97.59 E-value=0.00087 Score=45.33 Aligned_cols=89 Identities=22% Similarity=0.195 Sum_probs=59.3
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
Q ss_conf 89999987644982999806655532345775446322113564542468999999974089748999678899999999
Q gi|254780434|r 225 LDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALD 304 (362)
Q Consensus 225 i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e 304 (362)
-.++|+.-.+.|+|-+++.+-..+ ..| ++.-...|+++.+.+ .+||.-.|||.|-+|+.+
T Consensus 32 P~~~ak~~~~~Gad~ihivDld~a---------------~~g---~~~n~~~I~~i~~~~--~ipi~vGGGIrs~e~~~~ 91 (252)
T PRK01659 32 PVEIAAAYNEAGADELVFLDITAT---------------HEG---RKTMVDVVEKVAAKV--FIPLTVGGGISSVKDMKR 91 (252)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCC---------------CCC---CHHHHHHHHHHHHHC--CCCEEEECCEECHHHHHH
T ss_conf 999999999879999999946766---------------568---864899999999756--974799633200688889
Q ss_pred HHHCCCCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 998399975452787706978999999999
Q gi|254780434|r 305 KIMAGANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 305 ~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
++.+|||-|-+.|+. ++.|.+++++.+..
T Consensus 92 ~l~~GadkViigs~a-~~n~~~i~~~~~~~ 120 (252)
T PRK01659 92 LLRAGADKVSINSAA-VLRPELITEGADHF 120 (252)
T ss_pred HHHCCCCEEEECHHH-HHCHHHHHHHHHHC
T ss_conf 874488559831777-52915321467646
No 168
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.59 E-value=0.0036 Score=41.20 Aligned_cols=45 Identities=27% Similarity=0.343 Sum_probs=37.3
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 99999997408974899967889999999999839997545278770
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
..++.++.-+ ++++++.+|||. .+.+.+|+.+|+.+|.++|.++-
T Consensus 142 ~ylkal~~p~-p~i~~~ptGGV~-~~n~~~yl~ag~~~vg~Gs~l~~ 186 (210)
T PRK07455 142 DYIKSLQGPL-GHIPLIPTGGVT-LENAQAFIQAGAIAVGLSSQLFP 186 (210)
T ss_pred HHHHHHHCCC-CCCCEEECCCCC-HHHHHHHHHCCCEEEEECHHHCC
T ss_conf 9999986548-999388789989-88899999689979998846189
No 169
>pfam03437 BtpA BtpA family. The BtpA protein is tightly associated with the thylakoid membranes, where it stabilizes the reaction centre proteins of photosystem I.
Probab=97.57 E-value=0.0037 Score=41.05 Aligned_cols=197 Identities=14% Similarity=0.189 Sum_probs=107.8
Q ss_pred HHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHH
Q ss_conf 79888740367524102001368789988626884255541000024777778899987641000121000110454246
Q gi|254780434|r 69 EVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKD 148 (362)
Q Consensus 69 ~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~ 148 (362)
+..+.+.+.|+-++.+--.--.|-.-+ . +...+-+| ..+..++++.- +.|+|||+-.|.. ..
T Consensus 33 ~ea~~l~~~GvDgvivEN~~D~Py~~~-------~--~~etvaam-------t~i~~~v~~~~-~iP~GvnvL~nd~-~a 94 (254)
T pfam03437 33 SDAMALEEGGFDAVILENYGDAPYLKT-------V--GPETVAAM-------TVIAGEVKSDV-SIPLGINVLRNDA-VA 94 (254)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCC-------C--CHHHHHHH-------HHHHHHHHHHC-CCCEEEEEECCCC-HH
T ss_conf 999999977998899806899777467-------7--66989999-------99999998744-8873677761785-89
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE----EECCCCCCHHH
Q ss_conf 78877655542067552698303336532211000023432111122444556553126885178----65057777488
Q gi|254780434|r 149 FILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIF----LKISPDLSEEE 224 (362)
Q Consensus 149 ~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~----vKLsPd~~~~~ 224 (362)
++ .. .....+||+-+|.=|=- ...+...++.....+...|.. .. ..+.|| +|-++.+.+..
T Consensus 95 al----ai--A~a~ga~FIRv~~~~g~-----~~~d~G~~~~~a~~~~r~R~~--l~--a~v~i~aDV~~Kh~~~l~~~~ 159 (254)
T pfam03437 95 AL----AI--AYAVGADFIRVNVLTGV-----AASDQGILEGNAGELARYRKL--LP--SRIKILADVHVKHAVHLGNRD 159 (254)
T ss_pred HH----HH--HHHHCCCEEEECCEECE-----EECCCCCCCCCHHHHHHHHHH--CC--CCCEEEEEECCCCCCCCCCCC
T ss_conf 99----99--99829976987137653-----335775315538999999997--19--995899755001254579999
Q ss_pred HHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH
Q ss_conf 89999987644-98299980665553234577544632211356454246899999997408974899967889999999
Q gi|254780434|r 225 LDDIAVEVLSH-KVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDAL 303 (362)
Q Consensus 225 i~~ia~~a~~~-g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~ 303 (362)
+.+.++.+.+. ++||++++.+.. | .+..+..+..+++.. ++|++-..||. .+-+.
T Consensus 160 ~~~~~~~~~~~~~aDaiivTG~~T------------------G---~~~~~~~l~~vk~~~--~~PvlvGSGvt-~~Ni~ 215 (254)
T pfam03437 160 IESAVLDTIERGLADAVILSGKTT------------------G---GEVDLEELKLAKETV--PVPVLVGSGVN-LENLE 215 (254)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCC------------------C---CCCCHHHHHHHHHHC--CCCEEEECCCC-HHHHH
T ss_conf 899999999826898999787302------------------7---999999999999626--99889957989-88999
Q ss_pred HHHHCCCCEEEECHHHHCCC
Q ss_conf 99983999754527877069
Q gi|254780434|r 304 DKIMAGANLIQLYSAMIYEG 323 (362)
Q Consensus 304 e~l~aGAs~VQi~Tali~~G 323 (362)
+++.. ||.+-|+|.|-..|
T Consensus 216 ~~l~~-ADG~IVGS~~K~~G 234 (254)
T pfam03437 216 ELWSI-ADGFIVGTSIKKGG 234 (254)
T ss_pred HHHHH-CCEEEEEHHEEECC
T ss_conf 99987-89999842230588
No 170
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.55 E-value=0.0016 Score=43.60 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=24.2
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHH
Q ss_conf 89999999740897489996788999999999983999754527877069789999999
Q gi|254780434|r 274 TIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQ 332 (362)
Q Consensus 274 l~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~ 332 (362)
+..|+.+.+.+ .+||--.|||.|-+|+.+++.+|||-|-++|+. ++.|.+++++.+
T Consensus 64 ~~~I~~i~~~~--~vpiqvGGGIrs~e~~~~ll~~GadkViigS~a-~~np~~i~~~~~ 119 (252)
T PRK13597 64 LDVVARVAERV--FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAA-VRRPELIRELAD 119 (252)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCCEEEECHHH-HHCCHHHHHHHH
T ss_conf 99999998626--982898477130899999985698779832666-749378999998
No 171
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.54 E-value=0.0018 Score=43.13 Aligned_cols=45 Identities=24% Similarity=0.422 Sum_probs=37.3
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 89999999740897489996788999999999983999754527877
Q gi|254780434|r 274 TIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMI 320 (362)
Q Consensus 274 l~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali 320 (362)
...++.++.-+ ++++++.+|||. .+.+-+|+.+||.+|.+++.++
T Consensus 143 ~~yikal~~p~-p~~~~~ptGGV~-~~N~~~~l~aG~~~vgvGs~l~ 187 (209)
T PRK06552 143 PSFISAIKGPL-PQVNIMVTGGVS-LDNVKDWFAAGADAVGIGGELN 187 (209)
T ss_pred HHHHHHHHCCC-CCCCEEECCCCC-HHHHHHHHHCCCCEEEECHHHC
T ss_conf 99999986648-999288638999-8889999987998899865770
No 172
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.0047 Score=40.39 Aligned_cols=163 Identities=17% Similarity=0.160 Sum_probs=83.9
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEECCC-CCHHHHHHHHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCHH-HHHH
Q ss_conf 2477777889998764100012100011045-4246788776555420-67552698303336532211000023-4321
Q gi|254780434|r 114 GFNNAGYHTVFSRLSKIQPTSPIGINLGANK-DSKDFILDYVSGIRLF-FTIASYFTINISSPNTPGLRSLQKKK-NLER 190 (362)
Q Consensus 114 Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~-~s~~~~~dy~~~~~~~-~~~aD~iEiNiSCPNt~g~~~~~~~~-~l~~ 190 (362)
|+.-.|++.+.. ++ ...+.|+|=-|-.+. +++-.+.-+.+-++++ ..++|.+-+.-.+-. .++ .+++
T Consensus 49 giR~~gv~dIka-i~-~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~--------RP~~~~~~ 118 (229)
T COG3010 49 GIRIEGVEDIKA-IR-AVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRP--------RPDGDLEE 118 (229)
T ss_pred EEEECCHHHHHH-HH-HHCCCCEEEEEECCCCCCCCEECCCHHHHHHHHHCCCCEEEEECCCCC--------CCCCHHHH
T ss_conf 686120656999-98-617887688880589999935566189999999779909996255687--------98435999
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC--CC
Q ss_conf 1112244455655312688517865057777488899999876449829998066555323457754463221135--64
Q gi|254780434|r 191 LLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSG--SP 268 (362)
Q Consensus 191 ~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG--~~ 268 (362)
++... .....=+.+-.| + +++ +..|.+.|+|-|- ||.+ |+-+ ..
T Consensus 119 ~i~~~----------k~~~~l~MAD~S---t---~ee-~l~a~~~G~D~IG---TTLs--------------GYT~~~~~ 164 (229)
T COG3010 119 LIARI----------KYPGQLAMADCS---T---FEE-GLNAHKLGFDIIG---TTLS--------------GYTGYTEK 164 (229)
T ss_pred HHHHH----------HCCCCEEEECCC---C---HHH-HHHHHHCCCCEEE---CCCC--------------CCCCCCCC
T ss_conf 99973----------357947873259---8---888-8889973996782---2420--------------14689987
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHH
Q ss_conf 542468999999974089748999678899999999998399975452787706978
Q gi|254780434|r 269 LFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGIS 325 (362)
Q Consensus 269 i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~ 325 (362)
....-..+++++.+ .+.++|+=|.+.|+++|.+-+..||++|-|+||. -+ |+
T Consensus 165 ~~~pDf~lvk~l~~---~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAI-TR-p~ 216 (229)
T COG3010 165 PTEPDFQLVKQLSD---AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAI-TR-PE 216 (229)
T ss_pred CCCCCHHHHHHHHH---CCCEEEEECCCCCHHHHHHHHHHCCEEEEECCCC-CC-HH
T ss_conf 78972899999986---7993995178799999999997188089987433-78-79
No 173
>PRK04281 consensus
Probab=97.53 E-value=0.0014 Score=44.00 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=49.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 99999876449829998066555323457754463221135645424689999999740897489996788999999999
Q gi|254780434|r 226 DDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDK 305 (362)
Q Consensus 226 ~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~ 305 (362)
.++|+.-.+.|+|-+++.+-... ..|. +.-+..|+++.+.+ .+||--.|||.|-+|+.++
T Consensus 33 ~~~ak~~~~~GadelhivDld~a---------------~~~~---~~~~~~I~~i~~~~--~vpi~vGGGIrs~e~~~~l 92 (254)
T PRK04281 33 VEAAKRYNGEGADELTFLDITAS---------------SDNR---DTILHIIEEVAGQV--FIPLTVGGGVRTVADIRRL 92 (254)
T ss_pred HHHHHHHHHCCCCEEEEEECCCC---------------CCCC---HHHHHHHHHHHHHC--CCCEEEECCEEECHHHHHH
T ss_conf 99999999869999999968898---------------7775---30899999998507--9628997775451889999
Q ss_pred HHCCCCEEEECHHHHCCCHHHHHHHHHH
Q ss_conf 9839997545278770697899999999
Q gi|254780434|r 306 IMAGANLIQLYSAMIYEGISLPKRIIQG 333 (362)
Q Consensus 306 l~aGAs~VQi~Tali~~Gp~~~~~I~~~ 333 (362)
+.+|||-|-++|+.+ +.|.+++++.+.
T Consensus 93 l~~GadkViigs~a~-~np~~l~~~~~~ 119 (254)
T PRK04281 93 LNAGADKVSINTAAV-TRPDLIDEAAGF 119 (254)
T ss_pred HHCCCCEEEECHHHH-HCCHHHHHHHHH
T ss_conf 976998899777676-492676767875
No 174
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=97.50 E-value=0.0021 Score=42.78 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=43.9
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99999997408974899967889999999999839997545278770697899999999999999838997789
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFEN 348 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e 348 (362)
..++.++.-+ ++++++.+|||.- +++.+|+.+||.+|.++|.++-+ ++++++.|+.|++
T Consensus 137 ~~lkal~~p~-p~~~f~ptGGv~~-~N~~~yl~~g~v~~~~GS~l~~~-------------~li~~~d~~~It~ 195 (196)
T pfam01081 137 PAIKALAGPF-PQVRFCPTGGIHP-ANVRDYLALPNILCVGGSWLVPA-------------SLIQKGDWDRITA 195 (196)
T ss_pred HHHHHHHCCC-CCCEEEEECCCCH-HHHHHHHHCCCEEEEECHHHCCH-------------HHHHCCCHHHHHC
T ss_conf 9999985779-9986998079898-88999996898699989364898-------------8987199877643
No 175
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.47 E-value=0.0017 Score=43.37 Aligned_cols=30 Identities=33% Similarity=0.478 Sum_probs=14.5
Q ss_pred CEEECCCCCCCHHHHHHHHHCCCCEEECCCC
Q ss_conf 7485346888677988874036752410200
Q gi|254780434|r 57 PLGMAAGYDKNAEVPIELLKLGFGFVEIGTV 87 (362)
Q Consensus 57 PiglAaG~dk~~~~~~~l~~~G~G~v~~kti 87 (362)
|+-++.|. ++-+.++.++++|+--|+++|.
T Consensus 76 pi~vGGGI-rs~e~~~~ll~~GadkViigs~ 105 (253)
T PRK01033 76 PLCYGGGI-KTVEQAKRIFSLGVEKVSISTA 105 (253)
T ss_pred CEEEECCC-CCHHHHHHHHHCCCCEEEECCH
T ss_conf 88986881-2168889998679866999987
No 176
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.47 E-value=0.0019 Score=42.98 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=68.0
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
Q ss_conf 89999987644982999806655532345775446322113564542468999999974089748999678899999999
Q gi|254780434|r 225 LDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALD 304 (362)
Q Consensus 225 i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e 304 (362)
-.++++...+.|+|-+.+.+-..+ ..| .+.-...|+++.+.+ .+||--.|||.|-+|+.+
T Consensus 32 P~~~ak~~~~~g~d~lhivDld~a---------------~~~---~~~n~~~I~~i~~~~--~ipi~vGGGIrs~e~~~~ 91 (232)
T TIGR03572 32 PVNAARIYNAKGADELIVLDIDAS---------------KRG---REPLFELISNLAEEC--FMPLTVGGGIRSLEDAKK 91 (232)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCC---------------CCC---CCCHHHHHHHHHHHC--CCCEEEEECEEEHHHHHH
T ss_conf 999999999869999999968764---------------348---821799999999972--985899713303899999
Q ss_pred HHHCCCCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 998399975452787706978999999999
Q gi|254780434|r 305 KIMAGANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 305 ~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
++.+||+-|-++|+. ++.|.+++++.+..
T Consensus 92 ll~~GadkViigs~a-~~~p~~~~~~~~~~ 120 (232)
T TIGR03572 92 LLSLGADKVSINTAA-LENPDLIEEAARRF 120 (232)
T ss_pred HHHCCCCEEEECHHH-HHCCHHHHHHHHHC
T ss_conf 997699689934545-21935778999986
No 177
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.46 E-value=0.0015 Score=43.77 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=23.4
Q ss_pred CCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 99748534688867798887403675241020013
Q gi|254780434|r 55 SNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTP 89 (362)
Q Consensus 55 ~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~ 89 (362)
.=|+-++.|. ++-+.++.++++|+.-|+++|...
T Consensus 74 ~~pi~vGGGI-rs~e~~~~ll~~GadkVvigs~a~ 107 (253)
T PRK02083 74 FIPLTVGGGI-RSVEDARRLLRAGADKVSINSAAV 107 (253)
T ss_pred CCCEEEECCC-CCHHHHHHHHHCCCCEEEECCHHH
T ss_conf 9877851762-138987689877987899998465
No 178
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.45 E-value=0.0032 Score=41.53 Aligned_cols=87 Identities=18% Similarity=0.168 Sum_probs=55.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 99999876449829998066555323457754463221135645424689999999740897489996788999999999
Q gi|254780434|r 226 DDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDK 305 (362)
Q Consensus 226 ~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~ 305 (362)
.++|+...+.|++-+.+..-.. . .|. +....+|+++.+.+ .+||--.|||.|-+|+.++
T Consensus 32 ~~~a~~~~~~Ga~~lhvvDLda-------a---------~g~---~~N~~~I~~i~~~~--~~piqvGGGIrs~e~~~~~ 90 (231)
T PRK13586 32 LKIAEELYNEGYDSIHVVDLDA-------A---------EGK---GDNEEYIKRICKIG--FSWIQVGGGIRDVEKAERL 90 (231)
T ss_pred HHHHHHHHHCCCCEEEEEECCC-------C---------CCC---CCHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHH
T ss_conf 9999999987999899996715-------6---------899---84399999999745--9857985671769999999
Q ss_pred HHCCCCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 98399975452787706978999999999
Q gi|254780434|r 306 IMAGANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 306 l~aGAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
+.+||+-|-++|+. ++.|.++.++.+..
T Consensus 91 l~~Ga~kViigS~a-~~np~~~~~~~~~~ 118 (231)
T PRK13586 91 LSYDCSAIVMSTLP-FTNPDTFRRIVAGI 118 (231)
T ss_pred HHCCCCEEEECHHH-HHCHHHHHHHHHHH
T ss_conf 97799889976888-76959999999984
No 179
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.41 E-value=0.0048 Score=40.32 Aligned_cols=81 Identities=23% Similarity=0.277 Sum_probs=53.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
Q ss_conf 89999987644982999806655532345775446322113564542468999999974089748999678899999999
Q gi|254780434|r 225 LDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALD 304 (362)
Q Consensus 225 i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e 304 (362)
..+.++...+ ++..+++++ +++++ -++|- .. +.+.. .+.|+|++|||.+.+|..+
T Consensus 145 ~~~~~~~~~~-~~~~ii~td--I~~dG-----------t~~G~-------~~---~~~~~-~~~~iiasGGv~s~~Dl~~ 199 (228)
T PRK04128 145 VEDAYKMLRN-YVNRFIYTS--IERDG-----------TLTGI-------EN---IERFW-GDEEFIYAGGVSSIEDVKK 199 (228)
T ss_pred HHHHHHHHHH-HCCCEEEEE--ECCCC-----------CCCCH-------HH---HHHHC-CCCCEEEECCCCCHHHHHH
T ss_conf 9999999986-384537631--26543-----------00388-------99---99861-6896898789899999999
Q ss_pred HHHCCCCEEEECHHHHCCCHHHHHHHH
Q ss_conf 998399975452787706978999999
Q gi|254780434|r 305 KIMAGANLIQLYSAMIYEGISLPKRII 331 (362)
Q Consensus 305 ~l~aGAs~VQi~Tali~~Gp~~~~~I~ 331 (362)
...+|++.|-+++|+ |+|---+++++
T Consensus 200 l~~~g~~gvivG~Al-~~g~i~l~e~~ 225 (228)
T PRK04128 200 LAEIGFSGAIIGKAL-YEGRISLEELL 225 (228)
T ss_pred HHHCCCCEEEEEHHH-HCCCCCHHHHH
T ss_conf 996799899998538-56997899994
No 180
>PRK00830 consensus
Probab=97.40 E-value=0.0014 Score=43.88 Aligned_cols=88 Identities=16% Similarity=0.210 Sum_probs=55.5
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 99999876449829998066555323457754463221135645424689999999740897489996788999999999
Q gi|254780434|r 226 DDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDK 305 (362)
Q Consensus 226 ~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~ 305 (362)
.+.|+.-.+.|+|-+++.+-.. ...|. +.-...|+++++.+ .+||--.|||.|-+|+.++
T Consensus 37 ~~~ak~~~~~gadelhivDld~---------------a~~g~---~~~~~~I~~i~~~~--~~pi~vGGGIrs~e~~~~l 96 (273)
T PRK00830 37 VELAKRYYEDGADELVFLDITA---------------SHEGR---ATMIDVIERTAEEV--FIPLTVGGGIRSIEDIRQI 96 (273)
T ss_pred HHHHHHHHHCCCCEEEEEEEEC---------------CCCCC---CCHHHHHHHHHHHC--CCCEEEECCEEECCCHHHH
T ss_conf 9999999987999899995324---------------64688---42799999999866--9958960884377328999
Q ss_pred HHCCCCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 98399975452787706978999999999
Q gi|254780434|r 306 IMAGANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 306 l~aGAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
+.+|||-|-++|+++. .|.+++++.+..
T Consensus 97 l~~GadkVvIgS~a~~-np~~v~~~~~~f 124 (273)
T PRK00830 97 LRAGADKVSVNTAAVK-NPEFIREASDIF 124 (273)
T ss_pred HHCCCCEEECHHHHHH-CCHHHHHHHHHC
T ss_conf 9769863983798985-907789999876
No 181
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.39 E-value=0.0027 Score=42.02 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=45.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 99999876449829998066555323457754463221135645424689999999740897489996788999999999
Q gi|254780434|r 226 DDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDK 305 (362)
Q Consensus 226 ~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~ 305 (362)
.++|+.-.+.|++-+.+..-. |-..|. +.....|+.+.+.+ .+||--.|||.|-+|+.++
T Consensus 32 ~~~A~~~~~~Ga~~lhvvDLd---------------~A~~g~---~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~~~~~ 91 (241)
T PRK00748 32 LAQAQAWQDQGAEWLHLVDLD---------------GAFAGR---PVNLELIEAIVAAV--DIPVQLGGGIRDLETVEAY 91 (241)
T ss_pred HHHHHHHHHCCCCEEEEEECC---------------CCCCCC---CCHHHHHHHHHHHC--CCCEEEECCCCCHHHHHHH
T ss_conf 999999998799989999785---------------420288---20799999999867--9999982770749999999
Q ss_pred HHCCCCEEEECHHHHCCCHHHHHHHHHH
Q ss_conf 9839997545278770697899999999
Q gi|254780434|r 306 IMAGANLIQLYSAMIYEGISLPKRIIQG 333 (362)
Q Consensus 306 l~aGAs~VQi~Tali~~Gp~~~~~I~~~ 333 (362)
+.+||+-|-++|+. ++.|.+++++.+.
T Consensus 92 l~~GadkVvigS~a-~~n~~~i~~~~~~ 118 (241)
T PRK00748 92 LDAGVARVIIGTAA-VKNPELVKEACKK 118 (241)
T ss_pred HHCCCCEEEECCHH-HHCHHHHHHHHHH
T ss_conf 97697758864710-3396899999862
No 182
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein; InterPro: IPR005992 This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria..
Probab=97.39 E-value=0.0026 Score=42.11 Aligned_cols=213 Identities=16% Similarity=0.246 Sum_probs=126.9
Q ss_pred CCCCCCCEEEECCEECCCCEEECCCCCC--CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCC
Q ss_conf 7889631168887335997485346888--67798887403675241020013687899886268842555410000247
Q gi|254780434|r 39 VHSDPRLNTKVAGISLSNPLGMAAGYDK--NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFN 116 (362)
Q Consensus 39 ~~~~~~L~~~~~Gl~~~nPiglAaG~dk--~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~ 116 (362)
...+.|..=++.-.+|.=|| +|+-.|- +-++.=.+.++| .=+.+|.-||.
T Consensus 28 dpk~v~t~W~iDAy~felP~-~a~p~Davvsp~~ai~lg~lG---------------------------gLGV~N~EGL~ 79 (376)
T TIGR01304 28 DPKDVDTAWQIDAYRFELPF-LAHPMDAVVSPEFAIELGELG---------------------------GLGVLNLEGLW 79 (376)
T ss_pred CCCCCCCCCCCCEEEECCCC-CCCCCCCCCCHHHHHHHHHCC---------------------------CCEEEECCHHH
T ss_conf 70002100102312324650-116654424769999987225---------------------------43154110231
Q ss_pred CCC--HHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 777--788999876410001210001104542467887765554206755269830333653221100002343211112
Q gi|254780434|r 117 NAG--YHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIH 194 (362)
Q Consensus 117 N~G--~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~ 194 (362)
.+. .+.++.++-... .. .. .-..+...+++++ |.= -++|.+.+ .
T Consensus 80 tRh~D~~~~ld~i~~~~----------~~--~P-~~~~a~R~LQELy--AaP----------------l~~eLl~~---r 125 (376)
T TIGR01304 80 TRHEDPEPLLDKIAEAD----------KE--DP-DQAEATRLLQELY--AAP----------------LKPELLGK---R 125 (376)
T ss_pred HHHCCHHHHHHHHHHHH----------HC--CC-CHHHHHHHHHHHH--HCC----------------CCHHHHHH---H
T ss_conf 11137789999999875----------15--88-4789988889986--367----------------98647899---9
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 24445565531268851786505777748889999987644982999806655532345775446322113564542468
Q gi|254780434|r 195 VMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKST 274 (362)
Q Consensus 195 v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al 274 (362)
+.+.|+ .. .=.-|.|||. +..+++..+.++|+|=+++=-|+++-.++.... |. +|
T Consensus 126 i~~vr~------aG-~i~Av~lsPq----~~~~~a~~vv~AG~DLLvIqgT~vSaehv~~e~---------~E-----~L 180 (376)
T TIGR01304 126 IAEVRD------AG-VITAVRLSPQ----NASKLAPVVVEAGADLLVIQGTVVSAEHVSSES---------GE-----PL 180 (376)
T ss_pred HHHHHH------CC-CEEEEEECCH----HHHHHHHHHHHHCCCEEEEHHHHHHHEEECCCC---------CC-----CH
T ss_conf 999972------68-4899986653----167888999971730042001232010046888---------87-----21
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEC--H-HHHC--C--------CHHHHHHHHHHHHHHHHHC
Q ss_conf 999999974089748999678899999999998399975452--7-8770--6--------9789999999999999983
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLY--S-AMIY--E--------GISLPKRIIQGLSDFLNKE 341 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~--T-ali~--~--------Gp~~~~~I~~~L~~~l~~~ 341 (362)
++...+ +.+ ++|+| +||+.+.+-++++|++||-.|-|+ + +-.. + -+..+-+.-..=.+||++-
T Consensus 181 nLk~fi-~eL--DvPVv-~Ggv~~Y~~ALhLMRtGAagvlVGfgG~ga~~T~~~vLG~~VpmATAiAD~AAARrDYLdEt 256 (376)
T TIGR01304 181 NLKKFI-QEL--DVPVV-AGGVVTYTTALHLMRTGAAGVLVGFGGPGAATTTREVLGIEVPMATAIADVAAARRDYLDET 256 (376)
T ss_pred HHHHHH-HHC--CCCEE-ECCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf 488897-548--98878-83853088999986301137886457887342466534210672678999997301133306
Q ss_pred C
Q ss_conf 8
Q gi|254780434|r 342 N 342 (362)
Q Consensus 342 G 342 (362)
|
T Consensus 257 G 257 (376)
T TIGR01304 257 G 257 (376)
T ss_pred C
T ss_conf 8
No 183
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.38 E-value=0.0016 Score=43.58 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=24.8
Q ss_pred CCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 99748534688867798887403675241020013
Q gi|254780434|r 55 SNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTP 89 (362)
Q Consensus 55 ~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~ 89 (362)
.-|+-++.|. ++.+.++.++++|+.-|+++|...
T Consensus 71 ~~pi~vGGGI-rs~~~~~~~l~~GadkVvigs~~~ 104 (243)
T cd04731 71 FIPLTVGGGI-RSLEDARRLLRAGADKVSINSAAV 104 (243)
T ss_pred CCCEEEEEEE-EEHHHHHHHHHCCCCEEEECCCCC
T ss_conf 9868998506-647999999977997899898442
No 184
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=97.36 E-value=0.00044 Score=47.32 Aligned_cols=54 Identities=24% Similarity=0.142 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHH
Q ss_conf 246899999997408974899967889999999999839997545278770697899
Q gi|254780434|r 271 LKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLP 327 (362)
Q Consensus 271 ~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~ 327 (362)
+....+++..++.. ++++|-.|||.|.++|.++..||||.|-++|. +++.|..-
T Consensus 168 ~vp~~vi~~~~~~~--~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~-iee~~d~~ 221 (231)
T pfam01884 168 PVPEEVIAVKKVLD--DARLIVGGGIKSGEKAKEMARAGADVIVTGNV-IEEKGDRE 221 (231)
T ss_pred CCCHHHHHHHHCCC--CCCEEEECCCCCHHHHHHHHHCCCCEEEECCC-EEECCCHH
T ss_conf 98999999996468--97689969979999999999779999997971-44177699
No 185
>PRK03220 consensus
Probab=97.35 E-value=0.0038 Score=40.98 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=21.0
Q ss_pred CCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 9748534688867798887403675241020013
Q gi|254780434|r 56 NPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTP 89 (362)
Q Consensus 56 nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~ 89 (362)
-|+-++.|. ++.+.++.++++|+.-|+++|...
T Consensus 76 ~pi~vGGGI-rs~e~~~~ll~~GadkVvigs~a~ 108 (257)
T PRK03220 76 IPLTVGGGV-RTVEDVDSLLRAGADKVSVNTAAI 108 (257)
T ss_pred CCEEEECCC-CCHHHHHHHHHCCCCEEECHHHHH
T ss_conf 648984785-879999999981975087206677
No 186
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.34 E-value=0.016 Score=36.71 Aligned_cols=213 Identities=18% Similarity=0.229 Sum_probs=117.0
Q ss_pred CEEEECCEECCCCEEECCCCCCCHHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHH
Q ss_conf 11688873359974853468886779888740-36752410200136878998862688425554100002477777889
Q gi|254780434|r 45 LNTKVAGISLSNPLGMAAGYDKNAEVPIELLK-LGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTV 123 (362)
Q Consensus 45 L~~~~~Gl~~~nPiglAaG~dk~~~~~~~l~~-~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~ 123 (362)
-.-++.|.+|.+.+.+..|=-++-+.++.... .|. ++=||..+ |. ....+|-+.+
T Consensus 6 d~l~i~g~~f~SRLllGTgky~s~~~~~~av~asg~---~ivTvAlR-----------R~----------~~~~~~~~~~ 61 (262)
T COG2022 6 DMLTIAGKTFDSRLLLGTGKYPSPAVLAEAVRASGS---EIVTVALR-----------RV----------NATRPGGDGI 61 (262)
T ss_pred CCEEECCEEEEEEEEEECCCCCCHHHHHHHHHHCCC---CEEEEEEE-----------EE----------CCCCCCCCHH
T ss_conf 522244746531588724789998999999997278---66999988-----------62----------1578885308
Q ss_pred HHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99876410001210001104542467887765554206755269830-33365322110000234321111224445565
Q gi|254780434|r 124 FSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTIN-ISSPNTPGLRSLQKKKNLERLLIHVMQTREEE 202 (362)
Q Consensus 124 ~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiN-iSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~ 202 (362)
++.|... ++.+--|-.+-.+.++++. -+++.++... .|.+-+- ++++.| ++ |+.++ -+ +.-+..
T Consensus 62 l~~l~~~--~~~~LPNTaGc~taeEAv~-tArlARE~~~-t~wiKlEVi~d~~t-----Ll-PD~~e----tl-~Aae~L 126 (262)
T COG2022 62 LDLLIPL--GVTLLPNTAGCRTAEEAVR-TARLAREALG-TNWIKLEVIGDEKT-----LL-PDPIE----TL-KAAEQL 126 (262)
T ss_pred HHHHHHC--CCEECCCCCCCCCHHHHHH-HHHHHHHHCC-CCEEEEEEECCCCC-----CC-CCHHH----HH-HHHHHH
T ss_conf 8774113--8676787645588999999-9999999706-98489999368765-----48-87578----99-999999
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 53126885178650577774888999998764498299980665553234577544632211356454246899999997
Q gi|254780434|r 203 KIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQ 282 (362)
Q Consensus 203 ~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~ 282 (362)
... . |+=| |+.+++ .-+++.+++.|+..+-- +..+. . ||.. .....++..+++
T Consensus 127 v~e--G----F~Vl-PY~~dD--~v~arrLee~GcaavMP---------l~aPI-G------Sg~G--~~n~~~l~iiie 179 (262)
T COG2022 127 VKE--G----FVVL-PYTTDD--PVLARRLEEAGCAAVMP---------LGAPI-G------SGLG--LQNPYNLEIIIE 179 (262)
T ss_pred HHC--C----CEEE-ECCCCC--HHHHHHHHHCCCEEECC---------CCCCC-C------CCCC--CCCHHHHHHHHH
T ss_conf 867--9----8885-036887--89999998649668633---------56656-6------7867--578899999997
Q ss_pred HCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-CCHH
Q ss_conf 408974899967889999999999839997545278770-6978
Q gi|254780434|r 283 RVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY-EGIS 325 (362)
Q Consensus 283 ~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~-~Gp~ 325 (362)
+. ++|+|---||-++.||..-|..|+|+|-+-||.-- +.|-
T Consensus 180 ~a--~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv 221 (262)
T COG2022 180 EA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPV 221 (262)
T ss_pred HC--CCCEEEECCCCCHHHHHHHHHHCCCEEEHHHHHHCCCCHH
T ss_conf 38--9988986798976688999860554323256766037869
No 187
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.32 E-value=0.0023 Score=42.47 Aligned_cols=194 Identities=16% Similarity=0.178 Sum_probs=103.6
Q ss_pred EECCEECCCCE-E-ECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHH
Q ss_conf 88873359974-8-534688867798887403675241020013687899886268842555410000247777788999
Q gi|254780434|r 48 KVAGISLSNPL-G-MAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFS 125 (362)
Q Consensus 48 ~~~Gl~~~nPi-g-lAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~ 125 (362)
=+.-+|-.+|- | +...+| -.+.-+.+.+.|+.++.+=| + ++.|. |....+.
T Consensus 52 vIAEiKraSPSkG~I~~~~d-p~~iA~~Ye~~GA~aISVLT---e-------~~~F~----------------Gsl~dL~ 104 (695)
T PRK13802 52 VIAEIKRASPSKGHLSDIPD-PAALAREYEKGGASAISVLT---E-------GRKFL----------------GSLDDFD 104 (695)
T ss_pred EEEEEECCCCCCCCCCCCCC-HHHHHHHHHHCCCEEEEEEC---C-------CCCCC----------------CCHHHHH
T ss_conf 99986069998787688899-99999999987984999825---8-------67679----------------8999999
Q ss_pred HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87641000121000110454246788776555420675526983033365322110000234321111224445565531
Q gi|254780434|r 126 RLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIK 205 (362)
Q Consensus 126 ~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~ 205 (362)
.+++. .+.|+.- .|.+.|-.+..+.-.-+||++=|=+++ -+++.|..++.....-
T Consensus 105 ~vr~~-v~lPvLR--------KDFIvD~yQI~EAr~~GADaILLIva~---------L~~~~L~~l~~~a~~L------- 159 (695)
T PRK13802 105 KVRAA-VHIPVLR--------KDFIVTDYQIFEARAHGADLVLLIVAA---------LDDAQLKHLLDLAHEL------- 159 (695)
T ss_pred HHHHH-CCCCEEE--------CCEECCHHHHHHHHHCCCCHHHHHHHH---------CCHHHHHHHHHHHHHC-------
T ss_conf 99985-8998570--------233063999999998287889999986---------6999999999999986-------
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 26885178650577774888999998764498299980665553234577544632211356454246899999997408
Q gi|254780434|r 206 TGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVG 285 (362)
Q Consensus 206 ~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~ 285 (362)
..-.+|-+- +. .+ ++.+.++|++ |+-+|- |+ +.+ +.+-+..-.+++..++
T Consensus 160 ---Gm~~LVEVH---~~---~E-l~rAl~~ga~-iIGINn---Rn-L~T---------------f~vD~~~~~~Lap~iP 209 (695)
T PRK13802 160 ---NMTVLVETH---TR---EE-IERARKAGAK-VIGINA---RN-LKN---------------LKVDVNKYNELAADLP 209 (695)
T ss_pred ---CCEEEEEEC---CH---HH-HHHHHHCCCC-EEEEEC---CC-CCC---------------CEECHHHHHHHHHHCC
T ss_conf ---991799978---99---99-9999847999-899878---98-864---------------2287799999984689
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 97489996788999999999983999754527877069
Q gi|254780434|r 286 PKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEG 323 (362)
Q Consensus 286 ~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~G 323 (362)
.++..++-.||.+++|+..+-.+|||+|-|+-+++-.+
T Consensus 210 ~~~v~VAESGI~~~~Dv~~~a~aGadAvLVGEalvta~ 247 (695)
T PRK13802 210 DDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATAD 247 (695)
T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHCCC
T ss_conf 98579956899998999999977999999780341589
No 188
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=97.24 E-value=0.021 Score=36.05 Aligned_cols=201 Identities=18% Similarity=0.199 Sum_probs=106.5
Q ss_pred CCCEEECCCCCCCHHHHHHHHHCC--CCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 997485346888677988874036--752410200136878998862688425554100002477777889998764100
Q gi|254780434|r 55 SNPLGMAAGYDKNAEVPIELLKLG--FGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQP 132 (362)
Q Consensus 55 ~nPiglAaG~dk~~~~~~~l~~~G--~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~ 132 (362)
++++.+|.=++.--+.++-+..++ ...+++|+-. + -+.|.+ +.++|++..
T Consensus 3 ~~~l~vALD~~~~~~a~~l~~~l~~~i~~iKiG~~l---------------------~-----~~~G~~-~i~~l~~~~- 54 (215)
T PRK13813 3 DSRIILALDVYDREEALKIAEELSDYVDAIKVNWPL---------------------I-----LASGLS-IIRELKQYT- 54 (215)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECHHH---------------------H-----HHCCHH-HHHHHHHHC-
T ss_conf 888799961799999999999847756099989799---------------------8-----754999-999999858-
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 01210001104542467887765554206755269830333653221100002343211112244455655312688517
Q gi|254780434|r 133 TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPI 212 (362)
Q Consensus 133 ~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi 212 (362)
|++.-. +..+.++...-+++.+-+ ..+|+++++-+++. +-+.. ..+... +....+=+
T Consensus 55 --~If~Dl-K~~DIpnTv~~~~~~~~~--~ga~~vTvh~~~g~----------~~i~~----a~~~~~----~~~~~v~~ 111 (215)
T PRK13813 55 --PVIADL-KVADIPNTNRLICEKVFE--AGADGIIVHGFTGR----------DSLKA----VVEAAK----RYGKKVFV 111 (215)
T ss_pred --CEEEEE-EECCCHHHHHHHHHHHHH--CCCCEEEEECCCCH----------HHHHH----HHHHHH----HCCCCEEE
T ss_conf --907998-624463799999999996--29999999256889----------99999----999876----41984599
Q ss_pred EEECCC----CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 865057----7774888999998764498299980665553234577544632211356454246899999997408974
Q gi|254780434|r 213 FLKISP----DLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKI 288 (362)
Q Consensus 213 ~vKLsP----d~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i 288 (362)
...|+- +...+....+++.+.+.|++|+++.-+. ..-+..+|+.++.++
T Consensus 112 v~~ls~~g~~~~~~~~~~~~~~~a~~~g~~Gvv~~~~~---------------------------~~~~~~ir~~~~~~~ 164 (215)
T PRK13813 112 VVEMSHPGALEFINPVADKLAKLANEAGAFGVVAPATR---------------------------PERVRAIRRRLGDDL 164 (215)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCC---------------------------HHHHHHHHHHCCCCC
T ss_conf 99846877465699999999999998699989978988---------------------------799999998628874
Q ss_pred EEEEECCCCC-HHHHHHHHHCCCCEEEECHHHHC-CCH-HHHHHHHHHH
Q ss_conf 8999678899-99999999839997545278770-697-8999999999
Q gi|254780434|r 289 AIIGTGGISS-TKDALDKIMAGANLIQLYSAMIY-EGI-SLPKRIIQGL 334 (362)
Q Consensus 289 ~IIg~GGI~s-~~Da~e~l~aGAs~VQi~Tali~-~Gp-~~~~~I~~~L 334 (362)
.++ +.||.- +.+..+.+.+|||.+=|+.+..- +.| ..+++|.+++
T Consensus 165 ~iv-tPGI~~~~~~~~~ai~~Gad~iVVGR~It~A~dP~~aa~~i~~~i 212 (215)
T PRK13813 165 KII-SPGIGAQGGKASDAIKAGADYVIVGRSIYNAADPREAAKKIREEI 212 (215)
T ss_pred EEE-CCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 698-576167999989999818999998943358999999999999986
No 189
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.23 E-value=0.006 Score=39.68 Aligned_cols=137 Identities=14% Similarity=0.143 Sum_probs=80.7
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 0121000110454246788776555420-675526983033365322110000234321111224445565531268851
Q gi|254780434|r 133 TSPIGINLGANKDSKDFILDYVSGIRLF-FTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVP 211 (362)
Q Consensus 133 ~~pi~vsI~~~~~s~~~~~dy~~~~~~~-~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~P 211 (362)
+.||++-|= .. + .+|...+++.+ ..+...+|+-++.|+.. + .+..+++. .|
T Consensus 9 ~~plvaIlR-~~-~---~~~a~~~~~al~~~Gi~~iEVTl~tp~a~--------~----~I~~l~~~-----------~~ 60 (206)
T PRK09140 9 KLPLIAILR-GI-T---PDEALAHVGALIEAGFRAIEIPLNSPDPF--------D----SIAALVKA-----------LG 60 (206)
T ss_pred HCCEEEEEE-CC-C---HHHHHHHHHHHHHCCCCEEEEECCCCCHH--------H----HHHHHHHH-----------CC
T ss_conf 599799995-89-9---99999999999986998899917997699--------9----99999996-----------79
Q ss_pred --EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf --786505777748889999987644982999806655532345775446322113564542468999999974089748
Q gi|254780434|r 212 --IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIA 289 (362)
Q Consensus 212 --i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~ 289 (362)
+.+-..-=++ .+-++.+.++|++.++-=++ ..+.++..++. +++
T Consensus 61 ~~~~iGAGTVlt----~e~~~~ai~aGA~FiVSP~~---------------------------~~~vi~~a~~~---~i~ 106 (206)
T PRK09140 61 DDALIGAGTVLS----PEQVDRLADAGGRLIVTPNI---------------------------DPEVIRRAVAY---GMT 106 (206)
T ss_pred CCEEEEEEECCC----HHHHHHHHHCCCCEEECCCC---------------------------CHHHHHHHHHC---CCC
T ss_conf 865998620467----99999999859999999999---------------------------89999999982---996
Q ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 999678899999999998399975452787706978999999999
Q gi|254780434|r 290 IIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 290 IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
-.=|++|+.++...+.+||++|.++-+-.+ ||..++.+..-+
T Consensus 107 --~iPG~~TPsEi~~A~~~Ga~~vKlFPA~~~-Gp~~ikal~~p~ 148 (206)
T PRK09140 107 --VMPGVATPTEAFAALRAGADALKLFPASQL-GPAGIKALRAVL 148 (206)
T ss_pred --CCCCCCCHHHHHHHHHCCCCEEEECCHHCC-CHHHHHHHHCCC
T ss_conf --527859999999999859871565751105-999999986438
No 190
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=97.17 E-value=0.024 Score=35.56 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=48.8
Q ss_pred EEEEEC---CCCCCHHH-HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHH-HC
Q ss_conf 178650---57777488-899999876449829998066555323457754463221135645424689-9999997-40
Q gi|254780434|r 211 PIFLKI---SPDLSEEE-LDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTI-ALAKIRQ-RV 284 (362)
Q Consensus 211 Pi~vKL---sPd~~~~~-i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~-~i~~i~~-~~ 284 (362)
++.+|+ +..+++++ +...++.+.++|+|.|- | +.+ .++..-.+-+.+ +.+.+++ ..
T Consensus 132 ~~~LKVIlET~~L~~~e~I~~As~~a~~aGADFVK---T---------STG------k~~~gAT~e~v~~M~~aI~~~~~ 193 (258)
T PRK05283 132 NVLLKVIIETGELKDEALIRKASEIAIKAGADFIK---T---------STG------KVPVNATLEAARIMLEVIRDMGV 193 (258)
T ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEE---C---------CCC------CCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 84389997403478589999999999996979888---8---------999------89999799999999999998645
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 897489996788999999999983
Q gi|254780434|r 285 GPKIAIIGTGGISSTKDALDKIMA 308 (362)
Q Consensus 285 ~~~i~IIg~GGI~s~~Da~e~l~a 308 (362)
++++-+-.+|||.+.+||..|+..
T Consensus 194 G~~vGvKasGGIrt~~dA~~yl~L 217 (258)
T PRK05283 194 GKTVGFKPAGGVRTAEDAAQYLAL 217 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 886567625886899999999999
No 191
>pfam04131 NanE Putative N-acetylmannosamine-6-phosphate epimerase. This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilisation pathway found mainly in pathogenic bacteria.
Probab=97.16 E-value=0.0066 Score=39.37 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=77.7
Q ss_pred HCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 06755269830333653221100002343211112244455655312688517865057777488899999876449829
Q gi|254780434|r 160 FFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEG 239 (362)
Q Consensus 160 ~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dG 239 (362)
+..+||.+-+.-. + -.| |+.+.+++..+++. ..++++-.| + +++ +..+.+.|+|-
T Consensus 61 ~~aGadiIA~DaT--~--R~R----P~~~~~lv~~i~~~----------~~l~MAD~s---t---~ee-a~~A~~~G~D~ 115 (192)
T pfam04131 61 ANAGADIIALDGT--D--RPR----PVDIESFIKRIKEK----------GQLAMADCS---T---FEE-GLNAHKLGVDI 115 (192)
T ss_pred HHCCCCEEEEECC--C--CCC----CCCHHHHHHHHHHH----------CCEEEEECC---C---HHH-HHHHHHCCCCE
T ss_conf 9859999998467--8--989----75899999999981----------998899749---9---999-99999859999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf 99806655532345775446322113564542468999999974089748999678899999999998399975452787
Q gi|254780434|r 240 IIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAM 319 (362)
Q Consensus 240 iv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tal 319 (362)
|. ||.+ +..... .+ .+| -+++++++.+. ++|+|+=|+|.|++++.+.+.+||++|-|+||
T Consensus 116 I~---TTL~--GYT~~t----~~--~~p-----D~~ll~~l~~~---~~pvIaEGri~tPe~a~~a~~~GA~aVVVGsA- 175 (192)
T pfam04131 116 VG---TTLS--GYTGGS----NP--AEP-----DFQLVKTLSEA---GCFVIAEGRYNTPELAKKAIEIGADAVTVGSA- 175 (192)
T ss_pred EE---CCCC--CCCCCC----CC--CCC-----CHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEEECCC-
T ss_conf 98---2325--578999----99--999-----78999999868---99399857989999999999839989998965-
Q ss_pred HCCCHHHH-HHHHHHH
Q ss_conf 70697899-9999999
Q gi|254780434|r 320 IYEGISLP-KRIIQGL 334 (362)
Q Consensus 320 i~~Gp~~~-~~I~~~L 334 (362)
+-+ |..+ ++-.+.+
T Consensus 176 ITr-P~~IT~~F~~ai 190 (192)
T pfam04131 176 ITR-LEEITQWFIEAI 190 (192)
T ss_pred CCC-HHHHHHHHHHHH
T ss_conf 379-899999999997
No 192
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=97.16 E-value=0.0047 Score=40.37 Aligned_cols=90 Identities=21% Similarity=0.258 Sum_probs=63.9
Q ss_pred HHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
Q ss_conf 88999998764-49829998066555323457754463221135645424689999999740897489996788999999
Q gi|254780434|r 224 ELDDIAVEVLS-HKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDA 302 (362)
Q Consensus 224 ~i~~ia~~a~~-~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da 302 (362)
+..++|+.-.+ .|+.-|.+..- + |-..| .+.-+..|+++.+.+..++.| -|||.|-++|
T Consensus 29 ~P~~~A~~~~~~~GA~~iHvVDL----D-----------GA~~g---~~~N~~~i~~I~~~~~~~vQv--GGGIRs~e~v 88 (241)
T TIGR00007 29 DPVEAAKKWEEFQGAKRIHVVDL----D-----------GALEG---GPVNLEVIKKIVEELGVPVQV--GGGIRSLEDV 88 (241)
T ss_pred CHHHHHHHHHHCCCCCEEEEEEC----C-----------HHHCC---CCCHHHHHHHHHHHCCCCEEE--CCCCCCHHHH
T ss_conf 98999999984169715999845----1-----------00068---620078999999861851798--1751688999
Q ss_pred HHHHHCCCCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 99998399975452787706978999999999
Q gi|254780434|r 303 LDKIMAGANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 303 ~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
.+++.+|.+-|=++|+. ++-|.+++++.++.
T Consensus 89 ~~ll~~Gv~RVI~GT~A-~~~~~~v~~~~~~~ 119 (241)
T TIGR00007 89 EKLLDLGVDRVIIGTAA-VENPDLVKELLKEY 119 (241)
T ss_pred HHHHHCCCCEEEEEEEE-ECCHHHHHHHHHHH
T ss_conf 99997398579973322-10869999999984
No 193
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.15 E-value=0.0069 Score=39.27 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=24.4
Q ss_pred CCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf 5997485346888677988874036752410200136
Q gi|254780434|r 54 LSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPH 90 (362)
Q Consensus 54 ~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~ 90 (362)
+.-|+-++.|. ++.+.++.++++|+.-++++|.+.+
T Consensus 74 ~~~pi~vGGGI-rs~~~i~~~l~~Ga~kvvigs~~~~ 109 (240)
T PRK13585 74 TDVSIQLGGGI-RSVEDAASLLDLGVDRVILGTAAIE 109 (240)
T ss_pred CCCCEEEECCC-CCHHHHHHHHHCCCCEEEECCCCHH
T ss_conf 79778997885-8799999999769989993981131
No 194
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.15 E-value=0.026 Score=35.38 Aligned_cols=206 Identities=19% Similarity=0.235 Sum_probs=120.7
Q ss_pred ECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 53468886779888740367524102001368789988626884255541000024777778899987641000121000
Q gi|254780434|r 60 MAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGIN 139 (362)
Q Consensus 60 lAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vs 139 (362)
++|-+.+-.+.++.+.+.|..++-+ ..-|+-.+..++|. . .+++.+++...+.|+=+-
T Consensus 11 l~ad~~~L~~ei~~l~~~g~d~iHi------------------DImDG~FVpN~t~g---~-~~i~~ir~~~~~~plDvH 68 (223)
T PRK08745 11 LSADFARLGEEVDNVLKAGADWVHF------------------DVMDNHYVPNLTIG---P-MVCQALRKHGITAPIDVH 68 (223)
T ss_pred HHCCHHHHHHHHHHHHHCCCCEEEE------------------ECCCCCCCCCCCCC---H-HHHHHHHHHCCCCCEEEE
T ss_conf 5159999999999999769998998------------------27679707755709---5-999999961899753778
Q ss_pred EECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 11045424678877655542067552698303336532211000023432111122444556553126885178650577
Q gi|254780434|r 140 LGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPD 219 (362)
Q Consensus 140 I~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd 219 (362)
++.+. .+.|.+.+.+ .++|++.+-.-|.+ .+.+.+..+++. .+-..+-|.|+
T Consensus 69 LMv~~-----P~~~i~~~~~--aGad~i~~H~Ea~~-----------~~~~~i~~ik~~----------g~k~GlalnP~ 120 (223)
T PRK08745 69 LMVEP-----VDRIVPDFAD--AGATTISFHPEASR-----------HVHRTIQLIKSH----------GCQAGLVLNPA 120 (223)
T ss_pred EEECC-----HHHHHHHHHH--CCCCEEEEEECCCC-----------CHHHHHHHHHHC----------CCCEEEEECCC
T ss_conf 98339-----8999999997--39978999606442-----------999999999983----------98446774699
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCC
Q ss_conf 7748889999987644982999806655532345775446322113564542468999999974---0897489996788
Q gi|254780434|r 220 LSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQR---VGPKIAIIGTGGI 296 (362)
Q Consensus 220 ~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~---~~~~i~IIg~GGI 296 (362)
.+.+.+..++. -+|.|.+- ... . |.+|....+.++.-|+++|+. .+.++.|---|||
T Consensus 121 T~~~~l~~~l~-----~~D~VliM------------tV~--P-Gf~GQ~f~~~~l~KI~~l~~~~~~~~~~~~I~VDGGI 180 (223)
T PRK08745 121 TPVDILDWVLP-----ELDLVLVM------------SVN--P-GFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGV 180 (223)
T ss_pred CCHHHHHHHHH-----HCCEEEEE------------EEC--C-CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 98799999886-----47989998------------756--9-9887545688999999999999864999459997887
Q ss_pred CCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 999999999983999754527877069789999999999999
Q gi|254780434|r 297 SSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFL 338 (362)
Q Consensus 297 ~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l 338 (362)
.. +-+-+...+|||.+=.+|+ +|+.+. .++..+.|++..
T Consensus 181 ~~-~ti~~l~~aGad~~V~GSa-iF~~~d-~~~~i~~lr~~~ 219 (223)
T PRK08745 181 KA-DNIGAIAAAGADTFVAGSA-IFNAPD-YAQVIAQMRAAV 219 (223)
T ss_pred CH-HHHHHHHHCCCCEEEECHH-HHCCCC-HHHHHHHHHHHH
T ss_conf 98-9999999869999997417-757999-999999999999
No 195
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.11 E-value=0.0095 Score=38.32 Aligned_cols=192 Identities=19% Similarity=0.284 Sum_probs=97.3
Q ss_pred ECCEECCCCE-EE-CCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHH
Q ss_conf 8873359974-85-346888677988874036752410200136878998862688425554100002477777889998
Q gi|254780434|r 49 VAGISLSNPL-GM-AAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSR 126 (362)
Q Consensus 49 ~~Gl~~~nPi-gl-AaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~ 126 (362)
+.-+|-++|- |. ...+| -.+..+.+.+.|+.++.+=| + |.+|. |.-..++.
T Consensus 14 IaEiKr~SPS~G~i~~~~d-~~~~A~~Y~~~GA~aiSVLT---e-------~~~F~----------------Gs~~~L~~ 66 (217)
T cd00331 14 IAEVKRASPSKGLIREDFD-PVEIAKAYEKAGAAAISVLT---E-------PKYFQ----------------GSLEDLRA 66 (217)
T ss_pred EEEEECCCCCCCCCCCCCC-HHHHHHHHHHCCCCEEEEEC---C-------CCCCC----------------CCHHHHHH
T ss_conf 9762269999885678899-99999999977981899955---7-------77779----------------88999999
Q ss_pred HHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76410001210001104542467887765554206755269830333653221100002343211112244455655312
Q gi|254780434|r 127 LSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKT 206 (362)
Q Consensus 127 l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~ 206 (362)
+++. .+.|+-- .|.+.|-.+..+...-+||++-|-.++ .+++.+.+++......
T Consensus 67 v~~~-~~~PiLr--------KDFIid~~QI~ea~~~GAdaiLLI~~~---------L~~~~l~~l~~~a~~l-------- 120 (217)
T cd00331 67 VREA-VSLPVLR--------KDFIIDPYQIYEARAAGADAVLLIVAA---------LDDEQLKELYELAREL-------- 120 (217)
T ss_pred HHHH-CCCCEEE--------CCCCCCHHHHHHHHHCCCCCHHHHHHH---------CCHHHHHHHHHHHHHH--------
T ss_conf 9984-7998674--------232176999999998199878798885---------4999999999999994--------
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 68851786505777748889999987644982999806655532345775446322113564542468999999974089
Q gi|254780434|r 207 GKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGP 286 (362)
Q Consensus 207 ~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~ 286 (362)
..-++|-+. +.+++ +.+.+.+++ ++.+|. |+ +.. +...+..-.++.+.+++
T Consensus 121 --gl~~LvEvh---~~~El----~~a~~~~a~-iIGINn---Rd-L~t---------------~~vd~~~~~~L~~~ip~ 171 (217)
T cd00331 121 --GMEVLVEVH---DEEEL----ERALALGAK-IIGINN---RD-LKT---------------FEVDLNTTERLAPLIPK 171 (217)
T ss_pred --CCEEEEEEC---CHHHH----HHHHHCCCC-EEEECC---CC-CHH---------------CEECHHHHHHHHHHCCC
T ss_conf --982798858---99999----999957998-784216---77-123---------------03478999999964898
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 748999678899999999998399975452787706
Q gi|254780434|r 287 KIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYE 322 (362)
Q Consensus 287 ~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~ 322 (362)
+..+|+-+||.+.+|+..+..+|+++|-|+|++|..
T Consensus 172 ~~~~IsESGI~~~~di~~l~~~G~d~~LIG~sLm~~ 207 (217)
T cd00331 172 DVILVSESGISTPEDVKRLAEAGADAVLIGESLMRA 207 (217)
T ss_pred CCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHCC
T ss_conf 988998279999999999998799999989788679
No 196
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase; InterPro: IPR005994 Guanosine monophosphate reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides. A deep split separates two families of GMP reductase. This family is found in a variety of bacterial lineages. .
Probab=97.11 E-value=0.023 Score=35.76 Aligned_cols=215 Identities=17% Similarity=0.221 Sum_probs=114.7
Q ss_pred CCCCCCCEEEECCEECCCCEEECCCC-CCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCC
Q ss_conf 78896311688873359974853468-88677988874036752410200136878998862688425554100002477
Q gi|254780434|r 39 VHSDPRLNTKVAGISLSNPLGMAAGY-DKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNN 117 (362)
Q Consensus 39 ~~~~~~L~~~~~Gl~~~nPiglAaG~-dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N 117 (362)
.+++-|.++++...+|+=||+.|-=- --+-.....+.+-++=++ ++|+.++
T Consensus 18 srs~~dt~~~lG~~~fklPv~Panmqt~~~e~~a~~la~~~yfy~-----------------mhrf~~~----------- 69 (321)
T TIGR01306 18 SRSECDTSVRLGKKKFKLPVVPANMQTIIDEKLAKSLAENGYFYI-----------------MHRFDEE----------- 69 (321)
T ss_pred CCCCCCCEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEE-----------------EEECCCH-----------
T ss_conf 022444046665612101112236788888999999851695799-----------------9814701-----------
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 77788999876410001210001104542467887765554206755269830333653221100002343211112244
Q gi|254780434|r 118 AGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQ 197 (362)
Q Consensus 118 ~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~ 197 (362)
--..+.+++... +..-.+|+|.- +.--||+..+.+-.-.-.|+++.+.--| .+.+-+.+..++
T Consensus 70 -~r~~fik~m~~~--Gl~~sisvGvk----~~ey~f~~~l~~~~l~Pe~~tidiahGh---------~~~vi~mi~h~k- 132 (321)
T TIGR01306 70 -ARIPFIKDMQER--GLFASISVGVK----KAEYEFVEKLAEEKLIPEYITIDIAHGH---------SNSVIEMIKHIK- 132 (321)
T ss_pred -HHHHHHHHHHHC--CCEEEEEECCH----HHHHHHHHHHHHCCCCCCEEEEEEECCC---------HHHHHHHHHHHH-
T ss_conf -126899988747--85466520200----3568999998742678615788740363---------378999999998-
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-CCCCCCCCC--CCCCCCCCCCHHHH
Q ss_conf 455655312688517865057777488899999876449829998066555323-457754463--22113564542468
Q gi|254780434|r 198 TREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKG-VQCSDNHEQ--DGGLSGSPLFLKST 274 (362)
Q Consensus 198 ~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~-~~~~~~~~~--~GGlSG~~i~~~al 274 (362)
+++|=-.=++-|... ++-++.++.+|+|+--+.-. |+ ++....+.+ +||.- +
T Consensus 133 ----------~~~P~~fviaGnvGt---Pe~vrelenaGadatkvGiG----PG~vCitk~ktGfGtGGWq--------l 187 (321)
T TIGR01306 133 ----------THLPDSFVIAGNVGT---PEAVRELENAGADATKVGIG----PGKVCITKIKTGFGTGGWQ--------L 187 (321)
T ss_pred ----------HHCCCCEEEECCCCC---CHHHHHHHHCCCCCEEECCC----CCCEEEEEEECCCCCCHHH--------H
T ss_conf ----------748841687546788---25567665337641132247----8736898640255761589--------9
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC--CCHH
Q ss_conf 99999997408974899967889999999999839997545278770--6978
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY--EGIS 325 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~--~Gp~ 325 (362)
..+++..+.. +-|||+-|||.+--|..+-++-||+.|+++|-|.- +-|+
T Consensus 188 aal~~C~kaa--~kP~iadGGirthGdiaksirfGa~mvmiGslfa~h~esPG 238 (321)
T TIGR01306 188 AALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPG 238 (321)
T ss_pred HHHHHHHHHH--CCCEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCC
T ss_conf 9999988863--68703158523300344555531043123345420246875
No 197
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=97.11 E-value=0.0083 Score=38.74 Aligned_cols=56 Identities=27% Similarity=0.268 Sum_probs=27.2
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHH
Q ss_conf 89999999740897489996788999999999983999754527877069789999999
Q gi|254780434|r 274 TIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQ 332 (362)
Q Consensus 274 l~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~ 332 (362)
...++++.+.+ .+||.-.|||.|-+|+.+++.+||+-|-++|.. ++.|.+++++.+
T Consensus 62 ~~~i~~i~~~~--~~pi~vgGGIrs~e~~~~~l~~Ga~kvvigs~~-~~~~~~~~~~~~ 117 (229)
T pfam00977 62 LDLIEEIAEEV--FIPVQVGGGIRSLEDAERLLSAGADKVIIGTAA-VKNPELIKEAAE 117 (229)
T ss_pred HHHHHHHHHHC--CCCEEEECCEEEHHHHHHHHHCCCCEEEECCCH-HHCHHHHHHHHH
T ss_conf 99999999866--987899645611899999997699899958604-309378999999
No 198
>PRK07695 transcriptional regulator TenI; Provisional
Probab=97.09 E-value=0.0052 Score=40.06 Aligned_cols=93 Identities=22% Similarity=0.370 Sum_probs=61.8
Q ss_pred HHHHHHHHHHCCCCEEEEEC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
Q ss_conf 89999987644982999806--6555323457754463221135645424689999999740897489996788999999
Q gi|254780434|r 225 LDDIAVEVLSHKVEGIIVSN--TTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDA 302 (362)
Q Consensus 225 i~~ia~~a~~~g~dGiv~~N--T~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da 302 (362)
+.+ +..+.+.|+|=+.+.- .|...++ ..|..+..++++.+.+ ++|+++.|||.. +++
T Consensus 105 ~~e-~~~a~~~gaDYi~~Gpif~T~tK~~-----------------~~~~G~~~l~~~~~~~--~iPvvAIGGI~~-~ni 163 (202)
T PRK07695 105 LEE-AIQAEKNGADYVVYGHVFPTDCKKG-----------------VPARGLEELSEIARAL--SIPVIAIGGITP-ENT 163 (202)
T ss_pred HHH-HHHHHHCCCCEEEECCCCCCCCCCC-----------------CCCCCHHHHHHHHHHC--CCCEEEECCCCH-HHH
T ss_conf 999-9999776999699725412688889-----------------8878999999999867--999899869899-999
Q ss_pred HHHHHCCCCEEEECHHHHC-CCH-HHHHHHHHHHHHHH
Q ss_conf 9999839997545278770-697-89999999999999
Q gi|254780434|r 303 LDKIMAGANLIQLYSAMIY-EGI-SLPKRIIQGLSDFL 338 (362)
Q Consensus 303 ~e~l~aGAs~VQi~Tali~-~Gp-~~~~~I~~~L~~~l 338 (362)
-+.+.+||+-|-+.|+++- ..| ..++++++.+++|-
T Consensus 164 ~~v~~~Ga~giAvis~I~~a~dp~~~~~~l~~~i~~~~ 201 (202)
T PRK07695 164 RDVLAAGVSGIAVMSGIFSSSNPYSKAKRYKESIRKWA 201 (202)
T ss_pred HHHHHCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99998299999971897769999999999999999862
No 199
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.08 E-value=0.03 Score=34.97 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=38.0
Q ss_pred HHHHHHHHHCCCCEEEEEECCCC-CHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 99999997408974899967889-999999999839997545278770
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGIS-STKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~-s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
..++.++.-+ ++++++.+|||. |.+.+.+|+.+||.+|.++|.++-
T Consensus 148 ~~lkal~~p~-p~~~~~PtGGV~ps~~N~~~~l~ag~~~vG~GS~l~~ 194 (223)
T PRK07114 148 EFVKAIKGPM-PWTSIMPTGGVEPTEENLKSWFKAGATCVGMGSKLFP 194 (223)
T ss_pred HHHHHHHCCC-CCCCEEECCCCCCCHHHHHHHHHCCCEEEEECHHHCC
T ss_conf 9999984649-9996887999887355099999689979998846389
No 200
>PRK06857 consensus
Probab=97.07 E-value=0.0072 Score=39.13 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=37.0
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 99999997408974899967889999999999839997545278770
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
..++.++.-+ ++++++.+|||.- +++.+|+.+|+-++..+|.++-
T Consensus 141 ~~lkal~~p~-p~~~~~ptGGV~~-~N~~~yl~~~~v~~~gGS~l~~ 185 (209)
T PRK06857 141 NMLKALLAPY-PNLQIMPTGGINP-SNIKDYLAIPNVVACGGTWMVP 185 (209)
T ss_pred HHHHHHHCCC-CCCEEEECCCCCH-HHHHHHHCCCCEEEEECHHHCC
T ss_conf 9999986538-9980996489888-7899998599889998936589
No 201
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.0091 Score=38.43 Aligned_cols=63 Identities=22% Similarity=0.235 Sum_probs=40.8
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCH---HHHHHHHHHHHHHHHH
Q ss_conf 9999997408974899967889999999999839997545278770697---8999999999999998
Q gi|254780434|r 276 ALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGI---SLPKRIIQGLSDFLNK 340 (362)
Q Consensus 276 ~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp---~~~~~I~~~L~~~l~~ 340 (362)
+++.+..- -+++.++-+|||+. ..+.+|+.+|+.+|.++|.+.-++. +...+|.+-.+++++.
T Consensus 143 ~~ka~~gP-~~~v~~~pTGGVs~-~N~~~yla~gv~avG~Gs~l~~~~~~~~~~~~~i~~~a~~~~~~ 208 (211)
T COG0800 143 MLKALAGP-FPQVRFCPTGGVSL-DNAADYLAAGVVAVGLGSWLVPKDLIAAGDWDRITELAREAVAL 208 (211)
T ss_pred HHHHHCCC-CCCCEEEECCCCCH-HHHHHHHHCCCEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99987389-99985854698787-77999971780599547442673555314499999999999998
No 202
>KOG2550 consensus
Probab=97.07 E-value=0.0077 Score=38.93 Aligned_cols=127 Identities=14% Similarity=0.180 Sum_probs=68.0
Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-CHHHHHHHHHHHHHCCC
Q ss_conf 20675526983033365322110000234321111224445565531268851786505777-74888999998764498
Q gi|254780434|r 159 LFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDL-SEEELDDIAVEVLSHKV 237 (362)
Q Consensus 159 ~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~-~~~~i~~ia~~a~~~g~ 237 (362)
...+++|++.|.-|-=| ....-+.+.-+++ ...+..|+. -|. + .+-++.+..+|+
T Consensus 259 l~~aGvdvviLDSSqGn---------S~~qiemik~iK~--------~yP~l~Via---GNVVT----~~qa~nLI~aGa 314 (503)
T KOG2550 259 LVQAGVDVVILDSSQGN---------SIYQLEMIKYIKE--------TYPDLQIIA---GNVVT----KEQAANLIAAGA 314 (503)
T ss_pred HHHCCCCEEEEECCCCC---------CHHHHHHHHHHHH--------HCCCCEEEC---CCEEE----HHHHHHHHHCCC
T ss_conf 66348868999668885---------0457999999986--------688863431---65533----888999987367
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECH
Q ss_conf 29998066555323457754463221135645424689999999740897489996788999999999983999754527
Q gi|254780434|r 238 EGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYS 317 (362)
Q Consensus 238 dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~T 317 (362)
||+-+.=-.++ +++-...... |+| .-.+...+++..... .+|+|+-|||.+.-++.+.+.+|||.|++++
T Consensus 315 DgLrVGMGsGS---iCiTqevma~----Grp-Q~TAVy~va~~A~q~--gvpviADGGi~~~Ghi~KAl~lGAstVMmG~ 384 (503)
T KOG2550 315 DGLRVGMGSGS---ICITQKVMAC----GRP-QGTAVYKVAEFANQF--GVPCIADGGIQNVGHVVKALGLGASTVMMGG 384 (503)
T ss_pred CEEEECCCCCC---EEEECEEEEC----CCC-CCCCHHHHHHHHHHC--CCCEECCCCCCCCHHHHHHHHCCCHHHHCCC
T ss_conf 60575255675---0545301232----677-620032699999764--9965506875873177888753850631041
Q ss_pred HH
Q ss_conf 87
Q gi|254780434|r 318 AM 319 (362)
Q Consensus 318 al 319 (362)
-+
T Consensus 385 lL 386 (503)
T KOG2550 385 LL 386 (503)
T ss_pred HH
T ss_conf 10
No 203
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.03 E-value=0.021 Score=36.05 Aligned_cols=65 Identities=22% Similarity=0.270 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-CCHHHHHHHHHHHHHHHHH
Q ss_conf 4246899999997408974899967889999999999839997545278770-6978999999999999998
Q gi|254780434|r 270 FLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY-EGISLPKRIIQGLSDFLNK 340 (362)
Q Consensus 270 ~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~-~Gp~~~~~I~~~L~~~l~~ 340 (362)
.|..+..++++++.+ ++|+++.|||.. +.+-+.+.+||+-|-|.||++- +.|... .+.|.+.|.+
T Consensus 277 ~p~Gl~~l~~~~~~~--~iPvvAIGGI~~-~N~~~v~~aGa~gvAVisAI~~A~DP~~a---a~~ll~~l~~ 342 (345)
T PRK02615 277 APAGLEYLKYARKEA--NIPWFAIGGIDK-SNISEVLQAGADRVAVVRAIMNAEDPKQA---TQELLEQLSR 342 (345)
T ss_pred CCCCHHHHHHHHHHC--CCCEEEECCCCH-HHHHHHHHCCCCEEEEEHHHHCCCCHHHH---HHHHHHHHHC
T ss_conf 878999999999837--999999999699-99999998599999982285579999999---9999999730
No 204
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit; InterPro: IPR004651 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis. This family describes the histidine biosynthesis protein, HisF. ; GO: 0000107 imidazoleglycerol-phosphate synthase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm, 0009382 imidazoleglycerol-phosphate synthase complex.
Probab=97.03 E-value=0.0039 Score=40.95 Aligned_cols=92 Identities=17% Similarity=0.212 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH
Q ss_conf 88999998764498299980665553234577544632211356454246899999997408974899967889999999
Q gi|254780434|r 224 ELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDAL 303 (362)
Q Consensus 224 ~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~ 303 (362)
+..++|+.=.+-|||=+|--|=|-+.+ .+ .. +..-+.+|+++.+.+ -+|+-=.|||.+-+|+.
T Consensus 43 DPVeLA~~Y~~eGADELVFLDITAS~e---cP-l~-----------R~~m~~Vv~r~Ae~V--fiPlTVGGGI~~~eD~~ 105 (312)
T TIGR00735 43 DPVELAQRYDEEGADELVFLDITASSE---CP-LG-----------RETMIDVVERTAEKV--FIPLTVGGGIKSIEDVK 105 (312)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCCCC---CC-CC-----------CCCHHHHHHHHHHHC--CCCEEECCCCCCHHHCC
T ss_conf 823789998762895898514113666---78-88-----------801167888875214--52222168888432045
Q ss_pred -----------HHHHCCCCEEEECHHHHCCCHHHHHHHHHH
Q ss_conf -----------999839997545278770697899999999
Q gi|254780434|r 304 -----------DKIMAGANLIQLYSAMIYEGISLPKRIIQG 333 (362)
Q Consensus 304 -----------e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~ 333 (362)
.+|.||||=|-|-|+.++. |.++.+.-+-
T Consensus 106 GtkiPalevas~~L~aGADKvSiNTaAv~~-P~li~e~a~~ 145 (312)
T TIGR00735 106 GTKIPALEVASKLLRAGADKVSINTAAVKN-PELISEAADR 145 (312)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCHHHHC-CHHHHHHHHC
T ss_conf 644427899999985489846328467508-4478998732
No 205
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=97.02 E-value=0.034 Score=34.63 Aligned_cols=200 Identities=18% Similarity=0.227 Sum_probs=100.7
Q ss_pred CCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHC
Q ss_conf 59974853468886779888740367524102001368789988626884255541000024777778899987641000
Q gi|254780434|r 54 LSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPT 133 (362)
Q Consensus 54 ~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~ 133 (362)
+++|+.+|.=++..-+.++....+|--- .++.+ +--+ |.+.|.+ +++.|++. +
T Consensus 1 mk~~livAlD~~~~~~~~~l~~~l~~~i-----------------~~~Ki--g~~l-----~~~~G~~-~i~~l~~~--g 53 (231)
T PRK00230 1 MDDRLIVALDFPSKEEALAFLDQLDPAV-----------------LFVKV--GMEL-----FTAGGPQ-FVRELKQR--G 53 (231)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCC-----------------CEEEE--CHHH-----HHHCCHH-HHHHHHHC--C
T ss_conf 9998899964899999999999717755-----------------29998--9899-----8641899-99999977--9
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 12100011045424678877655542067-55269830333653221100002343211112244455655312688517
Q gi|254780434|r 134 SPIGINLGANKDSKDFILDYVSGIRLFFT-IASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPI 212 (362)
Q Consensus 134 ~pi~vsI~~~~~s~~~~~dy~~~~~~~~~-~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi 212 (362)
.+++.-. +..+-++.+.. .++.+.. .+|++.+..++- .+-+. +..+.... .....-+
T Consensus 54 ~~iFlDl-Kl~DIpnTv~~---~~~~i~~~g~d~vtvH~~~G----------~~~l~----a~~~~~~~----~~~~~kl 111 (231)
T PRK00230 54 FKVFLDL-KLHDIPNTVAK---AVRAAAKLGVDMVTVHASGG----------ARMMA----AAREGLEP----GGSRPLL 111 (231)
T ss_pred CCEEEEE-ECCCCCHHHHH---HHHHHHHCCCCEEEEECCCC----------HHHHH----HHHHHHHH----CCCCCEE
T ss_conf 9689872-02265458999---99999857998999825785----------99999----99998871----4898759
Q ss_pred E-E-ECCC------------CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 8-6-5057------------777488899999876449829998066555323457754463221135645424689999
Q gi|254780434|r 213 F-L-KISP------------DLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALA 278 (362)
Q Consensus 213 ~-v-KLsP------------d~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~ 278 (362)
+ | -|+. +...+.+..+++.+.++|+||++++- .-+.
T Consensus 112 l~Vt~LTS~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dGiVcs~------------------------------~e~~ 161 (231)
T PRK00230 112 IAVTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSA------------------------------QEAA 161 (231)
T ss_pred EEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEECCH------------------------------HHHH
T ss_conf 9999623689889986675789999999999999996998486388------------------------------8999
Q ss_pred HHHHHCCCCEEEEEECCCC-------------CHHHHHHHHHCCCCEEEECHHHHC-CCH-HHHHHHHHHHHH
Q ss_conf 9997408974899967889-------------999999999839997545278770-697-899999999999
Q gi|254780434|r 279 KIRQRVGPKIAIIGTGGIS-------------STKDALDKIMAGANLIQLYSAMIY-EGI-SLPKRIIQGLSD 336 (362)
Q Consensus 279 ~i~~~~~~~i~IIg~GGI~-------------s~~Da~e~l~aGAs~VQi~Tali~-~Gp-~~~~~I~~~L~~ 336 (362)
.+|+.+++++-++ +-||. |+++| +.+|||.+-|+.+..- +.| ..+++|.+++..
T Consensus 162 ~ir~~~~~~~~iv-TPGIr~~~~~~~DQ~rv~TP~~A---i~~GAD~iVVGR~I~~s~dP~~a~~~I~~ei~~ 230 (231)
T PRK00230 162 ALREATGPDFLLV-TPGIRPAGSDAGDQKRVMTPAQA---IAAGSDYIVVGRPITQAEDPAAALEAILAELAG 230 (231)
T ss_pred HHHHHCCCCCEEE-CCCCCCCCCCCCCCCCCCCHHHH---HHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 9986459871898-67727788875674656899999---987999999898456899999999999999855
No 206
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.02 E-value=0.0099 Score=38.21 Aligned_cols=192 Identities=20% Similarity=0.261 Sum_probs=86.7
Q ss_pred CCCC--HHHHHHHHHCCCC-EEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHH-HHCCCCCCE
Q ss_conf 8886--7798887403675-24102001368789988626884255541000024777778899987641-000121000
Q gi|254780434|r 64 YDKN--AEVPIELLKLGFG-FVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKI-QPTSPIGIN 139 (362)
Q Consensus 64 ~dk~--~~~~~~l~~~G~G-~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~-~~~~pi~vs 139 (362)
.|.. .+.++.+.+.|.- .++.|| |-+- |. + .-+....+.+...+. ....|+++.
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~Gt-tGE~------~~---L------------s~eEr~~v~~~~v~~~~grvpviaG 79 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGT-TGES------PT---L------------TLEERKEVLEAVVEAVGGRVPVIAG 79 (299)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCC-CCCC------HH---C------------CHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 39999999999999849988997986-6572------21---6------------9999999999999996897778986
Q ss_pred EECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC-
Q ss_conf 1104542467887765554206755269830333653221100002343211112244455655312688517865057-
Q gi|254780434|r 140 LGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISP- 218 (362)
Q Consensus 140 I~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsP- 218 (362)
++.|. +.+++ ++.+.+++++ +|++-+ -|..-.. -..+++.....++.+. ..+|+++==-|
T Consensus 80 ~g~~~-t~eai-~lak~a~~~G--ad~il~---v~PyY~k---~~~~gl~~hf~~ia~a---------~~lPvilYN~P~ 140 (299)
T COG0329 80 VGSNS-TAEAI-ELAKHAEKLG--ADGILV---VPPYYNK---PSQEGLYAHFKAIAEA---------VDLPVILYNIPS 140 (299)
T ss_pred CCCCC-HHHHH-HHHHHHHHCC--CCEEEE---ECCCCCC---CCHHHHHHHHHHHHHH---------CCCCEEEEECCC
T ss_conf 28777-99999-9999999709--999998---4897889---8979999999999985---------189989997875
Q ss_pred ----CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CEEEEEE
Q ss_conf ----77748889999987644982999806655532345775446322113564542468999999974089-7489996
Q gi|254780434|r 219 ----DLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGP-KIAIIGT 293 (362)
Q Consensus 219 ----d~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~-~i~IIg~ 293 (362)
|++.+.+..+++ --.+-||=- + . | .+..+..++...+. ++ ++.+
T Consensus 141 ~tg~~l~~e~i~~la~---~~nivgiKd--~---------------~----g------d~~~~~~~~~~~~~~~f-~v~~ 189 (299)
T COG0329 141 RTGVDLSPETIARLAE---HPNIVGVKD--S---------------S----G------DLDRLEEIIAALGDRDF-IVLS 189 (299)
T ss_pred CCCCCCCHHHHHHHHC---CCCEEEEEE--C---------------C----C------CHHHHHHHHHHCCCCCE-EEEE
T ss_conf 2489999999999827---898899984--7---------------8----8------99999999986487662-8982
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHH
Q ss_conf 788999999999983999754527877069789999999
Q gi|254780434|r 294 GGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQ 332 (362)
Q Consensus 294 GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~ 332 (362)
| ..+.++..+.+||+-+-..++-+. |....++.+
T Consensus 190 G---~d~~~~~~~~~G~~G~is~~~N~~--p~~~~~l~~ 223 (299)
T COG0329 190 G---DDELALPALLLGADGVISVTANVA--PELAVELYR 223 (299)
T ss_pred C---CHHHHHHHHHCCCCEEEECCCHHC--HHHHHHHHH
T ss_conf 6---658888998677985884100127--999999999
No 207
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.01 E-value=0.012 Score=37.70 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=62.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 99999876449829998066555323457754463221135645424689999999740897489996788999999999
Q gi|254780434|r 226 DDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDK 305 (362)
Q Consensus 226 ~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~ 305 (362)
.+.+..+.+.|+|=|... .. ... .+ +.-.+..+..+++.++.. ++|+++.|||. .+.+.+.
T Consensus 121 ~~~A~~A~e~GADYv~fG-~~------~~~-~k--------~~a~~~~l~~l~~~~~~~--~iP~VAIGGIt-~~n~~~v 181 (221)
T PRK06512 121 RHGAMEVGELQPDYLFFG-KL------GAD-NK--------PEAHPRNLSLAEWWAEMI--EIPCIVQAGSD-LASIVEV 181 (221)
T ss_pred HHHHHHHHHCCCCEEEEC-CC------CCC-CC--------CCCCCCCHHHHHHHHHCC--CCCEEEECCCC-HHHHHHH
T ss_conf 999999997399857657-87------888-89--------988754258999999747--99989982789-9999999
Q ss_pred HHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 983999754527877069789999999999999983
Q gi|254780434|r 306 IMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKE 341 (362)
Q Consensus 306 l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~ 341 (362)
+.+|||.|-+.|+++ ..+. ...-.++|.++|++.
T Consensus 182 ~~aGad~vAVisaI~-~a~D-p~~A~~~l~~llde~ 215 (221)
T PRK06512 182 AETGAEFVALGRAVF-DAHD-PPLAVAEANALLDEK 215 (221)
T ss_pred HHHCCCEEEEHHHHH-CCCC-HHHHHHHHHHHHHCC
T ss_conf 981998998859960-8999-999999999987332
No 208
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=97.00 E-value=0.01 Score=38.09 Aligned_cols=193 Identities=16% Similarity=0.210 Sum_probs=106.1
Q ss_pred EECCEECCCCEE--ECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHH
Q ss_conf 888733599748--534688867798887403675241020013687899886268842555410000247777788999
Q gi|254780434|r 48 KVAGISLSNPLG--MAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFS 125 (362)
Q Consensus 48 ~~~Gl~~~nPig--lAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~ 125 (362)
=++-++-++|-. +...+|. .+..+.+.+.|+.++.+=| + |++|. |.-..++
T Consensus 52 iIAEiKraSPS~G~i~~~~dp-~~~A~~Y~~~GA~aiSVLT---e-------~~~F~----------------Gs~~~L~ 104 (261)
T PRK00278 52 VIAEVKKASPSKGVIREDFDP-VEIAKAYEEGGAACLSVLT---D-------ERFFQ----------------GSFEYLR 104 (261)
T ss_pred EEEEECCCCCCCCCCCCCCCH-HHHHHHHHHCCCCEEEEEE---C-------CCCCC----------------CCHHHHH
T ss_conf 995545789999986887999-9999999977996899951---3-------03248----------------8799999
Q ss_pred HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87641000121000110454246788776555420675526983033365322110000234321111224445565531
Q gi|254780434|r 126 RLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIK 205 (362)
Q Consensus 126 ~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~ 205 (362)
..++. .+.|+-- .|.+.|-.+..+...-+||++=|=.++ -+++.+.+++......
T Consensus 105 ~vr~~-~~lPiLr--------KDFIid~~QI~ea~~~GADaiLLI~~~---------L~~~~l~~l~~~a~~l------- 159 (261)
T PRK00278 105 AARAA-VSLPVLR--------KDFIIDPYQIYEARAAGADAILLIVAA---------LDDEQLKELLDLAHEL------- 159 (261)
T ss_pred HHHHH-CCCCEEE--------EHEECCHHHHHHHHHCCCCCHHHHHHH---------CCHHHHHHHHHHHHHH-------
T ss_conf 99986-6998772--------010176999999998189857898875---------5899999999999982-------
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 26885178650577774888999998764498299980665553234577544632211356454246899999997408
Q gi|254780434|r 206 TGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVG 285 (362)
Q Consensus 206 ~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~ 285 (362)
..-++|-+. +. .+ ++.+.+.+++ ++.+|. |+ +.+ +...+..-.++...++
T Consensus 160 ---gl~~LvEvh---~~---~E-l~~a~~~~a~-iIGINn---Rn-L~t---------------~~vd~~~~~~L~~~ip 209 (261)
T PRK00278 160 ---GLDVLVEVH---DE---EE-LERALKLGAP-LIGINN---RN-LKT---------------FEVDLDTTERLAPLIP 209 (261)
T ss_pred ---CCEEEEEEC---CH---HH-HHHHHHCCCC-EEEEEC---CC-CHH---------------CEECHHHHHHHHHHCC
T ss_conf ---990797768---99---99-9999847998-898746---77-112---------------0037899999996489
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 9748999678899999999998399975452787706
Q gi|254780434|r 286 PKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYE 322 (362)
Q Consensus 286 ~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~ 322 (362)
.+..+|+-.||.+.+|+..+..+|+++|-|++++|-.
T Consensus 210 ~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~ 246 (261)
T PRK00278 210 KDRLLVSESGIFTPEDLKRLAKAGADAFLVGESLMRA 246 (261)
T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHCC
T ss_conf 9988997999999999999997799999989787679
No 209
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=96.97 E-value=0.012 Score=37.70 Aligned_cols=34 Identities=32% Similarity=0.411 Sum_probs=19.6
Q ss_pred CCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 99748534688867798887403675241020013
Q gi|254780434|r 55 SNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTP 89 (362)
Q Consensus 55 ~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~ 89 (362)
.-|+-++.|. ++.+.++.+.++|+--++++|.+.
T Consensus 73 ~~pi~vGGGI-rs~~~~~~l~~~Ga~kvvi~s~~~ 106 (234)
T cd04732 73 GIPVQVGGGI-RSLEDIERLLDLGVSRVIIGTAAV 106 (234)
T ss_pred CCCEEECCCC-CCHHHHHHHHHCCCCEEEECCCHH
T ss_conf 9568973771-759999999864887189714011
No 210
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=96.97 E-value=0.012 Score=37.69 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=20.1
Q ss_pred HCCCH--HHHHHHHHHHHHHHHHCCCCCHHHHHC
Q ss_conf 70697--899999999999999838997789616
Q gi|254780434|r 320 IYEGI--SLPKRIIQGLSDFLNKENEVNFENIRG 351 (362)
Q Consensus 320 i~~Gp--~~~~~I~~~L~~~l~~~G~~si~e~iG 351 (362)
-|+|+ .++..+..+|+.-|.--|-+||+|+.-
T Consensus 347 p~~G~v~~~~~~l~gglrs~m~y~Ga~~i~el~~ 380 (404)
T PRK06843 347 PYSGKLKDILTQLKGGLMSGMGYLGAATISDLKI 380 (404)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 7888889999999989987062857775999974
No 211
>TIGR00674 dapA dihydrodipicolinate synthase; InterPro: IPR005263 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta-semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue . Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC, IPR005264 from INTERPRO) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Sinorhizobium meliloti protein mosA , which is involved in the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry . Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel. This family represents a subclass of dihydrodipicolinate synthase. ; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process.
Probab=96.92 E-value=0.009 Score=38.48 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHCC-CCEEEEEECCCCCHHHH--HHHHHCCCCEEEECHHHHCCCHHHHHHHH
Q ss_conf 6899999997408-97489996788999999--99998399975452787706978999999
Q gi|254780434|r 273 STIALAKIRQRVG-PKIAIIGTGGISSTKDA--LDKIMAGANLIQLYSAMIYEGISLPKRII 331 (362)
Q Consensus 273 al~~i~~i~~~~~-~~i~IIg~GGI~s~~Da--~e~l~aGAs~VQi~Tali~~Gp~~~~~I~ 331 (362)
++..+.++++..+ +++.| .||+|+ .+++..||.=|=--++-+. |..+++++
T Consensus 164 ~l~~~~~i~~~~p~~dF~v------lsGDD~l~l~~~~~Gg~GVISV~~N~~--P~~~~emv 217 (288)
T TIGR00674 164 NLERISEIKAITPDDDFVV------LSGDDALTLPILALGGKGVISVTSNVA--PKLMKEMV 217 (288)
T ss_pred CHHHHHHHHHHCCCCCEEE------EECCCCHHHHHHHHCCCEEEEHHHHHH--HHHHHHHH
T ss_conf 8899999998668985388------847861136999818961673005556--89999999
No 212
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.92 E-value=0.01 Score=38.08 Aligned_cols=83 Identities=23% Similarity=0.292 Sum_probs=59.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 88517865057777488899999876449829998066555323457754463221135645424689999999740897
Q gi|254780434|r 208 KFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPK 287 (362)
Q Consensus 208 ~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~ 287 (362)
.++-+.+-++. .++..+.++.+.++|+|-|++- | ... -| ...+++++++++.+ ++
T Consensus 225 grL~VgAAVg~---~~~~~eRa~~Lv~aGvDvlvID-t---------AhG------hs-----~~v~~~ik~ik~~~-p~ 279 (499)
T PTZ00314 225 KQLLVGAAIST---REEDKERAAALIDAGVDVLVLD-S---------SQG------NS-----IYQIDFIKWIKSTY-PH 279 (499)
T ss_pred CCEEEEEEECC---CCCHHHHHHHHHHCCCCEEEEE-C---------CCC------CC-----HHHHHHHHHHHHHC-CC
T ss_conf 87899999478---8048999999998699899981-6---------887------72-----78999999988527-98
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 48999678899999999998399975452
Q gi|254780434|r 288 IAIIGTGGISSTKDALDKIMAGANLIQLY 316 (362)
Q Consensus 288 i~IIg~GGI~s~~Da~e~l~aGAs~VQi~ 316 (362)
++|| +|.|.|++-+.+.+.||||.|-|+
T Consensus 280 v~vI-aGNVaT~~~a~~Li~aGAD~vkVG 307 (499)
T PTZ00314 280 LEVI-AGNVVTQDQAKNLIDAGADGIRIG 307 (499)
T ss_pred CCEE-EEEECHHHHHHHHHHCCCCEEEEC
T ss_conf 8467-643310999999997499879975
No 213
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=96.90 E-value=0.012 Score=37.72 Aligned_cols=79 Identities=15% Similarity=0.235 Sum_probs=56.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78650577774888999998764498299980665553234577544632211356454246899999997408974899
Q gi|254780434|r 212 IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAII 291 (362)
Q Consensus 212 i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~II 291 (362)
+.+-+++ .++..+.++.+.++|+|-|++ .| ... .| ...++.|+++++.++ +++||
T Consensus 214 VgAAVG~---~~~~~eRa~~Lv~aGvDvivI-Dt---------AhG------hs-----~~vi~~ik~ik~~~p-~~~iI 268 (467)
T pfam00478 214 VGAAVGT---RDDDLERAEALVEAGVDVIVI-DS---------AHG------HS-----EYVLEMIKWIKKKYP-DLDVI 268 (467)
T ss_pred EEEEECC---CHHHHHHHHHHHHCCCCEEEE-EC---------CCC------CC-----HHHHHHHHHHHHCCC-CCCEE
T ss_conf 9998067---865999999998769988997-34---------454------41-----889999999874078-77378
Q ss_pred EECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 9678899999999998399975452
Q gi|254780434|r 292 GTGGISSTKDALDKIMAGANLIQLY 316 (362)
Q Consensus 292 g~GGI~s~~Da~e~l~aGAs~VQi~ 316 (362)
.|.|-|++.+.+.+.||||.|-|+
T Consensus 269 -aGNVaT~e~a~~Li~aGAD~vKVG 292 (467)
T pfam00478 269 -AGNVVTAEAARELIDAGADAVKVG 292 (467)
T ss_pred -EEEECCHHHHHHHHHHCCCEEEEC
T ss_conf -510058999999997077757755
No 214
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=96.89 E-value=0.043 Score=33.88 Aligned_cols=210 Identities=21% Similarity=0.303 Sum_probs=123.1
Q ss_pred CEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 74853468886779888740367524102001368789988626884255541000024777778899987641000121
Q gi|254780434|r 57 PLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPI 136 (362)
Q Consensus 57 PiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi 136 (362)
|=+++|-+.+-.+.++++.+.|+.++-+ ..-|+-.+..++| |. .+++.+++...+.|+
T Consensus 4 pSil~ad~~~L~~ei~~l~~~g~d~lHi------------------DIMDG~FVPNitf---g~-~~v~~ir~~~t~~~~ 61 (220)
T PRK08883 4 PSILSADFARLGEDVEKVLAAGADVVHF------------------DVMDNHYVPNLTF---GA-PICKALRDYGITAPI 61 (220)
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCEEEE------------------ECCCCCCCCCCCC---CH-HHHHHHHHHCCCCCE
T ss_conf 7764329999999999999769998998------------------1778985886566---98-999999965899875
Q ss_pred CCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 00011045424678877655542067552698303336532211000023432111122444556553126885178650
Q gi|254780434|r 137 GINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKI 216 (362)
Q Consensus 137 ~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKL 216 (362)
=+-++.+. -+..+++|. ..++|.+.+-+-+ .+...+.+..+++. . +-..+-|
T Consensus 62 DvHLMv~~-P~~~i~~~~------~aGad~I~~H~Ea-----------~~~~~~~i~~Ik~~--------g--~k~Glal 113 (220)
T PRK08883 62 DVHLMVKP-VDRIIPDFA------KAGASMITFHVEA-----------SEHVDRTLQLIKEH--------G--CQAGVVL 113 (220)
T ss_pred EEEEEECC-HHHHHHHHH------HCCCCEEEECCCC-----------CCCHHHHHHHHHHC--------C--CCEEEEE
T ss_conf 78998338-888899999------7599889985776-----------54999999999985--------9--9668884
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCCEEEEEE
Q ss_conf 57777488899999876449829998066555323457754463221135645424689999999740---897489996
Q gi|254780434|r 217 SPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRV---GPKIAIIGT 293 (362)
Q Consensus 217 sPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~---~~~i~IIg~ 293 (362)
.|+.+.+.+..++.. +|.+.+- | .. -|.+|....|.++..|+++|+.. +.++.|---
T Consensus 114 nP~T~~~~l~~~l~~-----~D~VLvM-t-----------V~---PGf~GQ~f~~~~l~Ki~~l~~~~~~~~~~~~I~VD 173 (220)
T PRK08883 114 NPATPLAHLEYIMDK-----VDLILLM-S-----------VN---PGFGGQSFIPHTLDKLRAVRKMIDASGRDIRLEID 173 (220)
T ss_pred CCCCCHHHHHHHHHH-----CCEEEEE-E-----------EC---CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 799987999999974-----6979998-7-----------45---89887545577999999999988744998079998
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 7889999999999839997545278770697899999999999999
Q gi|254780434|r 294 GGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLN 339 (362)
Q Consensus 294 GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~ 339 (362)
|||.. +-+-+...+|||.+=.+|+ +|+.+. .++..+.|++-+.
T Consensus 174 GGI~~-~ti~~l~~aGad~~V~GS~-iF~~~d-~~~~i~~lr~~~~ 216 (220)
T PRK08883 174 GGVKV-DNIREIAEAGADMFVAGSA-IFGQPD-YKAVIDEMRAELA 216 (220)
T ss_pred CCCCH-HHHHHHHHCCCCEEEECHH-HHCCCC-HHHHHHHHHHHHH
T ss_conf 98789-9999999879999996826-748999-9999999999999
No 215
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=96.89 E-value=0.016 Score=36.75 Aligned_cols=113 Identities=10% Similarity=0.028 Sum_probs=52.8
Q ss_pred CHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHH-HHHCCCCCCEEECCCC
Q ss_conf 677988874036752410200136878998862688425554100002477777889998764-1000121000110454
Q gi|254780434|r 67 NAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSK-IQPTSPIGINLGANKD 145 (362)
Q Consensus 67 ~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~-~~~~~pi~vsI~~~~~ 145 (362)
-.+.++.+.+.|..++++-.-|-+-.. |..+....+.+...+ .....|+++.++.+.
T Consensus 31 l~~lv~~li~~Gv~gl~~~GttGE~~~---------------------Ls~~Er~~v~~~~~e~~~gr~pvi~G~~~~~- 88 (309)
T cd00952 31 TARLVERLIAAGVDGILTMGTFGECAT---------------------LTWEEKQAFVATVVETVAGRVPVFVGATTLN- 88 (309)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHH---------------------CCHHHHHHHHHHHHHHHCCCCEEEECCCCCH-
T ss_conf 999999999769998997923500434---------------------8799999999999998389850996057505-
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 2467887765554206755269830333653221100002343211112244455655312688517865057
Q gi|254780434|r 146 SKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISP 218 (362)
Q Consensus 146 s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsP 218 (362)
+.+.+ +..+.++++ +||++-+ .+|..-. .+.+.+.....++.+. ...+||++==-|
T Consensus 89 t~~ai-~~a~~a~~~--Gad~~lv--~~P~y~~----~~~~~l~~~~~~ia~a--------~~~lPiilYn~P 144 (309)
T cd00952 89 TRDTI-ARTRALLDL--GADGTML--GRPMWLP----LDVDTAVQFYRDVAEA--------VPEMAIAIYANP 144 (309)
T ss_pred HHHHH-HHHHHHHHC--CCCEEEE--CCCCCCC----CCHHHHHHHHHHHHHH--------CCCCCEEEEECC
T ss_conf 99999-999999846--9899998--8885889----9999999999999986--------789988999686
No 216
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=96.88 E-value=0.044 Score=33.85 Aligned_cols=200 Identities=19% Similarity=0.288 Sum_probs=119.2
Q ss_pred CEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCC--CCHHHHHHHHHHHHHCC
Q ss_conf 7485346888677988874036752410200136878998862688425554100002477--77788999876410001
Q gi|254780434|r 57 PLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNN--AGYHTVFSRLSKIQPTS 134 (362)
Q Consensus 57 PiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N--~G~~~~~~~l~~~~~~~ 134 (362)
|=+|||=|-+=+|.+++..++|+-++=+==- .|+ .+ || -|.. +++.|++...+.
T Consensus 4 PSILsADf~rLgee~~~v~~AGaD~iH~DVM-----DGH-------------FV-----PNlT~Gp~-v~~~~r~~g~~~ 59 (216)
T TIGR01163 4 PSILSADFARLGEEVKAVEEAGADLIHVDVM-----DGH-------------FV-----PNLTFGPP-VLEALRKYGTKL 59 (216)
T ss_pred CHHHHCCHHHHHHHHHHHHHCCCCEEEEEEC-----CCC-------------CC-----CCCCCCHH-HHHHHHHHCCCC
T ss_conf 1255504777999999999669978998624-----797-------------17-----71002778-999887407952
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 21000110454246788776555420675526983033365322110000234321111224445565531268851786
Q gi|254780434|r 135 PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFL 214 (362)
Q Consensus 135 pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~v 214 (362)
|+=|=+|-.. .++|.+.+-+. +||++.+=+ .+...+.++|+.+++. .-+| .+
T Consensus 60 P~DVHLMv~~-----pd~~~~~Fa~a--GA~~I~vH~-----------Ea~~h~~R~l~~Ik~~---------G~~A-G~ 111 (216)
T TIGR01163 60 PIDVHLMVEN-----PDRYIEDFAEA--GADIITVHA-----------EATEHIHRLLQLIKEL---------GAKA-GI 111 (216)
T ss_pred CEEEEECCCC-----HHHHHHHHHHH--CCCEEEEEC-----------CCCCCHHHHHHHHHHC---------CCCE-EE
T ss_conf 1266303578-----57778899970--899899843-----------7762679999999971---------8970-68
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-----CCCEE
Q ss_conf 5057777488899999876449829998066555323457754463221135645424689999999740-----89748
Q gi|254780434|r 215 KISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRV-----GPKIA 289 (362)
Q Consensus 215 KLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~-----~~~i~ 289 (362)
=+.|.++.+-+..+... +|.|-+ ....++ .||.-=-|.+++-|+++|+.. +.++.
T Consensus 112 v~NP~TPl~~~~~~L~~-----~D~VLl------------MSVnPG---FgGQkFIP~~~~Kir~~R~~id~~~~~~~~~ 171 (216)
T TIGR01163 112 VLNPATPLEALEYVLED-----VDLVLL------------MSVNPG---FGGQKFIPETLEKIRELRKMIDKLELGLSIL 171 (216)
T ss_pred EECCCCCHHHHHHHHHH-----CCEEEE------------EEEECC---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 86799998789989876-----298998------------876079---9884110578999999999998602799558
Q ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCH--HHHHHH
Q ss_conf 99967889999999999839997545278770697--899999
Q gi|254780434|r 290 IIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGI--SLPKRI 330 (362)
Q Consensus 290 IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp--~~~~~I 330 (362)
|===|||.. +-+.+--.||||.+=.+|+ +|+.+ ..-..|
T Consensus 172 ieVDGGv~~-~ni~~~~~AGAD~~VaGSa-iF~~~s~d~~~~i 212 (216)
T TIGR01163 172 IEVDGGVNE-DNIAEVAEAGADILVAGSA-IFGADSLDYKEAI 212 (216)
T ss_pred EEECCCCCH-HHHHHHHHCCCCEEEEEEE-EECCCCCCHHHHH
T ss_conf 997179897-6799999758989998310-2088866879999
No 217
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.045 Score=33.77 Aligned_cols=207 Identities=19% Similarity=0.256 Sum_probs=120.0
Q ss_pred CCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 97485346888677988874036752410200136878998862688425554100002477777889998764100012
Q gi|254780434|r 56 NPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSP 135 (362)
Q Consensus 56 nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~p 135 (362)
.|=.+||-+.+-++.++++.+.|...+-+- .-|+-.++.+.| |.+ +++.+++ ..+.|
T Consensus 7 apSILsaD~~~l~~el~~~~~agad~iH~D------------------VMDghFVPNiTf---Gp~-~v~~l~~-~t~~p 63 (220)
T COG0036 7 APSILSADFARLGEELKALEAAGADLIHID------------------VMDGHFVPNITF---GPP-VVKALRK-ITDLP 63 (220)
T ss_pred EEEHHHCCHHHHHHHHHHHHHCCCCEEEEE------------------CCCCCCCCCCCC---CHH-HHHHHHH-CCCCC
T ss_conf 415642777679999999997699879996------------------457876787334---899-9998863-68973
Q ss_pred CCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 10001104542467887765554206755269830333653221100002343211112244455655312688517865
Q gi|254780434|r 136 IGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK 215 (362)
Q Consensus 136 i~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK 215 (362)
+-|-++... .++|.+.+-+. +||++.+-.- +...+.+.++.+++. .+-..+-
T Consensus 64 ~DvHLMV~~-----p~~~i~~fa~a--gad~It~H~E-----------~~~~~~r~i~~Ik~~----------G~kaGv~ 115 (220)
T COG0036 64 LDVHLMVEN-----PDRYIEAFAKA--GADIITFHAE-----------ATEHIHRTIQLIKEL----------GVKAGLV 115 (220)
T ss_pred EEEEEECCC-----HHHHHHHHHHH--CCCEEEEEEC-----------CCCCHHHHHHHHHHC----------CCEEEEE
T ss_conf 589973289-----89999999981--9998999712-----------776899999999975----------9857799
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--CEEEEEE
Q ss_conf 05777748889999987644982999806655532345775446322113564542468999999974089--7489996
Q gi|254780434|r 216 ISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGP--KIAIIGT 293 (362)
Q Consensus 216 LsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~--~i~IIg~ 293 (362)
|-|..+.+.+..++.. +|-+.+ ....+ |.+|..-.|-++..|+++|+.... ++.|---
T Consensus 116 lnP~Tp~~~i~~~l~~-----vD~Vll------------MsVnP---GfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVD 175 (220)
T COG0036 116 LNPATPLEALEPVLDD-----VDLVLL------------MSVNP---GFGGQKFIPEVLEKIRELRAMIDERLDILIEVD 175 (220)
T ss_pred ECCCCCHHHHHHHHHH-----CCEEEE------------EEECC---CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 7899977899989865-----789999------------85779---986631479999999999997402477599996
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHH
Q ss_conf 7889999999999839997545278770697899999999999
Q gi|254780434|r 294 GGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSD 336 (362)
Q Consensus 294 GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~ 336 (362)
|||. .+-+-+...||||.+=.+|+ +|++.... .-.+.+..
T Consensus 176 GGI~-~~t~~~~~~AGad~~VaGSa-lF~~~d~~-~~i~~~~~ 215 (220)
T COG0036 176 GGIN-LETIKQLAAAGADVFVAGSA-LFGADDYK-ATIRELRG 215 (220)
T ss_pred CCCC-HHHHHHHHHCCCCEEEEEEE-EECCCCHH-HHHHHHHH
T ss_conf 8969-88899999739999999777-86781199-99999998
No 218
>pfam00701 DHDPS Dihydrodipicolinate synthetase family. This family has a TIM barrel structure.
Probab=96.82 E-value=0.018 Score=36.44 Aligned_cols=187 Identities=17% Similarity=0.234 Sum_probs=91.2
Q ss_pred HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHH-HHHHCCCCCCEEECCCCC
Q ss_conf 7798887403675241020013687899886268842555410000247777788999876-410001210001104542
Q gi|254780434|r 68 AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLS-KIQPTSPIGINLGANKDS 146 (362)
Q Consensus 68 ~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~-~~~~~~pi~vsI~~~~~s 146 (362)
...++.+.+.|.-++++..-|-+- +.+ .......+++... ....+.||++.++.+. +
T Consensus 25 ~~~i~~l~~~Gv~gi~v~GstGE~---------~~L------------s~~Er~~v~~~~~~~~~~~~pvi~gv~~~s-t 82 (289)
T pfam00701 25 RKLIEFLINKGADGLFVGGTTGES---------FTL------------STEEHEQLIEITVDEAKGRIPVIAGTGSNS-T 82 (289)
T ss_pred HHHHHHHHHCCCCEEEECEECCCC---------CCC------------CHHHHHHHHHHHHHHCCCCCEEEECCCCCC-H
T ss_conf 999999997799999978364031---------138------------899999999999998199862863788878-9
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-----C
Q ss_conf 46788776555420675526983033365322110000234321111224445565531268851786505777-----7
Q gi|254780434|r 147 KDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDL-----S 221 (362)
Q Consensus 147 ~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~-----~ 221 (362)
.+. .++.+.++++ ++|++-+ ..|.... .+.+.+.+....+.+ .+.+||++=--|.. +
T Consensus 83 ~~~-i~~a~~A~~~--Gad~i~v--~pP~y~~----~~~~~i~~~~~~va~---------a~~lPi~iYn~P~~tg~~l~ 144 (289)
T pfam00701 83 REA-IHLAQLAEAA--GADGVLA--VTPYYNK----PSQEGLYQHFKAIAA---------ATDLPVILYNVPSRTGQDLT 144 (289)
T ss_pred HHH-HHHHHHHHHC--CCCEEEE--CCCCCCC----CCHHHHHHHHHHHHH---------CCCCCEEEEECCCCCCCCCC
T ss_conf 999-9999999974--9997887--7998889----999999999999983---------15997799715654033679
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHH
Q ss_conf 48889999987644982999806-65553234577544632211356454246899999997408974899967889999
Q gi|254780434|r 222 EEELDDIAVEVLSHKVEGIIVSN-TTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTK 300 (362)
Q Consensus 222 ~~~i~~ia~~a~~~g~dGiv~~N-T~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~ 300 (362)
.+.+.+++ + ...|+.+- ++ | ....+.++++..++++.+.. | ...
T Consensus 145 ~~~l~~L~----~--~~~i~giK~ss-------------------~------~~~~~~~~~~~~~~~~~v~~-G---~d~ 189 (289)
T pfam00701 145 PETIERLA----E--CPNVVGVKDAV-------------------G------DLERMENIRKRAGPDFTILS-G---DDE 189 (289)
T ss_pred HHHHHHHH----C--CCCEEEEEECC-------------------C------CHHHHHHHHHHCCCCCEEEC-C---CHH
T ss_conf 99999982----6--89989999699-------------------8------99999999996699824506-9---489
Q ss_pred HHHHHHHCCCCEEEECHHHHCCCHHHHHHHH
Q ss_conf 9999998399975452787706978999999
Q gi|254780434|r 301 DALDKIMAGANLIQLYSAMIYEGISLPKRII 331 (362)
Q Consensus 301 Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~ 331 (362)
-.++.+.+||+-...+++.++ |..+.+|.
T Consensus 190 ~~~~~l~~Ga~G~i~~~~n~~--P~~~~~i~ 218 (289)
T pfam00701 190 TALSYLSLGADGVISVTSNIA--PKLMRDIY 218 (289)
T ss_pred HHHHHHHCCCCEEEEEHHHHC--HHHHHHHH
T ss_conf 999998668987998415405--99999999
No 219
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase; InterPro: IPR010946 This entry represents geranylgeranylglyceryl phosphate synthase which catalyses the first committed step in the synthesis of ether-linked membrane lipids in archaea ..
Probab=96.79 E-value=0.0027 Score=42.05 Aligned_cols=47 Identities=32% Similarity=0.508 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEE
Q ss_conf 3564542468999999974089748999678899999999998399975
Q gi|254780434|r 265 SGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLI 313 (362)
Q Consensus 265 SG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~V 313 (362)
||.+ +|+..++|+.+|+.. .+++||-.|||.++|=|.+..+||||.+
T Consensus 163 SGAs-~Pv~~e~i~~~k~~~-~~I~LIVGGGIr~~EiA~~~v~aGAd~I 209 (212)
T TIGR01769 163 SGAS-EPVSPETISLVKKKI-SSIPLIVGGGIRSPEIALKIVLAGADVI 209 (212)
T ss_pred CCCC-CCCCHHHHHHHHHHC-CCCCEEECCCCCCHHHHHHHHHHCCCEE
T ss_conf 7866-678667999999854-8972775277588899999997089826
No 220
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=96.78 E-value=0.02 Score=36.18 Aligned_cols=176 Identities=15% Similarity=0.156 Sum_probs=80.5
Q ss_pred HHHHHHHHHCCCCEE-ECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHH-HHHHHCCCCCCEEECCCC
Q ss_conf 779888740367524-102001368789988626884255541000024777778899987-641000121000110454
Q gi|254780434|r 68 AEVPIELLKLGFGFV-EIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRL-SKIQPTSPIGINLGANKD 145 (362)
Q Consensus 68 ~~~~~~l~~~G~G~v-~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l-~~~~~~~pi~vsI~~~~~ 145 (362)
.+.++.+.+.|.-++ +.|| |-+-. - + .-.....+++.. +......||++.++. +
T Consensus 25 ~~~v~~li~~Gv~gi~v~Gs-tGE~~------~---L------------s~eEr~~v~~~~v~~~~grvpvi~gvg~--~ 80 (296)
T PRK03620 25 REHLEWLAPYGAAALFAAGG-TGEFF------S---L------------TPDEYSQVVRAAVEACAGRVPVIAGAGG--G 80 (296)
T ss_pred HHHHHHHHHCCCCEEEECCC-CCCHH------H---C------------CHHHHHHHHHHHHHHHCCCCEEEECCCC--C
T ss_conf 99999999779998996842-31343------4---8------------9999999999999983897359825775--3
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC--CCHH
Q ss_conf 24678877655542067552698303336532211000023432111122444556553126885178650577--7748
Q gi|254780434|r 146 SKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPD--LSEE 223 (362)
Q Consensus 146 s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd--~~~~ 223 (362)
+.+.+ ++.+.+++++ ||++-+ ..|-... .+.+.+.+....+.+ ...+||++==.|. ++.+
T Consensus 81 t~~ai-~la~~A~~~G--adai~v--~pPyy~~----~~~~~l~~~~~~ia~---------a~~lPi~lYn~~~~~~~~~ 142 (296)
T PRK03620 81 TAQAI-EYAQAAERAG--ADGILL--LPPYLTE----APQEGLAAHVEAVCK---------STDLGVIVYNRDNAVLTAD 142 (296)
T ss_pred HHHHH-HHHHHHHHCC--CCEEEE--CCCCCCC----CCHHHHHHHHHHHHH---------HCCCCEEEECCCCCCCCHH
T ss_conf 79999-9999999829--998996--6986789----999999999999998---------3189977517888776999
Q ss_pred HHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCH-HH
Q ss_conf 889999987644-9829998066555323457754463221135645424689999999740897489996788999-99
Q gi|254780434|r 224 ELDDIAVEVLSH-KVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISST-KD 301 (362)
Q Consensus 224 ~i~~ia~~a~~~-g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~-~D 301 (362)
.+.++++ +. ++-||== + || .+..+.++.+..++++.++ +|..+. ..
T Consensus 143 ~l~~L~~---~~pnivgiKd--s-------------------s~------d~~~~~~~~~~~~~~~~v~--~G~~~~~~~ 190 (296)
T PRK03620 143 TLARLAE---RCPNLIGFKD--G-------------------VG------DIELMVRITRALGDRLLYL--GGLPTAEVF 190 (296)
T ss_pred HHHHHHH---HCCCEEEEEE--C-------------------CC------CHHHHHHHHHHCCCCEEEE--ECCCHHHHH
T ss_conf 9999997---2898899995--8-------------------68------8999999999769975998--289644788
Q ss_pred HHHHHHCCCCEEEECH
Q ss_conf 9999983999754527
Q gi|254780434|r 302 ALDKIMAGANLIQLYS 317 (362)
Q Consensus 302 a~e~l~aGAs~VQi~T 317 (362)
+..++..||+..-.++
T Consensus 191 ~~~~~~~G~~g~~s~~ 206 (296)
T PRK03620 191 AAAYLALGVPTYSSAV 206 (296)
T ss_pred HHHHHCCCCCEEEECC
T ss_conf 8899628885784030
No 221
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=96.77 E-value=0.019 Score=36.36 Aligned_cols=179 Identities=15% Similarity=0.124 Sum_probs=80.2
Q ss_pred HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHH-HHHHHCCCCCCEEECCCCC
Q ss_conf 779888740367524102001368789988626884255541000024777778899987-6410001210001104542
Q gi|254780434|r 68 AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRL-SKIQPTSPIGINLGANKDS 146 (362)
Q Consensus 68 ~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l-~~~~~~~pi~vsI~~~~~s 146 (362)
.+.++.+.+.|.-++.+...|-+-. .+. -.....+.+.. +......|+++.++. ++
T Consensus 24 ~~~i~~l~~~Gv~gi~v~GstGE~~---------~Ls------------~eEr~~v~~~~~~~~~g~~~vi~g~g~--~t 80 (289)
T cd00951 24 RAHVEWLLSYGAAALFAAGGTGEFF---------SLT------------PDEYAQVVRAAVEETAGRVPVLAGAGY--GT 80 (289)
T ss_pred HHHHHHHHHCCCCEEEECCHHHCCC---------CCC------------HHHHHHHHHHHHHHCCCCCEEEECCCC--HH
T ss_conf 9999999977999999793300621---------289------------999999999999981898517406763--19
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC--CCCHHH
Q ss_conf 467887765554206755269830333653221100002343211112244455655312688517865057--777488
Q gi|254780434|r 147 KDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISP--DLSEEE 224 (362)
Q Consensus 147 ~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsP--d~~~~~ 224 (362)
.+. .++.+.+++. ++|++-+ ..|-... .+.+.+.+...++.+ ...+||++==.| +++.+.
T Consensus 81 ~~~-i~la~~a~~~--Gadav~v--~pPy~~~----~~~~~l~~~~~~ia~---------a~~lpi~lYn~~~~~~~~~~ 142 (289)
T cd00951 81 ATA-IAYAQAAEKA--GADGILL--LPPYLTE----APQEGLYAHVEAVCK---------STDLGVIVYNRANAVLTADS 142 (289)
T ss_pred HHH-HHHHHHHHHC--CCCEEEE--CCCCCCC----CCHHHHHHHHHHHHH---------HCCCCEEECCCCCCCCCHHH
T ss_conf 999-9999999975--9999997--6988889----999999999999998---------46998661488776778999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH-HH
Q ss_conf 89999987644982999806655532345775446322113564542468999999974089748999678899999-99
Q gi|254780434|r 225 LDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKD-AL 303 (362)
Q Consensus 225 i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~D-a~ 303 (362)
+.++++.. -++.||=- + || .+..+.++.+..++++.+ .+|..+.+. +.
T Consensus 143 l~~L~~~~--p~i~giK~--s-------------------~~------d~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~ 191 (289)
T cd00951 143 LARLAERC--PNLVGFKD--G-------------------VG------DIELMRRIVAKLGDRLLY--LGGLPTAEVFAL 191 (289)
T ss_pred HHHHHHHC--CCEEEEEE--C-------------------CC------CHHHHHHHHHHCCCCCEE--EECCCCCHHHHH
T ss_conf 99999836--87899997--8-------------------88------999999999975998289--858983379999
Q ss_pred HHHHCCCCEEEECHH
Q ss_conf 999839997545278
Q gi|254780434|r 304 DKIMAGANLIQLYSA 318 (362)
Q Consensus 304 e~l~aGAs~VQi~Ta 318 (362)
.++.+||+..-.+++
T Consensus 192 ~~~~~G~~g~~~~~~ 206 (289)
T cd00951 192 AYLAMGVPTYSSAVF 206 (289)
T ss_pred HHHCCCCEEEEHHHH
T ss_conf 998499849826755
No 222
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=96.77 E-value=0.053 Score=33.28 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=26.7
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 8999999974089748999678899999999998399975452787706
Q gi|254780434|r 274 TIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYE 322 (362)
Q Consensus 274 l~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~ 322 (362)
+..-.++...++.+..+|+=-||.|.+|+..+ ..+|+++-|++++|.+
T Consensus 198 l~~t~~l~~~ip~~~~~vsESGI~~~~dv~~l-~~~~~~~LvGe~lmr~ 245 (459)
T PRK09427 198 LNRTRELAPLIPADVTVISESGIYTHAQVREL-SPFVNGFLIGSSLMAE 245 (459)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH-HHHCCEEEECHHHHCC
T ss_conf 79999999768999749973799999999999-8439999978587579
No 223
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.75 E-value=0.025 Score=35.52 Aligned_cols=44 Identities=23% Similarity=0.098 Sum_probs=33.0
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 9999999740897489996788999999999983999754527877
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMI 320 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali 320 (362)
..++.++.-+ ++++++.+|||.- +.+.+|+.+++-++-.+|.++
T Consensus 144 ~~lkal~~p~-p~~~~~ptGGV~~-~N~~~yl~~~~v~~vgGs~l~ 187 (212)
T PRK06015 144 AFLKALSSPL-AGTFFCPTGGISL-KNARDYLSLPNVVCVGGSWVA 187 (212)
T ss_pred HHHHHHHCCC-CCCCEEECCCCCH-HHHHHHHCCCCEEEEECHHHC
T ss_conf 9999985779-9998886289898-889999808981999883538
No 224
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=96.72 E-value=0.018 Score=36.53 Aligned_cols=190 Identities=16% Similarity=0.142 Sum_probs=88.3
Q ss_pred HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHH-HHHHCCCCCCEEECCCCC
Q ss_conf 7798887403675241020013687899886268842555410000247777788999876-410001210001104542
Q gi|254780434|r 68 AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLS-KIQPTSPIGINLGANKDS 146 (362)
Q Consensus 68 ~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~-~~~~~~pi~vsI~~~~~s 146 (362)
.+.++.+.+.|.-++.+..-|-+-.. + .-.....+.+... ......||++.++. ++
T Consensus 29 ~~~i~~l~~~Gv~gi~v~GstGE~~~---------L------------s~eEr~~l~~~~~~~~~g~~~vi~gvg~--~t 85 (296)
T TIGR03249 29 RENIEWLLGYGLEALFAAGGTGEFFS---------L------------TPAEYEQVVEIAVSTAKGKVPVYTGVGG--NT 85 (296)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHH---------C------------CHHHHHHHHHHHHHHCCCCCEEECCCCH--HH
T ss_conf 99999999779998997830516665---------8------------9999999999999983898415127861--29
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC--CCCHHH
Q ss_conf 467887765554206755269830333653221100002343211112244455655312688517865057--777488
Q gi|254780434|r 147 KDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISP--DLSEEE 224 (362)
Q Consensus 147 ~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsP--d~~~~~ 224 (362)
.+++ ++.+-++++ ++|++-+ .+|-... .+.+.+.+....+.+ ...+||++==-| +++.+.
T Consensus 86 ~~ai-~la~~a~~~--Gad~v~v--~pPyy~~----~~~~~l~~~f~~ia~---------a~~~pi~lYn~~~~~~~~~~ 147 (296)
T TIGR03249 86 SDAI-EIARLAEKA--GADGYLL--LPPYLIN----GEQEGLYAHVEAVCE---------STDLGVIVYQRDNAVLNADT 147 (296)
T ss_pred HHHH-HHHHHHHHC--CCCEEEE--CCCCCCC----CCHHHHHHHHHHHHH---------HCCCCEEEECCCCCCCCHHH
T ss_conf 9999-999999875--9997897--7998899----999999999999997---------15997787307787879999
Q ss_pred HHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH-H
Q ss_conf 89999987644-982999806655532345775446322113564542468999999974089748999678899999-9
Q gi|254780434|r 225 LDDIAVEVLSH-KVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKD-A 302 (362)
Q Consensus 225 i~~ia~~a~~~-g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~D-a 302 (362)
+.++++ +. ++-||-- + || .+..+.++.+..++++.+ .+|..+.+. .
T Consensus 148 l~~L~~---~~p~i~giK~--s-------------------~~------d~~~~~~~~~~~~~~~~~--~~g~~~~d~~~ 195 (296)
T TIGR03249 148 LERLAD---RCPNLVGFKD--G-------------------IG------DMEQMIEITQRLGDRLGY--LGGMPTAEVTA 195 (296)
T ss_pred HHHHHH---CCCCEEEEEE--C-------------------CC------CHHHHHHHHHHCCCCCEE--EECCCCHHHHH
T ss_conf 999981---5798799997--7-------------------66------899999999973997279--73897128999
Q ss_pred HHHHHCCCCEEEECHHHHCCCHHHHHHHHH
Q ss_conf 999983999754527877069789999999
Q gi|254780434|r 303 LDKIMAGANLIQLYSAMIYEGISLPKRIIQ 332 (362)
Q Consensus 303 ~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~ 332 (362)
..++.+|++....+++-++ |.+..++.+
T Consensus 196 ~~~~~~G~~g~i~~~~n~~--P~~~~~l~~ 223 (296)
T TIGR03249 196 PAYLPLGVTSYSSAIFNFI--PHIARAFYE 223 (296)
T ss_pred HHHHHCCCCEEEEHHHHHH--HHHHHHHHH
T ss_conf 9999389989962465675--999999999
No 225
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=96.71 E-value=0.0087 Score=38.57 Aligned_cols=70 Identities=21% Similarity=0.338 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH
Q ss_conf 88999998764498299980665553234577544632211356454246899999997408974899967889999999
Q gi|254780434|r 224 ELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDAL 303 (362)
Q Consensus 224 ~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~ 303 (362)
+..+.++.+.++|+|.|++- | ... .| ...++.++++++.+ ++++|| +|.|.+.+-+.
T Consensus 228 ~~~eRa~~Lv~AGvDvivID-t---------AhG------hs-----~~vi~~ik~ik~~~-~~v~vi-aGNv~T~~~a~ 284 (486)
T PRK05567 228 DNEERAEALVKAGVDVLVVD-T---------AHG------HS-----EGVLDRVREIKAKY-PDVQII-AGNVATAEAAR 284 (486)
T ss_pred CHHHHHHHHHHCCCCEEEEE-C---------CCC------CH-----HHHHHHHHHHHHCC-CCCCEE-EEEECHHHHHH
T ss_conf 18999999997699889950-4---------452------15-----77899999997407-877368-75120199999
Q ss_pred HHHHCCCCEEEEC
Q ss_conf 9998399975452
Q gi|254780434|r 304 DKIMAGANLIQLY 316 (362)
Q Consensus 304 e~l~aGAs~VQi~ 316 (362)
+.+.+|||+|-|+
T Consensus 285 ~L~~aGaD~vkVG 297 (486)
T PRK05567 285 ALIEAGADAVKVG 297 (486)
T ss_pred HHHHCCCCEEEEC
T ss_conf 9997298769965
No 226
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.70 E-value=0.045 Score=33.80 Aligned_cols=102 Identities=20% Similarity=0.269 Sum_probs=62.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 786505777748889999987644982999806--655532345775446322113564542468999999974089748
Q gi|254780434|r 212 IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSN--TTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIA 289 (362)
Q Consensus 212 i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~N--T~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~ 289 (362)
.++-+|-. ...++ ..+.+.|+|-+.+.- .|...++ . ..+.....++++.+.. ++|
T Consensus 104 ~iiG~S~h----~~~e~-~~A~~~gaDYi~~Gpvf~T~tK~~---------~-------~~~~g~~~l~~~~~~~--~iP 160 (210)
T PRK00043 104 AIIGVSTH----TLEEA-AAAAAAGADYVGVGPIFPTPTKKD---------A-------KPAVGLELLREAREAI--DIP 160 (210)
T ss_pred CEEEEECC----CHHHH-HHHHHHCCCEEEECCCCCCCCCCC---------C-------CCCCCHHHHHHHHHHC--CCC
T ss_conf 78998479----99999-999882898388745214798888---------8-------7778999999999847--999
Q ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 99967889999999999839997545278770697899999999999999
Q gi|254780434|r 290 IIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLN 339 (362)
Q Consensus 290 IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~ 339 (362)
+++.||| +.+++.+.+.+||+-|-+.|+++.. +. ++.-.++|.+.++
T Consensus 161 vvAIGGI-~~~ni~~~~~~Ga~giAvis~I~~a-~d-p~~a~~~l~~~~~ 207 (210)
T PRK00043 161 IVAIGGI-TPENAAEVLEAGADGVAVVSAITAA-ED-PAAAARALLAAFR 207 (210)
T ss_pred EEEECCC-CHHHHHHHHHCCCCEEEEEHHHHCC-CC-HHHHHHHHHHHHH
T ss_conf 8998088-9999999998099999970897769-99-9999999999999
No 227
>PRK08104 consensus
Probab=96.69 E-value=0.029 Score=35.10 Aligned_cols=44 Identities=25% Similarity=0.202 Sum_probs=35.7
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 9999999740897489996788999999999983999754527877
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMI 320 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali 320 (362)
..++.++.-+ ++++++.+|||. .+.+.+|+.+|+-++-.+|.++
T Consensus 144 ~~lkal~~p~-p~~~f~ptGGV~-~~N~~~yl~~~~v~~vgGS~l~ 187 (212)
T PRK08104 144 KALQAISGPF-SQIRFCPTGGIT-PANYRDYLALKSVLCIGGSWLV 187 (212)
T ss_pred HHHHHHHCCC-CCCEEEECCCCC-HHHHHHHHHCCCEEEEECHHHC
T ss_conf 9999985558-998189648989-8899999807987999883538
No 228
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.68 E-value=0.053 Score=33.29 Aligned_cols=156 Identities=16% Similarity=0.216 Sum_probs=86.2
Q ss_pred HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCH
Q ss_conf 77988874036752410200136878998862688425554100002477777889998764100012100011045424
Q gi|254780434|r 68 AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSK 147 (362)
Q Consensus 68 ~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~ 147 (362)
.+..+.+.+.|+-.+|+- |++++.-..++.+++..++..+|+ ++-.+.
T Consensus 19 ~~~~~al~~~Gi~~iEit-----------------------------l~t~~a~~~i~~l~~~~~~~~iGa---GTV~~~ 66 (190)
T cd00452 19 LALAEALIEGGIRAIEIT-----------------------------LRTPGALEAIRALRKEFPEALIGA---GTVLTP 66 (190)
T ss_pred HHHHHHHHHCCCCEEEEE-----------------------------CCCCHHHHHHHHHHHHCCCCEEEE---CCCCCH
T ss_conf 999999998699889996-----------------------------788029999999998689808965---234779
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 67887765554206755269830333653221100002343211112244455655312688517865057777488899
Q gi|254780434|r 148 DFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDD 227 (362)
Q Consensus 148 ~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ 227 (362)
+..+ +....+|+|+ -+|+.. + ++++... ...+|++--.. |. .+
T Consensus 67 ~~~~------~a~~aGa~Fi----vsP~~~-------~----~v~~~a~----------~~~~~~iPGv~---Tp---sE 109 (190)
T cd00452 67 EQAD------AAIAAGAQFI----VSPGLD-------P----EVVKAAN----------RAGIPLLPGVA---TP---TE 109 (190)
T ss_pred HHHH------HHHHCCCCEE----ECCCCC-------H----HHHHHHH----------HCCCCEECCCC---CH---HH
T ss_conf 9999------9998599899----737799-------9----9999999----------82996657879---99---99
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH
Q ss_conf 99987644982999806655532345775446322113564542468999999974089748999678899999999998
Q gi|254780434|r 228 IAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIM 307 (362)
Q Consensus 228 ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~ 307 (362)
+..+.++|++-+-++-- . .. | ...++.++.-+ ++++++.+|||.- +++.+|+.
T Consensus 110 -i~~A~~~G~~~vK~FPa------------~--~~---G-------~~~lkal~~pf-p~~~~~ptGGI~~-~N~~~yl~ 162 (190)
T cd00452 110 -IMQALELGADIVKLFPA------------E--AV---G-------PAYIKALKGPF-PQVRFMPTGGVSL-DNAAEWLA 162 (190)
T ss_pred -HHHHHHCCCCEEEECCC------------C--CC---C-------HHHHHHHHCCC-CCCCEEEECCCCH-HHHHHHHH
T ss_conf -99999879998998955------------1--14---9-------99999985548-9993899679998-88999996
Q ss_pred CCCCEEEECHHH
Q ss_conf 399975452787
Q gi|254780434|r 308 AGANLIQLYSAM 319 (362)
Q Consensus 308 aGAs~VQi~Tal 319 (362)
+|+.+|.+++.+
T Consensus 163 ~gv~avG~g~~l 174 (190)
T cd00452 163 AGVVAVGGGSLL 174 (190)
T ss_pred CCCEEEEECHHC
T ss_conf 899899954125
No 229
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.68 E-value=0.036 Score=34.46 Aligned_cols=132 Identities=11% Similarity=0.135 Sum_probs=79.2
Q ss_pred HHHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHH
Q ss_conf 776555420-675526983033365322110000234321111224445565531268851-786505777748889999
Q gi|254780434|r 152 DYVSGIRLF-FTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVP-IFLKISPDLSEEELDDIA 229 (362)
Q Consensus 152 dy~~~~~~~-~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~P-i~vKLsPd~~~~~i~~ia 229 (362)
+-...++.+ ..+...+|+-++.|+.. +. +..+.+. ....| +.+-..-=++ .+-+
T Consensus 26 ~a~~~~~al~~gGi~~iEITl~tp~a~--------~~----i~~l~~~--------~~~~p~~~iGaGTV~~----~e~~ 81 (209)
T PRK06552 26 EALKISLAVIKGGIKAIEVTYTNPFAS--------EV----IKELVER--------YKDDPEVLIGAGTVLD----AVTA 81 (209)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHH--------HH----HHHHHHH--------HCCCCCEEEEEECCCC----HHHH
T ss_conf 999999999987998899967897599--------99----9999998--------1779981898872748----9999
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 98764498299980665553234577544632211356454246899999997408974899967889999999999839
Q gi|254780434|r 230 VEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAG 309 (362)
Q Consensus 230 ~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aG 309 (362)
+.+.++|++.++-=++ ..+.+...++ . +++ -.=|++|+.++.+-+.+|
T Consensus 82 ~~a~~aGA~FiVSP~~---------------------------~~~v~~~a~~-~--~i~--~iPG~~TpsEi~~A~~~G 129 (209)
T PRK06552 82 RQAILAGAQFIVSPSF---------------------------NRETAKICNR-Y--QIP--YLPGCMTVTEIVTALEAG 129 (209)
T ss_pred HHHHHCCCCEEECCCC---------------------------CHHHHHHHHH-C--CCC--EECCCCCHHHHHHHHHCC
T ss_conf 9999859988976999---------------------------8999999998-5--996--417979999999999869
Q ss_pred CCEEEECHHHHCCCHHHHHHHH----------------HHHHHHHHH
Q ss_conf 9975452787706978999999----------------999999998
Q gi|254780434|r 310 ANLIQLYSAMIYEGISLPKRII----------------QGLSDFLNK 340 (362)
Q Consensus 310 As~VQi~Tali~~Gp~~~~~I~----------------~~L~~~l~~ 340 (362)
|++|.++-|-.. ||..++.+. +-+.+||+.
T Consensus 130 a~~vKlFPA~~~-G~~yikal~~p~p~~~~~ptGGV~~~N~~~~l~a 175 (209)
T PRK06552 130 VDIVKLFPGSTV-GPSFISAIKGPLPQVNIMVTGGVSLDNVKDWFAA 175 (209)
T ss_pred CCEEEECCHHHC-CHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHC
T ss_conf 995885833324-8999999866489992886389998889999987
No 230
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.66 E-value=0.034 Score=34.63 Aligned_cols=34 Identities=12% Similarity=0.330 Sum_probs=24.2
Q ss_pred CCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf 97485346888677988874036752410200136
Q gi|254780434|r 56 NPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPH 90 (362)
Q Consensus 56 nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~ 90 (362)
-||=++.|. ++.+.++.++++|+.-|++||...+
T Consensus 77 ~~iqvGGGI-Rs~e~i~~~l~~G~~rViigT~a~~ 110 (234)
T PRK13587 77 KDIEVGGGI-RTKSQIMDYFAAGINYCIVGTKGIQ 110 (234)
T ss_pred CCEEEECCC-CCHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 867984654-7599999999768999998881302
No 231
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=96.65 E-value=0.065 Score=32.71 Aligned_cols=186 Identities=23% Similarity=0.300 Sum_probs=106.9
Q ss_pred HHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHH
Q ss_conf 88874036752410200136878998862688425554100002477777889998764100012100011045424678
Q gi|254780434|r 71 PIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFI 150 (362)
Q Consensus 71 ~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~ 150 (362)
.+.....+.-.+|+|| | + |- +.|++ ..+.+++.+++.++.+-. ++-++.+-
T Consensus 22 a~e~v~~~~diiE~GT-----------P----L------Ik-----~eG~~-aV~~lr~~fP~~~ivAD~-KtmDaG~~- 72 (429)
T PRK07028 22 AKEAVAGGADWIEAGT-----------P----L------IK-----SEGMN-AIRTLRKNFPDLTIVADM-KTMDTGAM- 72 (429)
T ss_pred HHHHHHCCCCEEEECC-----------H----H------HH-----HHHHH-HHHHHHHHCCCCEEEEEE-EECCCCHH-
T ss_conf 9987415875999176-----------8----8------88-----64189-999999878998698876-40455088-
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 87765554206755269830333653221100002343211112244455655312688517865057777488899999
Q gi|254780434|r 151 LDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAV 230 (362)
Q Consensus 151 ~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~ 230 (362)
+ +++ .+..+||++++-=.+|+ ..+. .++...+. .-+-+.+-| +.-++..+-++
T Consensus 73 E--a~~--A~~AGADivtVlG~a~d----------~TI~---~aV~aA~k-------~G~~v~vDl---I~v~d~~~ra~ 125 (429)
T PRK07028 73 E--VEM--AAKAGADVVCILGVADD----------STIA---DAVRAARK-------YGVLVMADL---INVPDPVKRAV 125 (429)
T ss_pred H--HHH--HHHCCCCEEEEECCCCH----------HHHH---HHHHHHHH-------CCCEEEEEE---CCCCCHHHHHH
T ss_conf 9--999--98769988999457883----------6999---99999997-------098899985---58998899999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 87644982999806655532345775446322113564542468999999974089748999678899999999998399
Q gi|254780434|r 231 EVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGA 310 (362)
Q Consensus 231 ~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGA 310 (362)
.+++.|+|-|.+ .| +++.. .-|. .++..++++++.+ +++|--.|||.. +.+-+.+.+||
T Consensus 126 el~~lGvd~I~v-H~-----G~D~Q--------~~g~----~p~~~l~~v~~~~--~~~vAVAGGi~~-~t~~~~v~~GA 184 (429)
T PRK07028 126 ELEELGVDIINV-HV-----GIDQQ--------MLGK----DPLELLKKVSEEV--SIPIAAAGGLDA-ETAVKAVEAGA 184 (429)
T ss_pred HHHHCCCCEEEE-EE-----EECHH--------HCCC----CHHHHHHHHHHHC--CCEEEEECCCCH-HHHHHHHHCCC
T ss_conf 999709988999-76-----23355--------3179----8499999999755--971899668787-76999997599
Q ss_pred CEEEECHHHHCCC--H-HHHHHHHHHH
Q ss_conf 9754527877069--7-8999999999
Q gi|254780434|r 311 NLIQLYSAMIYEG--I-SLPKRIIQGL 334 (362)
Q Consensus 311 s~VQi~Tali~~G--p-~~~~~I~~~L 334 (362)
|.|-++.+. ++- | +..++|.+.+
T Consensus 185 dIvIVGgaI-~~a~dp~~aAr~ir~ai 210 (429)
T PRK07028 185 DIVIVGGNI-YKSADVTGAARDIREAL 210 (429)
T ss_pred CEEEECCCC-CCCCCHHHHHHHHHHHH
T ss_conf 899989400-57999799999999997
No 232
>PRK08904 consensus
Probab=96.64 E-value=0.049 Score=33.49 Aligned_cols=44 Identities=20% Similarity=0.099 Sum_probs=34.5
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 9999999740897489996788999999999983999754527877
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMI 320 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali 320 (362)
..++.++.-+ ++++++.+|||. .+.+.+|+.+|+-++-.+|-++
T Consensus 139 ~~lkal~~pf-p~i~~~pTGGV~-~~N~~~yl~~~~v~~vgGS~l~ 182 (207)
T PRK08904 139 AMLKALYGPY-ADVRFCPTGGIS-LATAPEYLALPNVLCVGGSWLT 182 (207)
T ss_pred HHHHHHHCCC-CCCEEEECCCCC-HHHHHHHHHCCCEEEEECHHHC
T ss_conf 9999874659-998088658989-8789999818984999881438
No 233
>PRK08782 consensus
Probab=96.63 E-value=0.02 Score=36.09 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=33.0
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 9999999740897489996788999999999983999754527877
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMI 320 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali 320 (362)
..++.++.-+ ++++++.+|||. .+.+.+|+.+|+-++-.+|.++
T Consensus 146 ~~lkal~~pf-p~~~f~pTGGV~-~~N~~~yl~~~~v~~vgGS~l~ 189 (219)
T PRK08782 146 QMLKGLAGPL-SELKLCPTGGIS-ETNAAEFLSQPNVLCIGGSWMV 189 (219)
T ss_pred HHHHHHHCCC-CCCEEEECCCCC-HHHHHHHHHCCCEEEEECHHHC
T ss_conf 9999984769-998187679989-8789999807993999882538
No 234
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.62 E-value=0.039 Score=34.16 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=15.5
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 899999997408974899967889999999999839997545
Q gi|254780434|r 274 TIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQL 315 (362)
Q Consensus 274 l~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi 315 (362)
++.++++|+.++ +++|| +|.|.|++-+.+.+.+|||.|-|
T Consensus 123 ~~~ik~ir~~~p-~~~Ii-aGNV~T~e~a~~L~~~GaD~vkV 162 (325)
T cd00381 123 IEMIKFIKKKYP-NVDVI-AGNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHHHHHCC-CCCEE-ECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 999999997689-97568-64566899999998669989997
No 235
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=96.61 E-value=0.035 Score=34.49 Aligned_cols=188 Identities=15% Similarity=0.158 Sum_probs=84.9
Q ss_pred HHHHHHHHHCCCCEEE-CCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHH-HHHCCCCCCEEECCCC
Q ss_conf 7798887403675241-0200136878998862688425554100002477777889998764-1000121000110454
Q gi|254780434|r 68 AEVPIELLKLGFGFVE-IGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSK-IQPTSPIGINLGANKD 145 (362)
Q Consensus 68 ~~~~~~l~~~G~G~v~-~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~-~~~~~pi~vsI~~~~~ 145 (362)
.+.++.+.+.|.-++. .|| |-+- +.+.. .....+++...+ ...+.|+++.++.+.
T Consensus 25 ~~~v~~l~~~Gv~Gi~~~Gs-tGE~---------~~Ls~------------~Er~~v~~~~~~~~~~~~pvi~gv~~~~- 81 (292)
T PRK03170 25 RKLVDYQIANGTDGLVVVGT-TGES---------PTLTH------------EEHEELIRAVVEAVNGRVPVIAGTGSNS- 81 (292)
T ss_pred HHHHHHHHHCCCCEEEECEE-CCCC---------CCCCH------------HHHHHHHHHHHHHCCCCCEEEECCCCCC-
T ss_conf 99999999779999996832-4141---------12899------------9999999999987389712884378767-
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC-----CC
Q ss_conf 2467887765554206755269830333653221100002343211112244455655312688517865057-----77
Q gi|254780434|r 146 SKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISP-----DL 220 (362)
Q Consensus 146 s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsP-----d~ 220 (362)
+.+ ..++++-+++. +||++-+ ..|..- + .+.+.+.+....+.+ ...+||++==-| ++
T Consensus 82 t~~-~i~~a~~A~~~--Gadav~v--~~P~y~--~--~s~~~l~~~f~~ia~---------~~~~Pi~lYn~P~~tg~~l 143 (292)
T PRK03170 82 TAE-AIELTKFAEKA--GADGALV--VTPYYN--K--PTQEGLYQHFKAIAE---------ATDLPIILYNVPGRTGVDI 143 (292)
T ss_pred HHH-HHHHHHHHHHC--CCCEEEE--CCCCCC--C--CCHHHHHHHHHHHHH---------CCCCCEEEEECCCCCCCCC
T ss_conf 999-99999989875--9998996--177688--9--999999999999986---------3599769873786327676
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHH
Q ss_conf 74888999998764498299980665553234577544632211356454246899999997408974899967889999
Q gi|254780434|r 221 SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTK 300 (362)
Q Consensus 221 ~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~ 300 (362)
+.+.+.+++ + .+.|+.+- + . || ....+.++.+..++++.+.+ | +..
T Consensus 144 ~~~~l~~L~----~--~~nv~giK-----d----s---------s~------d~~~~~~~~~~~~~~~~v~~--G--~d~ 189 (292)
T PRK03170 144 LPETVARLA----E--HPNIVGIK-----E----A---------TG------DLERVSELRELCPDDFAVYS--G--DDA 189 (292)
T ss_pred CHHHHHHHH----C--CCCEEEEE-----E----C---------CC------CHHHHHHHHHHCCCCCEEEC--C--CHH
T ss_conf 999999981----7--89989999-----6----9---------99------99999999986698736745--8--489
Q ss_pred HHHHHHHCCCCEEEECHHHHCCCHHHHHHHHH
Q ss_conf 99999983999754527877069789999999
Q gi|254780434|r 301 DALDKIMAGANLIQLYSAMIYEGISLPKRIIQ 332 (362)
Q Consensus 301 Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~ 332 (362)
-.++.+.+||+-.-.+++.++ |..+.++.+
T Consensus 190 ~~~~~l~~Ga~G~is~~~n~~--P~~~~~i~~ 219 (292)
T PRK03170 190 LALPFLALGGVGVISVTANVA--PKEMAEMCD 219 (292)
T ss_pred HHHHHHHHCCCEEEEEHHHHH--HHHHHHHHH
T ss_conf 999999943986998447644--899999999
No 236
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.58 E-value=0.037 Score=34.32 Aligned_cols=43 Identities=23% Similarity=0.218 Sum_probs=29.6
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH-CCCCEEEECHHHH
Q ss_conf 999999974089748999678899999999998-3999754527877
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIM-AGANLIQLYSAMI 320 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~-aGAs~VQi~Tali 320 (362)
..++.++.-+ ++++++.+|||. .+.+.+|+. .++-+|. +|.++
T Consensus 144 ~~lkal~~p~-p~i~~~ptGGV~-~~N~~~yl~~~~v~avg-GS~l~ 187 (212)
T PRK05718 144 KMLKALAGPF-SDVRFCPTGGIS-PANYRDYLALPNVLCIG-GSWMV 187 (212)
T ss_pred HHHHHHHCCC-CCCEEEECCCCC-HHHHHHHHCCCCEEEEE-CHHHC
T ss_conf 9999985658-998288659989-87899998178869998-73528
No 237
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=96.58 E-value=0.03 Score=35.00 Aligned_cols=31 Identities=32% Similarity=0.278 Sum_probs=15.9
Q ss_pred CCEEECCCCCCCHHHHHHHHHCCCCEEECCCC
Q ss_conf 97485346888677988874036752410200
Q gi|254780434|r 56 NPLGMAAGYDKNAEVPIELLKLGFGFVEIGTV 87 (362)
Q Consensus 56 nPiglAaG~dk~~~~~~~l~~~G~G~v~~kti 87 (362)
-|+-+..|. ++-+.++.+++.|+--++++|.
T Consensus 79 ~pi~vGGGI-rs~~~~~~~l~~Gadkvvigs~ 109 (233)
T cd04723 79 LGLWVDGGI-RSLENAQEWLKRGASRVIVGTE 109 (233)
T ss_pred CCEEEECCC-CCHHHHHHHHHCCCCEEECCCH
T ss_conf 988997022-7699999998607201524510
No 238
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=96.58 E-value=0.037 Score=34.34 Aligned_cols=189 Identities=13% Similarity=0.135 Sum_probs=86.6
Q ss_pred HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHH-HHCCCCCCEEECCCCC
Q ss_conf 779888740367524102001368789988626884255541000024777778899987641-0001210001104542
Q gi|254780434|r 68 AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKI-QPTSPIGINLGANKDS 146 (362)
Q Consensus 68 ~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~-~~~~pi~vsI~~~~~s 146 (362)
.+.++.+.+.|..++.+..-|-+- +.+ .-.....+.+...+. ..+.||++.++.+. +
T Consensus 24 ~~~v~~l~~~Gv~gi~v~GstGE~---------~~L------------s~~Er~~l~~~~~~~~~~~~~vi~gv~~~~-t 81 (284)
T cd00950 24 ERLIEFQIENGTDGLVVCGTTGES---------PTL------------SDEEHEAVIEAVVEAVNGRVPVIAGTGSNN-T 81 (284)
T ss_pred HHHHHHHHHCCCCEEEECEECCCH---------HHC------------CHHHHHHHHHHHHHHCCCCCEEEEECCCCC-H
T ss_conf 999999997699989968435124---------248------------999999999999997189750775078778-9
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC-----CCC
Q ss_conf 467887765554206755269830333653221100002343211112244455655312688517865057-----777
Q gi|254780434|r 147 KDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISP-----DLS 221 (362)
Q Consensus 147 ~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsP-----d~~ 221 (362)
.+. .+..+.+++. +||++-+- .|.... .+.+.+.+....+. ....+||++==-| +++
T Consensus 82 ~~~-i~~a~~A~~~--Gadai~v~--pP~y~~----~s~~~l~~~~~~ia---------~a~~lPi~lYn~P~~tg~~l~ 143 (284)
T cd00950 82 AEA-IELTKRAEKA--GADAALVV--TPYYNK----PSQEGLYAHFKAIA---------EATDLPVILYNVPGRTGVNIE 143 (284)
T ss_pred HHH-HHHHHHHHHC--CCCEEEEC--CCCCCC----CCHHHHHHHHHHHH---------HCCCCCEEEEECCCCCCCCCC
T ss_conf 999-9999999983--99989962--665789----79999999999997---------555997798737641167888
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH
Q ss_conf 48889999987644982999806655532345775446322113564542468999999974089748999678899999
Q gi|254780434|r 222 EEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKD 301 (362)
Q Consensus 222 ~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~D 301 (362)
.+.+.++++ .-.+.|+- .+ || ....+.++.+..++++.++. | +.+-
T Consensus 144 ~~~l~~L~~---~pnv~giK--~s-------------------s~------d~~~~~~~~~~~~~~~~v~~--G--~d~~ 189 (284)
T cd00950 144 PETVLRLAE---HPNIVGIK--EA-------------------TG------DLDRVSELIALCPDDFAVLS--G--DDAL 189 (284)
T ss_pred HHHHHHHHC---CCCEEEEE--CC-------------------CC------CHHHHHHHHHHCCCCCEEEC--C--CHHH
T ss_conf 899999847---99989998--58-------------------89------89999999986698754644--8--6899
Q ss_pred HHHHHHCCCCEEEECHHHHCCCHHHHHHHHH
Q ss_conf 9999983999754527877069789999999
Q gi|254780434|r 302 ALDKIMAGANLIQLYSAMIYEGISLPKRIIQ 332 (362)
Q Consensus 302 a~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~ 332 (362)
.+..+.+||+-.-.+++-++ |..+.+|.+
T Consensus 190 ~~~~l~~Ga~G~i~~~~n~~--P~~~~~l~~ 218 (284)
T cd00950 190 TLPFLALGGVGVISVAANVA--PKLMAEMVR 218 (284)
T ss_pred HHHHHHHCCCEEEEEEHHCC--HHHHHHHHH
T ss_conf 99999954996998531027--899999999
No 239
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.57 E-value=0.04 Score=34.13 Aligned_cols=124 Identities=9% Similarity=0.005 Sum_probs=76.3
Q ss_pred HHHHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 8776555420-675526983033365322110000234321111224445565531268851786505777748889999
Q gi|254780434|r 151 LDYVSGIRLF-FTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIA 229 (362)
Q Consensus 151 ~dy~~~~~~~-~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia 229 (362)
++....++.+ ..+...+|+-+..|+.. +.+ ..+.+. ..+ +.+-..-=++ .+-+
T Consensus 25 ~~a~~~~~al~~gGi~~iEiTl~t~~a~--------~~I----~~l~~~--------~p~--~~iGaGTV~~----~e~~ 78 (210)
T PRK07455 25 ELGLQMAEAVAAGGMRLIEITWNSDQPA--------ELI----SQLREK--------LPE--CIIGTGTLLT----LEDL 78 (210)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHH--------HHH----HHHHHH--------CCC--CEEEEEECCC----HHHH
T ss_conf 9999999999987998899968998899--------999----999987--------899--6898881878----9999
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 98764498299980665553234577544632211356454246899999997408974899967889999999999839
Q gi|254780434|r 230 VEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAG 309 (362)
Q Consensus 230 ~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aG 309 (362)
+.+.++|++-++--++ ....+...++ . ++| -.=|++|+.++.+.+.+|
T Consensus 79 ~~a~~aGA~FiVSP~~---------------------------~~~vi~~a~~-~--~i~--~iPGv~TpsEi~~A~~~G 126 (210)
T PRK07455 79 EEAIAAGAQFCFTPHV---------------------------DLELIQAAVA-A--DIP--IIPGALTPTEIVTAWQAG 126 (210)
T ss_pred HHHHHCCCCEEECCCC---------------------------CHHHHHHHHH-C--CCC--EECCCCCHHHHHHHHHCC
T ss_conf 9999869999986888---------------------------8999999998-2--997--658869999999999869
Q ss_pred CCEEEECHHHHCCCHHHHHHHHH
Q ss_conf 99754527877069789999999
Q gi|254780434|r 310 ANLIQLYSAMIYEGISLPKRIIQ 332 (362)
Q Consensus 310 As~VQi~Tali~~Gp~~~~~I~~ 332 (362)
|+.|-++-+-...||..++.+..
T Consensus 127 ~~~vKlFPA~~~GG~~ylkal~~ 149 (210)
T PRK07455 127 ASCVKVFPVQAVGGADYIKSLQG 149 (210)
T ss_pred CCEEEECCCHHCCCHHHHHHHHC
T ss_conf 98477505132067999999865
No 240
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.55 E-value=0.052 Score=33.32 Aligned_cols=133 Identities=11% Similarity=0.146 Sum_probs=81.7
Q ss_pred HHHHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 8776555420-675526983033365322110000234321111224445565531268851786505777748889999
Q gi|254780434|r 151 LDYVSGIRLF-FTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIA 229 (362)
Q Consensus 151 ~dy~~~~~~~-~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia 229 (362)
++-...++.+ ..+...+|+-++.|+.. +. +..+++. ..+ +.+-..-=++ .+-+
T Consensus 16 ~~a~~~~~al~~~Gi~~iEitl~t~~a~--------~~----i~~l~~~--------~~~--~~iGaGTV~~----~~~~ 69 (190)
T cd00452 16 EDALALAEALIEGGIRAIEITLRTPGAL--------EA----IRALRKE--------FPE--ALIGAGTVLT----PEQA 69 (190)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHH--------HH----HHHHHHH--------CCC--CEEEECCCCC----HHHH
T ss_conf 9999999999986998899967880299--------99----9999986--------898--0896523477----9999
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 98764498299980665553234577544632211356454246899999997408974899967889999999999839
Q gi|254780434|r 230 VEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAG 309 (362)
Q Consensus 230 ~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aG 309 (362)
+.+.++|++-++.-++ ....+...++. ++| -+=|++|+.++...+.+|
T Consensus 70 ~~a~~aGa~FivsP~~---------------------------~~~v~~~a~~~---~~~--~iPGv~TpsEi~~A~~~G 117 (190)
T cd00452 70 DAAIAAGAQFIVSPGL---------------------------DPEVVKAANRA---GIP--LLPGVATPTEIMQALELG 117 (190)
T ss_pred HHHHHCCCCEEECCCC---------------------------CHHHHHHHHHC---CCC--EECCCCCHHHHHHHHHCC
T ss_conf 9999859989973779---------------------------99999999982---996--657879999999999879
Q ss_pred CCEEEECHHHHCCCHHHHHHHH----------------HHHHHHHHHCCC
Q ss_conf 9975452787706978999999----------------999999998389
Q gi|254780434|r 310 ANLIQLYSAMIYEGISLPKRII----------------QGLSDFLNKENE 343 (362)
Q Consensus 310 As~VQi~Tali~~Gp~~~~~I~----------------~~L~~~l~~~G~ 343 (362)
|+.|.++-+-.+ ||..++.+. +.+.+||+. |.
T Consensus 118 ~~~vK~FPa~~~-G~~~lkal~~pfp~~~~~ptGGI~~~N~~~yl~~-gv 165 (190)
T cd00452 118 ADIVKLFPAEAV-GPAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAA-GV 165 (190)
T ss_pred CCEEEECCCCCC-CHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHC-CC
T ss_conf 998998955114-9999999855489993899679998889999968-99
No 241
>pfam01070 FMN_dh FMN-dependent dehydrogenase.
Probab=96.55 E-value=0.049 Score=33.54 Aligned_cols=87 Identities=20% Similarity=0.265 Sum_probs=58.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 178650577774888999998764498299980-6655532345775446322113564542468999999974089748
Q gi|254780434|r 211 PIFLKISPDLSEEELDDIAVEVLSHKVEGIIVS-NTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIA 289 (362)
Q Consensus 211 Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~-NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~ 289 (362)
|.|..|-+..+.+...++++.++++|+++++++ |+.. .... + . -.....-|+++++.++ .|
T Consensus 110 ~~~fQly~~~d~~~~~~~i~ra~~ag~~al~ltvD~~~-------~g~r-~-~-------d~r~~~~i~~l~~~~~--~P 171 (301)
T pfam01070 110 PLWFQLYVPKDRELTEDLLERAEAAGYKALVLTVDTPV-------LGNR-E-R-------DLRNGDDLAWLRDQWK--GP 171 (301)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCC-------CCCC-C-C-------CCCCHHHHHHHHHHCC--CC
T ss_conf 76899874588899999999999749997999726876-------5778-5-3-------2043999999998669--98
Q ss_pred EEEECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 999678899999999998399975452
Q gi|254780434|r 290 IIGTGGISSTKDALDKIMAGANLIQLY 316 (362)
Q Consensus 290 IIg~GGI~s~~Da~e~l~aGAs~VQi~ 316 (362)
+|-= ||.|++||.....+|++.+.|.
T Consensus 172 vivK-GI~s~eDA~~a~~~Gv~~I~VS 197 (301)
T pfam01070 172 LVLK-GILSPEDAKRAVEAGVDGIVVS 197 (301)
T ss_pred EEEE-CCCCHHHHHHHHHCCCCEEEEC
T ss_conf 8998-2899999999998599999964
No 242
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=96.52 E-value=0.039 Score=34.20 Aligned_cols=123 Identities=11% Similarity=0.106 Sum_probs=72.4
Q ss_pred HHHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 776555420-6755269830333653221100002343211112244455655312688517865057777488899999
Q gi|254780434|r 152 DYVSGIRLF-FTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAV 230 (362)
Q Consensus 152 dy~~~~~~~-~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~ 230 (362)
+-...++.+ ..+...+|+-+..|+.. +.+ ..+.+. ... +.+-..-=++ .+-++
T Consensus 21 ~a~~~~~al~~~Gi~~iEiTl~t~~a~--------~~I----~~l~~~--------~p~--~~iGaGTV~~----~e~~~ 74 (196)
T pfam01081 21 DALPLAEALAAGGIRVLEVTLRTPCAL--------DAI----RLLRKN--------RPD--ALVGAGTVLN----AQQLA 74 (196)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHH--------HHH----HHHHHH--------CCC--CEEEEEECCC----HHHHH
T ss_conf 999999999987998899947982799--------999----999964--------999--6799983768----99999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 87644982999806655532345775446322113564542468999999974089748999678899999999998399
Q gi|254780434|r 231 EVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGA 310 (362)
Q Consensus 231 ~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGA 310 (362)
.+.++|++-++--++ ....+....+ . +++ -.=|++|+.++...+.+||
T Consensus 75 ~a~~aGA~FivSP~~---------------------------~~~v~~~a~~-~--~i~--~iPGv~TpsEi~~A~~~G~ 122 (196)
T pfam01081 75 EAAEAGAQFVVSPGL---------------------------TADLLKHAVD-V--KIP--LIPGVSTPSEIMLGLDLGL 122 (196)
T ss_pred HHHHCCCCEEECCCC---------------------------HHHHHHHHHH-C--CCC--EECCCCCHHHHHHHHHCCC
T ss_conf 999749999997876---------------------------3999999997-3--996--6378599999999998799
Q ss_pred CEEEECHHHHCCCHHHHHHHHH
Q ss_conf 9754527877069789999999
Q gi|254780434|r 311 NLIQLYSAMIYEGISLPKRIIQ 332 (362)
Q Consensus 311 s~VQi~Tali~~Gp~~~~~I~~ 332 (362)
+.|-++-|-.+-|+..++.+..
T Consensus 123 ~~vKlFPA~~~Gg~~~lkal~~ 144 (196)
T pfam01081 123 TRFKFFPAEASGGVPAIKALAG 144 (196)
T ss_pred CEEEECCCHHCCCHHHHHHHHC
T ss_conf 9899787310184999999857
No 243
>PRK08904 consensus
Probab=96.51 E-value=0.028 Score=35.11 Aligned_cols=135 Identities=12% Similarity=0.063 Sum_probs=79.3
Q ss_pred HHHHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 8776555420-675526983033365322110000234321111224445565531268851786505777748889999
Q gi|254780434|r 151 LDYVSGIRLF-FTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIA 229 (362)
Q Consensus 151 ~dy~~~~~~~-~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia 229 (362)
++-..+++.+ ..+...+|+-+..|+.. +.+ ..+.+ .... +.+-..-=++ .+-+
T Consensus 22 ~~a~~~a~al~~~Gi~~iEiTlrtp~a~--------~~i----~~l~~--------~~p~--~~vGaGTVl~----~e~~ 75 (207)
T PRK08904 22 STAVDLSRALVEGGIPTLEITLRTPVGL--------DAI----RLIAK--------EVPN--AIVGAGTVTN----PEQL 75 (207)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHH--------HHH----HHHHH--------HCCC--CEEEEEECCC----HHHH
T ss_conf 9999999999987998899957991399--------999----99998--------6898--7685531368----9999
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 98764498299980665553234577544632211356454246899999997408974899967889999999999839
Q gi|254780434|r 230 VEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAG 309 (362)
Q Consensus 230 ~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aG 309 (362)
+.+.++|++.++.-++ . ...+...+ .. ++| -.=|+.|+.++...+.+|
T Consensus 76 ~~a~~aGA~FiVSP~~------------~---------------~~v~~~a~-~~--~i~--~iPGv~TpsEi~~A~~~G 123 (207)
T PRK08904 76 KAVEDAGAVFAISPGL------------H---------------ESLAKAGH-NS--GIP--LIPGVATPGEIQLALEHG 123 (207)
T ss_pred HHHHHCCCCEEECCCC------------C---------------HHHHHHHH-HC--CCC--EECCCCCHHHHHHHHHCC
T ss_conf 9999849999984899------------8---------------99999999-83--997--657869999999999879
Q ss_pred CCEEEECHHHHCCCHHHHHHHHH----------------HHHHHHHHCCC
Q ss_conf 99754527877069789999999----------------99999998389
Q gi|254780434|r 310 ANLIQLYSAMIYEGISLPKRIIQ----------------GLSDFLNKENE 343 (362)
Q Consensus 310 As~VQi~Tali~~Gp~~~~~I~~----------------~L~~~l~~~G~ 343 (362)
++.|-++-|-.+.|+..++.+.. .+.+||+..++
T Consensus 124 ~~~vK~FPA~~~GG~~~lkal~~pfp~i~~~pTGGV~~~N~~~yl~~~~v 173 (207)
T PRK08904 124 IDTLKLFPAEVVGGKAMLKALYGPYADVRFCPTGGISLATAPEYLALPNV 173 (207)
T ss_pred CCEEEECCCHHCCCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCE
T ss_conf 99899776222088999998746599980886589898789999818984
No 244
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=96.48 E-value=0.046 Score=33.68 Aligned_cols=198 Identities=15% Similarity=0.167 Sum_probs=87.2
Q ss_pred CCCEEECCC-CCCCH--HHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHH-
Q ss_conf 997485346-88867--79888740-36752410200136878998862688425554100002477777889998764-
Q gi|254780434|r 55 SNPLGMAAG-YDKNA--EVPIELLK-LGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSK- 129 (362)
Q Consensus 55 ~nPiglAaG-~dk~~--~~~~~l~~-~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~- 129 (362)
.-||- ..| .|.++ +.++.+.+ .|.-++.+..-|-+- +.+ .-.....+.+...+
T Consensus 12 ~TPF~-~dg~iD~~~l~~~v~~~i~~~Gv~Gi~~~GstGE~---------~~L------------s~~Er~~l~~~~~~~ 69 (294)
T PRK04147 12 LTPFD-EDGQIDEQGLRQLVRFNIEKQGIDGLYVGGSTGEA---------FLL------------STEERKQVLEIVAEE 69 (294)
T ss_pred ECCCC-CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCH---------HHC------------CHHHHHHHHHHHHHH
T ss_conf 36789-68596999999999999987799899979513164---------348------------999999999999998
Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 10001210001104542467887765554206755269830333653221100002343211112244455655312688
Q gi|254780434|r 130 IQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKF 209 (362)
Q Consensus 130 ~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~ 209 (362)
...+.||++.++.+. +.+. .+..+.++++ ++|++-+ ..|..-. ...+.+......+. ...+
T Consensus 70 ~~~r~pvi~gv~~~s-t~~a-i~~a~~a~~~--Gad~v~~--~pP~y~~----~~~~~i~~~f~~va---------~a~~ 130 (294)
T PRK04147 70 AKGKIKLIAQVGSVN-TAEA-QELAKYATEL--GYDAISA--VTPFYYP----FSFEEICDYYREII---------DSAD 130 (294)
T ss_pred CCCCCEEEECCCCCC-HHHH-HHHHHHHHHC--CCCEEEE--CCCCCCC----CCHHHHHHHHHHHH---------HHCC
T ss_conf 189732763478888-8999-9999999975--9988997--2786778----99899999999998---------5049
Q ss_pred CEEEEECCC-----CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 517865057-----777488899999876449829998066555323457754463221135645424689999999740
Q gi|254780434|r 210 VPIFLKISP-----DLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRV 284 (362)
Q Consensus 210 ~Pi~vKLsP-----d~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~ 284 (362)
+||++==-| +++.+.+.+++ ..-++.|+=- + ||. ...+.++++..
T Consensus 131 ~pi~iYn~P~~tg~~~~~~~l~~L~---~~~~i~giK~--s-------------------~~d------~~~~~~i~~~~ 180 (294)
T PRK04147 131 NPMIVYNIPALTGVNLSLDQFNELF---TLPKIIGVKQ--T-------------------AGD------LYQLERIRKAF 180 (294)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHH---CCCCEEEEEE--C-------------------CCC------HHHHHHHHHHC
T ss_conf 9778875675416788999999995---6899889992--8-------------------899------99999999748
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHH
Q ss_conf 8974899967889999999999839997545278770697899999
Q gi|254780434|r 285 GPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRI 330 (362)
Q Consensus 285 ~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I 330 (362)
++.. + -+| +..-..+.+.+||+-+--+++-++ |..+.+|
T Consensus 181 ~~~~-v-~~G---~d~~~~~~~~~Ga~G~i~~~~n~~--p~~~~~l 219 (294)
T PRK04147 181 PDKL-I-YNG---FDEMFLSGLLAGADGAIGSTYNVN--GWRARQI 219 (294)
T ss_pred CCEE-E-EEC---CHHHHHHHHHCCCCEEEECHHHHH--HHHHHHH
T ss_conf 9849-9-958---658799999879969994479867--8999999
No 245
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=96.48 E-value=0.083 Score=31.97 Aligned_cols=167 Identities=14% Similarity=0.086 Sum_probs=93.7
Q ss_pred HHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99987641000121000110454246788776555420675526983033365322110000234321111224445565
Q gi|254780434|r 123 VFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEE 202 (362)
Q Consensus 123 ~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~ 202 (362)
..+.|++.+++.+|.+-+ +..+++... .++ .+..+||++.+-=.. ..+.+...+... +.
T Consensus 46 ~V~~lr~~~p~k~I~aDl-K~~D~g~~e---a~~--a~~aGAd~vtV~g~a----------~~~Ti~~~~~~A---~~-- 104 (216)
T PRK13306 46 AVRVLRALYPDKIIVADT-KIADAGKIL---AKM--AFEAGADWVTVICAA----------HIPTIKAALKVA---KE-- 104 (216)
T ss_pred HHHHHHHHCCCCEEEEEE-EECCCCHHH---HHH--HHHCCCCEEEEECCC----------CHHHHHHHHHHH---HH--
T ss_conf 999999878999799975-323653899---999--997289889995668----------979999999999---98--
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 53126885178650577774888999998764498299980665553234577544632211356454246899999997
Q gi|254780434|r 203 KIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQ 282 (362)
Q Consensus 203 ~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~ 282 (362)
..+.+++-|.-..+ .+.++...+.|++.+++ .+. ++ . +.+|....+..+..+++++
T Consensus 105 -----~g~~v~vdl~~~~~----~e~a~~~~~lgv~~~i~-H~~--~D--------~---~~~g~~~~~~~~~~ik~l~- 160 (216)
T PRK13306 105 -----FNGEIQIELYGNWT----WEQAQQWRDAGIQQVIY-HRS--RD--------A---ELAGVAWGEKDLNKVKKLS- 160 (216)
T ss_pred -----HCCEEEEEEECCCC----HHHHHHHHHCCCCEEEE-ECC--HH--------H---HHCCCCCCHHHHHHHHHHH-
T ss_conf -----09836999737877----88899999769987887-603--22--------4---4246788877899999976-
Q ss_pred HCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-CCH-HHHHHHHHHHHHH
Q ss_conf 408974899967889999999999839997545278770-697-8999999999999
Q gi|254780434|r 283 RVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY-EGI-SLPKRIIQGLSDF 337 (362)
Q Consensus 283 ~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~-~Gp-~~~~~I~~~L~~~ 337 (362)
+..+.|--.||| +.+++.++...|++.|=++++..- +.| ...++|.++++++
T Consensus 161 --~~~~~vaVaGGI-~~~~~~~~~~~~~~ivIVGraIt~a~dP~~aA~~i~~~I~~~ 214 (216)
T PRK13306 161 --DMGFKVSVTGGI-VPEDLKLFKGIPIKTFIAGRAIRGAKDPAEAARAFKDEIAKY 214 (216)
T ss_pred --CCCCEEEECCCC-CHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf --369829985998-989999986279989998852358999999999999999986
No 246
>PRK08104 consensus
Probab=96.38 E-value=0.094 Score=31.61 Aligned_cols=136 Identities=13% Similarity=0.119 Sum_probs=80.7
Q ss_pred HHHHHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 88776555420-67552698303336532211000023432111122444556553126885178650577774888999
Q gi|254780434|r 150 ILDYVSGIRLF-FTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDI 228 (362)
Q Consensus 150 ~~dy~~~~~~~-~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~i 228 (362)
.++-..+++.+ ..+...+|+-+..|+.. +.+ ..+.+ .... +.+-..-=++ .+-
T Consensus 26 ~~~a~~la~al~~gGi~~iEiTlrt~~a~--------~~I----~~l~~--------~~p~--~~vGaGTV~~----~e~ 79 (212)
T PRK08104 26 LEHAVPLAKALVAGGVRVLEVTLRTPCAL--------EAI----RAIAK--------EVPE--AIVGAGTVLN----PQQ 79 (212)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHH--------HHH----HHHHH--------HCCC--CEEEEEECCC----HHH
T ss_conf 99999999999987998899968881499--------999----99998--------6898--5685420267----999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 99876449829998066555323457754463221135645424689999999740897489996788999999999983
Q gi|254780434|r 229 AVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMA 308 (362)
Q Consensus 229 a~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~a 308 (362)
++.+.++|++.++.-++ ...++...+ .. ++|. .=|++|+.++...+.+
T Consensus 80 ~~~ai~aGA~FiVSP~~---------------------------~~~v~~~a~-~~--~i~~--iPGv~TpsEi~~A~~~ 127 (212)
T PRK08104 80 LAEVTEAGAQFAISPGL---------------------------TEELLKAAT-EG--TIPL--IPGISTVSELMLGMDY 127 (212)
T ss_pred HHHHHHCCCCEEECCCC---------------------------CHHHHHHHH-HC--CCCE--ECCCCCHHHHHHHHHC
T ss_conf 99999859999984899---------------------------999999999-82--9976--5676999999999987
Q ss_pred CCCEEEECHHHHCCCHHHHHHHH----------------HHHHHHHHHCCC
Q ss_conf 99975452787706978999999----------------999999998389
Q gi|254780434|r 309 GANLIQLYSAMIYEGISLPKRII----------------QGLSDFLNKENE 343 (362)
Q Consensus 309 GAs~VQi~Tali~~Gp~~~~~I~----------------~~L~~~l~~~G~ 343 (362)
||+.|-++-|-.+-|+..++.+. +-+.+||+..++
T Consensus 128 G~~~vKlFPA~~~gG~~~lkal~~p~p~~~f~ptGGV~~~N~~~yl~~~~v 178 (212)
T PRK08104 128 GLTEFKFFPAEANGGVKALQAISGPFSQIRFCPTGGITPANYRDYLALKSV 178 (212)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCE
T ss_conf 999799787621374999999855589981896489898899999807987
No 247
>pfam00834 Ribul_P_3_epim Ribulose-phosphate 3 epimerase family. This enzyme catalyses the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate.
Probab=96.38 E-value=0.095 Score=31.59 Aligned_cols=195 Identities=14% Similarity=0.224 Sum_probs=112.7
Q ss_pred CEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 74853468886779888740367524102001368789988626884255541000024777778899987641000121
Q gi|254780434|r 57 PLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPI 136 (362)
Q Consensus 57 PiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi 136 (362)
|=+++|-+.+-.+.++++...|+..+-+ ..-|+-.+..++|. . .+++.+++. .+.|+
T Consensus 4 pSil~ad~~~l~~~i~~l~~~g~d~iHi------------------DimDG~FVpn~t~g---~-~~i~~ir~~-t~~~~ 60 (201)
T pfam00834 4 PSLLSADFAHLGEEIKAVENAGADWLHV------------------DVMDGHFVPNLTIG---P-LVVEALRPL-TELPL 60 (201)
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCEEEE------------------ECCCCCCCCCCCCC---H-HHHHHHHHC-CCCCE
T ss_conf 6574168999999999999769998998------------------27679727755558---7-799999863-89963
Q ss_pred CCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 00011045424678877655542067552698303336532211000023432111122444556553126885178650
Q gi|254780434|r 137 GINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKI 216 (362)
Q Consensus 137 ~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKL 216 (362)
=+-++...+ ++|.+.+.. .++|++.+-+-+. +...+.+..+++. . +-..+-|
T Consensus 61 DvHLMv~~P-----~~~i~~~~~--~g~d~i~~H~E~~-----------~~~~~~i~~ik~~--------g--~k~GlAl 112 (201)
T pfam00834 61 DVHLMVEEP-----DRIIPDFAE--AGADIISFHAEAS-----------DHPHRTIQLIKEA--------G--AKAGLVL 112 (201)
T ss_pred EEEEEEECH-----HHHHHHHHH--CCCCEEEECHHHH-----------HCHHHHHHHHHHC--------C--CEEEEEE
T ss_conf 899998377-----663999987--3998899754441-----------3799999999864--------9--7268885
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCCEEEEEE
Q ss_conf 57777488899999876449829998066555323457754463221135645424689999999740---897489996
Q gi|254780434|r 217 SPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRV---GPKIAIIGT 293 (362)
Q Consensus 217 sPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~---~~~i~IIg~ 293 (362)
.|+.+.+.+..++. -+|.+.+- | . .. |.+|....+.++.-|+++|+.. +.++.|-.-
T Consensus 113 nP~T~~~~l~~~l~-----~iD~VLvM-t-----------V--~P-Gf~GQ~f~~~~l~KI~~lr~~~~~~~~~~~I~vD 172 (201)
T pfam00834 113 NPATPLDAIEYLLD-----DLDLVLLM-S-----------V--NP-GFGGQSFIPSVLPKIRKVRKMIDEGGLDTLIEVD 172 (201)
T ss_pred CCCCCCHHHHHHHH-----HCCEEEEE-E-----------E--CC-CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 69986028887674-----27989998-8-----------6--68-9887645677999999999999826998079998
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECHHHHCCCH
Q ss_conf 7889999999999839997545278770697
Q gi|254780434|r 294 GGISSTKDALDKIMAGANLIQLYSAMIYEGI 324 (362)
Q Consensus 294 GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp 324 (362)
|||.. +.+.+...+|||.+=++|++ |.-|
T Consensus 173 GGIn~-~ti~~l~~~Gad~~V~GSai-F~sp 201 (201)
T pfam00834 173 GGVNL-DNIPQIAEAGADVLVAGSAV-FGAP 201 (201)
T ss_pred CCCCH-HHHHHHHHCCCCEEEECCEE-CCCC
T ss_conf 98889-99999998799999978002-4598
No 248
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=96.36 E-value=0.097 Score=31.52 Aligned_cols=199 Identities=20% Similarity=0.252 Sum_probs=114.4
Q ss_pred EECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 85346888677988874036752410200136878998862688425554100002477777889998764100012100
Q gi|254780434|r 59 GMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGI 138 (362)
Q Consensus 59 glAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~v 138 (362)
.++|-+..-.+.++++...|+..+-+ ..-|+-.+..++|. . .+++.+++.. +.|+=|
T Consensus 6 il~ad~~~l~~~i~~~~~~g~d~lHi------------------DimDG~Fvpn~t~g---~-~~v~~i~~~t-~~~~Dv 62 (211)
T cd00429 6 ILSADFANLGEELKRLEEAGADWIHI------------------DVMDGHFVPNLTFG---P-PVVKALRKHT-DLPLDV 62 (211)
T ss_pred HHHCCHHHHHHHHHHHHHCCCCEEEE------------------ECCCCCCCCCCCCC---H-HHHHHHHHHC-CCCEEE
T ss_conf 53179999999999999769998999------------------57579727866759---8-9999998757-997058
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 01104542467887765554206755269830333653221100002343211112244455655312688517865057
Q gi|254780434|r 139 NLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISP 218 (362)
Q Consensus 139 sI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsP 218 (362)
-++...+ +.|.+.+... ++|++.+-+-+- ....+.+..+++. . +-..+-|.|
T Consensus 63 HLMv~~P-----~~~i~~~~~~--g~d~I~~H~E~~-----------~~~~~~i~~ik~~--------g--~~~Glal~p 114 (211)
T cd00429 63 HLMVENP-----ERYIEAFAKA--GADIITFHAEAT-----------DHLHRTIQLIKEL--------G--MKAGVALNP 114 (211)
T ss_pred EEEECCH-----HHHHHHHHHH--CCCEEEECCCCC-----------CCHHHHHHHHHHC--------C--CCCEEEECC
T ss_conf 9987188-----7769999970--998899864322-----------0899999999973--------9--872357548
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC---CCEEEEEECC
Q ss_conf 7774888999998764498299980665553234577544632211356454246899999997408---9748999678
Q gi|254780434|r 219 DLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVG---PKIAIIGTGG 295 (362)
Q Consensus 219 d~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~---~~i~IIg~GG 295 (362)
+.+.+.+..++.. +|.+.+- | . + -|.+|....+.++..|+++++... .++.|.--||
T Consensus 115 ~T~~~~l~~~l~~-----~D~vliM-t-----------V--~-PGf~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGG 174 (211)
T cd00429 115 GTPVEVLEPYLDE-----VDLVLVM-S-----------V--N-PGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGG 174 (211)
T ss_pred CCCHHHHHHHHHH-----HCEEEEE-E-----------E--C-CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 9998999999975-----1522798-7-----------4--6-8878875456799999999999986499859999678
Q ss_pred CCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHH
Q ss_conf 89999999999839997545278770697899999
Q gi|254780434|r 296 ISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRI 330 (362)
Q Consensus 296 I~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I 330 (362)
|.. +.+-+...+|||.+=++|+ +|+.+...+.|
T Consensus 175 I~~-~~i~~l~~~Gad~~V~GS~-iF~~~d~~~~i 207 (211)
T cd00429 175 INL-ETIPLLAEAGADVLVAGSA-LFGSDDYAEAI 207 (211)
T ss_pred CCH-HHHHHHHHCCCCEEEECHH-HHCCCCHHHHH
T ss_conf 598-9999999859999997937-75899999999
No 249
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.35 E-value=0.047 Score=33.66 Aligned_cols=127 Identities=10% Similarity=0.019 Sum_probs=73.9
Q ss_pred HHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 87765554206-75526983033365322110000234321111224445565531268851786505777748889999
Q gi|254780434|r 151 LDYVSGIRLFF-TIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIA 229 (362)
Q Consensus 151 ~dy~~~~~~~~-~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia 229 (362)
++-..+++.+. .+..++|+-+.+||... .+. .+..... ..... +.+-..--++. +-+
T Consensus 28 e~a~~~a~aL~~gGi~~iEiTlrt~~a~~--------~i~----~l~~~~~----~~~p~--~~iGaGTVl~~----~~~ 85 (223)
T PRK07114 28 EVAKKVVKACYDGGVRAFEFTNRGDFAHE--------VFG----ELVKYAA----KECPE--MILGVGSIVDA----ATA 85 (223)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHH--------HHH----HHHHHHH----HHCCC--CEEEEECCCCH----HHH
T ss_conf 99999999999889988999588965899--------999----9999998----66898--08965518899----999
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 98764498299980665553234577544632211356454246899999997408974899967889999999999839
Q gi|254780434|r 230 VEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAG 309 (362)
Q Consensus 230 ~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aG 309 (362)
+.+.++|++.++-=++ ....+.... .. ++| -.=|+.|+.++...+.+|
T Consensus 86 ~~a~~aGA~FiVSP~~---------------------------~~~v~~~~~-~~--~~~--~iPGv~TptEi~~A~~~G 133 (223)
T PRK07114 86 ALYIQLGANFVVGPLF---------------------------NEDIAKVCN-RR--KIP--YSPGCGSVSEIGFAEELG 133 (223)
T ss_pred HHHHHCCCCEEECCCC---------------------------CHHHHHHHH-HC--CCC--CCCCCCCHHHHHHHHHCC
T ss_conf 9999859989999999---------------------------999999999-83--997--537319999999999879
Q ss_pred CCEEEECHHHHCCCHHHHHHHHH
Q ss_conf 99754527877069789999999
Q gi|254780434|r 310 ANLIQLYSAMIYEGISLPKRIIQ 332 (362)
Q Consensus 310 As~VQi~Tali~~Gp~~~~~I~~ 332 (362)
|+.|-++-|- .-||..++.+..
T Consensus 134 ~~~vK~FPa~-~~G~~~lkal~~ 155 (223)
T PRK07114 134 CEIVKIFPGD-VYGPEFVKAIKG 155 (223)
T ss_pred CCEEEECCCC-CCCHHHHHHHHC
T ss_conf 9979889732-359999999846
No 250
>PRK06857 consensus
Probab=96.34 E-value=0.099 Score=31.47 Aligned_cols=145 Identities=10% Similarity=0.154 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 88999876410001210001104542467887765554206-75526983033365322110000234321111224445
Q gi|254780434|r 121 HTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFF-TIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTR 199 (362)
Q Consensus 121 ~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~-~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~ 199 (362)
+.+++.|++.+ =.||.. + ++ .+|...+++.+. .+...+|+-+..|+.. +.+ ..+.+.
T Consensus 3 ~~ii~~l~~~~-iipVir-~----~~---~~~a~~~~~al~~gGi~~iEiTlrt~~a~--------~~I----~~l~~~- 60 (209)
T PRK06857 3 EQIIEKLRALK-VVPVIA-I----DD---AEDILPLAKVLAENGLPVAEITFRSAAAA--------EAI----RLLREA- 60 (209)
T ss_pred HHHHHHHHHCC-EEEEEE-C----CC---HHHHHHHHHHHHHCCCCEEEEECCCCCHH--------HHH----HHHHHH-
T ss_conf 99999999799-799997-5----99---99999999999987998899958993299--------999----999975-
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 56553126885178650577774888999998764498299980665553234577544632211356454246899999
Q gi|254780434|r 200 EEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAK 279 (362)
Q Consensus 200 ~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~ 279 (362)
... +.+-..-=++ .+-++.+.++|++.++--++ ...++..
T Consensus 61 -------~p~--~~vGaGTV~~----~e~~~~a~~aGA~FiVSP~~---------------------------~~~v~~~ 100 (209)
T PRK06857 61 -------YPD--MLIGAGTVLT----PEQVDAAKEAGADFIVSPGF---------------------------NPNTVKY 100 (209)
T ss_pred -------CCC--CEEEEEECCC----HHHHHHHHHCCCCEEECCCC---------------------------CHHHHHH
T ss_conf -------899--4899993767----99999999839999990899---------------------------9999999
Q ss_pred HHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHH
Q ss_conf 99740897489996788999999999983999754527877069789999999
Q gi|254780434|r 280 IRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQ 332 (362)
Q Consensus 280 i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~ 332 (362)
.++ . ++| -.=|+.|+.++...+.+||+.|-++-+-..-|+..++.+..
T Consensus 101 a~~-~--~i~--~iPGv~TpsEi~~A~~~G~~~vKlFPA~~~gG~~~lkal~~ 148 (209)
T PRK06857 101 CQQ-L--NIP--IVPGVNNPSLVEQALEMGLTTLKFFPAEASGGVNMLKALLA 148 (209)
T ss_pred HHH-C--CCC--EECCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHC
T ss_conf 997-4--996--54787999999999987999899786621266999999865
No 251
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=96.34 E-value=0.092 Score=31.66 Aligned_cols=84 Identities=20% Similarity=0.201 Sum_probs=60.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 17865057777488899999876449829998066555323457754463221135645424689999999740897489
Q gi|254780434|r 211 PIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAI 290 (362)
Q Consensus 211 Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~I 290 (362)
|.|..|=+..+.+...++++.++++|+.+++++= |- +.. |. ..+-+-|+++++.++ .|+
T Consensus 117 ~~wfQLY~~~d~~~~~~li~rA~~aG~~al~lTv---D~-----p~~--------g~---R~~w~~i~~l~~~~~--~p~ 175 (299)
T cd02809 117 PRWFQLYVPRDREITEDLLRRAEAAGYKALVLTV---DT-----PVL--------GR---RLTWDDLAWLRSQWK--GPL 175 (299)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC---CC-----CCC--------CC---CCCHHHHHHHHHHCC--CCE
T ss_conf 8467764369999999999999985999899970---58-----987--------88---799999999998669--987
Q ss_pred EEECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 99678899999999998399975452
Q gi|254780434|r 291 IGTGGISSTKDALDKIMAGANLIQLY 316 (362)
Q Consensus 291 Ig~GGI~s~~Da~e~l~aGAs~VQi~ 316 (362)
|- =||.+++||..-..+|||.+.|.
T Consensus 176 i~-KGi~~~~DA~~a~~~G~dgI~VS 200 (299)
T cd02809 176 IL-KGILTPEDALRAVDAGADGIVVS 200 (299)
T ss_pred EE-ECCCCHHHHHHHHHCCCCEEEEC
T ss_conf 99-72788999999998599889972
No 252
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=96.30 E-value=0.071 Score=32.43 Aligned_cols=189 Identities=16% Similarity=0.162 Sum_probs=91.4
Q ss_pred HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHH-HHCCCCCCEEECCCCC
Q ss_conf 779888740367524102001368789988626884255541000024777778899987641-0001210001104542
Q gi|254780434|r 68 AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKI-QPTSPIGINLGANKDS 146 (362)
Q Consensus 68 ~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~-~~~~pi~vsI~~~~~s 146 (362)
.+.++.+.+.|..++.+..-|-+- +.+ .-.....+.+...+. ....|+++.++.++
T Consensus 21 ~~~i~~l~~~Gv~gi~v~G~tGE~---------~~L------------s~~Er~~l~~~~~~~~~~~~pvi~gv~~~s-- 77 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVLGTTGEA---------PTL------------TDEERKEVIEAVVEAVAGRVPVIAGVGANS-- 77 (281)
T ss_pred HHHHHHHHHCCCCEEEECEECCCH---------HHC------------CHHHHHHHHHHHHHHCCCCCEEEEECCCCC--
T ss_conf 999999997699989968545243---------138------------999999999999998089850999578788--
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-----C
Q ss_conf 46788776555420675526983033365322110000234321111224445565531268851786505777-----7
Q gi|254780434|r 147 KDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDL-----S 221 (362)
Q Consensus 147 ~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~-----~ 221 (362)
-+...++.+.++++ ++|++-+ ..|.... .+.+.+.+....+.+ ...+||++=-.|.. +
T Consensus 78 ~~~~~~~a~~a~~~--Gad~i~v--~pP~y~~----~~~~~i~~~~~~i~~---------~~~~pi~iYn~P~~~g~~l~ 140 (281)
T cd00408 78 TREAIELARHAEEA--GADGVLV--VPPYYNK----PSQEGIVAHFKAVAD---------ASDLPVILYNIPGRTGVDLS 140 (281)
T ss_pred HHHHHHHHHHHHHC--CCCEEEE--CCCCCCC----CCHHHHHHHHHHHHH---------CCCCCEEEEECCCCCCCCCC
T ss_conf 99999999999975--9998998--7997778----999999999999985---------55997799727753167768
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH
Q ss_conf 48889999987644982999806655532345775446322113564542468999999974089748999678899999
Q gi|254780434|r 222 EEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKD 301 (362)
Q Consensus 222 ~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~D 301 (362)
.+.+.+++ + ...|+.+-- .. | ....+.++.+..++++.++. | ....
T Consensus 141 ~~~l~~L~----~--~~nv~giK~---------s~---------~------d~~~~~~~~~~~~~~~~v~~-G---~d~~ 186 (281)
T cd00408 141 PETIARLA----E--HPNIVGIKD---------SS---------G------DLDRLTRLIALLGPDFAVLS-G---DDDL 186 (281)
T ss_pred HHHHHHHH----C--CCCEEEEEC---------CC---------C------CHHHHHHHHHHCCCCCEEEC-C---CHHH
T ss_conf 99999984----8--999899984---------88---------9------99999999997599705626-9---6688
Q ss_pred HHHHHHCCCCEEEECHHHHCCCHHHHHHHHH
Q ss_conf 9999983999754527877069789999999
Q gi|254780434|r 302 ALDKIMAGANLIQLYSAMIYEGISLPKRIIQ 332 (362)
Q Consensus 302 a~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~ 332 (362)
..+.+.+||+-...+++-++ |..+.++.+
T Consensus 187 ~~~~l~~G~~G~i~~~~n~~--P~~~~~l~~ 215 (281)
T cd00408 187 LLPALALGADGAISGAANVA--PKLAVALYE 215 (281)
T ss_pred HHHHHHCCCCCEEECHHHCC--HHHHHHHHH
T ss_conf 99998728981440242316--999999999
No 253
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.26 E-value=0.11 Score=31.18 Aligned_cols=213 Identities=11% Similarity=0.031 Sum_probs=115.5
Q ss_pred CEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 74853468886779888740367524102001368789988626884255541000024777778899987641000121
Q gi|254780434|r 57 PLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPI 136 (362)
Q Consensus 57 PiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi 136 (362)
|=+++|-+..-.+.++++.+.|+-++-+- .-|+-.+..++|. . .++++++. ..++
T Consensus 17 pSIL~aD~~~L~~ei~~l~~~g~d~lHiD------------------IMDG~FVPNitfg---~-~~v~~l~~---~~~~ 71 (235)
T PRK08091 17 VGILAGQWLALHRYLQQLEALNQPLLHFD------------------IMDGQFSPQFTVG---P-WAVGQFPQ---TFIK 71 (235)
T ss_pred HHHHHHCHHHHHHHHHHHHHCCCCEEEEC------------------CCCCCCCCCCCCC---H-HHHHHHCC---CCCC
T ss_conf 99875189999999999997799999981------------------8588767843228---9-99997374---9997
Q ss_pred CCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE--EE
Q ss_conf 0001104542467887765554206755269830333653221100002343211112244455655312688517--86
Q gi|254780434|r 137 GINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPI--FL 214 (362)
Q Consensus 137 ~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi--~v 214 (362)
=|-++... .++|.+.+. ..++|++.+-+=+. ..+...+..++..... ......++ .+
T Consensus 72 DvHLMV~~-----P~~~i~~~~--~aGad~it~H~Ea~-----------~~~~~~i~~i~~~~~~---~~~~~~~~~~Gl 130 (235)
T PRK08091 72 DVHLMVAD-----QWTVAKACV--KAGAHCITLQAEGD-----------IHLHHTLSWLGQQTVP---VIGGEMPVLRGI 130 (235)
T ss_pred CEEEEECC-----HHHHHHHHH--HCCCCEEEECCCCC-----------CCHHHHHHHHHHHCCH---HHHHHCCCCCEE
T ss_conf 26643388-----899999999--75998999754555-----------5889999999983420---222220750138
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCCEEEE
Q ss_conf 5057777488899999876449829998066555323457754463221135645424689999999740---8974899
Q gi|254780434|r 215 KISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRV---GPKIAII 291 (362)
Q Consensus 215 KLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~---~~~i~II 291 (362)
-|.|+.+.+.+..+... +|.+.+- ... . |.+|..-.+-++.-|+++++.. +.+..|-
T Consensus 131 AlnP~Tpve~l~~~L~~-----vD~VLvM------------tV~--P-GfgGQ~fi~~~l~KI~~l~~~~~~~~~~~~I~ 190 (235)
T PRK08091 131 SLCPATPLDVLIPYLSD-----VDVIQLL------------TLD--P-RYGSKMRSSDLHERVAQLLCLLGDKREGKLIV 190 (235)
T ss_pred EECCCCCHHHHHHHHHH-----CCEEEEE------------EEC--C-CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 97999988999998705-----3999998------------766--8-98888678789999999999999649991599
Q ss_pred EECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 96788999999999983999754527877069789999999999999
Q gi|254780434|r 292 GTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFL 338 (362)
Q Consensus 292 g~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l 338 (362)
--|||.. +.+-+...||||.+=.+|+ +|+.+. +.+..+.|++.|
T Consensus 191 VDGGI~~-~ti~~~~~aGad~~V~GS~-iF~~~d-~~e~i~~lk~l~ 234 (235)
T PRK08091 191 IDGSMTQ-DQLPSLIAQGIDWVVSGSA-LFSDDR-LVENLRSWKAMF 234 (235)
T ss_pred EECCCCH-HHHHHHHHCCCCEEEECHH-HCCCCC-HHHHHHHHHHHH
T ss_conf 8489898-8899999839999997824-337999-999999999852
No 254
>TIGR01919 hisA-trpF bifunctional HisA/TrpF protein; InterPro: IPR010188 This entry represents a bifunctional protein possessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities . Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC Gram-positive). The enzyme is closely related to the monofunctional HisA proteins and in Actinobacteria, the classical monofunctional TrpF is generally absent.; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0004640 phosphoribosylanthranilate isomerase activity, 0000105 histidine biosynthetic process, 0000162 tryptophan biosynthetic process, 0005737 cytoplasm.
Probab=96.19 E-value=0.033 Score=34.64 Aligned_cols=85 Identities=21% Similarity=0.302 Sum_probs=65.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 77774888999998764498299980665553234577544632211356454246899999997408974899967889
Q gi|254780434|r 218 PDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGIS 297 (362)
Q Consensus 218 Pd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~ 297 (362)
+...--++.++.+.+-..|+.-++++.-+ + -|-||||.| .+++++.+++ +=|||++|||+
T Consensus 147 W~~dGGDLwevl~~LDS~GCsRfVVTDv~--K-----------DG~lsGPN~-----~LL~eVA~~T--DA~v~ASGGiS 206 (246)
T TIGR01919 147 WESDGGDLWEVLERLDSEGCSRFVVTDVA--K-----------DGTLSGPNV-----ELLAEVAERT--DAPVVASGGIS 206 (246)
T ss_pred CCCCCCCHHHHHHHHCCCCCCCEEEEECC--C-----------CCCCCCCCH-----HHHHHHHHHC--CCCEEEECCCC
T ss_conf 55788628999987434885403785012--3-----------786678528-----9999988622--88478717756
Q ss_pred CHHHHHH---HHHCCCCEEEECHHHHCC
Q ss_conf 9999999---998399975452787706
Q gi|254780434|r 298 STKDALD---KIMAGANLIQLYSAMIYE 322 (362)
Q Consensus 298 s~~Da~e---~l~aGAs~VQi~Tali~~ 322 (362)
+-+|..+ +-..|-+-+-|+-++.-+
T Consensus 207 ~LdDl~~i~~l~~~Gvds~I~GKaLY~~ 234 (246)
T TIGR01919 207 KLDDLRAIAKLAEEGVDSAIVGKALYAR 234 (246)
T ss_pred CHHHHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf 1889999999975588657620255532
No 255
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.18 E-value=0.022 Score=35.92 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=25.3
Q ss_pred CCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCC
Q ss_conf 599748534688867798887403675241020013
Q gi|254780434|r 54 LSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTP 89 (362)
Q Consensus 54 ~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~ 89 (362)
..-|+-++.|. ++.+.++.++++|+.-|+++|...
T Consensus 72 ~~~piqvGGGI-rs~e~i~~~l~~Ga~kViigt~a~ 106 (228)
T PRK04128 72 TGLKVQVGGGF-RTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred CCCEEEECCCC-CCHHHHHHHHHCCCCEEEECCCCC
T ss_conf 49628973860-779999999968997698145125
No 256
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=96.12 E-value=0.047 Score=33.63 Aligned_cols=229 Identities=17% Similarity=0.202 Sum_probs=117.1
Q ss_pred CCCEEEECCEECCC-CEEECCCCC-C-CHHH----HHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCC
Q ss_conf 63116888733599-748534688-8-6779----888740367524102001368789988626884255541000024
Q gi|254780434|r 43 PRLNTKVAGISLSN-PLGMAAGYD-K-NAEV----PIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGF 115 (362)
Q Consensus 43 ~~L~~~~~Gl~~~n-PiglAaG~d-k-~~~~----~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl 115 (362)
.+-.+++.|++|-. .+.+-||+. - +-+. .+.+.+.|....--|- .+||+ + | +.|
T Consensus 78 ~~t~i~v~~~~iGg~~~~iiAGPCsvEs~eq~~~~A~~vk~~ga~~lRgGa--~KPRT-s--P--------------ysF 138 (335)
T PRK08673 78 EPTIVKVGDVEIGGGKPVVIAGPCSVESEEQILEIARAVKEAGAQILRGGA--FKPRT-S--P--------------YSF 138 (335)
T ss_pred CCCEEEECCEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEECCCC--CCCCC-C--C--------------CCC
T ss_conf 897799799998898536996178678799999999999977996880666--57899-9--8--------------541
Q ss_pred CCCCHHHHHHHHHHH--HHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 777778899987641--000121000110454246788776555420675526983033365322110000234321111
Q gi|254780434|r 116 NNAGYHTVFSRLSKI--QPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLI 193 (362)
Q Consensus 116 ~N~G~~~~~~~l~~~--~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~ 193 (362)
+-.|.+ -++-|++. ..+.|+..-|+-. . -++.+..++|.+-| |-|.+|+.+.|.++
T Consensus 139 qGlg~e-GL~~L~~~~~e~GlpvvTEV~~~-------~----~ve~v~~~vDilQI--------GARnmqN~~LL~ev-- 196 (335)
T PRK08673 139 QGLGEE-GLKLLAEAREETGLPIVTEVMDP-------R----DVELVAEYADILQI--------GARNMQNFDLLKEV-- 196 (335)
T ss_pred CCCCHH-HHHHHHHHHHHHCCCEEEEECCH-------H----HHHHHHHHCCEEEE--------CHHHHCCHHHHHHH--
T ss_conf 455166-99999999998699528996689-------9----99999964979998--------91550599999999--
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 22444556553126885178650577774888999998764498299980665553234577544632211356454246
Q gi|254780434|r 194 HVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKS 273 (362)
Q Consensus 194 ~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~a 273 (362)
..+.+||++|=+...+-++....++.+...|..-+++|-. ++.+... +++...+
T Consensus 197 ------------g~~~kPVllKrg~~~ti~ewl~AaEyi~~~Gn~~ViLcER-----Girtfe~-------~tRntlD-- 250 (335)
T PRK08673 197 ------------GKTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCER-----GIRTFET-------ATRNTLD-- 250 (335)
T ss_pred ------------HHHCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEC-----CCCCCCC-------CCCCCCC--
T ss_conf ------------9729948973788788999987899999769986799934-----6545676-------6678778--
Q ss_pred HHHHHHHHHHCCCCEEEEE----ECCCCCHH--HHHHHHHCCCCEEEECHH-----HHCCC-----HHHHHHHHHHHHHH
Q ss_conf 8999999974089748999----67889999--999999839997545278-----77069-----78999999999999
Q gi|254780434|r 274 TIALAKIRQRVGPKIAIIG----TGGISSTK--DALDKIMAGANLIQLYSA-----MIYEG-----ISLPKRIIQGLSDF 337 (362)
Q Consensus 274 l~~i~~i~~~~~~~i~IIg----~GGI~s~~--Da~e~l~aGAs~VQi~Ta-----li~~G-----p~~~~~I~~~L~~~ 337 (362)
+..|-.+++.. ++|||. ..|-.+.- =+..-+.+|||-+.+=+- .+..| |.-+.++.++|+..
T Consensus 251 l~aip~~k~~t--hlPVI~DPSH~~G~r~~V~~la~aAiAaGaDGL~iEvHp~P~~AlSDg~Q~l~p~~f~~l~~~l~~i 328 (335)
T PRK08673 251 LSAVPVLKKLT--HLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKLRAI 328 (335)
T ss_pred HHHHHHHHHCC--CCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 78889997188--9888988822036332289999999980998899995688121468742368999999999999999
Q ss_pred HHH
Q ss_conf 998
Q gi|254780434|r 338 LNK 340 (362)
Q Consensus 338 l~~ 340 (362)
.+.
T Consensus 329 ~~~ 331 (335)
T PRK08673 329 AEA 331 (335)
T ss_pred HHH
T ss_conf 998
No 257
>PRK08005 ribulose-phosphate 3-epimerase; Validated
Probab=96.08 E-value=0.13 Score=30.59 Aligned_cols=205 Identities=15% Similarity=0.210 Sum_probs=116.6
Q ss_pred CCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 97485346888677988874036752410200136878998862688425554100002477777889998764100012
Q gi|254780434|r 56 NPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSP 135 (362)
Q Consensus 56 nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~p 135 (362)
+|=+++|-+..-++.++.+.+.|+..+-+- .-|+-.+..+.|. . .+.+.+++.. +.|
T Consensus 4 sPSil~ad~~~L~~ei~~l~~~g~d~lHiD------------------IMDG~FVPNitfg---~-~~v~~ir~~t-~~p 60 (210)
T PRK08005 4 HPSLASADPLRYAEALTALHDAPLGSLHLD------------------IEDTSFINNITFG---M-KTIQAVAQYT-RHP 60 (210)
T ss_pred EHHHHHHCHHHHHHHHHHHHHCCCCEEEEE------------------CCCCCCCCCCCCC---H-HHHHHHHHCC-CCC
T ss_conf 655654489999999999997799989982------------------8889827745629---8-9999998618-998
Q ss_pred CCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 10001104542467887765554206755269830333653221100002343211112244455655312688517865
Q gi|254780434|r 136 IGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK 215 (362)
Q Consensus 136 i~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK 215 (362)
+=+-++.+.+ ++|.+.+.+. ++|++.+-+-+-+ ...+.+..+++ .. +-..+-
T Consensus 61 ~DvHLMv~~P-----~~~i~~~~~~--g~d~it~H~Ea~~-----------~~~~~i~~Ik~---------~g-~k~GlA 112 (210)
T PRK08005 61 LSFHLMVSSP-----QRWLPWLAAI--RPGWIFIHAESVQ-----------NPSEILADIRA---------IG-AKAGLA 112 (210)
T ss_pred EEEEEEECCH-----HHHHHHHHHC--CCCEEEEECCCCC-----------CHHHHHHHHHH---------CC-CEEEEE
T ss_conf 0799986888-----9999999972--9985999356776-----------99999999997---------49-807888
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 05777748889999987644982999806655532345775446322113564542468999999974089748999678
Q gi|254780434|r 216 ISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGG 295 (362)
Q Consensus 216 LsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GG 295 (362)
|.|+.+.+.+..++. -+|.+.+- | ... |.+|..-.+.++.-|+++|+... +..|..-||
T Consensus 113 lnP~T~i~~~~~~l~-----~vD~VLvM-t-----------V~P---Gf~GQ~Fi~~~~~KI~~~r~~~~-~~~I~vDGG 171 (210)
T PRK08005 113 LNPATPLLPYRYLAL-----QLDALMIM-T-----------SEP---DGRGQQFIAAMCEKVSQSREHFP-AAECWADGG 171 (210)
T ss_pred ECCCCCHHHHHHHHH-----CCCEEEEE-E-----------ECC---CCCCCCCCHHHHHHHHHHHHHCC-CCCEEEECC
T ss_conf 379998799873040-----07989998-7-----------789---99872117889999999996287-788899788
Q ss_pred CCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHH
Q ss_conf 8999999999983999754527877069789999999999
Q gi|254780434|r 296 ISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLS 335 (362)
Q Consensus 296 I~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~ 335 (362)
|.. +-+-+...||||.+=++|++ |+-+..-..| ++|+
T Consensus 172 In~-~t~~~~~~aGad~~V~GSai-F~~~d~~~~i-~~lr 208 (210)
T PRK08005 172 ITL-RAARLLAAAGAQHLVIGRAL-FTTANYDVTL-SQFT 208 (210)
T ss_pred CCH-HHHHHHHHCCCCEEEECHHH-HCCCCHHHHH-HHHH
T ss_conf 788-99999998699999979065-3699999999-9986
No 258
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=96.04 E-value=0.054 Score=33.22 Aligned_cols=176 Identities=16% Similarity=0.191 Sum_probs=97.8
Q ss_pred CCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHH-CCCCCCEEEC
Q ss_conf 888677988874036752410200136878998862688425554100002477777889998764100-0121000110
Q gi|254780434|r 64 YDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQP-TSPIGINLGA 142 (362)
Q Consensus 64 ~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~-~~pi~vsI~~ 142 (362)
.+.-..+.+.|.+-|...+|+ | |.++.....++.|++..+ +..||+ +
T Consensus 19 ~~~A~~lA~aL~egG~~~~Ev---T--------------------------lRT~~A~~aI~~l~~~~P~~~~iGA---G 66 (205)
T TIGR01182 19 VEDALPLAKALIEGGLRVLEV---T--------------------------LRTPVALEAIRALRKEVPKDALIGA---G 66 (205)
T ss_pred HHHHHHHHHHHHHCCCEEEEE---E--------------------------ECCCCHHHHHHHHHHHCCCCCEECC---C
T ss_conf 877789999998679808988---5--------------------------1472168999999972823348716---7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH
Q ss_conf 45424678877655542067552698303336532211000023432111122444556553126885178650577774
Q gi|254780434|r 143 NKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSE 222 (362)
Q Consensus 143 ~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~ 222 (362)
+ +-+-.++.+....+|||+ + ||+ .-.++++.. ....+|++==+. +-
T Consensus 67 T------VL~~~Q~~~A~~AGA~F~---v-SPG-----------~~p~l~~~~----------~~~~~P~iPGV~---tp 112 (205)
T TIGR01182 67 T------VLNPEQLRQAVAAGAQFI---V-SPG-----------LTPELAKHA----------KDKGIPIIPGVA---TP 112 (205)
T ss_pred C------CCCHHHHHHHHHCCCCEE---E-CCC-----------CCHHHHHHH----------HHCCCCEECCCC---CH
T ss_conf 6------489899999997089578---7-697-----------888999998----------508881217776---87
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
Q ss_conf 88899999876449829998066555323457754463221135645424689999999740897489996788999999
Q gi|254780434|r 223 EELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDA 302 (362)
Q Consensus 223 ~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da 302 (362)
-+ +..|.++|++-+=++ ....+|- ..+++-++.=+ +++..+=.|||+- ..+
T Consensus 113 ---sE-i~~Al~~G~~~lKlF-----------------PAe~~GG------~~~lkAL~GPf-~~v~F~PTGGi~l-~N~ 163 (205)
T TIGR01182 113 ---SE-IMLALELGITALKLF-----------------PAEVVGG------VKMLKALAGPF-PQVRFCPTGGINL-DNA 163 (205)
T ss_pred ---HH-HHHHHHCCCCEEEEC-----------------CCCCCCH------HHHHHHHCCCC-CCCCCCCCCCCCH-HHH
T ss_conf ---89-999987577465212-----------------5623530------89999731657-8984514799988-789
Q ss_pred HHHHHCCCCEEEECHHHHCC------CHHHHHHHHHHH
Q ss_conf 99998399975452787706------978999999999
Q gi|254780434|r 303 LDKIMAGANLIQLYSAMIYE------GISLPKRIIQGL 334 (362)
Q Consensus 303 ~e~l~aGAs~VQi~Tali~~------Gp~~~~~I~~~L 334 (362)
.|||.+++=+|-.+|.|+=. .+.-++++.++.
T Consensus 164 ~~YLa~p~v~c~GGSWl~P~~~~~~g~wd~i~~l~r~a 201 (205)
T TIGR01182 164 RDYLALPNVACVGGSWLVPKDLIAAGDWDEITELAREA 201 (205)
T ss_pred HHHHCCCCEEEEECCCCCCHHHHHCCCHHHHHHHHHHH
T ss_conf 99971893799816314647887589967999999999
No 259
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=96.02 E-value=0.14 Score=30.39 Aligned_cols=227 Identities=18% Similarity=0.207 Sum_probs=122.7
Q ss_pred CEEEECCEECCCC--EEECCCCC--CCHHHHHHHH----HCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCC
Q ss_conf 1168887335997--48534688--8677988874----03675241020013687899886268842555410000247
Q gi|254780434|r 45 LNTKVAGISLSNP--LGMAAGYD--KNAEVPIELL----KLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFN 116 (362)
Q Consensus 45 L~~~~~Gl~~~nP--iglAaG~d--k~~~~~~~l~----~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~ 116 (362)
--+++.+.....+ +.++||+. .+.|++.... ..|.-++--|. .+||+ + -+.|+
T Consensus 31 tivd~~~~~~g~~~~~~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGga--fKPRT-S----------------PYsFQ 91 (286)
T COG2876 31 TIVDVGDVVIGEGRALRVIAGPCSVESEEQVRETAESVKAAGAKALRGGA--FKPRT-S----------------PYSFQ 91 (286)
T ss_pred EEECCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCHHHCCCCC--CCCCC-C----------------CCCCC
T ss_conf 13204552005886138995474247799999999999873622313776--78889-9----------------53336
Q ss_pred CCCHHHHHHHHHHHH--HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 777788999876410--001210001104542467887765554206755269830333653221100002343211112
Q gi|254780434|r 117 NAGYHTVFSRLSKIQ--PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIH 194 (362)
Q Consensus 117 N~G~~~~~~~l~~~~--~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~ 194 (362)
..|.+. ++.+++.+ .+.|+..-|+. ..| ++.+.+++|.+-| |-|.+|+=+.|.+.
T Consensus 92 Glge~g-L~~l~~a~~~~Gl~vvtEvm~-------~~~----~e~~~~y~Dilqv--------GARNMQNF~LLke~--- 148 (286)
T COG2876 92 GLGEEG-LKLLKRAADETGLPVVTEVMD-------VRD----VEAAAEYADILQV--------GARNMQNFALLKEV--- 148 (286)
T ss_pred CCCHHH-HHHHHHHHHHCCCEEEEEECC-------HHH----HHHHHHHHHHHHH--------CCCCHHHHHHHHHH---
T ss_conf 657788-999999888729905889548-------989----9999866169886--------33200516999982---
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 24445565531268851786505777748889999987644982999806655532345775446322113564542468
Q gi|254780434|r 195 VMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKST 274 (362)
Q Consensus 195 v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al 274 (362)
...++||++|=.+--|-++....|+-....|-..+++|-. ++.+....+ + .-.-+
T Consensus 149 -----------G~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCER-----GIRtfe~~T-------R--ntLDi 203 (286)
T COG2876 149 -----------GRQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCER-----GIRTFEKAT-------R--NTLDI 203 (286)
T ss_pred -----------CCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC-----CCCCCCCCC-------C--CEECH
T ss_conf -----------3559976972474124999999999999679995799714-----433455566-------6--42236
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHH------HHHHHHCCCCEEEEC------HHH----HCCCHHHHHHHHHHHHHHH
Q ss_conf 999999974089748999678899999------999998399975452------787----7069789999999999999
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKD------ALDKIMAGANLIQLY------SAM----IYEGISLPKRIIQGLSDFL 338 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~D------a~e~l~aGAs~VQi~------Tal----i~~Gp~~~~~I~~~L~~~l 338 (362)
..|..+++.+ ++|||.-=-=.++++ |..-+.+|||-+++- .|+ -.-.|.-+.++.+++..+.
T Consensus 204 ~aV~~~kq~T--HLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~~~~~ 281 (286)
T COG2876 204 SAVPILKQET--HLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKELRALA 281 (286)
T ss_pred HHHHHHHHHC--CCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8888887615--78779878776553135788899998616773699964795434576000179999999999998776
Q ss_pred HH
Q ss_conf 98
Q gi|254780434|r 339 NK 340 (362)
Q Consensus 339 ~~ 340 (362)
+.
T Consensus 282 ~~ 283 (286)
T COG2876 282 DA 283 (286)
T ss_pred HH
T ss_conf 54
No 260
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=95.98 E-value=0.12 Score=30.84 Aligned_cols=91 Identities=20% Similarity=0.240 Sum_probs=54.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 786505777748889999987644982999806--655532345775446322113564542468999999974089748
Q gi|254780434|r 212 IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSN--TTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIA 289 (362)
Q Consensus 212 i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~N--T~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~ 289 (362)
.++-+|-+ ...++. .+.+.|+|=+.+.- .|..++ .. + .|..+..+.+..+.. .++|
T Consensus 103 ~iIG~S~h----~~~e~~-~A~~~gaDYig~Gpif~T~TK~---------~~----~---~p~G~~~l~~~~~~~-~~iP 160 (211)
T PRK03512 103 LRLGVSTH----DDMEID-VALAARPSYIALGHVFPTQTKQ---------MP----S---APQGLAQLARHVERL-ADYP 160 (211)
T ss_pred CEEEEECC----CHHHHH-HHHHCCCCEEEECCCCCCCCCC---------CC----C---CCCHHHHHHHHHHHC-CCCC
T ss_conf 78997429----999999-9986499839985633458878---------99----8---872499999999971-7999
Q ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-CCHH
Q ss_conf 99967889999999999839997545278770-6978
Q gi|254780434|r 290 IIGTGGISSTKDALDKIMAGANLIQLYSAMIY-EGIS 325 (362)
Q Consensus 290 IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~-~Gp~ 325 (362)
+++.||| +.+++.+.+.+||+-|-|.|+++. +.|.
T Consensus 161 vvAIGGI-~~~n~~~v~~~Ga~gvAViSaI~~a~dp~ 196 (211)
T PRK03512 161 TVAIGGI-SLERAPAVLATGVGSIAVVSAITQAADWR 196 (211)
T ss_pred EEEECCC-CHHHHHHHHHCCCCEEEEEHHHHCCCCHH
T ss_conf 8998896-89999999983999999951874699999
No 261
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=95.98 E-value=0.15 Score=30.27 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf 45424689999999740--8974899967889999999999839997545278
Q gi|254780434|r 268 PLFLKSTIALAKIRQRV--GPKIAIIGTGGISSTKDALDKIMAGANLIQLYSA 318 (362)
Q Consensus 268 ~i~~~al~~i~~i~~~~--~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Ta 318 (362)
.|.|.-+++=.++.... ...+-|=+.|||-|++-|..-++.||+.|.-+|-
T Consensus 198 ~LlP~i~~LRd~~~~~~~y~~~iRvGaAGGIGTP~aaaAAF~mGA~yVvTGSI 250 (418)
T cd04742 198 VLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSI 250 (418)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHCCCCEEEECCH
T ss_conf 89899999999999861888884110358879879999999717744895553
No 262
>PRK04180 pyridoxine biosynthesis protein; Provisional
Probab=95.95 E-value=0.013 Score=37.32 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=52.3
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHH------------------CCCHHHHHHHHHHHH
Q ss_conf 89999999740897489996788999999999983999754527877------------------069789999999999
Q gi|254780434|r 274 TIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMI------------------YEGISLPKRIIQGLS 335 (362)
Q Consensus 274 l~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali------------------~~Gp~~~~~I~~~L~ 335 (362)
..++.++++.-.--++-.+.|||.|+.||.-++-.|||-|=++|+.. |+.|.++.++-++|.
T Consensus 192 ~elv~~v~~~grLPVvnFaAGGiATPADAALmMqLG~dGVFVGSGIFKS~dP~~rA~AIV~A~thy~dp~~laevS~~Lg 271 (293)
T PRK04180 192 YELVKEVARLGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGNPEKRAKAIVEATTHYDDPEVLAEVSKGLG 271 (293)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 89999999848876255325775780569999871787467545434679988999999999852378999999986126
Q ss_pred HHHHHCCCCCH
Q ss_conf 99998389977
Q gi|254780434|r 336 DFLNKENEVNF 346 (362)
Q Consensus 336 ~~l~~~G~~si 346 (362)
+-|.--..+++
T Consensus 272 eaM~Gi~i~~l 282 (293)
T PRK04180 272 EAMVGIDIDEL 282 (293)
T ss_pred CCCCCCCCCCC
T ss_conf 56678860329
No 263
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.93 E-value=0.11 Score=31.14 Aligned_cols=135 Identities=13% Similarity=0.118 Sum_probs=82.0
Q ss_pred HHHHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 8776555420-675526983033365322110000234321111224445565531268851786505777748889999
Q gi|254780434|r 151 LDYVSGIRLF-FTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIA 229 (362)
Q Consensus 151 ~dy~~~~~~~-~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia 229 (362)
++...+++.+ ..+...+|+-+..|+.. +.+ ..+.+. ... +.+-..-=++ .+-+
T Consensus 27 ~~a~~~~~al~~gGi~~iEITlrt~~a~--------~~I----~~l~~~--------~p~--~~vGaGTVl~----~e~~ 80 (212)
T PRK06015 27 EHAVPLARALARGGLPAIEITLRTPAAL--------DAI----RAVAAE--------VEE--AIVGAGTILN----AKQF 80 (212)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHH--------HHH----HHHHHH--------CCC--CEEEEEECCC----HHHH
T ss_conf 9999999999987998899968995199--------999----999986--------999--6795421156----9999
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCC
Q ss_conf 98764498299980665553234577544632211356454246899999997408974899967889999999999839
Q gi|254780434|r 230 VEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAG 309 (362)
Q Consensus 230 ~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aG 309 (362)
+.+.++|++.++.-++ ....+...+ .. ++|. .=|+.|+.++...+.+|
T Consensus 81 ~~a~~aGA~FiVSP~~---------------------------~~~v~~~a~-~~--~i~~--iPGv~TpsEi~~A~~~G 128 (212)
T PRK06015 81 EDAAKAGSRFIVSPGT---------------------------TQELLAAAN-DS--DVPL--LPGAITPSEVMALREEG 128 (212)
T ss_pred HHHHHCCCCEEECCCC---------------------------CHHHHHHHH-HC--CCCE--ECCCCCHHHHHHHHHCC
T ss_conf 9999849989985899---------------------------999999999-83--9977--37869999999999879
Q ss_pred CCEEEECHHHHCCCHHHHHHHH----------------HHHHHHHHHCCC
Q ss_conf 9975452787706978999999----------------999999998389
Q gi|254780434|r 310 ANLIQLYSAMIYEGISLPKRII----------------QGLSDFLNKENE 343 (362)
Q Consensus 310 As~VQi~Tali~~Gp~~~~~I~----------------~~L~~~l~~~G~ 343 (362)
++.|-++-+-..-||..++.+. +.+.+||+..++
T Consensus 129 ~~~vKlFPA~~~gG~~~lkal~~p~p~~~~~ptGGV~~~N~~~yl~~~~v 178 (212)
T PRK06015 129 YTVLKFFPAEQAGGAAFLKALSSPLAGTFFCPTGGISLKNARDYLSLPNV 178 (212)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHCCCCE
T ss_conf 99899784300168999999857799998886289898889999808981
No 264
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=95.90 E-value=0.16 Score=30.05 Aligned_cols=181 Identities=17% Similarity=0.200 Sum_probs=92.0
Q ss_pred HHHHHHHCCCC-----CCEEEC-CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 87641000121-----000110-454246788776555420675526983033365322110000234321111224445
Q gi|254780434|r 126 RLSKIQPTSPI-----GINLGA-NKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTR 199 (362)
Q Consensus 126 ~l~~~~~~~pi-----~vsI~~-~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~ 199 (362)
.+++.-++.|+ |.|+-+ ..-.+|-++.|++.. ...+.|.+-+- -+ +.|..++..-..++++.-
T Consensus 69 ~lr~~~pnt~lQmLlRG~N~vGy~~ypddvv~~fv~~~--~~~GidifRiF-Da--------LNdv~Nm~~ai~~vk~~G 137 (499)
T PRK12330 69 TFRKLMPNSKLQMLLRGQNLLGYRHYEDEVVDRFVEKS--AENGMDVFRVF-DA--------LNDLRNLETSIKAVKKTG 137 (499)
T ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH--HHCCCCEEEEE-CC--------CCCHHHHHHHHHHHHHCC
T ss_conf 99986779732313133550564258879999999999--97699889972-44--------445777899999999718
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 56553126885178650577774888999998764498299980665553234577544632211356454246899999
Q gi|254780434|r 200 EEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAK 279 (362)
Q Consensus 200 ~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~ 279 (362)
.. ...-|---.||--+.+...++++.+++.|+|.|.+-. +.++..+ ..+-.+|..
T Consensus 138 ~~------~q~~i~yt~sPvht~~yy~~~ak~l~~~G~d~i~IKD----mAGll~P---------------~~a~~LV~~ 192 (499)
T PRK12330 138 KH------AQGTICYTVSPIHTTEGFVEQAKRLLDMGCDSICIKD----MAALLKP---------------QPAYDLVKG 192 (499)
T ss_pred CE------EEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEC----CCCCCCH---------------HHHHHHHHH
T ss_conf 85------8999996058877899999999999975999899847----5346788---------------999999999
Q ss_pred HHHHCCCCEEEEEECCCCCH---HHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99740897489996788999---999999983999754527877069789999999999999983899
Q gi|254780434|r 280 IRQRVGPKIAIIGTGGISST---KDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362)
Q Consensus 280 i~~~~~~~i~IIg~GGI~s~---~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362)
+++.+++++||==-.=-.+| .-.++-+.||||.|..+..-+-.|.....- ..+-..|+..||+
T Consensus 193 lk~~~g~d~pI~~HtH~T~G~~~~~~l~AieAGvDivD~A~~~~s~gtsqp~~--~s~va~L~~t~~d 258 (499)
T PRK12330 193 IKEACGPDTRVHVHAHATTGVTLVSLMKAIEAGVDVVDTAISSMSLGPGHNPT--ESLVEMLEGTGYT 258 (499)
T ss_pred HHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCH--HHHHHHHHCCCCC
T ss_conf 99863899837985178874699999999984998872445432379889979--9999998578988
No 265
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=95.88 E-value=0.16 Score=30.00 Aligned_cols=184 Identities=23% Similarity=0.312 Sum_probs=106.8
Q ss_pred EECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 42555410000247777788999876410001210001104542467887765554206755269830333653221100
Q gi|254780434|r 103 LTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSL 182 (362)
Q Consensus 103 ~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~ 182 (362)
..-|+-.+..++| |. .+++.+++..++.|+=|-++.+.+ ++|.+.+. ..++|++.+-+=|.+
T Consensus 37 DImDG~FVpN~t~---g~-~~v~~ir~~~~~~~lDvHLMv~~P-----~~~i~~~~--~~gad~I~~H~E~~~------- 98 (224)
T PTZ00170 37 DVMDGHFVPNLSF---GP-PVVSSLRKHLPNTFLDVHLMVSDP-----ERWVDSFA--KAGASQFTFHIEATE------- 98 (224)
T ss_pred ECCCCCCCCCCCC---CH-HHHHHHHHHCCCCCEEEEEEECCH-----HHHHHHHH--HCCCCEEEECCCCCC-------
T ss_conf 4405850776574---97-899999971799864689986388-----88799998--628967998500133-------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 00234321111224445565531268851786505777748889999987644982999806655532345775446322
Q gi|254780434|r 183 QKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDG 262 (362)
Q Consensus 183 ~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~G 262 (362)
...+.+..+++. . +-..+-|.|+.+.+.+..+++ +.-+|.|.+-- ...
T Consensus 99 ----~~~~~i~~ik~~--------g--~k~GlAlnP~T~i~~l~~~l~---~~~iD~VLlMs------------V~P--- 146 (224)
T PTZ00170 99 ----DPKAVARKIRAA--------G--MQVGVALKPKTPAEELFPLID---AGLVDMVLVMT------------VEP--- 146 (224)
T ss_pred ----CHHHHHHHHHHH--------C--CCEEEEECCCCCHHHHHHHHH---HCCCCEEEEEE------------ECC---
T ss_conf ----999999999971--------4--764556079998799999971---14457899985------------569---
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 113564542468999999974089748999678899999999998399975452787706978999999999999998
Q gi|254780434|r 263 GLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNK 340 (362)
Q Consensus 263 GlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~ 340 (362)
|.+|..-.+-++.-|+++|+.. +++.|---|||.. +-+-+...+|||.+=++|+ +|+.+.. ++-.+.|++-.++
T Consensus 147 Gf~GQ~Fi~~~l~KI~~lr~~~-~~~~I~VDGGIn~-~ti~~l~~aGad~~V~GSa-iF~~~d~-~~~i~~lr~~i~~ 220 (224)
T PTZ00170 147 GFGGQSFMHDMMPKVRQLRQRY-PHLNIQVDGGINP-DTIDLAAEAGANVIVAGTS-IFKANDR-KESIETLRRSVQK 220 (224)
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-CCCEEEEECCCCH-HHHHHHHHCCCCEEEECHH-HHCCCCH-HHHHHHHHHHHHH
T ss_conf 9876214588999999998548-9975999589998-9999999869999997858-8679999-9999999999997
No 266
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=95.85 E-value=0.17 Score=29.90 Aligned_cols=216 Identities=13% Similarity=0.107 Sum_probs=111.8
Q ss_pred HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCH
Q ss_conf 77988874036752410200136878998862688425554100002477777889998764100012100011045424
Q gi|254780434|r 68 AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSK 147 (362)
Q Consensus 68 ~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~ 147 (362)
.+..+.+.++|+-.+|++.-. |-+... .+ .||+...-..+.+.+........+.+-.... -
T Consensus 27 ~~ia~~Ld~aGVd~IEvg~g~-----g~~~ss----------~~-~g~~~~~d~e~i~~~~~~~~~ak~~~l~~pg---~ 87 (333)
T TIGR03217 27 RAIAAALDEAGVDAIEVTHGD-----GLGGSS----------FN-YGFSAHTDLEYIEAAADVVKRAKVAVLLLPG---I 87 (333)
T ss_pred HHHHHHHHHCCCCEEEEECCC-----CCCCCC----------CC-CCCCCCCCHHHHHHHHHHHCCCCEEEEECCC---C
T ss_conf 999999997198989960688-----888874----------33-5788899499999999874248056996478---6
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 67887765554206755269830333653221100002343211112244455655312688517865057777488899
Q gi|254780434|r 148 DFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDD 227 (362)
Q Consensus 148 ~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ 227 (362)
....|.. . ....++|.+-+-..|-.. +...+. +... .+....+-.++-++...+.+.+.+
T Consensus 88 ~~~~dl~-~--a~~~gv~~vri~~~~te~---------d~~~~~---i~~a-----k~~G~~v~~~~~~s~~~~~e~l~~ 147 (333)
T TIGR03217 88 GTVHDLK-A--AYDAGARTVRVATHCTEA---------DVSEQH---IGMA-----RELGMDTVGFLMMSHMTPPEKLAE 147 (333)
T ss_pred CCHHHHH-H--HHHCCCCEEEEEECCCHH---------HHHHHH---HHHH-----HHCCCEEEEEEEECCCCCHHHHHH
T ss_conf 6699999-9--996699978986316678---------889999---9999-----976980999975056899999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCCCC----HHHH
Q ss_conf 999876449829998066555323457754463221135645424-68999999974089748999678899----9999
Q gi|254780434|r 228 IAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLK-STIALAKIRQRVGPKIAIIGTGGISS----TKDA 302 (362)
Q Consensus 228 ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~-al~~i~~i~~~~~~~i~IIg~GGI~s----~~Da 302 (362)
.++.++++|+|.|.+..|.+.. .|. ..+.++.+++.++++++| |.=+=.+ -.-+
T Consensus 148 ~a~~~~~~Gad~I~i~DT~G~~--------------------~P~~v~~~v~~l~~~~~~~i~i-g~H~HNnlGlAvANs 206 (333)
T TIGR03217 148 QAKLMESYGADCVYIVDSAGAM--------------------LPDDVRDRVRALKAVLKPETQV-GFHAHHNLSLAVANS 206 (333)
T ss_pred HHHHHHHCCCCEEEECCCCCCC--------------------CHHHHHHHHHHHHHHCCCCCEE-EEEEECCCCHHHHHH
T ss_conf 9999985699999975964468--------------------9999999999999862997548-898617877299999
Q ss_pred HHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999839997545278770697899999999999999838997
Q gi|254780434|r 303 LDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVN 345 (362)
Q Consensus 303 ~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~s 345 (362)
+..+.+||+-|+..-.=+=+|.+-.. .++|-..|++.||++
T Consensus 207 laAi~aGa~~VD~Ti~GlGe~aGNa~--lE~lVa~l~~~g~~t 247 (333)
T TIGR03217 207 IAAIEAGATRIDASLRGLGAGAGNAP--LEVFVAVLDRLGWNT 247 (333)
T ss_pred HHHHHCCCCEEEECCCCCCCCCCCCH--HHHHHHHHHCCCCCC
T ss_conf 99998199999762744889888734--999999996179865
No 267
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=95.84 E-value=0.05 Score=33.44 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=28.1
Q ss_pred CCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCC
Q ss_conf 59974853468886779888740367524102001
Q gi|254780434|r 54 LSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVT 88 (362)
Q Consensus 54 ~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit 88 (362)
...||=+..|. .+.+.+..+.++|..-|++||+.
T Consensus 74 ~~~~vQvGGGI-Rs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 74 TDVPVQVGGGI-RSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred CCCCEEEECCC-CCHHHHHHHHHCCCCEEEEECCE
T ss_conf 79977840876-78999999998799889980312
No 268
>KOG0399 consensus
Probab=95.83 E-value=0.066 Score=32.63 Aligned_cols=80 Identities=11% Similarity=0.161 Sum_probs=61.6
Q ss_pred HHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-CC--------------------HH--------------H
Q ss_conf 7408974899967889999999999839997545278770-69--------------------78--------------9
Q gi|254780434|r 282 QRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY-EG--------------------IS--------------L 326 (362)
Q Consensus 282 ~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~-~G--------------------p~--------------~ 326 (362)
.-+..++.|=.-|++.|+.|+.-.-+.||+--...|+-+. -| |. .
T Consensus 1164 NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~PehvVNf 1243 (2142)
T KOG0399 1164 NDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEHVVNF 1243 (2142)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCHHHHHH
T ss_conf 26130279983685023368999998373031544017998766999886057887411138988896579992778899
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHCC
Q ss_conf 99999999999998389977896169752664138
Q gi|254780434|r 327 PKRIIQGLSDFLNKENEVNFENIRGSYTEYWAKKE 361 (362)
Q Consensus 327 ~~~I~~~L~~~l~~~G~~si~e~iG~~~~~~~~~~ 361 (362)
+--+.+|+..+|.+-||++++|+||+.-.-+++++
T Consensus 1244 f~yvaEEvR~imakLGfrtldemvGrtdlLk~~~d 1278 (2142)
T KOG0399 1244 FFYVAEEVRGIMAKLGFRTLDEMVGRTDLLKARSD 1278 (2142)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHCCHHHHCCCCC
T ss_conf 99999999999988381058887361544223455
No 269
>PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated
Probab=95.69 E-value=0.19 Score=29.51 Aligned_cols=216 Identities=16% Similarity=0.129 Sum_probs=112.3
Q ss_pred HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCH
Q ss_conf 77988874036752410200136878998862688425554100002477777889998764100012100011045424
Q gi|254780434|r 68 AEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSK 147 (362)
Q Consensus 68 ~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~ 147 (362)
.+..+.+.++|+-.+|++- |+.-+ .+.. .+||+...-..+++.++....+..+.+-+-.. .
T Consensus 28 ~~ia~~Ld~aGVd~IEVgh-------g~gl~--------~ss~-~~g~~~~~d~e~i~~~~~~~~~aki~~l~~pg---~ 88 (337)
T PRK08195 28 RAIARALDAAGVPVIEVTH-------GDGLG--------GSSF-NYGFGAHTDEEYIEAAADVVKQAKLATLLLPG---I 88 (337)
T ss_pred HHHHHHHHHCCCCEEEECC-------CCCCC--------CCCC-CCCCCCCCHHHHHHHHHHHHHCCEEEEEECCC---C
T ss_conf 9999999980989999447-------88877--------7533-46787798399999999974328378996356---5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 67887765554206755269830333653221100002343211112244455655312688517865057777488899
Q gi|254780434|r 148 DFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDD 227 (362)
Q Consensus 148 ~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ 227 (362)
...+|. +. ....++|.+-+-..|-.. +...+.+.. ..+....+-.++-.+.-.+.+.+.+
T Consensus 89 ~~~~dl-~~--A~~~gv~~vria~~~tea---------d~~~~~i~~--------ar~~G~~v~~~lm~s~~~~~e~l~~ 148 (337)
T PRK08195 89 GTIEDL-KM--AYDAGVRVVRVATHCTEA---------DVSEQHIGL--------ARELGMDTVGFLMMSHMASPEKLAE 148 (337)
T ss_pred CCHHHH-HH--HHHCCCCEEEEEEECCHH---------HHHHHHHHH--------HHHCCCEEEEEEHHCCCCCHHHHHH
T ss_conf 558889-99--995798979998631488---------779999999--------9977993999751102489999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCCCC----HHHH
Q ss_conf 999876449829998066555323457754463221135645424-68999999974089748999678899----9999
Q gi|254780434|r 228 IAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLK-STIALAKIRQRVGPKIAIIGTGGISS----TKDA 302 (362)
Q Consensus 228 ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~-al~~i~~i~~~~~~~i~IIg~GGI~s----~~Da 302 (362)
.++.++++|+|.|.+..|.+. +.|. ..+.+..+++.++++++| |.=+=.+ -.-.
T Consensus 149 ~a~~~~~~Gad~I~l~DT~G~--------------------~~P~~v~~~v~~l~~~l~~~i~i-gfH~HNnlGlAvANs 207 (337)
T PRK08195 149 QAKLMESYGAQCVYVVDSAGA--------------------LLPDDVRARVRALRAALKPDTQV-GFHGHHNLGLGVANS 207 (337)
T ss_pred HHHHHHHCCCCEEEECCCCCC--------------------CCHHHHHHHHHHHHHHCCCCCEE-EEEECCCCCHHHHHH
T ss_conf 999998659999997898766--------------------79999999999999864998549-998538867599999
Q ss_pred HHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999839997545278770697899999999999999838997
Q gi|254780434|r 303 LDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVN 345 (362)
Q Consensus 303 ~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~s 345 (362)
+.-+.+||+.|+..-.=+=+|.+-.. .+.|...|++.||.+
T Consensus 208 laAveaGA~~ID~Ti~GlGegAGNa~--lE~lva~l~r~g~~~ 248 (337)
T PRK08195 208 LAAVEAGADRIDASLAGFGAGAGNAP--LEVLVAVLDRMGWET 248 (337)
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCHH--HHHHHHHHHHCCCCC
T ss_conf 99998099999850534488878738--999999997469865
No 270
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=95.64 E-value=0.2 Score=29.38 Aligned_cols=186 Identities=16% Similarity=0.211 Sum_probs=104.7
Q ss_pred EEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 68842555410000247777788999876410001210001104542467887765554206755269830333653221
Q gi|254780434|r 100 VFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGL 179 (362)
Q Consensus 100 ~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~ 179 (362)
++-..-|+-.+..++|. . .+++.+++. .+.|+=+-++... .++|.+.+.+ .++|++.+-+-+-+.
T Consensus 29 iHiDIMDG~FVPN~tfg---p-~~v~~ir~~-t~~p~DvHLMv~~-----P~~~i~~~~~--~gad~It~H~Ea~~~--- 93 (227)
T PRK09722 29 FHIDIMDGHFVPNLTLS---P-FFVSQVKKL-ASKPLDCHLMVTR-----PQDYIAQLAD--AGADFITLHPETING--- 93 (227)
T ss_pred EEEECCCCCCCCCCCCC---H-HHHHHHHHC-CCCCEEEEEEECC-----HHHHHHHHHH--CCCCEEEECHHHCCC---
T ss_conf 99956168607854518---6-599999744-8996478999658-----8888999985--499899956565056---
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 10000234321111224445565531268851786505777748889999987644982999806655532345775446
Q gi|254780434|r 180 RSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHE 259 (362)
Q Consensus 180 ~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~ 259 (362)
...+.+..+++ .. +-..+-|-|+.+.+.+..++. -+|.+.+- ...
T Consensus 94 -------~~~~~i~~Ik~--------~g--~k~GlAlnP~Tpi~~i~~~l~-----~vD~VLvM------------sV~- 138 (227)
T PRK09722 94 -------QAFRLIDEIRR--------AG--MKVGLVLNPETPVEAIKYYIH-----LADKVTVM------------TVD- 138 (227)
T ss_pred -------CHHHHHHHHHH--------CC--CCEEEEECCCCCHHHHHHHHH-----HCCEEEEE------------EEC-
T ss_conf -------59999999998--------69--972233389998668876674-----37989999------------888-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHC---CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHH----HHHHHH
Q ss_conf 3221135645424689999999740---897489996788999999999983999754527877069789----999999
Q gi|254780434|r 260 QDGGLSGSPLFLKSTIALAKIRQRV---GPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISL----PKRIIQ 332 (362)
Q Consensus 260 ~~GGlSG~~i~~~al~~i~~i~~~~---~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~----~~~I~~ 332 (362)
. |.+|..-.+-++.-|+++|+.. +.++.|---|||. .+-+-+...||||.+=++|+.+|..+.- ++.+..
T Consensus 139 -P-Gf~GQ~Fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~~i~~~~~aGAd~~V~GssaiF~~~~~i~~~~~~l~~ 215 (227)
T PRK09722 139 -P-GFAGQPFIPEMLDKIAELKAWREREGLEYEIEVDGSCN-QKTYEKLMAAGADVFIVGTSGLFNHAENIDEAWDIMTA 215 (227)
T ss_pred -C-CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHH
T ss_conf -9-99876566889999999999998259982699989888-99999999869999997748974899999999999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780434|r 333 GLSDFL 338 (362)
Q Consensus 333 ~L~~~l 338 (362)
++.+-+
T Consensus 216 ~~~~~~ 221 (227)
T PRK09722 216 QILAAT 221 (227)
T ss_pred HHHHHH
T ss_conf 999986
No 271
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=95.61 E-value=0.19 Score=29.48 Aligned_cols=42 Identities=17% Similarity=0.394 Sum_probs=26.2
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHH
Q ss_conf 74899967889999999999839997545278770697899999
Q gi|254780434|r 287 KIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRI 330 (362)
Q Consensus 287 ~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I 330 (362)
++|+ +=|+.|+..+..-+.+|++.+-+.-+-..-|+..++-+
T Consensus 106 ~ip~--~PG~~TptEi~~Ale~G~~~lK~FPa~~~Gg~~~~ka~ 147 (211)
T COG0800 106 GIPY--IPGVATPTEIMAALELGASALKFFPAEVVGGPAMLKAL 147 (211)
T ss_pred CCCC--CCCCCCHHHHHHHHHCCHHHEEECCCCCCCCHHHHHHH
T ss_conf 9963--68879989999999807224564373113769899987
No 272
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=95.56 E-value=0.22 Score=29.17 Aligned_cols=207 Identities=19% Similarity=0.281 Sum_probs=116.5
Q ss_pred CEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 74853468886779888740367524102001368789988626884255541000024777778899987641000121
Q gi|254780434|r 57 PLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPI 136 (362)
Q Consensus 57 PiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi 136 (362)
|=.++|-+.+-.+.++++.+.|+..+-+ ..-|+-.+..++| |. .+++.+++. .+.|+
T Consensus 8 pSil~ad~~~l~~~i~~l~~~g~~~lHi------------------DImDG~FVpn~t~---g~-~~v~~i~~~-t~~~~ 64 (220)
T PRK05581 8 PSILSADFARLGEEVKAVEAAGADWIHV------------------DVMDGHFVPNLTI---GP-PVVEAIRKV-TKLPL 64 (220)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCCEEEE------------------ECCCCCCCCCCCC---CH-HHHHHHHHH-CCCCE
T ss_conf 8774079999999999999769998999------------------5757844775563---99-999999841-89964
Q ss_pred CCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 00011045424678877655542067552698303336532211000023432111122444556553126885178650
Q gi|254780434|r 137 GINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKI 216 (362)
Q Consensus 137 ~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKL 216 (362)
=|-++.+.+ ++|.+.+. ..++|.+.+-+-+. +...+.+..+++. .. -..+-|
T Consensus 65 DvHLMv~~P-----~~~i~~~~--~~g~d~I~~H~Ea~-----------~~~~~~i~~ik~~--------g~--k~Glal 116 (220)
T PRK05581 65 DVHLMVENP-----DRYVPDFA--KAGADIITFHVEAS-----------EHIHRLLQLIKEA--------GI--KAGLVL 116 (220)
T ss_pred EEEEEEECH-----HHHHHHHH--HCCCCEEEECCCCC-----------CCHHHHHHHHHHC--------CC--CEEEEE
T ss_conf 789997188-----88799999--73998899816750-----------2799999999974--------99--704676
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCCEEEEEE
Q ss_conf 57777488899999876449829998066555323457754463221135645424689999999740---897489996
Q gi|254780434|r 217 SPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRV---GPKIAIIGT 293 (362)
Q Consensus 217 sPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~---~~~i~IIg~ 293 (362)
.|+.+.+.+..++.. +|.+.+- | . +. |.+|....+.++..|+++|+.. +.++.|---
T Consensus 117 np~T~~~~l~~~l~~-----iD~VlvM-t-----------V--~P-Gf~GQ~f~~~~l~ki~~l~~~~~~~~~~~~I~VD 176 (220)
T PRK05581 117 NPATPLEYLEYVLPL-----LDLVLLM-S-----------V--NP-GFGGQKFIPEVLEKIREVRKLIDERGLDILIEVD 176 (220)
T ss_pred CCCCCHHHHHHHHHH-----HCEEEEE-E-----------E--CC-CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 699998999999874-----1525899-8-----------6--58-8787645566999999999999845997559997
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 78899999999998399975452787706978999999999999
Q gi|254780434|r 294 GGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDF 337 (362)
Q Consensus 294 GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~ 337 (362)
|||.. +.+-+...+|||.+=++|++ |+.+. ..+..+.|++.
T Consensus 177 GGIn~-~~i~~l~~~Gad~~V~GS~i-F~~~d-~~~~i~~lk~~ 217 (220)
T PRK05581 177 GGVNA-ENIKECAEAGADVFVAGSAV-FGAPD-YKEAIDELRAE 217 (220)
T ss_pred CCCCH-HHHHHHHHCCCCEEEECHHH-HCCCC-HHHHHHHHHHH
T ss_conf 89898-99999997799999979488-57999-99999999998
No 273
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=95.54 E-value=0.11 Score=31.17 Aligned_cols=195 Identities=12% Similarity=0.130 Sum_probs=89.4
Q ss_pred CCC-CCCC--HHHHHHHHH-CCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHH-HHHCCC
Q ss_conf 346-8886--779888740-36752410200136878998862688425554100002477777889998764-100012
Q gi|254780434|r 61 AAG-YDKN--AEVPIELLK-LGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSK-IQPTSP 135 (362)
Q Consensus 61 AaG-~dk~--~~~~~~l~~-~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~-~~~~~p 135 (362)
+.| +|.. .+.++.+.+ .|..++++...|-+- +.+ .......+.+...+ .....|
T Consensus 14 ~dg~iD~~~~~~~i~~li~~~Gv~gi~v~GstGE~---------~~L------------s~~Er~~l~~~~~~~~~~r~p 72 (288)
T cd00954 14 ENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEG---------FLL------------SVEERKQIAEIVAEAAKGKVT 72 (288)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC---------CCC------------CHHHHHHHHHHHHHHCCCCCE
T ss_conf 88597999999999999987799899979354252---------138------------999999999999997289860
Q ss_pred CCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 10001104542467887765554206755269830333653221100002343211112244455655312688517865
Q gi|254780434|r 136 IGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLK 215 (362)
Q Consensus 136 i~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vK 215 (362)
++++++.++ +.+ ..++.+.+++++ ||++-+ ..|..-. . +.+.+......+ ......+||++=
T Consensus 73 vi~gv~~~s-~~~-ai~~a~~a~~~G--ad~v~v--~~P~y~~---~-~~~~~~~~~~~i--------~~~~~~~piiiY 134 (288)
T cd00954 73 LIAHVGSLN-LKE-SQELAKHAEELG--YDAISA--ITPFYYK---F-SFEEIKDYYREI--------IAAAASLPMIIY 134 (288)
T ss_pred EEECCCCCC-HHH-HHHHHHHHHHCC--CCEEEE--CCCCCCC---C-CHHHHHHHHHHH--------HHHCCCCCEEEE
T ss_conf 873588645-999-999999998649--786773--7998879---9-979999999999--------985779965432
Q ss_pred CCCC-----CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 0577-----77488899999876449829998066555323457754463221135645424689999999740897489
Q gi|254780434|r 216 ISPD-----LSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAI 290 (362)
Q Consensus 216 LsPd-----~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~I 290 (362)
=.|. ++.+.+..++ + ...|+.+- . . ||. ...+.++.+..+.++.+
T Consensus 135 n~P~~tg~~l~~~~l~~L~----~--~~~vvgiK-----~----s---------~~d------~~~~~~~~~~~~~~~~v 184 (288)
T cd00954 135 HIPALTGVNLTLEQFLELF----E--IPNVIGVK-----F----T---------ATD------LYDLERIRAASPEDKLV 184 (288)
T ss_pred CCCCCCCCCCCHHHHHHHH----C--CCCEEEEE-----E----C---------CCC------HHHHHHHHHHCCCCCEE
T ss_conf 1765237689999999996----3--68978999-----7----8---------799------99999999976998246
Q ss_pred EEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHH
Q ss_conf 9967889999999999839997545278770697899999
Q gi|254780434|r 291 IGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRI 330 (362)
Q Consensus 291 Ig~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I 330 (362)
++ |. ..-.++.+.+||+-.-.+++-++ |..+.+|
T Consensus 185 ~~--G~--d~~~~~~~~~Ga~G~i~~~~n~~--p~~~~~i 218 (288)
T cd00954 185 LN--GF--DEMLLSALALGADGAIGSTYNVN--GKRYRKI 218 (288)
T ss_pred EC--CC--HHHHHHHHHCCCCEEEECHHHHH--HHHHHHH
T ss_conf 16--95--79999999869989995767867--9999999
No 274
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway . TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group .; GO: 0004789 thiamin-phosphate diphosphorylase activity, 0009228 thiamin biosynthetic process.
Probab=95.53 E-value=0.076 Score=32.22 Aligned_cols=140 Identities=19% Similarity=0.185 Sum_probs=87.0
Q ss_pred HHHHHHHHHHH--HHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 78899987641--0001210001104542467887765554206755269830333653221100002343211112244
Q gi|254780434|r 120 YHTVFSRLSKI--QPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQ 197 (362)
Q Consensus 120 ~~~~~~~l~~~--~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~ 197 (362)
.-...+.++++ +.+.|++|| |+++++..+. ||-+=| .|+.-. +..
T Consensus 51 ~~~~A~~l~~lc~~y~~~f~vN------------D~vdlA~~~~--ADGvHl------------GQ~D~p-------~~~ 97 (210)
T TIGR00693 51 RLELAEKLRELCRKYGVPFIVN------------DRVDLALALG--ADGVHL------------GQDDLP-------VSE 97 (210)
T ss_pred HHHHHHHHHHHHHHCCCCEEEC------------CHHHHHHHHC--CCEEEE------------CCCCCC-------HHH
T ss_conf 9999999999998708976882------------8399999837--987766------------788899-------899
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH---HCCCCEEEE---ECCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 455655312688517865057777488899999876---449829998---06655532345775446322113564542
Q gi|254780434|r 198 TREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVL---SHKVEGIIV---SNTTLSRKGVQCSDNHEQDGGLSGSPLFL 271 (362)
Q Consensus 198 ~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~---~~g~dGiv~---~NT~~~~~~~~~~~~~~~~GGlSG~~i~~ 271 (362)
.|.-.- . -.++=+|= ....+++++.. +.|+|=|-+ ..|. .... +-.+
T Consensus 98 aR~l~G----~--~~iiG~S~----~~~~e~~~a~~C~~~~gaDY~G~Gp~fpT~---------TK~~--------~~~~ 150 (210)
T TIGR00693 98 ARKLLG----P--DKIIGVST----HNLEELAEAAACELKEGADYIGVGPIFPTP---------TKKD--------AAPP 150 (210)
T ss_pred HHHHCC----C--CCEEEEEE----CCHHHHHHHHHHHHHCCCCEEEECCCCCCC---------CCCC--------CCCC
T ss_conf 998538----9--95798533----798999999987640789888863711588---------7889--------8776
Q ss_pred HHHHHHHHHHHHCCC-CEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 468999999974089-74899967889999999999839997545278770
Q gi|254780434|r 272 KSTIALAKIRQRVGP-KIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 272 ~al~~i~~i~~~~~~-~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
.+++.|+++++.. . ++|+.|.|||.. +-+-+.+.+||+-|-|.|+.|-
T Consensus 151 ~g~e~l~~~~~~~-~h~~P~VAIGGI~~-~n~~~v~~~G~~~vAVvSaI~~ 199 (210)
T TIGR00693 151 VGLELLREIAATS-IHDIPIVAIGGITL-ENVAEVLAAGADGVAVVSAIMQ 199 (210)
T ss_pred CCHHHHHHHHHHC-CCCCCEEEECCCCH-HHHHHHHHCCCCEEEEEEEECC
T ss_conf 4888999999861-78876588759887-8999999728873888651015
No 275
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=95.50 E-value=0.022 Score=35.84 Aligned_cols=71 Identities=13% Similarity=0.189 Sum_probs=48.3
Q ss_pred HHHHHHHHHHCCCCEE--EEEECCCCCHHHHHHHHHCCCCEEEECHHHHC------------------CCHHHHHHHHHH
Q ss_conf 8999999974089748--99967889999999999839997545278770------------------697899999999
Q gi|254780434|r 274 TIALAKIRQRVGPKIA--IIGTGGISSTKDALDKIMAGANLIQLYSAMIY------------------EGISLPKRIIQG 333 (362)
Q Consensus 274 l~~i~~i~~~~~~~i~--IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~------------------~Gp~~~~~I~~~ 333 (362)
..++.++++.- ++| -.+.|||.|+.||.-++-.|||-|=++|+..- +.|.++.++-++
T Consensus 183 ~elv~~v~~~g--rLPVvnFaAGGiATPADAALmMqLG~dGVFVGSGIFKS~dP~krA~AIV~Atthy~dp~~laevS~~ 260 (283)
T cd04727 183 YELVKETAKLG--RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHYDDPEILAEVSEG 260 (283)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 89999999978--9763664267858837799999728987887765457899999999999998465889999999704
Q ss_pred HHHHHHHCCCCCH
Q ss_conf 9999998389977
Q gi|254780434|r 334 LSDFLNKENEVNF 346 (362)
Q Consensus 334 L~~~l~~~G~~si 346 (362)
|.+-|.--..+++
T Consensus 261 LgeaM~Gi~i~~l 273 (283)
T cd04727 261 LGEAMVGIDIASL 273 (283)
T ss_pred CCCCCCCCCHHHC
T ss_conf 6646788881228
No 276
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=95.45 E-value=0.23 Score=28.94 Aligned_cols=104 Identities=19% Similarity=0.170 Sum_probs=61.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCC---CCCC-----CCCCCC---------CCCCCC-CC---CCCC
Q ss_conf 5178650577774888999998764498299980665---5532-----345775---------446322-11---3564
Q gi|254780434|r 210 VPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTT---LSRK-----GVQCSD---------NHEQDG-GL---SGSP 268 (362)
Q Consensus 210 ~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~---~~~~-----~~~~~~---------~~~~~G-Gl---SG~~ 268 (362)
-|.|..|=+.-+.+...++++.++++|+.+++++=-+ ..|. +...+. .....| ++ .+..
T Consensus 125 ~~~wfQLY~~~dr~~~~~li~RA~~aG~~alvlTVD~p~~g~Rerd~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (351)
T cd04737 125 GPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAA 204 (351)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 97089971358879999999999986999899963178878627788629988999872234467775555568898863
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 542468999999974089748999678899999999998399975452
Q gi|254780434|r 269 LFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLY 316 (362)
Q Consensus 269 i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~ 316 (362)
-...+-+-++++++.++ .|| -+-||.+++||..-..+|||.|.|.
T Consensus 205 ~~~~~w~di~~lr~~~~--lpl-ilKGI~~~eDA~~A~~~G~dgIvVS 249 (351)
T cd04737 205 KQKLSPADIEFIAKISG--LPV-IVKGIQSPEDADVAINAGADGIWVS 249 (351)
T ss_pred CCCCCHHHHHHHHHHCC--CCE-EECCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 25799899999998649--985-3236677999999987499889977
No 277
>PRK08782 consensus
Probab=95.42 E-value=0.24 Score=28.86 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=79.6
Q ss_pred HHHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 776555420-6755269830333653221100002343211112244455655312688517865057777488899999
Q gi|254780434|r 152 DYVSGIRLF-FTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAV 230 (362)
Q Consensus 152 dy~~~~~~~-~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~ 230 (362)
+-..+++.+ ..+...+|+-+..|+.- +.+ ..+.+ .... +.+-..-=++ .+-++
T Consensus 30 ~a~~~~eal~~gGi~~iEiTlrt~~a~--------~~i----~~l~~--------~~p~--~~vGaGTV~~----~e~~~ 83 (219)
T PRK08782 30 QARRVADALLEGGLPAIELTLRTPVAI--------EAL----AMLKR--------ELPN--IVIGAGTVLS----ERQLR 83 (219)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHH--------HHH----HHHHH--------HCCC--CEEEEEEECC----HHHHH
T ss_conf 999999999987998799967993399--------999----99998--------6899--4799997058----99999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 87644982999806655532345775446322113564542468999999974089748999678899999999998399
Q gi|254780434|r 231 EVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGA 310 (362)
Q Consensus 231 ~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGA 310 (362)
.+.++|++.++--++ ....+.... .. ++| -.=|++|+.++...+.+|+
T Consensus 84 ~a~~aGA~FiVSP~~---------------------------~~~v~~~a~-~~--~i~--~iPGv~TpSEi~~A~~~G~ 131 (219)
T PRK08782 84 QSVDAGADFLVTPGT---------------------------PAPLARLLA-DA--PIP--AVPGAATPTELLTLMGLGF 131 (219)
T ss_pred HHHHCCCCEEECCCC---------------------------CHHHHHHHH-HC--CCC--EECCCCCHHHHHHHHHCCC
T ss_conf 999849989987899---------------------------799999999-81--997--6478599999999998799
Q ss_pred CEEEECHHHHCCCHHHHHHHH----------------HHHHHHHHHCCC
Q ss_conf 975452787706978999999----------------999999998389
Q gi|254780434|r 311 NLIQLYSAMIYEGISLPKRII----------------QGLSDFLNKENE 343 (362)
Q Consensus 311 s~VQi~Tali~~Gp~~~~~I~----------------~~L~~~l~~~G~ 343 (362)
++|-++-|-.+.|+..++.+. +-+.+||...++
T Consensus 132 ~~vKlFPA~~~Gg~~~lkal~~pfp~~~f~pTGGV~~~N~~~yl~~~~v 180 (219)
T PRK08782 132 RVCKLFPATAVGGLQMLKGLAGPLSELKLCPTGGISETNAAEFLSQPNV 180 (219)
T ss_pred CEEEECCCHHCCCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCE
T ss_conf 9899777322084999999847699981876799898789999807993
No 278
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=95.38 E-value=0.22 Score=29.18 Aligned_cols=91 Identities=18% Similarity=0.242 Sum_probs=59.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCCEEE
Q ss_conf 7865057777488899999876449829998066555323457754463221135645-424689999999740897489
Q gi|254780434|r 212 IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPL-FLKSTIALAKIRQRVGPKIAI 290 (362)
Q Consensus 212 i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i-~~~al~~i~~i~~~~~~~i~I 290 (362)
.++-+|- ...++ +..+.+.|+|-+.+.-- ..+... +.. .|..+..++++.+.. ++|+
T Consensus 96 ~iiG~S~----h~~~e-~~~a~~~g~DYi~~gpv------f~T~tK---------~~~~~~~g~~~l~~~~~~~--~~Pv 153 (196)
T cd00564 96 LIIGVST----HSLEE-ALRAEELGADYVGFGPV------FPTPTK---------PGAGPPLGLELLREIAELV--EIPV 153 (196)
T ss_pred CEEEECC----CCHHH-HHHHHHHCCCEEEECCC------CCCCCC---------CCCCCCCCHHHHHHHHHHC--CCCE
T ss_conf 7588247----88999-99988709993886465------578988---------8877877889999999867--9998
Q ss_pred EEECCCCCHHHHHHHHHCCCCEEEECHHHHCC-CHH
Q ss_conf 99678899999999998399975452787706-978
Q gi|254780434|r 291 IGTGGISSTKDALDKIMAGANLIQLYSAMIYE-GIS 325 (362)
Q Consensus 291 Ig~GGI~s~~Da~e~l~aGAs~VQi~Tali~~-Gp~ 325 (362)
++.||| +.+++.+.+.+||+-|-+.|+++-. .|.
T Consensus 154 ~AiGGI-~~~ni~~~~~~G~~giAv~s~i~~~~dp~ 188 (196)
T cd00564 154 VAIGGI-TPENAAEVLAAGADGVAVISAITGADDPA 188 (196)
T ss_pred EEECCC-CHHHHHHHHHCCCCEEEEHHHHHCCCCHH
T ss_conf 998589-99999999980999999729977799999
No 279
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.29 E-value=0.25 Score=28.72 Aligned_cols=197 Identities=14% Similarity=0.174 Sum_probs=88.5
Q ss_pred CCEEECCC-CCC--CHHHHHHHHHCCCCEEEC-CCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 97485346-888--677988874036752410-20013687899886268842555410000247777788999876410
Q gi|254780434|r 56 NPLGMAAG-YDK--NAEVPIELLKLGFGFVEI-GTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ 131 (362)
Q Consensus 56 nPiglAaG-~dk--~~~~~~~l~~~G~G~v~~-ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~ 131 (362)
-|| ..| .|. -.+.++.+.+.|..++++ || |-+-. -+ .-.....+.+...+..
T Consensus 10 TPF--~~g~iD~~~l~~~i~~l~~~Gv~gi~v~Gs-tGE~~---------~L------------s~eEr~~vi~~~~~~~ 65 (279)
T cd00953 10 TPF--TGNKIDKEKFKKHCENLISKGIDYVFVAGT-TGLGP---------SL------------SFQEKLELLKAYSDIT 65 (279)
T ss_pred CCC--CCCCCCHHHHHHHHHHHHHCCCCEEEECCH-HHHHH---------HC------------CHHHHHHHHHHHHHHC
T ss_conf 784--959679999999999999779999997813-12165---------58------------9999999999999967
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 00121000110454246788776555420675526983033365322110000234321111224445565531268851
Q gi|254780434|r 132 PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVP 211 (362)
Q Consensus 132 ~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~P 211 (362)
.++++-++.. ++++.+ +..+.++++ +||++- +..|..-. ..+.+.+.+....+.. .+|
T Consensus 66 --~~vi~~vg~~-~~~~ai-~la~~A~~~--Gad~i~--~~pP~y~~---~~~~~~l~~yf~~va~-----------~lP 123 (279)
T cd00953 66 --DKVIFQVGSL-NLEESI-ELARAAKSF--GIYAIA--SLPPYYFP---GIPEEWLIKYFTDISS-----------PYP 123 (279)
T ss_pred --CCEEEEECCC-CHHHHH-HHHHHHHHC--CCCEEE--EECCCCCC---CCCHHHHHHHHHHHHH-----------HCC
T ss_conf --9818997778-799999-999999977--999899--76886789---9999999999999985-----------098
Q ss_pred EEEECCCCCCHHHH-HHHHHHHHHC-C-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 78650577774888-9999987644-9-8299980665553234577544632211356454246899999997408974
Q gi|254780434|r 212 IFLKISPDLSEEEL-DDIAVEVLSH-K-VEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKI 288 (362)
Q Consensus 212 i~vKLsPd~~~~~i-~~ia~~a~~~-g-~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i 288 (362)
+++=--|..+..++ .+++..+.+. + +-|+= +++ |. ...+.++++ ..+++
T Consensus 124 i~lYn~P~~tg~~l~~~~~~~L~~~~~~v~giK--ds~-------------------~d------~~~~~~~~~-~~~~~ 175 (279)
T cd00953 124 TFIYNYPKATGYDINARMAKEIKKAGGDIIGVK--DTN-------------------ED------ISHMLEYKR-LVPDF 175 (279)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEE--CCC-------------------CC------HHHHHHHHH-HCCCC
T ss_conf 769967753588889999999981799889997--387-------------------69------999999998-48994
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHH
Q ss_conf 89996788999999999983999754527877069789999999
Q gi|254780434|r 289 AIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQ 332 (362)
Q Consensus 289 ~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~ 332 (362)
.+. +| +-...+..+.+||+-.-.+++-++ |..+.+|.+
T Consensus 176 ~v~-~G---~d~~~~~~l~~Ga~G~i~~~~n~~--P~~~~~l~~ 213 (279)
T cd00953 176 KVY-SG---PDSLIFSALRSGLDGSVAAASNYL--PEVFVKIKD 213 (279)
T ss_pred EEE-CC---CHHHHHHHHHCCCEEEEEHHHHHH--HHHHHHHHH
T ss_conf 785-69---579999999809979997089885--999999999
No 280
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.29 E-value=0.26 Score=28.59 Aligned_cols=192 Identities=20% Similarity=0.218 Sum_probs=104.8
Q ss_pred EECCEECCCCEE--ECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHH
Q ss_conf 888733599748--534688867798887403675241020013687899886268842555410000247777788999
Q gi|254780434|r 48 KVAGISLSNPLG--MAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFS 125 (362)
Q Consensus 48 ~~~Gl~~~nPig--lAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~ 125 (362)
=++-++-++|-- +...+|. .+..+.+...|+.++.+=| + |++|. |.-..++
T Consensus 43 iIaEiKraSPSkG~i~~~~dp-~~iA~~Y~~~GA~aiSVLT---e-------~~~F~----------------Gs~~~L~ 95 (247)
T PRK13957 43 IIAECKRKSPSAGELRADYHP-VQIAKTYETLGASAISVLT---D-------QSYFG----------------GSLEDLK 95 (247)
T ss_pred EEEEEECCCCCCCCCCCCCCH-HHHHHHHHHCCCCEEEECC---C-------CCCCC----------------CCHHHHH
T ss_conf 999762589998875788999-9999999977992899827---8-------56679----------------9899999
Q ss_pred HHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87641000121000110454246788776555420675526983033365322110000234321111224445565531
Q gi|254780434|r 126 RLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIK 205 (362)
Q Consensus 126 ~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~ 205 (362)
.+++. .+.|+-- .|.+.|-.+..+...-+||++=|=.+| -+++.+.+++......
T Consensus 96 ~v~~~-v~lPiLr--------KDFIid~~QI~ea~~~GADaILLIaa~---------L~~~~l~~l~~~A~~l------- 150 (247)
T PRK13957 96 SVSSE-LKIPVLR--------KDFILDEIQIREARAFGASAILLIVRI---------LTPSQIKSFLKHASSL------- 150 (247)
T ss_pred HHHHH-CCCCEEE--------EEEECCHHHHHHHHHCCCCEEHHHHHC---------CCHHHHHHHHHHHHHH-------
T ss_conf 99985-7998474--------112064999999997399851268850---------8999999999999983-------
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 26885178650577774888999998764498299980665553234577544632211356454246899999997408
Q gi|254780434|r 206 TGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVG 285 (362)
Q Consensus 206 ~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~ 285 (362)
..-++|-+. +. .++ +.+.+.+++ ++.+|. |. +.+ +.+.+.....+....+
T Consensus 151 ---Gle~LvEvH---~~---~El-~~al~~~~~-iIGINN---Rn-L~t---------------f~vd~~~~~~l~~~ip 200 (247)
T PRK13957 151 ---GMDVLVEVH---TE---DEA-KLALDCGAE-IIGINT---RD-LDT---------------FQIHQNLVEEVAAFLP 200 (247)
T ss_pred ---CCEEEEEEC---CH---HHH-HHHHHCCCC-EEEEEC---CC-CCC---------------CCCCHHHHHHHHHHCC
T ss_conf ---881562558---99---999-999848998-898745---77-321---------------4639889999984389
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 9748999678899999999998399975452787706
Q gi|254780434|r 286 PKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYE 322 (362)
Q Consensus 286 ~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~ 322 (362)
.+..+|+-.||.+.+|+.. +..++++|-||+++|-+
T Consensus 201 ~~~~~VsESGI~~~~di~~-l~~~~da~LIGeslMk~ 236 (247)
T PRK13957 201 PNIVKVGESGIESRSDLDK-FRKLVDAALIGTYFMEK 236 (247)
T ss_pred CCCEEEECCCCCCHHHHHH-HHHHCCEEEECHHHHCC
T ss_conf 9987996789999999999-99739999988677569
No 281
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=95.23 E-value=0.042 Score=33.99 Aligned_cols=70 Identities=14% Similarity=0.306 Sum_probs=49.1
Q ss_pred HHHHHHHHHCCCCEEE--EEECCCCCHHHHHHHHHCCCCEEEECHHHH------------------CCCHHHHHHHHHHH
Q ss_conf 9999999740897489--996788999999999983999754527877------------------06978999999999
Q gi|254780434|r 275 IALAKIRQRVGPKIAI--IGTGGISSTKDALDKIMAGANLIQLYSAMI------------------YEGISLPKRIIQGL 334 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~I--Ig~GGI~s~~Da~e~l~aGAs~VQi~Tali------------------~~Gp~~~~~I~~~L 334 (362)
.++.++++. +++|+ .+.|||-++.||.-++..|||-|=++|+.. |..|.++.++-++|
T Consensus 196 elv~~~~~~--grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~AIV~A~~~~ddp~~~aevs~~l 273 (296)
T COG0214 196 ELVKEVAKL--GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKAIVEATTHYDDPEVLAEVSEGL 273 (296)
T ss_pred HHHHHHHHH--CCCCEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999999983--988747422567688167999998189847865643378998999999999997148889999999874
Q ss_pred HHHHHHCCCCCH
Q ss_conf 999998389977
Q gi|254780434|r 335 SDFLNKENEVNF 346 (362)
Q Consensus 335 ~~~l~~~G~~si 346 (362)
.+-|.--..+++
T Consensus 274 g~~M~Gi~i~~l 285 (296)
T COG0214 274 GEAMKGIDISEL 285 (296)
T ss_pred CCCCCCCCHHHC
T ss_conf 625578874547
No 282
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=95.21 E-value=0.13 Score=30.72 Aligned_cols=232 Identities=16% Similarity=0.172 Sum_probs=124.0
Q ss_pred CCCCEEEECCEECC--CCEEECCCCCC-CHHHH----HHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECC
Q ss_conf 96311688873359--97485346888-67798----8874036752410200136878998862688425554100002
Q gi|254780434|r 42 DPRLNTKVAGISLS--NPLGMAAGYDK-NAEVP----IELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLG 114 (362)
Q Consensus 42 ~~~L~~~~~Gl~~~--nPiglAaG~dk-~~~~~----~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~G 114 (362)
..+--+++.|.++- +|+.+|.=|.- +-|.+ +.+.+.|.-.+-- |-=+||-. | +.
T Consensus 102 ~~~t~v~v~~~~iG~~~~~iIAGPCsvES~eQi~~~A~~vk~~G~~~lRg---------Ga~KPRTs--P--------ys 162 (360)
T PRK12595 102 PEDTIVDVKGEIIGDGNQSFIFGPCAVESYEQVAAVAQALKAKGLKLLRG---------GAFKPRTS--P--------YD 162 (360)
T ss_pred CCCCEEEECCEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEC---------CCCCCCCC--C--------CC
T ss_conf 88877987999977996438956883678999999999999759755725---------55689999--9--------76
Q ss_pred CCCCCHHHHHHHHHHH--HHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 4777778899987641--00012100011045424678877655542067552698303336532211000023432111
Q gi|254780434|r 115 FNNAGYHTVFSRLSKI--QPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLL 192 (362)
Q Consensus 115 l~N~G~~~~~~~l~~~--~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l 192 (362)
|+-.|.+- ++-|++. ..+.|++.-|+.. . -++.+..++|.+-| |-|.+|+.+.+..
T Consensus 163 FqGlG~eG-L~~L~~a~~e~gl~vvTEV~~~-------~----~ve~~~~yvDilqI--------GARnmqNf~LLk~-- 220 (360)
T PRK12595 163 FQGLGVEG-LKILKQVADEYDLAVISEIVNP-------N----DVEVALDYVDVIQI--------GARNMQNFELLKA-- 220 (360)
T ss_pred CCCCCHHH-HHHHHHHHHHHCCCEEEEECCH-------H----HHHHHHHHCCEEEE--------CCHHCCCHHHHHH--
T ss_conf 57684579-9999999998599727985788-------8----99999974868988--------8410359999999--
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 12244455655312688517865057777488899999876449829998066555323457754463221135645424
Q gi|254780434|r 193 IHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLK 272 (362)
Q Consensus 193 ~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~ 272 (362)
+ ..+.+||++|=+...+-++....++-....|..-|++|-. ++.+... +-+-..+
T Consensus 221 --v----------g~~~kPVLlKrg~~ati~ewl~AaEyi~~~Gn~~vilceR-----GirT~e~-------~tRntld- 275 (360)
T PRK12595 221 --A----------GRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNDQIILCER-----GIRTYEK-------ATRNTLD- 275 (360)
T ss_pred --H----------HCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEC-----CCCCCCC-------CCCCCCC-
T ss_conf --8----------6139937960799999999999999998679987899917-----7567787-------6688988-
Q ss_pred HHHHHHHHHHHCCCCEEEEE----ECCCCCHH--HHHHHHHCCCCEEEECHH-----HHCC-----CHHHHHHHHHHHHH
Q ss_conf 68999999974089748999----67889999--999999839997545278-----7706-----97899999999999
Q gi|254780434|r 273 STIALAKIRQRVGPKIAIIG----TGGISSTK--DALDKIMAGANLIQLYSA-----MIYE-----GISLPKRIIQGLSD 336 (362)
Q Consensus 273 al~~i~~i~~~~~~~i~IIg----~GGI~s~~--Da~e~l~aGAs~VQi~Ta-----li~~-----Gp~~~~~I~~~L~~ 336 (362)
+..|-.+++.. ++|||. .+|..+.- =+..-+.+|||-+.|=+- .+.. .|.-+.++.++|+.
T Consensus 276 -l~avp~~k~~t--hLPVivDPSH~~G~r~lv~~~a~aa~a~GaDGlmIEvHp~P~~AlSD~~Qql~~~~f~~l~~~l~~ 352 (360)
T PRK12595 276 -ISAVPILKQET--HLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHPDPAVALSDSAQQMDIPEFDRFYDELKP 352 (360)
T ss_pred -HHHHHHHHCCC--CCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf -67889986499--999898996521557589999999997499979998668823215871004899999999999999
Q ss_pred HHHHCC
Q ss_conf 999838
Q gi|254780434|r 337 FLNKEN 342 (362)
Q Consensus 337 ~l~~~G 342 (362)
+.+..+
T Consensus 353 ~~~~~~ 358 (360)
T PRK12595 353 LADKLN 358 (360)
T ss_pred HHHHHC
T ss_conf 999854
No 283
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=95.20 E-value=0.18 Score=29.67 Aligned_cols=213 Identities=23% Similarity=0.317 Sum_probs=116.6
Q ss_pred HHHHHHCCCCEEEC-CCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCC-----CCEE-ECC
Q ss_conf 88874036752410-2001368789988626884255541000024777778899987641000121-----0001-104
Q gi|254780434|r 71 PIELLKLGFGFVEI-GTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPI-----GINL-GAN 143 (362)
Q Consensus 71 ~~~l~~~G~G~v~~-ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi-----~vsI-~~~ 143 (362)
+..|.+.||..+|+ |.=|...+- |+ | +=+.|+.+ +.||+.-++.|| |=|+ |+-
T Consensus 27 ~~~LD~vGfwSLEvWGGATFDaC~-----RF--L------------~EDPW~RL-R~lk~~~pnT~L~MLLRGQNLlGYR 86 (616)
T TIGR01108 27 LEKLDDVGFWSLEVWGGATFDACI-----RF--L------------NEDPWERL-RELKKALPNTKLQMLLRGQNLLGYR 86 (616)
T ss_pred HHHHHHCCCEEEEECCCHHHHHHH-----HH--C------------CCCHHHHH-HHHHHHCCCCCHHHHHCCCCCCCCC
T ss_conf 987502495565202441055784-----42--4------------88855899-9999735787512342045423441
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCE--EEEECCCCC
Q ss_conf 54246788776555420675526983033365322110000234321111224445565531268-851--786505777
Q gi|254780434|r 144 KDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGK-FVP--IFLKISPDL 220 (362)
Q Consensus 144 ~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~-~~P--i~vKLsPd~ 220 (362)
.-.+|-++.|++. .+..+.|.|=| | -.|-|+=+|..-+.+++ +... ++- |-=-+||-=
T Consensus 87 HYADDVVe~FV~~--a~~NG~DVFRi-F--------DALND~RNl~~ai~a~K--------k~g~dHvQg~iSYTtSPvH 147 (616)
T TIGR01108 87 HYADDVVEAFVKK--AVENGLDVFRI-F--------DALNDPRNLQKAIEAAK--------KHGADHVQGAISYTTSPVH 147 (616)
T ss_pred CCCHHHHHHHHHH--HHHCCCEEEEE-E--------CCCCCHHHHHHHHHHHH--------HHCCCEEEEEEECCCCCHH
T ss_conf 5843689999999--99759808995-1--------24588778999999999--------7389789999712468436
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE----EECCC
Q ss_conf 74888999998764498299980665553234577544632211356454246899999997408974899----96788
Q gi|254780434|r 221 SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAII----GTGGI 296 (362)
Q Consensus 221 ~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~II----g~GGI 296 (362)
|-+...++++.+.+.|+|-|++ .|+.|+++|.. +-++|+.+++.++ .+||= ..-|-
T Consensus 148 Tl~~yl~la~~L~~~G~DSI~I----KDMaGlLTP~~---------------AYELV~alK~~~~-n~pvhLH~H~TtGm 207 (616)
T TIGR01108 148 TLEKYLELAKELLEMGVDSICI----KDMAGLLTPKV---------------AYELVSALKKEFG-NLPVHLHSHATTGM 207 (616)
T ss_pred HHHHHHHHHHHHHHHCCCEEEE----ECCCCCCCHHH---------------HHHHHHHHHHHCC-CEEEEEECCCCHHH
T ss_conf 7888999999999818860552----02004644158---------------9999999974239-74688632472337
Q ss_pred CCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999839997545278770697899999999999999838997
Q gi|254780434|r 297 SSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVN 345 (362)
Q Consensus 297 ~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~s 345 (362)
.+ ---++-+.||||.+-=|=+-+..|.+... -+-|-..|+..||++
T Consensus 208 A~-~AllkA~EAG~d~iDTAisS~S~gtSHPp--tE~lv~~L~~~gyD~ 253 (616)
T TIGR01108 208 AE-MALLKAIEAGADMIDTAISSMSGGTSHPP--TETLVAALRGTGYDT 253 (616)
T ss_pred HH-HHHHHHHHCCCCCCHHCCCCCCCCCCCCH--HHHHHHHHHCCCCCC
T ss_conf 99-99998887078800200552347888874--799999970578743
No 284
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.17 E-value=0.14 Score=30.48 Aligned_cols=233 Identities=18% Similarity=0.246 Sum_probs=116.8
Q ss_pred CEEEE--CCEECC--CCEEECCCCC--CCHH----HHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECC
Q ss_conf 11688--873359--9748534688--8677----988874036752410200136878998862688425554100002
Q gi|254780434|r 45 LNTKV--AGISLS--NPLGMAAGYD--KNAE----VPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLG 114 (362)
Q Consensus 45 L~~~~--~Gl~~~--nPiglAaG~d--k~~~----~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~G 114 (362)
..+++ .++.|- +|+.+-||++ -+-| ..+.+.++|..+.--|- .+||+ +| +.
T Consensus 85 ~~v~~~~G~v~~G~~~~~~iiAGPCsvEs~eq~~~~A~~vk~~Ga~~lRgGa--~KPRT---sP--------------ys 145 (352)
T PRK13396 85 VVVPTPNGPVTFGENHPVVVVAGPCSVENEEMIVETAKRVKAAGAKFLRGGA--YKPRT---SP--------------YA 145 (352)
T ss_pred EEEECCCCCEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEECCCC--CCCCC---CC--------------CC
T ss_conf 3995689877747997799996787568999999999999983998782650--24789---98--------------54
Q ss_pred CCCCCHHHHHHHHHHH--HHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 4777778899987641--00012100011045424678877655542067552698303336532211000023432111
Q gi|254780434|r 115 FNNAGYHTVFSRLSKI--QPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLL 192 (362)
Q Consensus 115 l~N~G~~~~~~~l~~~--~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l 192 (362)
|+-.| +.-++-|++. ..+.|+..-|+-. +-++.+..++|.+-| |-|.+|+.+.|
T Consensus 146 FqGlG-eeGL~~L~~ak~e~GLpvvTEV~~~-----------~~ve~v~~~~DilQI--------GARn~qNf~LL---- 201 (352)
T PRK13396 146 FQGHG-ESALELLAAAREATGLGIITEVMDA-----------ADLDKIAEVADVIQV--------GARNMQNFSLL---- 201 (352)
T ss_pred CCCCC-HHHHHHHHHHHHHHCCCEEEEECCH-----------HHHHHHHHHCCEEEE--------CCHHHCCHHHH----
T ss_conf 35870-8799999999998699726886799-----------999999865888998--------92540599999----
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 12244455655312688517865057777488899999876449829998066555323457754463221135645424
Q gi|254780434|r 193 IHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLK 272 (362)
Q Consensus 193 ~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~ 272 (362)
.++ ..+.+||++|=+...+-++....++.+...|.+-+++|-. ++...... + .+...+
T Consensus 202 ~~~----------g~t~kPVllKrg~~~ti~ewl~AaEyi~~~Gn~~viLcER-----Girtfe~~-----~-~RntlD- 259 (352)
T PRK13396 202 KKV----------GAQDKPVLLKRGMSATIDEWLMAAEYILAAGNPNVILCER-----GIRTFDRQ-----Y-TRNTLD- 259 (352)
T ss_pred HHH----------HCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEC-----CCCCCCCC-----C-CCCCCC-
T ss_conf 998----------5469807973788899999986999999769985899948-----97756676-----5-467755-
Q ss_pred HHHHHHHHHHHCCCCEEEEEE----CCCCCH--HHHHHHHHCCCCEEEECHH-----HHCCCH-----HHHHHHHHHHHH
Q ss_conf 689999999740897489996----788999--9999999839997545278-----770697-----899999999999
Q gi|254780434|r 273 STIALAKIRQRVGPKIAIIGT----GGISST--KDALDKIMAGANLIQLYSA-----MIYEGI-----SLPKRIIQGLSD 336 (362)
Q Consensus 273 al~~i~~i~~~~~~~i~IIg~----GGI~s~--~Da~e~l~aGAs~VQi~Ta-----li~~Gp-----~~~~~I~~~L~~ 336 (362)
+..|-.+++.. ++|||.- .|-.+. .=+..-+.+|||-+.+=+- ....|| .-+.++.++|+
T Consensus 260 -l~aip~~k~~t--hlPVi~DPSH~~G~r~~V~~la~AAva~GaDGL~iEvHp~P~~AlSDg~Q~l~p~~f~~l~~~l~- 335 (352)
T PRK13396 260 -LSVIPVLRSLT--HLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPERFDRLMQELA- 335 (352)
T ss_pred -HHHHHHHHHCC--CCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH-
T ss_conf -78879997489--99889789864578727999999999839988999846880115787523589999999999999-
Q ss_pred HHHHCCCCCHHHHHCCCC
Q ss_conf 999838997789616975
Q gi|254780434|r 337 FLNKENEVNFENIRGSYT 354 (362)
Q Consensus 337 ~l~~~G~~si~e~iG~~~ 354 (362)
.|.+++|+..
T Consensus 336 --------~i~~~vgr~~ 345 (352)
T PRK13396 336 --------VIGKTVGRWP 345 (352)
T ss_pred --------HHHHHHCCCC
T ss_conf --------9999967898
No 285
>TIGR00674 dapA dihydrodipicolinate synthase; InterPro: IPR005263 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta-semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue . Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC, IPR005264 from INTERPRO) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Sinorhizobium meliloti protein mosA , which is involved in the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry . Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel. This family represents a subclass of dihydrodipicolinate synthase. ; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process.
Probab=95.17 E-value=0.29 Score=28.35 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=7.6
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q ss_conf 0697899999999999999
Q gi|254780434|r 321 YEGISLPKRIIQGLSDFLN 339 (362)
Q Consensus 321 ~~Gp~~~~~I~~~L~~~l~ 339 (362)
-..+.-.++|+.-|...++
T Consensus 222 ~G~~~~A~EIh~kL~~L~~ 240 (288)
T TIGR00674 222 EGDFAEAREIHQKLMPLFK 240 (288)
T ss_pred CCCHHHHHHHHHHHHHHHH
T ss_conf 3897899999987888988
No 286
>pfam02219 MTHFR Methylenetetrahydrofolate reductase. This family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from bacteria and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The structure for this domain is known to be a TIM barrel.
Probab=95.16 E-value=0.29 Score=28.34 Aligned_cols=132 Identities=17% Similarity=0.195 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
Q ss_conf 42467887765554206755269830333653221100002343211112244455655312688517865057777488
Q gi|254780434|r 145 DSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEE 224 (362)
Q Consensus 145 ~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~ 224 (362)
++.+.-.|+..+.+++..+|||+.- +.+.+.+.+.++++.+. ....++||++-+-|-.+..+
T Consensus 153 ~a~~~~~di~~L~~Ki~aGA~f~iT----------Q~~fd~~~~~~f~~~~~--------~~Gi~~PIi~GI~Pi~s~~~ 214 (286)
T pfam02219 153 EAKSWQADLKYLKEKVDAGADFIIT----------QLFFDVDNFLRFVDRCR--------AAGIDIPIIPGIMPITSYKS 214 (286)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHH----------HHEECHHHHHHHHHHHH--------HCCCCCEEECCCEEECCHHH
T ss_conf 5121999999999999846105364----------35324999999999999--------74998204215211146889
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC-CHHHHH
Q ss_conf 8999998764498299980665553234577544632211356454246899999997408974899967889-999999
Q gi|254780434|r 225 LDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGIS-STKDAL 303 (362)
Q Consensus 225 i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~-s~~Da~ 303 (362)
+..+.+ .-|+.+-. .++..+.+.-++.-..-.+ ||. ..+.+.
T Consensus 215 ~~~~~~------~~Gi~iP~------------------------------~l~~~l~~~~~~~e~~~~~-gi~~a~e~~~ 257 (286)
T pfam02219 215 LKRIAK------LSGVSIPQ------------------------------ELIDRLEPIKDDDEAVKSI-GIELAVEMCK 257 (286)
T ss_pred HHHHHH------HCCCCCCH------------------------------HHHHHHHHCCCCHHHHHHH-HHHHHHHHHH
T ss_conf 999997------35998949------------------------------9999998547999999999-9999999999
Q ss_pred HHHHCCCCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 9998399975452787706978999999999
Q gi|254780434|r 304 DKIMAGANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 304 e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
+.+..|++-+.+|| ++-+..+.+|++.|
T Consensus 258 ~l~~~Gv~GiH~yt---~N~~~~~~~Il~~l 285 (286)
T pfam02219 258 KLLAEGVPGLHFYT---LNREEAILEILEQL 285 (286)
T ss_pred HHHHCCCCEEEEEC---CCCHHHHHHHHHHC
T ss_conf 99977998669950---89759999999972
No 287
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=95.16 E-value=0.1 Score=31.30 Aligned_cols=86 Identities=16% Similarity=0.313 Sum_probs=58.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78650577774888999998764498299980665553234577544632211356454246899999997408974899
Q gi|254780434|r 212 IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAII 291 (362)
Q Consensus 212 i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~II 291 (362)
+-+-++. .++..+-++++.++|+|-+++ .| ... -| ...++.|+++++.. ++++|
T Consensus 218 VgAAVGv---~~d~~eR~~aLv~AGvDvlvI-Dt---------AHG------hS-----~~vi~~vk~iK~~~-p~~~v- 271 (479)
T PRK07807 218 VAAAVGI---NGDVAAKARALLEAGVDVLVI-DT---------AHG------HQ-----EKMLEAIRAVRALD-PGVPL- 271 (479)
T ss_pred EEEEECC---CCCHHHHHHHHHHCCCCEEEE-EC---------CCC------CH-----HHHHHHHHHHHHHC-CCCCE-
T ss_conf 7887257---845899999999769989997-54---------576------64-----89999999998408-98857-
Q ss_pred EECCCCCHHHHHHHHHCCCCEE-------EECHHHHCCC
Q ss_conf 9678899999999998399975-------4527877069
Q gi|254780434|r 292 GTGGISSTKDALDKIMAGANLI-------QLYSAMIYEG 323 (362)
Q Consensus 292 g~GGI~s~~Da~e~l~aGAs~V-------Qi~Tali~~G 323 (362)
-+|-|-+++.|.+.+.||||+| .+||.=+--|
T Consensus 272 iaGNvaT~~~a~~Li~aGad~ikvGiG~GSiCtTr~v~g 310 (479)
T PRK07807 272 VAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTG 310 (479)
T ss_pred EEEEHHHHHHHHHHHHCCCCEEECCCCCCCCEECCCCCC
T ss_conf 874320299999999739997631555783243463237
No 288
>PRK06267 hypothetical protein; Provisional
Probab=95.02 E-value=0.31 Score=28.08 Aligned_cols=132 Identities=16% Similarity=0.196 Sum_probs=93.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 17865057777488899999876449829998066555323457754463221135645424689999999740897489
Q gi|254780434|r 211 PIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAI 290 (362)
Q Consensus 211 Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~I 290 (362)
-++|-|+ .+.+++.+.+..+.+.++|-|.+ |.....+++.-...+ ++.+ .-.+++|+.+|=.+ +++-|
T Consensus 172 G~ivGlG--ET~ed~~~~~~~lkel~~d~I~I-~~f~P~~gTP~en~p------~~t~--~e~lk~iA~~RL~~-Pki~I 239 (324)
T PRK06267 172 TIILGLG--ETEDDIELLLNLIEELNLDRITF-YSLNPQKETIFEGKP------SPTT--LEYMNWVSSVRLNF-PKIKI 239 (324)
T ss_pred EEEEECC--CCHHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCCCCCCC------CCCH--HHHHHHHHHHHHHC-CCCCC
T ss_conf 4687379--88999999999999769997632-584589999889999------9899--99999999999968-87125
Q ss_pred EEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHH-HHHCC-CCCHHHHHCCCC
Q ss_conf 99678899999999998399975452787706978999999999999-99838-997789616975
Q gi|254780434|r 291 IGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDF-LNKEN-EVNFENIRGSYT 354 (362)
Q Consensus 291 Ig~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~-l~~~G-~~si~e~iG~~~ 354 (362)
++.-.+.....+--.++|||+.+-..-.|-+-|-...+++-+|...- .+-+| |++++-+.|...
T Consensus 240 ~~~t~~~~~~ni~~ll~aGan~itkfp~~~~~~~~~~~~~e~~~~~~~r~~~~~~~~~~~~~~~~~ 305 (324)
T PRK06267 240 ITGTWVDKLTNIGPLVMAGSNVITKFPLFSMYGKKEGKTVENEIKSTGRELYGSFSDLDLLKGGKS 305 (324)
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC
T ss_conf 357653571100187764776301041088636287777999999964666345431887568430
No 289
>KOG1606 consensus
Probab=94.93 E-value=0.15 Score=30.20 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=56.6
Q ss_pred HHHHHHHHHHCCCCEEE--EEECCCCCHHHHHHHHHCCCCEEEECHHHH------------------CCCHHHHHHHHHH
Q ss_conf 89999999740897489--996788999999999983999754527877------------------0697899999999
Q gi|254780434|r 274 TIALAKIRQRVGPKIAI--IGTGGISSTKDALDKIMAGANLIQLYSAMI------------------YEGISLPKRIIQG 333 (362)
Q Consensus 274 l~~i~~i~~~~~~~i~I--Ig~GGI~s~~Da~e~l~aGAs~VQi~Tali------------------~~Gp~~~~~I~~~ 333 (362)
..++++..+. +++|+ .+.|||.++.||.-++-.|.|-|-++|+.. |..|...-++-.+
T Consensus 196 ~dLv~~t~q~--GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~aiVqAvthy~dp~~L~evS~~ 273 (296)
T KOG1606 196 YDLVKQTKQL--GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAIVQAVTHYDDPAKLAEVSSG 273 (296)
T ss_pred HHHHHHHHHC--CCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 8999999970--87745874256758816799999808984886554236898899999999998705888999987415
Q ss_pred HHHHHHHCCCCCHHHHHCC
Q ss_conf 9999998389977896169
Q gi|254780434|r 334 LSDFLNKENEVNFENIRGS 352 (362)
Q Consensus 334 L~~~l~~~G~~si~e~iG~ 352 (362)
|.+.|.--...++.+..+.
T Consensus 274 Lg~aM~g~~i~~~~~~~f~ 292 (296)
T KOG1606 274 LGEAMVGISIQSIKEARFA 292 (296)
T ss_pred HHHHHHCCCCCCHHHHHCC
T ss_conf 7877525544502444212
No 290
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=94.80 E-value=0.17 Score=29.82 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=51.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 88517865057777488899999876449829998066555323457754463221135645424689999999740897
Q gi|254780434|r 208 KFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPK 287 (362)
Q Consensus 208 ~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~ 287 (362)
..+|+++-= . .+.+...|+||+.+.-. -.-+.++|+.++++
T Consensus 70 ~gv~lIIND------~-----~dlA~~~gADGVHlGq~----------------------------d~~~~~aR~~lg~~ 110 (221)
T PRK06512 70 AGAAALIAG------D-----TRIAGRVKADGLHIEGN----------------------------AAALAEAIEKHAPK 110 (221)
T ss_pred CCCCEEECC------C-----HHHHHHCCCCEEEECCC----------------------------CCCHHHHHHHHCCC
T ss_conf 299199889------7-----99999709986652687----------------------------53199999984788
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCEEEECH
Q ss_conf 489996788999999999983999754527
Q gi|254780434|r 288 IAIIGTGGISSTKDALDKIMAGANLIQLYS 317 (362)
Q Consensus 288 i~IIg~GGI~s~~Da~e~l~aGAs~VQi~T 317 (362)
. |||++...+-+++.+--.+|||.|.++.
T Consensus 111 ~-IIG~~~~~s~~~A~~A~e~GADYv~fG~ 139 (221)
T PRK06512 111 M-IVGFGNLRDRHGAMEVGELQPDYLFFGK 139 (221)
T ss_pred C-EEEEECCCCHHHHHHHHHCCCCEEEECC
T ss_conf 6-7864057889999999973998576578
No 291
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=94.74 E-value=0.37 Score=27.59 Aligned_cols=101 Identities=20% Similarity=0.289 Sum_probs=61.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78650577774888999998764498299980665553234577544632211356454246899999997408974899
Q gi|254780434|r 212 IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAII 291 (362)
Q Consensus 212 i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~II 291 (362)
.++-+|-. .+++ +..+.+.|+|=|.+..- ..++... ++ .+..+..++++++.. .+|++
T Consensus 105 ~iIG~S~h----~~ee-a~~A~~~g~DYv~~Gpi------fpT~tK~-------~~--~~~G~~~l~~~~~~~--~iP~v 162 (211)
T COG0352 105 LIIGLSTH----DLEE-ALEAEELGADYVGLGPI------FPTSTKP-------DA--PPLGLEGLREIRELV--NIPVV 162 (211)
T ss_pred CEEEEECC----CHHH-HHHHHHCCCCEEEECCC------CCCCCCC-------CC--CCCCHHHHHHHHHHC--CCCEE
T ss_conf 78983049----9999-99987639999998886------7889998-------87--746789999999827--99989
Q ss_pred EECCCCCHHHHHHHHHCCCCEEEECHHHHCC-C-HHHHHHHHHHHH
Q ss_conf 9678899999999998399975452787706-9-789999999999
Q gi|254780434|r 292 GTGGISSTKDALDKIMAGANLIQLYSAMIYE-G-ISLPKRIIQGLS 335 (362)
Q Consensus 292 g~GGI~s~~Da~e~l~aGAs~VQi~Tali~~-G-p~~~~~I~~~L~ 335 (362)
+.|||. .+.+.+.+.+||+-|-+-|+++.. . ...++++.+-+.
T Consensus 163 AIGGi~-~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~ 207 (211)
T COG0352 163 AIGGIN-LENVPEVLEAGADGVAVVSAITSAADPAAAAKALRNALE 207 (211)
T ss_pred EECCCC-HHHHHHHHHHCCCEEEEHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 984889-999999998298769726686607988999999999987
No 292
>KOG2550 consensus
Probab=94.71 E-value=0.17 Score=29.81 Aligned_cols=68 Identities=19% Similarity=0.352 Sum_probs=49.1
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 99999876449829998066555323457754463221135645424689999999740897489996788999999999
Q gi|254780434|r 226 DDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDK 305 (362)
Q Consensus 226 ~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~ 305 (362)
..-.+.+.++|+|-|++- .+.. ..++ -+++|+++++.+ ++++||| |-|-+.+.|.+.
T Consensus 253 K~rl~ll~~aGvdvviLD----------SSqG---------nS~~--qiemik~iK~~y-P~l~Via-GNVVT~~qa~nL 309 (503)
T KOG2550 253 KERLDLLVQAGVDVVILD----------SSQG---------NSIY--QLEMIKYIKETY-PDLQIIA-GNVVTKEQAANL 309 (503)
T ss_pred HHHHHHHHHCCCCEEEEE----------CCCC---------CCHH--HHHHHHHHHHHC-CCCEEEC-CCEEEHHHHHHH
T ss_conf 677888663488689996----------6888---------5045--799999998668-8863431-655338889999
Q ss_pred HHCCCCEEEEC
Q ss_conf 98399975452
Q gi|254780434|r 306 IMAGANLIQLY 316 (362)
Q Consensus 306 l~aGAs~VQi~ 316 (362)
|.||||-+-|+
T Consensus 310 I~aGaDgLrVG 320 (503)
T KOG2550 310 IAAGADGLRVG 320 (503)
T ss_pred HHCCCCEEEEC
T ss_conf 87367605752
No 293
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=94.68 E-value=0.38 Score=27.50 Aligned_cols=161 Identities=13% Similarity=0.074 Sum_probs=87.2
Q ss_pred HHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99987641000121000110454246788776555420675526983033365322110000234321111224445565
Q gi|254780434|r 123 VFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEE 202 (362)
Q Consensus 123 ~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~ 202 (362)
+.++|++..++.+|.+-+ +..++.... .+ ..+..+||++.+-=+++ .+.+...+.+. +
T Consensus 42 ~v~~lk~~~p~~~I~~Dl-K~~D~g~~~---~~--~~~~~Gad~itVh~~~~----------~~ti~~a~~~a---~--- 99 (206)
T TIGR03128 42 AVKEMKEAFPDRKVLADL-KTMDAGEYE---AE--QAFAAGADIVTVLGVAD----------DATIKGAVKAA---K--- 99 (206)
T ss_pred HHHHHHHHCCCCEEEEEE-EECCCHHHH---HH--HHHHCCCCEEEEECCCC----------HHHHHHHHHHH---H---
T ss_conf 999999878999799995-044743899---99--99972898999943489----------79999999999---9---
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 53126885178650577774888999998764498299980665553234577544632211356454246899999997
Q gi|254780434|r 203 KIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQ 282 (362)
Q Consensus 203 ~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~ 282 (362)
...+.+.+-+.. ..+....++.+.+.|+|++.+.... + ...........+..+++
T Consensus 100 ----~~~~~v~vdl~~---~~~~~~~a~~~~~~g~d~v~~h~g~-d-----------------~~~~~~~~~~~~~~~~~ 154 (206)
T TIGR03128 100 ----KHGKEVQVDLIN---VKDKVKRAKELKELGADYIGVHTGL-D-----------------EQAKGQNPFEDLQTILK 154 (206)
T ss_pred ----HCCCEEEEEECC---CCCHHHHHHHHHHCCCCEEEEECCC-C-----------------HHHCCCCCHHHHHHHHH
T ss_conf ----739979999747---8988999999997589889950250-0-----------------44326798899999986
Q ss_pred HCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC--CHH-HHHHHHHH
Q ss_conf 4089748999678899999999998399975452787706--978-99999999
Q gi|254780434|r 283 RVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYE--GIS-LPKRIIQG 333 (362)
Q Consensus 283 ~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~--Gp~-~~~~I~~~ 333 (362)
...+ +-++++|=-+...+.+.+.+|||.|=++++ +++ .|. ..++|.++
T Consensus 155 ~~~~--~~i~v~gGi~~~t~~~ai~~Gad~vVVGR~-It~A~dP~~aa~~i~e~ 205 (206)
T TIGR03128 155 LVKE--ARVAVAGGINLDTIPDVIKLGPDIVIVGGA-ITKAADPAEAARQIRKL 205 (206)
T ss_pred CCCC--CCEEECCCCCCCCHHHHHHCCCCEEEECCC-CCCCCCHHHHHHHHHHH
T ss_conf 2578--736367986835699998669999998961-24799999999999974
No 294
>pfam02581 TMP-TENI Thiamine monophosphate synthase/TENI. Thiamine monophosphate synthase (TMP) (EC:2.5.1.3) catalyses the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate. This Pfam family also includes the regulatory protein TENI.
Probab=94.65 E-value=0.23 Score=28.98 Aligned_cols=85 Identities=20% Similarity=0.270 Sum_probs=55.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78650577774888999998764498299980665553234577544632211356454246899999997408974899
Q gi|254780434|r 212 IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAII 291 (362)
Q Consensus 212 i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~II 291 (362)
.++-.|-. ...+ +..+.+.|+|-+++.-- ..+... +...|..+..++++.+.. ++|++
T Consensus 96 ~iiG~S~h----~~~e-~~~a~~~gaDYi~~gpv------f~T~sK---------~~~~~~g~~~~~~~~~~~--~~Pv~ 153 (180)
T pfam02581 96 KIIGVSTH----TLEE-ALEAEALGADYIGFGPV------FPTPTK---------PDAPPLGLEGLRAIAEAV--NIPVV 153 (180)
T ss_pred CEEEECCC----CHHH-HHHHHHCCCCCEEECCC------CCCCCC---------CCCCCCCHHHHHHHHHHC--CCCEE
T ss_conf 68974478----8999-99998719980887476------777999---------998878989999999858--99999
Q ss_pred EECCCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf 9678899999999998399975452787
Q gi|254780434|r 292 GTGGISSTKDALDKIMAGANLIQLYSAM 319 (362)
Q Consensus 292 g~GGI~s~~Da~e~l~aGAs~VQi~Tal 319 (362)
+.||| +.+++.+.+.+||+-|-+.|++
T Consensus 154 AiGGI-~~~n~~~~~~~Ga~gvAvis~i 180 (180)
T pfam02581 154 AIGGI-TPENVPEVLEAGADGVAVVSAI 180 (180)
T ss_pred EECCC-CHHHHHHHHHCCCCEEEEECCC
T ss_conf 99098-9999999998599889996509
No 295
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=94.63 E-value=0.39 Score=27.42 Aligned_cols=211 Identities=13% Similarity=0.212 Sum_probs=110.3
Q ss_pred HHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHH
Q ss_conf 98887403675241020013687899886268842555410000247777788999876410001210001104542467
Q gi|254780434|r 70 VPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDF 149 (362)
Q Consensus 70 ~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~ 149 (362)
-..++.+.|+-++.+--....|-. + .+ -|+ -+-+| ..+..++.+ .-..|+|+|+-.|. .
T Consensus 39 dA~~leegG~DavivEN~gD~Pf~---k-~v--~~~---tvaaM-------a~iv~~v~r-~v~iPvGvNVLrNd----~ 97 (263)
T COG0434 39 DAAALEEGGVDAVIVENYGDAPFL---K-DV--GPE---TVAAM-------AVIVREVVR-EVSIPVGVNVLRND----A 97 (263)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCC---C-CC--CHH---HHHHH-------HHHHHHHHH-HCCCCCEEEEECCC----C
T ss_conf 999998489768997135788777---7-79--747---88999-------999999987-50766103210266----2
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE----EECCCCCCHHHH
Q ss_conf 8877655542067552698303336532211000023432111122444556553126885178----650577774888
Q gi|254780434|r 150 ILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIF----LKISPDLSEEEL 225 (362)
Q Consensus 150 ~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~----vKLsPd~~~~~i 225 (362)
..-|.- ..+..|||+-+|.-|=- .+.+..-++.-...+...+.. .. .++-++ ||=+-.+....+
T Consensus 98 vaA~~I---A~a~gA~FIRVN~~tg~-----~~tdqGiieg~A~e~~r~r~~--L~--~~v~vlADv~VKHa~~l~~~~~ 165 (263)
T COG0434 98 VAALAI---AYAVGADFIRVNVLTGA-----YATDQGIIEGNAAELARYRAR--LG--SRVKVLADVHVKHAVHLGNRSL 165 (263)
T ss_pred HHHHHH---HHHCCCCEEEEEEEECE-----EECCCCCCCCHHHHHHHHHHH--CC--CCCEEEEECHHHCCCCCCCCCH
T ss_conf 888999---98607977998734342-----763565014448899998986--16--7737976111321532378688
Q ss_pred HHHHHH-HHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
Q ss_conf 999998-7644982999806655532345775446322113564542468999999974089748999678899999999
Q gi|254780434|r 226 DDIAVE-VLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALD 304 (362)
Q Consensus 226 ~~ia~~-a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e 304 (362)
.+.++- ++..++||++++... . |. +..+.-++.+++..+ .|++..-|| +.+.+.+
T Consensus 166 ~~~v~dtver~~aDaVI~tG~~---T---------------G~---~~d~~el~~a~~~~~--~pvlvGSGv-~~eN~~~ 221 (263)
T COG0434 166 EEAVKDTVERGLADAVIVTGSR---T---------------GS---PPDLEELKLAKEAVD--TPVLVGSGV-NPENIEE 221 (263)
T ss_pred HHHHHHHHHCCCCCEEEEECCC---C---------------CC---CCCHHHHHHHHHCCC--CCEEEECCC-CHHHHHH
T ss_conf 9999999970488779995666---7---------------89---999899999986269--878973688-8889999
Q ss_pred HHHCCCCEEEECHHHHCCC-------HHHHHHHHHHHHHHH
Q ss_conf 9983999754527877069-------789999999999999
Q gi|254780434|r 305 KIMAGANLIQLYSAMIYEG-------ISLPKRIIQGLSDFL 338 (362)
Q Consensus 305 ~l~aGAs~VQi~Tali~~G-------p~~~~~I~~~L~~~l 338 (362)
++.. ||-+-++|.+-..| +.-++++.+..++.+
T Consensus 222 ~l~~-adG~IvgT~lK~~G~~~n~VD~~Rv~~~v~~a~~~~ 261 (263)
T COG0434 222 LLKI-ADGVIVGTSLKKGGVTWNPVDLERVRRFVEAARRLR 261 (263)
T ss_pred HHHH-CCCEEEEEEECCCCEECCCCCHHHHHHHHHHHHHHC
T ss_conf 9987-286699786603886368459999999999998753
No 296
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=94.56 E-value=0.28 Score=28.40 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=44.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 99876449829998066555323457754463221135645424689999999740897489996788999999999983
Q gi|254780434|r 229 AVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMA 308 (362)
Q Consensus 229 a~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~a 308 (362)
++.+.++|+|=|.+--|...|++ |.+ -..++.++++.+ + .. -+.-|.|-+|+..-..+
T Consensus 81 v~~l~~aGadiIA~DaT~R~RP~-----------g~~-------~~~~i~~i~~~~-~-~l--~MAD~st~eea~~A~~~ 138 (222)
T PRK01130 81 VDALAAAGADIIALDATLRPRPD-----------GET-------LAELVKRIKEKP-G-QL--LMADCSTLEEGLAAAKL 138 (222)
T ss_pred HHHHHHCCCCEEEEECCCCCCCC-----------CCC-------HHHHHHHHHHHH-C-CE--EEEECCCHHHHHHHHHC
T ss_conf 99999869999998467898989-----------968-------999999999982-9-87--89854889999999984
Q ss_pred CCCEEEE
Q ss_conf 9997545
Q gi|254780434|r 309 GANLIQL 315 (362)
Q Consensus 309 GAs~VQi 315 (362)
|+|.|.-
T Consensus 139 G~D~V~T 145 (222)
T PRK01130 139 GFDFIGT 145 (222)
T ss_pred CCCEEEC
T ss_conf 9999972
No 297
>pfam04309 G3P_antiterm Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.
Probab=94.55 E-value=0.079 Score=32.11 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=36.1
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 8999999974089748999678899999999998399975452
Q gi|254780434|r 274 TIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLY 316 (362)
Q Consensus 274 l~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~ 316 (362)
.+.+.++++.+ +.|||+.|=|.+.+|+.+.+.+||.+|--.
T Consensus 128 p~~i~~i~~~~--~~PiIAGGLI~~~edv~~aL~aGA~aVSTS 168 (174)
T pfam04309 128 PKVIQEITERT--NIPIIAGGLIRTEEEVREALKAGAVAVSTS 168 (174)
T ss_pred HHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCEEEECC
T ss_conf 99999999747--999997678388999999998499699878
No 298
>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=94.54 E-value=0.41 Score=27.28 Aligned_cols=219 Identities=15% Similarity=0.147 Sum_probs=95.2
Q ss_pred CCEE-ECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCC--CCCCHHHHHHHHHHHHH
Q ss_conf 9748-53468886779888740367524102001368789988626884255541000024--77777889998764100
Q gi|254780434|r 56 NPLG-MAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGF--NNAGYHTVFSRLSKIQP 132 (362)
Q Consensus 56 nPig-lAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl--~N~G~~~~~~~l~~~~~ 132 (362)
.||+ -+||..-. -+.....|..++++-.-.. ||.....++.--|-+ .|.=+-.+.+++-..-.
T Consensus 15 ~pIigagaGtGls---AK~ae~gGaDlIi~ynsGr-----------fRm~G~gSlagllpygdaN~iv~ema~Evlpvv~ 80 (268)
T pfam09370 15 EPIIGAGAGTGLS---AKCEEAGGADLILIYNSGR-----------YRMAGRGSLAGLLPYGNANEIVLEMAREVLPVVK 80 (268)
T ss_pred CCEEEEECCCCHH---HHHHHHCCCCEEEEECCCH-----------HHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9669973251165---7899857986998615403-----------4435883131201356576999999988875535
Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--CCCCCC--HHHHH--HHHHHHHHHHHHHHHHC
Q ss_conf 0121000110454246788776555420675526983033365322--110000--23432--11112244455655312
Q gi|254780434|r 133 TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPG--LRSLQK--KKNLE--RLLIHVMQTREEEKIKT 206 (362)
Q Consensus 133 ~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g--~~~~~~--~~~l~--~~l~~v~~~~~~~~~~~ 206 (362)
+.||+.-+.++.+.-+ +..|.+-+++.+ -. =..|+ |.+.. ++.-+. ..++. .-++.++.++.
T Consensus 81 ~tPViaGv~~tDP~~~-~~~~L~~l~~~G--fs-GV~Nf--PTvglidG~fR~~LEetGmgy~~EVEmIr~A~~------ 148 (268)
T pfam09370 81 HTPVLAGVCGTDPFRD-MDRFLDELKEMG--FA-GVQNF--PTVGLIDGEFRQNLEETGMGYDLEVEMIRLAHE------ 148 (268)
T ss_pred CCCEEEECCCCCCCCC-HHHHHHHHHHHC--CC-CEEEC--CCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHH------
T ss_conf 8875876158897452-999999999719--77-44438--822033518887788808867999999999997------
Q ss_pred CCCCEEEEECCCCC-CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC---CCHHHHHH---HHH
Q ss_conf 68851786505777-748889999987644982999806655532345775446322113564---54246899---999
Q gi|254780434|r 207 GKFVPIFLKISPDL-SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSP---LFLKSTIA---LAK 279 (362)
Q Consensus 207 ~~~~Pi~vKLsPd~-~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~---i~~~al~~---i~~ 279 (362)
..+ .-+ |+. +.+|..+ ..++|+|-|++- .....||..|.. -..-+.+. +..
T Consensus 149 -~dl---~T~-~yvf~~e~a~~----Ma~AGaDiIv~H-------------~GlT~gG~iG~~~a~sl~~a~~~~~~i~~ 206 (268)
T pfam09370 149 -KGL---LTT-PYVFNVEEARA----MAEAGADIIVAH-------------MGLTTGGTIGADTALSLDDCVELINAIAR 206 (268)
T ss_pred -CCC---CCC-CEECCHHHHHH----HHHCCCCEEEEC-------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf -798---333-13268999999----997499899976-------------77677767467776789999999999999
Q ss_pred HHHHCCCCEEEEEEC-CCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 997408974899967-8899999999998399975452787706
Q gi|254780434|r 280 IRQRVGPKIAIIGTG-GISSTKDALDKIMAGANLIQLYSAMIYE 322 (362)
Q Consensus 280 i~~~~~~~i~IIg~G-GI~s~~Da~e~l~aGAs~VQi~Tali~~ 322 (362)
....+++++-++.-| =|.+++|+...+..-......+.+--.+
T Consensus 207 aa~~v~~diIvLchGGpI~~P~Da~~vl~~t~~~~Gf~GaSS~E 250 (268)
T pfam09370 207 AARSVNPDVIVLCHGGPIATPEDAQYVLDRTPGCHGFYGASSME 250 (268)
T ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEECCCHHH
T ss_conf 99985998699951788899899999997397776676330366
No 299
>KOG0564 consensus
Probab=94.43 E-value=0.44 Score=27.11 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHCCCCCEEE-------------------EECCCCCCCCCCCCCC
Q ss_conf 678877655542067552698-------------------3033365322110000
Q gi|254780434|r 148 DFILDYVSGIRLFFTIASYFT-------------------INISSPNTPGLRSLQK 184 (362)
Q Consensus 148 ~~~~dy~~~~~~~~~~aD~iE-------------------iNiSCPNt~g~~~~~~ 184 (362)
+...|...+-++...+||++. ..++||=.||.-..+.
T Consensus 166 ~~~~Dl~yLk~KvdaGaDFIiTQlFYd~e~flkfv~~cR~~gi~~PIvPGIMPI~~ 221 (590)
T KOG0564 166 DYLADLPYLKEKVDAGADFIITQLFYDVETFLKFVKDCRAAGINVPIVPGIMPIQS 221 (590)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 41221689998521542143554640799999999999983788885555431020
No 300
>PRK08649 inositol-5-monophosphate dehydrogenase; Validated
Probab=94.42 E-value=0.22 Score=29.14 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
Q ss_conf 88899999876449829998066555323457754463221135645424689999999740897489996788999999
Q gi|254780434|r 223 EELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDA 302 (362)
Q Consensus 223 ~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da 302 (362)
.+..+.++++.++|+|-+++-.++.+- ..++-++.. +.+.+.+++ . +++| -.|-|-|++.|
T Consensus 140 ~~~~~~~~~Lv~aGvDvlvId~~vvd~----------aH~~~~~~~-----l~~~~~~~~-~--~v~v-IaGNVaT~e~a 200 (368)
T PRK08649 140 QNAQKLGPTVVEAGADLFVIQGTVVSA----------EHVSEGGEP-----LNLKEFIYE-L--DVPV-VVGGCVTYTTA 200 (368)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEEE----------HHHCCCCHH-----HHHHHHHCC-C--CCCE-EEECCCCHHHH
T ss_conf 638999999997499889984147540----------222032035-----656643123-7--9878-97344699999
Q ss_pred HHHHHCCCCEEEEC
Q ss_conf 99998399975452
Q gi|254780434|r 303 LDKIMAGANLIQLY 316 (362)
Q Consensus 303 ~e~l~aGAs~VQi~ 316 (362)
.+.+.+|||+|-++
T Consensus 201 ~~Li~aGADaVKVG 214 (368)
T PRK08649 201 LHLMRTGAAGVLVG 214 (368)
T ss_pred HHHHHCCCCEEEEC
T ss_conf 99997799899945
No 301
>TIGR00259 TIGR00259 conserved hypothetical protein TIGR00259; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A , which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA , Ycf3 , , and Ycf4 (IPR003359 from INTERPRO) . Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation . It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane , . Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain . Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids . The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners . Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates proteinprotein interactions. .
Probab=94.30 E-value=0.46 Score=26.94 Aligned_cols=224 Identities=17% Similarity=0.253 Sum_probs=124.0
Q ss_pred CEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 74853468886779888740367524102001368789988626884255541000024777778899987641000121
Q gi|254780434|r 57 PLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPI 136 (362)
Q Consensus 57 PiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi 136 (362)
-+|+.+=.||--+..++|.+.|+-+|.+-=.-..| .++-|+ +...+-+| ..+..+|++ .-..|+
T Consensus 22 ~lGl~~vid~A~~da~aL~~GG~DAv~~eN~fd~P---F~kq~v-----~~~tvAAM-------a~I~~~l~~-~v~~Pl 85 (261)
T TIGR00259 22 NLGLNAVIDKAVKDAKALEEGGVDAVILENFFDAP---FLKQEV-----DPETVAAM-------AVIAKELKE-DVSIPL 85 (261)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CCCCCC-----CHHHHHHH-------HHHHHHHHH-CCCCCC
T ss_conf 55648999999999999985698789985246869---776505-----63443188-------999998875-120464
Q ss_pred CCEEECCCCCHHHHH--HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE-
Q ss_conf 000110454246788--77655542067552698303336532211000023432111122444556553126885178-
Q gi|254780434|r 137 GINLGANKDSKDFIL--DYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIF- 213 (362)
Q Consensus 137 ~vsI~~~~~s~~~~~--dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~- 213 (362)
||||-.| |++. +.+.+ -.|||+=+|+=.=- ...|..-++--...+...+.. ..+ .++-+|
T Consensus 86 GiNvLrN----Da~aa~~iA~~-----v~A~FiRVn~L~G~-----~~sD~G~~eg~a~E~~ry~~~--~~s-G~v~~la 148 (261)
T TIGR00259 86 GINVLRN----DAVAALAIAKA-----VGAKFIRVNVLTGV-----AASDQGIIEGNAGELLRYKKL--LGS-GEVKILA 148 (261)
T ss_pred CEEEECC----CHHHHHHHHHH-----HCCCEEEEEEEEEE-----EECCCCCEECCHHHHHHHHHC--CCC-CCEEEEE
T ss_conf 1012123----47778988676-----47726898533212-----553674000416543343312--676-6456303
Q ss_pred ---EECCCCCCHHHHHHHHHH-HHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf ---650577774888999998-7644982999806655532345775446322113564542468999999974089748
Q gi|254780434|r 214 ---LKISPDLSEEELDDIAVE-VLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIA 289 (362)
Q Consensus 214 ---vKLsPd~~~~~i~~ia~~-a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~ 289 (362)
+|=+-.+...++...+.- ++..-+||++++--+ .| .+..++.++.+++.+. +.|
T Consensus 149 dv~vkhA~~lG~~~l~~~~~~Tver~laDAvi~SG~~------------------tG---~~~~~e~Lk~ak~~~~-~~p 206 (261)
T TIGR00259 149 DVVVKHAVHLGNRDLESIVLDTVERGLADAVILSGKT------------------TG---TEVDLEELKLAKETVK-DTP 206 (261)
T ss_pred CCCHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCC------------------CC---CCCCHHHHHHHHHHCC-CCE
T ss_conf 1524521025883668898644541698838981545------------------78---8878888999987517-966
Q ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCC-------HHHHHHHHHHHHHH
Q ss_conf 9996788999999999983999754527877069-------78999999999999
Q gi|254780434|r 290 IIGTGGISSTKDALDKIMAGANLIQLYSAMIYEG-------ISLPKRIIQGLSDF 337 (362)
Q Consensus 290 IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~G-------p~~~~~I~~~L~~~ 337 (362)
++..-|+.. |=.+.+..=||=|=++|.+=.+| +.=+++|.+.+.+-
T Consensus 207 Vl~gsG~~~--~N~~~ll~~AdG~ivat~~Kk~G~~nn~vD~~Rv~~~~~~~a~~ 259 (261)
T TIGR00259 207 VLAGSGVNL--ENVEELLSIADGVIVATTIKKDGKINNLVDQERVSKFVEKVAEG 259 (261)
T ss_pred EEEECCCCH--HHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 998478798--89999998739879835653388420042189999999999852
No 302
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=94.26 E-value=0.47 Score=26.87 Aligned_cols=103 Identities=16% Similarity=0.203 Sum_probs=62.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEC-C-C-CCCC-----CCCCCCCCC-------CCC-CC----CCCCCC
Q ss_conf 1786505777748889999987644982999806-6-5-5532-----345775446-------322-11----356454
Q gi|254780434|r 211 PIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSN-T-T-LSRK-----GVQCSDNHE-------QDG-GL----SGSPLF 270 (362)
Q Consensus 211 Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~N-T-~-~~~~-----~~~~~~~~~-------~~G-Gl----SG~~i~ 270 (362)
|.|.-|=+.-+.+...++++.++++|+.+++++= + + ..|. +...+.... ..+ +. ++..-.
T Consensus 119 ~~wfQLY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~rd~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (344)
T cd02922 119 PLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDP 198 (344)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 66999824776799999999999869988999567888775226665077778876654333344663166777750488
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 2468999999974089748999678899999999998399975452
Q gi|254780434|r 271 LKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLY 316 (362)
Q Consensus 271 ~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~ 316 (362)
..+-+-|+++|+.++ .|+| +=||.+++||.....+|||.|.|.
T Consensus 199 ~~tw~di~~lr~~~~--~pli-vKGIl~~~DA~~A~~~G~dgIiVS 241 (344)
T cd02922 199 TLTWDDIKWLRKHTK--LPIV-LKGVQTVEDAVLAAEYGVDGIVLS 241 (344)
T ss_pred CCCHHHHHHHHHHCC--CCEE-ECCCCCHHHHHHHHHCCCCEEEEE
T ss_conf 899999999998669--9701-002577999999996599889971
No 303
>KOG4201 consensus
Probab=94.22 E-value=0.24 Score=28.90 Aligned_cols=52 Identities=12% Similarity=0.197 Sum_probs=42.4
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC-CHH
Q ss_conf 8999999974089748999678899999999998399975452787706-978
Q gi|254780434|r 274 TIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYE-GIS 325 (362)
Q Consensus 274 l~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~-Gp~ 325 (362)
+..-+.+-+-.++++-++|--||+|++|+..+-.+|-++|-++-++|-+ +|.
T Consensus 224 lstTskL~E~i~kDvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sDp~ 276 (289)
T KOG4201 224 LSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSDPK 276 (289)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHCCCHH
T ss_conf 02578898508632698741578887889999874861898527777245888
No 304
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=93.71 E-value=0.54 Score=26.50 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=64.6
Q ss_pred CCCCCEEE--EECC-CC----CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 26885178--6505-77----77488899999876449829998066555323457754463221135645424689999
Q gi|254780434|r 206 TGKFVPIF--LKIS-PD----LSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALA 278 (362)
Q Consensus 206 ~~~~~Pi~--vKLs-Pd----~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~ 278 (362)
...++||+ +|-. || +| +-+.+ ++.+.++|+|=|.+--|...|++ |.| -.+.+.
T Consensus 57 ~~v~lPIIGi~K~~~~~s~VyIT-Pt~~e-v~~l~~aGadiIA~DaT~R~RP~-----------g~~-------l~~~i~ 116 (219)
T cd04729 57 ARVDLPIIGLIKRDYPDSEVYIT-PTIEE-VDALAAAGADIIALDATDRPRPD-----------GET-------LAELIK 116 (219)
T ss_pred HCCCCCEEEEEECCCCCCCEEEC-CCHHH-HHHHHHCCCCEEEEECCCCCCCC-----------CCC-------HHHHHH
T ss_conf 32899889999568899984566-88999-99999859999999467887989-----------978-------999999
Q ss_pred HHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEE----CHHH--HCCCH--HHHHHHHHHHHHHHH-HCCCCCHHHH
Q ss_conf 9997408974899967889999999999839997545----2787--70697--899999999999999-8389977896
Q gi|254780434|r 279 KIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQL----YSAM--IYEGI--SLPKRIIQGLSDFLN-KENEVNFENI 349 (362)
Q Consensus 279 ~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi----~Tal--i~~Gp--~~~~~I~~~L~~~l~-~~G~~si~e~ 349 (362)
++++.+ +.. -+.-|+|.+|+..-..+|+|.|.- ||.. .-.+| .+++++.+.+.-..- +=+|.+-+++
T Consensus 117 ~i~~~~--~~l--~MAD~st~ee~~~A~~~G~D~vgTTL~GYT~~t~~~~~PD~~lv~~l~~~~~~pvIaEGri~tPe~a 192 (219)
T cd04729 117 RIHEEY--NCL--LMADISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQA 192 (219)
T ss_pred HHHHHH--CCE--EEEECCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHH
T ss_conf 999986--977--8875488999999998499899702145677878899987899999999759939970698999999
No 305
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006268 These sequences are one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterised member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.; GO: 0016832 aldehyde-lyase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=93.69 E-value=0.6 Score=26.17 Aligned_cols=229 Identities=18% Similarity=0.224 Sum_probs=126.0
Q ss_pred CCEEEECCEECCCC-EEECCCCC--CCHHHHHHHHHC--CCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCC
Q ss_conf 31168887335997-48534688--867798887403--67524102001368789988626884255541000024777
Q gi|254780434|r 44 RLNTKVAGISLSNP-LGMAAGYD--KNAEVPIELLKL--GFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNA 118 (362)
Q Consensus 44 ~L~~~~~Gl~~~nP-iglAaG~d--k~~~~~~~l~~~--G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~ 118 (362)
+--+++.|+++=+= +.+.|||. -|.|++...... ..|+-..=.=-.+||+ +| +.|+--
T Consensus 11 ~tv~~v~~v~IG~G~~~~iAGPCsvEs~eq~~~~A~~vk~~Ga~~LRGGAfKPRT-SP----------------YsFQGl 73 (262)
T TIGR01361 11 KTVVDVKGVKIGEGSPIVIAGPCSVESEEQIVETARFVKEAGAKILRGGAFKPRT-SP----------------YSFQGL 73 (262)
T ss_pred CCEEECCCEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCC-CC----------------CCCCCC
T ss_conf 6157718577538478998648774887999999999986674043066348888-88----------------412474
Q ss_pred CHHHHHHHHHHHH--HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 7788999876410--00121000110454246788776555420675526983033365322110000234321111224
Q gi|254780434|r 119 GYHTVFSRLSKIQ--PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVM 196 (362)
Q Consensus 119 G~~~~~~~l~~~~--~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~ 196 (362)
|.+- ++-+++.+ .+.+++--|+-. .| ++.+.+|+|.|=| |=|.+|+=.-|++ +
T Consensus 74 g~~g-l~~l~~A~~~~GL~~vTEvmd~-------~d----~e~~~~y~D~lQi--------GARNmQNF~LL~~----v- 128 (262)
T TIGR01361 74 GEEG-LKLLRRAADETGLPVVTEVMDP-------RD----VEIVAEYADILQI--------GARNMQNFELLKE----V- 128 (262)
T ss_pred HHHH-HHHHHHHHHHCCCEEEEEEECH-------HH----HHHHHHHHHHHHH--------CCCCCCCHHHHHH----H-
T ss_conf 1899-9999999986099489886362-------56----7778765113422--------2541225699999----7-
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 4455655312688517865057777488899999876449-829998066555323457754463221135645424689
Q gi|254780434|r 197 QTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHK-VEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTI 275 (362)
Q Consensus 197 ~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g-~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~ 275 (362)
...++||++|=++--|-+|...-|+-....| -..|++|-. ++.+-...+-+ -.-+.
T Consensus 129 ---------G~~~KPVLLKRG~~aTi~EwL~AAEYIl~~GsN~~ViLCER-----GIRTfE~~TR~---------TLD~s 185 (262)
T TIGR01361 129 ---------GKQGKPVLLKRGMGATIEEWLEAAEYILSEGSNGNVILCER-----GIRTFEKSTRN---------TLDLS 185 (262)
T ss_pred ---------HHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEC-----CCCCCCCHHHH---------HHHHH
T ss_conf ---------22379755307721589999999999984688995489975-----85676300245---------33378
Q ss_pred HHHHHHHHCCCCEEEEE----ECCCCCHHH--HHHHHHCCCCEEEE------CHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 99999974089748999----678899999--99999839997545------27877069789999999999999983
Q gi|254780434|r 276 ALAKIRQRVGPKIAIIG----TGGISSTKD--ALDKIMAGANLIQL------YSAMIYEGISLPKRIIQGLSDFLNKE 341 (362)
Q Consensus 276 ~i~~i~~~~~~~i~IIg----~GGI~s~~D--a~e~l~aGAs~VQi------~Tali~~Gp~~~~~I~~~L~~~l~~~ 341 (362)
.|..+++.+ ++|||- ..|-.+-=- |..-+.+|||.+.| -.|| -.|++-+.-. +++..+|++.
T Consensus 186 aV~~~K~~t--HLPi~VDPSH~~GrRdLV~plA~AA~A~GADgl~iEVHp~Pe~AL-SD~~Qql~~c-~~f~~~~~~~ 259 (262)
T TIGR01361 186 AVPLLKKET--HLPIIVDPSHAAGRRDLVLPLAKAAIAAGADGLMIEVHPDPEKAL-SDSKQQLTPC-EEFKRLVKEL 259 (262)
T ss_pred HHHHHHHCC--CCCEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHC-CCCCCCCCHH-HHHHHHHHHH
T ss_conf 999998605--898787187987624578899999897574736898667833320-7871144667-8899999985
No 306
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=93.49 E-value=0.65 Score=25.95 Aligned_cols=146 Identities=19% Similarity=0.213 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89998764100012100011045424678877655542067552698303336532211000023432111122444556
Q gi|254780434|r 122 TVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREE 201 (362)
Q Consensus 122 ~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~ 201 (362)
.+.+.|++. +.+++.-. +..+.+...+.+++.+.+. .+|+++++-++. .+.+...+++..
T Consensus 40 ~~i~~l~~~--~~~iflDl-K~~DI~nTv~~~~~~~~~~--~~d~~Tvh~~~G----------~~~l~~~~~~~~----- 99 (216)
T cd04725 40 EIVKELREL--GFLVFLDL-KLGDIPNTVAAAAEALLGL--GADAVTVHPYGG----------SDMLKAALEAAE----- 99 (216)
T ss_pred HHHHHHHHC--CCEEEEEH-HHCCHHHHHHHHHHHHHHC--CCCEEEEECCCC----------HHHHHHHHHHHH-----
T ss_conf 999999867--97786303-5378058999999999845--988999846787----------999999999864-----
Q ss_pred HHHHCCCCCEEEEECCC-CC----------CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55312688517865057-77----------74888999998764498299980665553234577544632211356454
Q gi|254780434|r 202 EKIKTGKFVPIFLKISP-DL----------SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLF 270 (362)
Q Consensus 202 ~~~~~~~~~Pi~vKLsP-d~----------~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~ 270 (362)
+..+.+=..+.||. +. ..+....+++.+.+.|++|+++..+-
T Consensus 100 ---~~~~~vl~V~~lts~~~~~l~~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~------------------------ 152 (216)
T cd04725 100 ---EKGKGLFAVTVLSSPGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGATE------------------------ 152 (216)
T ss_pred ---CCCCEEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEECCCH------------------------
T ss_conf ---35980699997168887899988537789999999999986189779988624------------------------
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCC---------HHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 2468999999974089748999678899---------99999999839997545278770
Q gi|254780434|r 271 LKSTIALAKIRQRVGPKIAIIGTGGISS---------TKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 271 ~~al~~i~~i~~~~~~~i~IIg~GGI~s---------~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
...+++...+++.++ +-||.- +.+..+.+.+|||.+=|+.+...
T Consensus 153 ------~~~i~~~~~~~~~il-tPGI~~~~~~~dq~r~~tp~~a~~~gad~ivVGR~I~~ 205 (216)
T cd04725 153 ------PEALRRALGPDFLIL-TPGIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQ 205 (216)
T ss_pred ------HHHHHHHCCCCCEEE-CCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCC
T ss_conf ------899998508861797-35605777766882668999999879999998910148
No 307
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=93.40 E-value=0.67 Score=25.86 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 2468999999974089748999678899999999998399975452
Q gi|254780434|r 271 LKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLY 316 (362)
Q Consensus 271 ~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~ 316 (362)
...+..++++.+..++.+ |++.|||. .+.+.+++..|.+.+...
T Consensus 155 ~~G~~~L~~L~~~a~~~i-Im~GgGV~-~~Ni~~~~~tG~~eiH~S 198 (248)
T PRK11572 155 EQGLSLIMELIAQGDAPI-IMAGAGVR-AENLQKFLDAGVREVHSS 198 (248)
T ss_pred HHHHHHHHHHHHHCCCCE-EEECCCCC-HHHHHHHHHCCCCEEEEC
T ss_conf 788999999998449968-98789989-999999997597789735
No 308
>KOG4175 consensus
Probab=93.35 E-value=0.68 Score=25.81 Aligned_cols=209 Identities=19% Similarity=0.285 Sum_probs=111.2
Q ss_pred ECCC-CC--CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHC---
Q ss_conf 5346-88--86779888740367524102001368789988626884255541000024777778899987641000---
Q gi|254780434|r 60 MAAG-YD--KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPT--- 133 (362)
Q Consensus 60 lAaG-~d--k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~--- 133 (362)
+-|| +| ..+..++-+.+.|.+-+|.|-=-..|-. -.|.+. .....++.|-. -...+++.++..++.
T Consensus 24 iTaG~P~v~~T~kilkglq~gG~dIIELGvPfSDp~A--DGPtIq-~~n~~aL~ng~-----tl~~i~emvk~ar~~gvt 95 (268)
T KOG4175 24 ITAGDPDVSTTAKILKGLQSGGSDIIELGVPFSDPLA--DGPTIQ-AANRRALLNGT-----TLNSIIEMVKEARPQGVT 95 (268)
T ss_pred EECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCC--CCCHHH-HHHHHHHHCCC-----CHHHHHHHHHHHCCCCCC
T ss_conf 7248996788999998875279674886685676456--773455-66789987289-----689999999985046863
Q ss_pred CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCC-EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 12100011045424678877655542067552-69830333653221100002343211112244455655312688517
Q gi|254780434|r 134 SPIGINLGANKDSKDFILDYVSGIRLFFTIAS-YFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPI 212 (362)
Q Consensus 134 ~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD-~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi 212 (362)
.|++.-=-+|.--.-..+.|.+.++.++ |. ++.+.+ | +|. ....|...+... +-+
T Consensus 96 ~PIiLmgYYNPIl~yG~e~~iq~ak~aG--anGfiivDl--P----------pEE-------a~~~Rne~~k~g---isl 151 (268)
T KOG4175 96 CPIILMGYYNPILRYGVENYIQVAKNAG--ANGFIIVDL--P----------PEE-------AETLRNEARKHG---ISL 151 (268)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHCC--CCCEEECCC--C----------HHH-------HHHHHHHHHHCC---CEE
T ss_conf 0266220144887640789999999658--774585068--8----------689-------899999998649---248
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 86505777748889999987644982999806655532345775446322113564542468999999974089748999
Q gi|254780434|r 213 FLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIG 292 (362)
Q Consensus 213 ~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg 292 (362)
..-.+|-.+++.++.+++++ |+++-. .+|.+... .+ ..+-..-..++.++|+..+ +-|+ +
T Consensus 152 vpLvaPsTtdeRmell~~~a-----dsFiYv---VSrmG~TG---------~~-~svn~~l~~L~qrvrk~t~-dtPl-A 211 (268)
T KOG4175 152 VPLVAPSTTDERMELLVEAA-----DSFIYV---VSRMGVTG---------TR-ESVNEKLQSLLQRVRKATG-DTPL-A 211 (268)
T ss_pred EEEECCCCHHHHHHHHHHHH-----CCEEEE---EEECCCCC---------CH-HHHHHHHHHHHHHHHHHCC-CCCE-E
T ss_conf 97417998089999999863-----255999---87145666---------17-7788889999999998648-9862-6
Q ss_pred EC-CCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 67-889999999999839997545278770
Q gi|254780434|r 293 TG-GISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 293 ~G-GI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
+| ||++.++....=.. ||-|-++|.++-
T Consensus 212 VGFGvst~EHf~qVgsv-aDGVvvGSkiv~ 240 (268)
T KOG4175 212 VGFGVSTPEHFKQVGSV-ADGVVVGSKIVK 240 (268)
T ss_pred EEECCCCHHHHHHHHHH-CCCEEECHHHHH
T ss_conf 75066878998765203-254476078999
No 309
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=93.23 E-value=0.45 Score=27.04 Aligned_cols=24 Identities=13% Similarity=0.329 Sum_probs=11.9
Q ss_pred HHHHHHCC-CCEEECCCCCCCCCCC
Q ss_conf 88874036-7524102001368789
Q gi|254780434|r 71 PIELLKLG-FGFVEIGTVTPHPQAG 94 (362)
Q Consensus 71 ~~~l~~~G-~G~v~~ktit~~p~~G 94 (362)
+|.+..+| +|.-++-.+|-+--.|
T Consensus 252 lKt~sA~G~Yg~s~iTAlTAQNT~G 276 (738)
T PRK09517 252 LKSIAAAGGYGMSVVTALVAQNTHG 276 (738)
T ss_pred HHHHHHCCCHHHHHHHEEEEECCCC
T ss_conf 9999962711312450256213656
No 310
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=93.17 E-value=0.32 Score=28.07 Aligned_cols=204 Identities=19% Similarity=0.167 Sum_probs=99.1
Q ss_pred CCEEEECCEECC-CCEEECCCCC-C-CHHHH----HHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCC
Q ss_conf 311688873359-9748534688-8-67798----887403675241020013687899886268842555410000247
Q gi|254780434|r 44 RLNTKVAGISLS-NPLGMAAGYD-K-NAEVP----IELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFN 116 (362)
Q Consensus 44 ~L~~~~~Gl~~~-nPiglAaG~d-k-~~~~~----~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~ 116 (362)
+--+++.|+++- +++.+=||+. - +-+.+ +.+.+.|.-..--+. .+||. -.+ +|.
T Consensus 13 ~~~i~i~~i~iG~~~~~~IAGPC~iEs~e~~~~~A~~lk~~g~~~~r~~~--fK~RT---------------s~~--sfr 73 (266)
T PRK13398 13 KTIVKIGDVVIGGEEKIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGA--FKPRT---------------SPY--SFQ 73 (266)
T ss_pred CCEEEECCEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCE--ECCCC---------------CCC--CCC
T ss_conf 88799799998899548997577207999999999999983334333754--15899---------------985--556
Q ss_pred CCCHHHHHHHHHHHH--HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 777788999876410--001210001104542467887765554206755269830-33365322110000234321111
Q gi|254780434|r 117 NAGYHTVFSRLSKIQ--PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTIN-ISSPNTPGLRSLQKKKNLERLLI 193 (362)
Q Consensus 117 N~G~~~~~~~l~~~~--~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiN-iSCPNt~g~~~~~~~~~l~~~l~ 193 (362)
-+|.+ -++-|++.+ .+.|+.--|.-. +. ++.+.+++|.+-|- ..|-|| +++.
T Consensus 74 G~G~e-gL~~L~~vk~~~glpi~TdVh~~----~q-------~~~v~~~vDvlQIpAfl~rqt-------------dLl~ 128 (266)
T PRK13398 74 GLGEE-GLKILKEVGDKYNMPVVTEVMDT----RD-------VEEVADYIDMLQIGSRNMQNF-------------ELLK 128 (266)
T ss_pred CCCHH-HHHHHHHHHHHCCCCEEEEECCH----HH-------HHHHHHHHHHEEECCHHCCCH-------------HHHH
T ss_conf 88588-99999999987299547774583----76-------999997510112250422798-------------9999
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 22444556553126885178650577774888999998764498299980665553234577544632211356454246
Q gi|254780434|r 194 HVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKS 273 (362)
Q Consensus 194 ~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~a 273 (362)
++ ..+.+||.+|=+-..+.++....++.+...|.+-+.+|-. +... +-|++ +- ..-
T Consensus 129 a~----------a~t~kpV~iKkg~~~s~~~~~~a~eki~~~Gn~~v~l~ER-----G~~t------~~gy~-~~--v~D 184 (266)
T PRK13398 129 EV----------GKTKKPILLKRGMSATIEEWLYAAEYIMSEGNENVVLCER-----GIRT------FETYT-RN--TLD 184 (266)
T ss_pred HH----------HHHCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEC-----CCCC------CCCCC-CC--CHH
T ss_conf 99----------9709966734876688899999999998479983899842-----5245------77744-35--213
Q ss_pred HHHHHHHHHHCCCCEEEEE----ECCCCCHHH--HHHHHHCCCCEEEECH
Q ss_conf 8999999974089748999----678899999--9999983999754527
Q gi|254780434|r 274 TIALAKIRQRVGPKIAIIG----TGGISSTKD--ALDKIMAGANLIQLYS 317 (362)
Q Consensus 274 l~~i~~i~~~~~~~i~IIg----~GGI~s~~D--a~e~l~aGAs~VQi~T 317 (362)
.+.+..+++.. ++|||- +.|-.+.-- +..-+.+|||-+.+=|
T Consensus 185 ~~~i~~mk~~~--~lPVi~D~SHs~G~r~~v~~la~aAva~G~dGlfiE~ 232 (266)
T PRK13398 185 LAAVAVIKELS--HLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEV 232 (266)
T ss_pred HHHHHHHHHCC--CCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 67799998577--9998988853356799999999999983998899982
No 311
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=92.83 E-value=0.81 Score=25.30 Aligned_cols=155 Identities=17% Similarity=0.242 Sum_probs=78.0
Q ss_pred HCCCCCEEEEE-CCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHCCCCCEEEEE-----------CCC--CCCHHH
Q ss_conf 06755269830-3336532211000023432111-12244455655312688517865-----------057--777488
Q gi|254780434|r 160 FFTIASYFTIN-ISSPNTPGLRSLQKKKNLERLL-IHVMQTREEEKIKTGKFVPIFLK-----------ISP--DLSEEE 224 (362)
Q Consensus 160 ~~~~aD~iEiN-iSCPNt~g~~~~~~~~~l~~~l-~~v~~~~~~~~~~~~~~~Pi~vK-----------LsP--d~~~~~ 224 (362)
+..+||.+|-| ++| |+..+.+.+-.+...++- .+++-+|..... ...++|.||- ++| +.+.++
T Consensus 63 ~eAGADiIeTNTFga-t~i~lady~led~v~~in~~aa~iAR~aA~~-~~~~k~rfVaGsiGPt~k~~~~~~~~~v~fd~ 140 (311)
T COG0646 63 IEAGADIIETNTFGA-TTIKLADYGLEDKVYEINQKAARIARRAADE-AGDPKPRFVAGSIGPTNKTLSISPDFAVTFDE 140 (311)
T ss_pred HHCCCCEEEECCCCC-CHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CCCCCCEEEEEECCCCCCCCCCCCCCCCCHHH
T ss_conf 964676787347786-5365755073889999999999999999864-47887538987326867767768766635999
Q ss_pred H----HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC--
Q ss_conf 8----9999987644982999806655532345775446322113564542468999999974089748999678899--
Q gi|254780434|r 225 L----DDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISS-- 298 (362)
Q Consensus 225 i----~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s-- 298 (362)
+ .+-++.+.+.|+|++.+ -|.-|.. . ...++..++++.+..+.++|+|.+|-|.+
T Consensus 141 l~~ay~eq~~~Li~gG~D~iLi-ET~~D~l-----~-------------~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG 201 (311)
T COG0646 141 LVEAYREQVEGLIDGGADLILI-ETIFDTL-----N-------------AKAAVFAAREVFEELGVRLPVMISGTITDSG 201 (311)
T ss_pred HHHHHHHHHHHHHHCCCCEEEE-EHHCCHH-----H-------------HHHHHHHHHHHHHHCCCCCCEEEEEEEECCC
T ss_conf 9999999999998378758997-5221689-----8-------------9999999999987327765479999980376
Q ss_pred -------HHHHHHHHH-CCCCEEEECHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf -------999999998-3999754527877069789999999999999
Q gi|254780434|r 299 -------TKDALDKIM-AGANLIQLYSAMIYEGISLPKRIIQGLSDFL 338 (362)
Q Consensus 299 -------~~Da~e~l~-aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l 338 (362)
.++++.-+. +|+++|.+--++ ||...+...++|++.-
T Consensus 202 ~tl~Gq~~~a~~~~l~~~~~~~vGlNCa~---Gp~~m~~~l~~ls~~~ 246 (311)
T COG0646 202 RTLSGQTIEAFLNSLEHLGPDAVGLNCAL---GPDEMRPHLRELSRIA 246 (311)
T ss_pred EECCCCCHHHHHHHHHCCCCCEEEECCCC---CHHHHHHHHHHHHHCC
T ss_conf 12379868999998663597478534566---8899999999987416
No 312
>TIGR01464 hemE uroporphyrinogen decarboxylase; InterPro: IPR006361 This entry represents uroporphyrinogen decarboxylase (HemE), which catalyzes the fifth step in the heme biosynthetic pathway, converting uroporphyrinogen III to coproporphyrinogen III by decarboxylating the four acetate side chains of the substrate . This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products. This activity is essential in all organisms, and subnormal activity of URO-D leads to the most common form of porphyria in humans, porphyria cutanea tarda (PCT).; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin biosynthetic process.
Probab=92.80 E-value=0.82 Score=25.27 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHCCCCCEEEE
Q ss_conf 788776555420675526983
Q gi|254780434|r 149 FILDYVSGIRLFFTIASYFTI 169 (362)
Q Consensus 149 ~~~dy~~~~~~~~~~aD~iEi 169 (362)
.+.||+. .++..+||++=|
T Consensus 182 ~~~~YL~--~Qv~AGA~avQi 200 (351)
T TIGR01464 182 ATIEYLS--EQVKAGAQAVQI 200 (351)
T ss_pred HHHHHHH--HHHHCCCCEEEE
T ss_conf 9999999--988618848999
No 313
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=92.63 E-value=0.59 Score=26.23 Aligned_cols=175 Identities=10% Similarity=0.138 Sum_probs=84.7
Q ss_pred HHHHHHHHHHCCCCCCEEECCCCCHH------HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99987641000121000110454246------788776555420675526983033365322110000234321111224
Q gi|254780434|r 123 VFSRLSKIQPTSPIGINLGANKDSKD------FILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVM 196 (362)
Q Consensus 123 ~~~~l~~~~~~~pi~vsI~~~~~s~~------~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~ 196 (362)
+.+.|+.......+|+-+=+.++|+. ...+|+..+++.+ |+++-+ +.++..+.--++.+.
T Consensus 35 f~~AL~~~~~~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~~G--Aa~iSV------------LTd~~~F~Gs~e~L~ 100 (254)
T COG0134 35 FYAALKEASGKPAVIAEVKKASPSKGLIREDFDPVEIAKAYEEGG--AAAISV------------LTDPKYFQGSFEDLR 100 (254)
T ss_pred HHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHC--CEEEEE------------ECCCCCCCCCHHHHH
T ss_conf 999997437886089986157998775555599999999999739--848999------------637664698789999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 44556553126885178650577774888999998764498299980665553234577544632211356454246899
Q gi|254780434|r 197 QTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIA 276 (362)
Q Consensus 197 ~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~ 276 (362)
. .+....+||+.|=- -++..|+ ..+..+|+|+|-++=.. +-+.-+.-
T Consensus 101 ~------v~~~v~~PvL~KDF-iiD~yQI----~~Ar~~GADavLLI~~~----------------------L~~~~l~e 147 (254)
T COG0134 101 A------VRAAVDLPVLRKDF-IIDPYQI----YEARAAGADAVLLIVAA----------------------LDDEQLEE 147 (254)
T ss_pred H------HHHHCCCCEEECCC-CCCHHHH----HHHHHCCCCCHHHHHHH----------------------CCHHHHHH
T ss_conf 9------99855898264467-7889999----99998085619999996----------------------39999999
Q ss_pred HHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHH-------CCCCCHHHH
Q ss_conf 9999974089748999678899999999998399975452787706978999999999999998-------389977896
Q gi|254780434|r 277 LAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNK-------ENEVNFENI 349 (362)
Q Consensus 277 i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~-------~G~~si~e~ 349 (362)
+......++-+. ++ =|++.++....+.+||+.+.|-.-- ++...+=-.....|...+.. -|+++.+|+
T Consensus 148 l~~~A~~LGm~~-LV---EVh~~eEl~rAl~~ga~iIGINnRd-L~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv 222 (254)
T COG0134 148 LVDRAHELGMEV-LV---EVHNEEELERALKLGAKIIGINNRD-LTTLEVDLETTEKLAPLIPKDVILISESGISTPEDV 222 (254)
T ss_pred HHHHHHHCCCCE-EE---EECCHHHHHHHHHCCCCEEEEECCC-CCHHEECHHHHHHHHHHCCCCCEEEECCCCCCHHHH
T ss_conf 999999769923-89---9789999999996799889983788-402100688999988448777589961798999999
No 314
>TIGR00343 TIGR00343 pyridoxine biosynthesis protein; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in S. cerevisiae . Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in C. nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance. ..
Probab=92.21 E-value=0.89 Score=25.04 Aligned_cols=76 Identities=13% Similarity=0.221 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHCCCCEEE--EEECCCCCHHHHHHHHHCCCCEEEECHHHHCC------------------CHHHHHHHHH
Q ss_conf 689999999740897489--99678899999999998399975452787706------------------9789999999
Q gi|254780434|r 273 STIALAKIRQRVGPKIAI--IGTGGISSTKDALDKIMAGANLIQLYSAMIYE------------------GISLPKRIIQ 332 (362)
Q Consensus 273 al~~i~~i~~~~~~~i~I--Ig~GGI~s~~Da~e~l~aGAs~VQi~Tali~~------------------Gp~~~~~I~~ 332 (362)
...++.++.+. +++|+ .+.|||.++.|+.-++-.||+-|-++|+..-. .|.++.++-+
T Consensus 191 ~~~~~~~~~~~--G~lPvvnfaaGGvatPadaal~mqlG~~GvfvGsGifks~~P~~~a~aiv~a~~~y~~~~~~~~~s~ 268 (298)
T TIGR00343 191 PVELLKEVKKE--GKLPVVNFAAGGVATPADAALLMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTHYDNPEVLAEVSK 268 (298)
T ss_pred HHHHHHHHHHC--CCCCEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999863--8974464135764655789999984778247534200056778999999999972001789999999
Q ss_pred HHHHHHHHCCCCCHHHHH
Q ss_conf 999999983899778961
Q gi|254780434|r 333 GLSDFLNKENEVNFENIR 350 (362)
Q Consensus 333 ~L~~~l~~~G~~si~e~i 350 (362)
+|.+.|.--...++.+..
T Consensus 269 ~lG~~m~G~~~~~~~~~~ 286 (298)
T TIGR00343 269 DLGEAMKGIEISEISEEE 286 (298)
T ss_pred HHHHHHHCCCHHHHHHHH
T ss_conf 888886043177776766
No 315
>PRK04302 triosephosphate isomerase; Provisional
Probab=92.11 E-value=0.99 Score=24.71 Aligned_cols=109 Identities=16% Similarity=0.210 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCC---CC------CCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 8899999876449829998066555323---45------77544632211356-45424689999999740897489996
Q gi|254780434|r 224 ELDDIAVEVLSHKVEGIIVSNTTLSRKG---VQ------CSDNHEQDGGLSGS-PLFLKSTIALAKIRQRVGPKIAIIGT 293 (362)
Q Consensus 224 ~i~~ia~~a~~~g~dGiv~~NT~~~~~~---~~------~~~~~~~~GGlSG~-~i~~~al~~i~~i~~~~~~~i~IIg~ 293 (362)
++.+.++.+.++|..-|+|++++..... +. .|....++ |.+=. .-.....+.++.+++ ..++++|+-.
T Consensus 102 E~~~~v~~a~~~gl~~I~Cv~~~~~~~~~~~l~~~~IAYEPvWAIGT-G~~as~~~~e~i~~~~~~~~~-~~~~i~ILYG 179 (223)
T PRK04302 102 DIEAAVERAKELGLESVVCTNNPETSAAAAALGPDAVAVEPPELIGT-GIPVSKAKPEVVTGTVEAVRK-VNPDVKVLCG 179 (223)
T ss_pred CHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCHHHHCC-CCCCCCCCHHHHHHHHHHHHH-HCCCCCEEEE
T ss_conf 27999999998699489972739988899865899899888898448-987662589999999999996-4799758997
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECHHHHC-CCHHHHHHHHHHHHHH
Q ss_conf 7889999999999839997545278770-6978999999999999
Q gi|254780434|r 294 GGISSTKDALDKIMAGANLIQLYSAMIY-EGISLPKRIIQGLSDF 337 (362)
Q Consensus 294 GGI~s~~Da~e~l~aGAs~VQi~Tali~-~Gp~~~~~I~~~L~~~ 337 (362)
|||.+++|+..++..|+|-+-|++|.+- +.|. .+.++|.+-
T Consensus 180 GsV~~~n~~~~~~~~~vDG~LVGgAsLkA~Dp~---~~l~~l~~~ 221 (223)
T PRK04302 180 AGISTGEDVKAALELGADGVLLASGVVKAKDPE---AALRDLVSP 221 (223)
T ss_pred CCCCHHHHHHHHHCCCCCEEEEEEEEEECCCHH---HHHHHHHHH
T ss_conf 846878899997468998589762566687999---999999975
No 316
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=91.95 E-value=1 Score=24.59 Aligned_cols=153 Identities=16% Similarity=0.112 Sum_probs=80.1
Q ss_pred CCCCCCHHHHHHHHHHHH--HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCCCCCHHHHHH
Q ss_conf 247777788999876410--001210001104542467887765554206755269830-33365322110000234321
Q gi|254780434|r 114 GFNNAGYHTVFSRLSKIQ--PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTIN-ISSPNTPGLRSLQKKKNLER 190 (362)
Q Consensus 114 Gl~N~G~~~~~~~l~~~~--~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiN-iSCPNt~g~~~~~~~~~l~~ 190 (362)
+|.-+|.+ -++-|++.+ .+.|+..-|.- ..-++.+.+++|.+-|- ..|-|| +
T Consensus 59 sfrG~G~e-gL~~L~~vk~~~glpi~TdVh~-----------~~q~e~v~~~vDilQIpAfl~rqt-------------d 113 (250)
T PRK13397 59 SFQGLGLQ-GIRYLHEVCQEFGLLSVSEIMS-----------ERQLEEAYDYLDVIQVGARNMQNF-------------E 113 (250)
T ss_pred CCCCCCHH-HHHHHHHHHHHCCCCEEEECCC-----------HHHHHHHHHHCCEEEECHHHHCCH-------------H
T ss_conf 76788888-9999999999839974884799-----------999999984474898772640498-------------9
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11122444556553126885178650577774888999998764498299980665553234577544632211356454
Q gi|254780434|r 191 LLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLF 270 (362)
Q Consensus 191 ~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~ 270 (362)
++.++ ..+.+||.+|=+-..+-.+....++.+.+.|.+.|.+|-. +. .++. .+-+-+.
T Consensus 114 Ll~a~----------a~t~kpV~iKkgq~~s~~~~~~a~eki~~~Gn~~i~l~ER-----G~------~gy~-~~~rn~~ 171 (250)
T PRK13397 114 FLKTL----------SHIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCER-----GV------RGYD-VETRNML 171 (250)
T ss_pred HHHHH----------HHHCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEC-----CC------CCCC-CCCCCCH
T ss_conf 99998----------7309808978877799999999999999659982899828-----98------7555-6312570
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEE----CCCCCHHH--HHHHHHCCCCEEEECH
Q ss_conf 24689999999740897489996----78899999--9999983999754527
Q gi|254780434|r 271 LKSTIALAKIRQRVGPKIAIIGT----GGISSTKD--ALDKIMAGANLIQLYS 317 (362)
Q Consensus 271 ~~al~~i~~i~~~~~~~i~IIg~----GGI~s~~D--a~e~l~aGAs~VQi~T 317 (362)
....+-.+++.. .+|||-- .|-...-- |..-+.+|||-+.+=|
T Consensus 172 --d~~~ip~~~~~~--~~PVi~D~SHs~G~r~~v~~la~aA~a~G~dGlfiE~ 220 (250)
T PRK13397 172 --DIMAVPIIQQKT--DLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEV 220 (250)
T ss_pred --HHHHHHHHHHHC--CCCEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf --077779999615--9998992875478825289999999983999899982
No 317
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=91.86 E-value=0.75 Score=25.54 Aligned_cols=98 Identities=17% Similarity=0.254 Sum_probs=56.2
Q ss_pred CCCHHHHH-------HHHHHHHHCCCCEEEEE--CCC--CCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 77748889-------99998764498299980--665--55323457754463221-13564542468999999974089
Q gi|254780434|r 219 DLSEEELD-------DIAVEVLSHKVEGIIVS--NTT--LSRKGVQCSDNHEQDGG-LSGSPLFLKSTIALAKIRQRVGP 286 (362)
Q Consensus 219 d~~~~~i~-------~ia~~a~~~g~dGiv~~--NT~--~~~~~~~~~~~~~~~GG-lSG~~i~~~al~~i~~i~~~~~~ 286 (362)
.++.++|. +.|+.|.++|.|||=+- +.- ..-..-.......++|| +-.+ ....++.+..+|+.+++
T Consensus 139 ~mt~~eI~~ii~~f~~AA~rA~~AGfDgVEIHaahGYLl~qFlSp~~N~RtDeYGGS~enR--~Rf~~Eii~aVr~~vg~ 216 (370)
T cd02929 139 EMDKDDIKRVRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENR--ARFWRETLEDTKDAVGD 216 (370)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHH--HHHHHHHHHHHHHHHCC
T ss_conf 6899999999999999999999859898997711355999734774578777468988999--89999999999997199
Q ss_pred CEEEE---------EECCCCCHHHHHHHHH---CCCCEEEECHH
Q ss_conf 74899---------9678899999999998---39997545278
Q gi|254780434|r 287 KIAII---------GTGGISSTKDALDKIM---AGANLIQLYSA 318 (362)
Q Consensus 287 ~i~II---------g~GGI~s~~Da~e~l~---aGAs~VQi~Ta 318 (362)
+++|. +-+|..+.+|..+++. ...|++.+..+
T Consensus 217 df~i~~R~s~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~vs~g 260 (370)
T cd02929 217 DCAVATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNVG 260 (370)
T ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 87599998941256889998889999999997365797998855
No 318
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=91.85 E-value=0.26 Score=28.67 Aligned_cols=66 Identities=21% Similarity=0.298 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH
Q ss_conf 48889999987644982999806655532345775446322113564542468999999974089748999678899999
Q gi|254780434|r 222 EEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKD 301 (362)
Q Consensus 222 ~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~D 301 (362)
...+....+.+++...|.+=+ |-| +.| +.+.++.+++ .+|||+.|=|.+-+|
T Consensus 107 S~Al~~~~~~i~~~~pD~iEv---------------------LPG--v~P---kvi~~i~~~t--~~piIAGGLi~t~Ee 158 (181)
T COG1954 107 SIALEKGIKQIEKSEPDFIEV---------------------LPG--VMP---KVIKEITEKT--HIPIIAGGLIETEEE 158 (181)
T ss_pred HHHHHHHHHHHHHCCCCEEEE---------------------CCC--CCH---HHHHHHHHHC--CCCEEECCCCCCHHH
T ss_conf 788998999998709987988---------------------675--439---9999998755--897773243053999
Q ss_pred HHHHHHCCCCEEEE
Q ss_conf 99999839997545
Q gi|254780434|r 302 ALDKIMAGANLIQL 315 (362)
Q Consensus 302 a~e~l~aGAs~VQi 315 (362)
+.+.+.+||-+|--
T Consensus 159 v~~Al~aGA~avST 172 (181)
T COG1954 159 VREALKAGAVAVST 172 (181)
T ss_pred HHHHHHHCCEEEEE
T ss_conf 99999717679851
No 319
>PRK08999 hypothetical protein; Provisional
Probab=91.74 E-value=1.1 Score=24.44 Aligned_cols=77 Identities=14% Similarity=0.114 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH
Q ss_conf 88999998764498299980665553234577544632211356454246899999997408974899967889999999
Q gi|254780434|r 224 ELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDAL 303 (362)
Q Consensus 224 ~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~ 303 (362)
...++. .|.+.|+|.++++.- ..+... +...++.....+++.+.. .+|+++.|||. .+|.-
T Consensus 235 ~~~e~~-~A~~~g~Dyi~lsPV------~~T~sh---------p~~~~lGw~~f~~l~~~~--~iPv~ALGGi~-~~dl~ 295 (312)
T PRK08999 235 NAEELA-HAQQLGVDFAVLSPV------QPTASH---------PGAPPLGWDGFAALIAGV--PLPVYALGGMG-PGDLE 295 (312)
T ss_pred CHHHHH-HHHHHCCCEEEECCC------CCCCCC---------CCCCCCCHHHHHHHHHHC--CCCEEEECCCC-HHHHH
T ss_conf 999999-998708996998154------464789---------999967899999999738--99989988889-99999
Q ss_pred HHHHCCCCEEEECHHH
Q ss_conf 9998399975452787
Q gi|254780434|r 304 DKIMAGANLIQLYSAM 319 (362)
Q Consensus 304 e~l~aGAs~VQi~Tal 319 (362)
+-+.+||.-|-.-+++
T Consensus 296 ~a~~~Ga~GiA~Ir~~ 311 (312)
T PRK08999 296 EAREHGAQGIAGIRGF 311 (312)
T ss_pred HHHHHCCEEEEEEEEC
T ss_conf 9998099699776315
No 320
>PRK08227 aldolase; Validated
Probab=91.64 E-value=1.1 Score=24.36 Aligned_cols=142 Identities=12% Similarity=0.149 Sum_probs=72.8
Q ss_pred HCCCCCEE--EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC---CCCHHH-HHHHHHHHH
Q ss_conf 06755269--830333653221100002343211112244455655312688517865057---777488-899999876
Q gi|254780434|r 160 FFTIASYF--TINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISP---DLSEEE-LDDIAVEVL 233 (362)
Q Consensus 160 ~~~~aD~i--EiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsP---d~~~~~-i~~ia~~a~ 233 (362)
+.-+||++ -+|+.+++ +.+.+..+ ..+... .....+|+++=..+ ...+.+ +.-.++.+.
T Consensus 131 vrlGAdAVsv~v~iGs~~--------E~~~l~~l-g~v~~e------~~~~GmPlla~~~~g~~~~~d~~~va~aaRia~ 195 (291)
T PRK08227 131 VRLNVCAVAAQVFIGSEY--------ETQSIKNI-IQLVDA------GLRYGMPTMAVTAVGKDMVRDARYFSLATRIAA 195 (291)
T ss_pred HHCCCCEEEEEEECCCCH--------HHHHHHHH-HHHHHH------HHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 867997899986359932--------89999999-999999------998299879983468777777899999999999
Q ss_pred HCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC-CHHHH----HHHHHC
Q ss_conf 4498299980665553234577544632211356454246899999997408974899967889-99999----999983
Q gi|254780434|r 234 SHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGIS-STKDA----LDKIMA 308 (362)
Q Consensus 234 ~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~-s~~Da----~e~l~a 308 (362)
|.|+|-|-.--| + +..+++-..+ .+|++-.||=. +-.|+ .+-|.+
T Consensus 196 ELGADiVKt~yt-------------------------~---e~f~~Vv~a~--pvPVliaGG~k~~d~e~L~~v~~a~~a 245 (291)
T PRK08227 196 EMGAQIIKTYYV-------------------------E---KGFERITAGC--PVPIVIAGGKKLPERDALEMCYQAIDQ 245 (291)
T ss_pred HHCCCEEECCCC-------------------------H---HHHHHHHHCC--CCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 978998850697-------------------------3---4599999648--997899679989869999999999976
Q ss_pred CCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 999754527877069789999999999999983899778961
Q gi|254780434|r 309 GANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIR 350 (362)
Q Consensus 309 GAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~i 350 (362)
||+=|-++.- +|+-+. ...+.+.|.... |.=.|++|+.
T Consensus 246 Ga~Gv~~GRN-VfQ~~~-P~~~~~Al~~iV--He~~s~~eA~ 283 (291)
T PRK08227 246 GASGVDMGRN-IFQSDA-PVAMIKAVHAVV--HHNETAKEAY 283 (291)
T ss_pred CCCEEEECCH-HHCCCC-HHHHHHHHHHHH--CCCCCHHHHH
T ss_conf 9936872400-235899-899999999986--5999999999
No 321
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein; InterPro: IPR005991 This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria..
Probab=91.30 E-value=0.4 Score=27.36 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHH--HCCCHHHHHHHHHHHH--HHHHHC
Q ss_conf 564542468999999974089748999678899999999998399975452787--7069789999999999--999983
Q gi|254780434|r 266 GSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAM--IYEGISLPKRIIQGLS--DFLNKE 341 (362)
Q Consensus 266 G~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tal--i~~Gp~~~~~I~~~L~--~~l~~~ 341 (362)
|+|-+...++|-.+.++ ++.+ |-+-|||.+++|+.-.+.|||+-|+++|=| .|+-|+ ++..+-. .|-+..
T Consensus 311 GrPqfsavleCa~~a~~-~G~h--~WadGG~r~PrdvalalaaGasnvm~GsWf~GtyesPG---dl~~~~~~~~ykes~ 384 (476)
T TIGR01303 311 GRPQFSAVLECAAEARK-LGKH--VWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPG---DLRRDADGRAYKESF 384 (476)
T ss_pred CCCHHHHHHHHHHHHHH-CCCE--EEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC---CHHHHCCCCHHHHHH
T ss_conf 87137899898899986-0772--64068867637777766506430244110035547851---011100474013453
Q ss_pred CCCCH
Q ss_conf 89977
Q gi|254780434|r 342 NEVNF 346 (362)
Q Consensus 342 G~~si 346 (362)
|..|-
T Consensus 385 Gmas~ 389 (476)
T TIGR01303 385 GMASK 389 (476)
T ss_pred HHHHH
T ss_conf 14568
No 322
>PRK08508 biotin synthase; Provisional
Probab=91.26 E-value=1.2 Score=24.11 Aligned_cols=193 Identities=13% Similarity=0.074 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHH---HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC--CCCCCCCCCCHHHHHHHH
Q ss_conf 77788999876410---0012100011045424678877655542067552698303336--532211000023432111
Q gi|254780434|r 118 AGYHTVFSRLSKIQ---PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSP--NTPGLRSLQKKKNLERLL 192 (362)
Q Consensus 118 ~G~~~~~~~l~~~~---~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCP--Nt~g~~~~~~~~~l~~~l 192 (362)
.-+|.+.+-++..+ ++.-+-+|+|-- ..++|.. ....++|.+-.|+--. ..+. ......+++-+
T Consensus 72 ~~~e~v~~~v~~Ik~~~~~l~~c~slG~l-----~~e~~~~---LkeAGvdrY~hNlETs~~~y~~---I~tThty~dRl 140 (279)
T PRK08508 72 KKLEYVAKAAKAVKKEVPGLHLIACNGMA-----SVEQLKE---LKKAGIFSYNHNLETSKEFFPK---ICTTHSWEERF 140 (279)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCC-----CHHHHHH---HHHCCCCEECCCCCCCHHHHCC---CCCCCCHHHHH
T ss_conf 44999999999986337993576117857-----9999999---9983971230766767687576---58998889999
Q ss_pred HHHHHHHHHHHHHCCCCC--EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 122444556553126885--178650577774888999998764498299980665553234577544632211356454
Q gi|254780434|r 193 IHVMQTREEEKIKTGKFV--PIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLF 270 (362)
Q Consensus 193 ~~v~~~~~~~~~~~~~~~--Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~ 270 (362)
..+...+. ..-.+ =.++-|. .+.++..+++-.+.+.++|- |-+|..+..++++-. .. .++ .
T Consensus 141 ~tl~~~k~-----aGl~vCsGgIiGlG--Et~edrve~a~~L~eL~~ds-VPIN~liPi~GTPLe-~~----~l~----~ 203 (279)
T PRK08508 141 QTCLNAKE-----AGLGLCSGGIFGLG--ESWEDRISMLKSLASLSPHS-TPINFFIPNPALPLD-TP----TLS----A 203 (279)
T ss_pred HHHHHHHH-----CCCEEECCCEEECC--CCHHHHHHHHHHHHHCCCCE-ECCCCCCCCCCCCCC-CC----CCC----H
T ss_conf 99999998-----19948678544789--99899999999998389987-515676589999888-89----999----9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCC-HHHH-HHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 2468999999974089748999678899-9999-999983999754527877069789999999999999983899
Q gi|254780434|r 271 LKSTIALAKIRQRVGPKIAIIGTGGISS-TKDA-LDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362)
Q Consensus 271 ~~al~~i~~i~~~~~~~i~IIg~GGI~s-~~Da-~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362)
.-.++.|+.+|=.. ++..|--+||-.. -.|. ...+++||+.+.++--+--.|...-.+ .+.+++.||.
T Consensus 204 ~e~lr~iAl~Rlil-P~a~Ir~agGRe~~l~~~q~~~~~aGaN~i~~G~yLTt~G~~~~~D-----~~mi~~lG~~ 273 (279)
T PRK08508 204 DEALEIVRLAKEAL-PNARLMVAGGREVVFGERQYEIFEAGANAIVIGDYLTTKGEAPKKD-----IEKLKSLGFE 273 (279)
T ss_pred HHHHHHHHHHHHHC-CCCEEEECCCHHHHCHHHHHHHHHHCCCEEEECCCCCCCCCCHHHH-----HHHHHHCCCE
T ss_conf 99999999999978-9876562465244556369999984684688866527899786799-----9999986993
No 323
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006268 These sequences are one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterised member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.; GO: 0016832 aldehyde-lyase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=91.20 E-value=0.55 Score=26.45 Aligned_cols=93 Identities=16% Similarity=0.276 Sum_probs=63.9
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-CCCCC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 00121000110454246788776555420675526983033-36532----21100002343211112244455655312
Q gi|254780434|r 132 PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINIS-SPNTP----GLRSLQKKKNLERLLIHVMQTREEEKIKT 206 (362)
Q Consensus 132 ~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiS-CPNt~----g~~~~~~~~~l~~~l~~v~~~~~~~~~~~ 206 (362)
.++||..==|- ...+++|...+|.+ ++=+ |||+- |-|.+.......-.+.+|-. .|.
T Consensus 131 ~~KPVLLKRG~----~aTi~EwL~AAEYI--------l~~GsN~~ViLCERGIRTfE~~TR~TLD~saV~~------~K~ 192 (262)
T TIGR01361 131 QGKPVLLKRGM----GATIEEWLEAAEYI--------LSEGSNGNVILCERGIRTFEKSTRNTLDLSAVPL------LKK 192 (262)
T ss_pred CCCCEEEECCC----CHHHHHHHHHHHHH--------HHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH------HHH
T ss_conf 37975530772----15899999999999--------8468899548997585676300245333789999------986
Q ss_pred CCCCEEEEECCCCCCH-HHHHHHHHHHHHCCCCEEEE
Q ss_conf 6885178650577774-88899999876449829998
Q gi|254780434|r 207 GKFVPIFLKISPDLSE-EELDDIAVEVLSHKVEGIIV 242 (362)
Q Consensus 207 ~~~~Pi~vKLsPd~~~-~~i~~ia~~a~~~g~dGiv~ 242 (362)
.++.||+|=-|.=... +-+..+|+++...|+||+.+
T Consensus 193 ~tHLPi~VDPSH~~GrRdLV~plA~AA~A~GADgl~i 229 (262)
T TIGR01361 193 ETHLPIIVDPSHAAGRRDLVLPLAKAAIAAGADGLMI 229 (262)
T ss_pred CCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 0589878718798762457889999989757473689
No 324
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=91.11 E-value=1.3 Score=24.01 Aligned_cols=87 Identities=14% Similarity=0.191 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 05777748889999987644982999806655532345775446322113564542468999999974089748999678
Q gi|254780434|r 216 ISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGG 295 (362)
Q Consensus 216 LsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GG 295 (362)
.+|--+.+.+.++++.+++.|+|.|.+-+ +.++..+ ..+-.+|..+++.+ ++||===.=
T Consensus 148 ~sP~ht~~yy~~~a~~l~~~G~d~i~iKD----maGll~P---------------~~a~~LV~alk~~~--~lpI~~HtH 206 (580)
T PRK09282 148 TSPVHTLETWVDLAKQLEEMGCDSICIKD----MAGLLTP---------------YAAYELVSALKKEV--DLPVHLHCH 206 (580)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEC----CCCCCCH---------------HHHHHHHHHHHHHC--CCCEEEEEC
T ss_conf 58876389999999999974998899726----6557898---------------99999999999861--981699824
Q ss_pred CCCHHH---HHHHHHCCCCEEEECHHHHCCC
Q ss_conf 899999---9999983999754527877069
Q gi|254780434|r 296 ISSTKD---ALDKIMAGANLIQLYSAMIYEG 323 (362)
Q Consensus 296 I~s~~D---a~e~l~aGAs~VQi~Tali~~G 323 (362)
-.+|-. .++-+.||||.|.++..-+-.|
T Consensus 207 ~t~G~~~a~~l~A~eAGvdivD~a~~~~s~g 237 (580)
T PRK09282 207 ATTGLATMTYLKAVEAGVDILDTAISSMSMG 237 (580)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 7764799999999984888670013553488
No 325
>TIGR00734 hisAF_rel hisA/hisF family protein; InterPro: IPR004650 This family of proteins has so far been found in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. Proteins are homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. However, the function of proteins in this group is unknown..
Probab=90.72 E-value=0.92 Score=24.93 Aligned_cols=81 Identities=25% Similarity=0.299 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH
Q ss_conf 48889999987644982999806655532345775446322113564542468999999974089748999678899999
Q gi|254780434|r 222 EEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKD 301 (362)
Q Consensus 222 ~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~D 301 (362)
++-+.++.+.+..+.++|+++-. +.. .|..+|.- ..++.+++... .-|++-.|||.--+|
T Consensus 148 ~~~leevrd~l~~f~~~GlI~Ld---------I~s----VGt~~G~n-----~ell~~~l~l~--e~PV~~GGGi~g~Ed 207 (230)
T TIGR00734 148 EESLEEVRDLLNSFDLDGLIVLD---------ISS----VGTSKGVN-----LELLKKVLELS--ERPVILGGGIKGVED 207 (230)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEC---------CCC----CCCCCCCC-----HHHHHHHHHHH--CCCEEECCCCCCCCH
T ss_conf 45688887530663101379833---------633----05677878-----88999886442--487140687367510
Q ss_pred HHHHHHCCCCEEEECHHHHCCC
Q ss_conf 9999983999754527877069
Q gi|254780434|r 302 ALDKIMAGANLIQLYSAMIYEG 323 (362)
Q Consensus 302 a~e~l~aGAs~VQi~Tali~~G 323 (362)
--..-..|.++|-|+||+ .+|
T Consensus 208 lEl~~~mGv~avLvatA~-HkG 228 (230)
T TIGR00734 208 LELLKEMGVSAVLVATAV-HKG 228 (230)
T ss_pred HHHHHHCCCCEEEEEEEE-CCC
T ss_conf 788885687657553210-047
No 326
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=90.45 E-value=1.4 Score=23.62 Aligned_cols=141 Identities=18% Similarity=0.202 Sum_probs=77.3
Q ss_pred CCCE--EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC---C---CCCH-HHHHHHHHHHH
Q ss_conf 5526--983033365322110000234321111224445565531268851786505---7---7774-88899999876
Q gi|254780434|r 163 IASY--FTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKIS---P---DLSE-EELDDIAVEVL 233 (362)
Q Consensus 163 ~aD~--iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLs---P---d~~~-~~i~~ia~~a~ 233 (362)
+||+ +.+|+.+|+ +.+.+.++-.-..+. ....+|+++=.- + |.++ +.+...++.+.
T Consensus 106 GAdaV~~~v~~Gs~~--------E~~~l~~l~~l~~ea-------~~~GlPll~~~yprG~~~~~~~d~~~ia~aaRia~ 170 (266)
T PRK07226 106 GADAVSVHVNVGSET--------EAEMLEDLGRIAREC-------EEWGMPLLAMMYPRGPKIKNEYDPEVVAHAARVGA 170 (266)
T ss_pred CCCEEEEEEECCCCC--------HHHHHHHHHHHHHHH-------HHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 877899985479983--------799999999999999-------98599569997346887777875999999999999
Q ss_pred HCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC--CHHHH----HHHHH
Q ss_conf 4498299980665553234577544632211356454246899999997408974899967889--99999----99998
Q gi|254780434|r 234 SHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGIS--STKDA----LDKIM 307 (362)
Q Consensus 234 ~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~--s~~Da----~e~l~ 307 (362)
|.|+|-|=. +- +|. .+..+++-+.+ .+|++-.||=. +.+|. .+-+.
T Consensus 171 ELGADiVKv-~y-------------------~gd------~e~f~~vv~~~--~vPVliaGG~k~~~~~~~L~~v~~ai~ 222 (266)
T PRK07226 171 ELGADIIKT-NY-------------------TGD------PESFREVVEGC--PVPVVIAGGPKTGSDLEFLQMVEDAME 222 (266)
T ss_pred HHCCCEEEE-CC-------------------CCC------HHHHHHHHHHC--CCCEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 967998983-59-------------------999------89999999847--987899578888988999999999997
Q ss_pred CCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 3999754527877069789999999999999983899778961
Q gi|254780434|r 308 AGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIR 350 (362)
Q Consensus 308 aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~i 350 (362)
+||.=|-++.- +|+-+. ...+.+.|...-- .=.|++|+.
T Consensus 223 aGa~Gv~~GRN-vfQ~~~-p~~~~~al~~iVH--~~~s~~eAl 261 (266)
T PRK07226 223 AGAAGVAIGRN-IFQHED-PAKITRAISAVVH--EGADPEEAL 261 (266)
T ss_pred CCCCEEEECCH-HHCCCC-HHHHHHHHHHHHC--CCCCHHHHH
T ss_conf 59946652610-235798-9999999999850--999999999
No 327
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=90.37 E-value=1.5 Score=23.57 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=47.9
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 65057777488899999876449829998066555323457754463221135645424689999999740897489996
Q gi|254780434|r 214 LKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGT 293 (362)
Q Consensus 214 vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~ 293 (362)
+-+..+.+. +++++++.+.++|.|-++.. +|.. .+.-.+++..++++--.+++|+ +
T Consensus 31 i~lG~~~s~---eeiv~~A~~e~ad~IglSsL-------------------~g~h-~~~~~~l~~~L~e~G~~di~v~-v 86 (122)
T cd02071 31 IYTGLRQTP---EEIVEAAIQEDVDVIGLSSL-------------------SGGH-MTLFPEVIELLRELGAGDILVV-G 86 (122)
T ss_pred EECCCCCCH---HHHHHHHHHCCCCEEEEECC-------------------CCCH-HHHHHHHHHHHHHCCCCCCEEE-E
T ss_conf 967998899---99999999739989999646-------------------5544-7899999999997699984699-9
Q ss_pred CCCCCHHHHHHHHHCCCCEE
Q ss_conf 78899999999998399975
Q gi|254780434|r 294 GGISSTKDALDKIMAGANLI 313 (362)
Q Consensus 294 GGI~s~~Da~e~l~aGAs~V 313 (362)
||+--.+|..++..+|.+.|
T Consensus 87 GG~Ip~~d~~~l~~~Gv~~v 106 (122)
T cd02071 87 GGIIPPEDYELLKEMGVAEI 106 (122)
T ss_pred ECCCCHHHHHHHHHCCCCEE
T ss_conf 45649899999997799889
No 328
>TIGR01212 TIGR01212 radical SAM protein, TIGR01212 family; InterPro: IPR005911 This uncharacterised protein family shows significant similarity to IPR005910 from INTERPRO, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain..
Probab=90.12 E-value=1.5 Score=23.44 Aligned_cols=192 Identities=14% Similarity=0.225 Sum_probs=103.7
Q ss_pred HHHHHHHHHH-HHHCCCCCCEEECCCC-CHHHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 7889998764-1000121000110454-246788776555420675526-983033365322110000234321111224
Q gi|254780434|r 120 YHTVFSRLSK-IQPTSPIGINLGANKD-SKDFILDYVSGIRLFFTIASY-FTINISSPNTPGLRSLQKKKNLERLLIHVM 196 (362)
Q Consensus 120 ~~~~~~~l~~-~~~~~pi~vsI~~~~~-s~~~~~dy~~~~~~~~~~aD~-iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~ 196 (362)
++.+.+.... +..+-.||+|||.-.| -+|+.-|+.+-. ...+-|. +|+-+=+=|-.-+...--...+.++.+++.
T Consensus 95 ve~Lk~~y~~aL~~~~vVGlsvgTRPDC~P~~VLDlL~ey--~~~GyevWvELGLQtah~~TL~~INRgHd~~~y~~a~~ 172 (307)
T TIGR01212 95 VEVLKEMYEQALSEDDVVGLSVGTRPDCVPDEVLDLLAEY--KERGYEVWVELGLQTAHDRTLKKINRGHDFACYVDAVK 172 (307)
T ss_pred HHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHH--HHCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 6888899998763278057753688987747899999999--54975899960535655899998514378789999999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEE------CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44556553126885178650577774888999998764498299980------665553234577544632211356454
Q gi|254780434|r 197 QTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVS------NTTLSRKGVQCSDNHEQDGGLSGSPLF 270 (362)
Q Consensus 197 ~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~------NT~~~~~~~~~~~~~~~~GGlSG~~i~ 270 (362)
..+..-..-. . =+++-||-+ +.+++.+-|+.+.+.++|||=+- -|.+.. .-..|=+..-..-
T Consensus 173 ~~~krGikVC-~--H~I~GLPgE-~~~~~~eTak~~~~l~vdGiKiH~LhvvkGt~m~k--------~Y~~G~~~~l~~e 240 (307)
T TIGR01212 173 RARKRGIKVC-S--HVILGLPGE-DREEMLETAKIVASLDVDGIKIHPLHVVKGTKMAK--------QYEKGELKTLSLE 240 (307)
T ss_pred HHHHCCCEEE-E--EEEECCCCC-CHHHHHHHHHHHHHCCCCEEEEEEEEEEECCHHHH--------HHHCCCEEECCHH
T ss_conf 9976598899-9--987428988-88899999999983798848872017873575788--------7545740104767
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCC-CCEEEECHHHHC--CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 246899999997408974899967889999999999839-997545278770--697899999999999999838
Q gi|254780434|r 271 LKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAG-ANLIQLYSAMIY--EGISLPKRIIQGLSDFLNKEN 342 (362)
Q Consensus 271 ~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aG-As~VQi~Tali~--~Gp~~~~~I~~~L~~~l~~~G 342 (362)
.-... +.++=+.++|++- +.+|.+- ++-=.+-+..++ ++-. +|...+.+.|+++|
T Consensus 241 ~Y~~~-~~d~le~lpP~vv-------------~HRi~~dk~~~~~~i~P~W~tf~~k~---~~~~~i~~~Le~rG 298 (307)
T TIGR01212 241 EYISL-ACDFLEHLPPEVV-------------VHRISGDKAPRETLIAPEWCTFKNKW---EVMNKIEEELERRG 298 (307)
T ss_pred HHHHH-HHHHHHCCCCCEE-------------EEEECCCCCCCCCEECCCCHHHHHHH---HHHHHHHHHHHHCC
T ss_conf 79999-9999850898559-------------98412777884515567402267899---99999999985326
No 329
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830 Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterised as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase, which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and apparently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea, which lack a threonine dehydratase (mainly Euryarchaeota), should contain both CimA and LeuA genes. This is true for archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in IPR005671 from INTERPRO and one in IPR005675 from INTERPRO which may fulfil these roles. Proteins from other species, which have only one hit to this entry and lack threonine dehydratase, are very likely to be LeuA enzymes.; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=89.80 E-value=1.4 Score=23.77 Aligned_cols=102 Identities=16% Similarity=0.268 Sum_probs=58.5
Q ss_pred EEEEECCC-CCCH---HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 17865057-7774---8889999987644982999806655532345775446322113564542468999999974089
Q gi|254780434|r 211 PIFLKISP-DLSE---EELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGP 286 (362)
Q Consensus 211 Pi~vKLsP-d~~~---~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~ 286 (362)
=++|-+|| |.|. +.+.++.+.|+++|||=|.+..|++- ..|. ..-.+++++.+.+.+
T Consensus 127 GLiVEfSAEDATRtd~dfLIk~~k~A~eAGADRi~~~DTVGV----~~P~---------------km~~l~k~~k~~~kK 187 (371)
T TIGR02090 127 GLIVEFSAEDATRTDIDFLIKVFKKAEEAGADRINVADTVGV----LTPQ---------------KMEELIKKIKENVKK 187 (371)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC----CCHH---------------HHHHHHHHHHHHHCC
T ss_conf 735531778876586789999987133216777550785563----6826---------------799999999986358
Q ss_pred CEEEEEECCCCCHHHH-------HHHHHCCCCEEEECHHHHC-----CCHHHHHHHHHHHHHHH
Q ss_conf 7489996788999999-------9999839997545278770-----69789999999999999
Q gi|254780434|r 287 KIAIIGTGGISSTKDA-------LDKIMAGANLIQLYSAMIY-----EGISLPKRIIQGLSDFL 338 (362)
Q Consensus 287 ~i~IIg~GGI~s~~Da-------~e~l~aGAs~VQi~Tali~-----~Gp~~~~~I~~~L~~~l 338 (362)
+.|| +|++=.|. .--++|||..|.+ | +- -|..-+.++.-.|..+.
T Consensus 188 d~~~----sVHCHNDFGlAtANsi~gv~aGA~~vH~-T--vNGiGERAGNAaLEEVV~AL~~LY 244 (371)
T TIGR02090 188 DLPV----SVHCHNDFGLATANSIAGVLAGAEQVHV-T--VNGIGERAGNAALEEVVMALKVLY 244 (371)
T ss_pred CCCE----EEEEECCCCHHHHHHHHHHHCCCEEEEE-E--ECCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 8705----8862086018899999997228357735-5--557610134588999999989871
No 330
>TIGR00262 trpA tryptophan synthase, alpha subunit; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan , : L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H_2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) , . The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25 0dentity to the 45-residue connector of the Saccharomyces cerevisiae polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism. ; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process.
Probab=89.69 E-value=1.7 Score=23.21 Aligned_cols=215 Identities=20% Similarity=0.239 Sum_probs=110.3
Q ss_pred CEEECCCC--CCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 74853468--8867798887403675241020013687899886268842555410000247777788999876410001
Q gi|254780434|r 57 PLGMAAGY--DKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTS 134 (362)
Q Consensus 57 PiglAaG~--dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~ 134 (362)
|+..+.-+ +...+.++.+.+.|...+++|---..|-...| .+.. ...+++- -|+...-.-.+.+.++....+.
T Consensus 14 p~~~~g~p~~~~~~~~~~~~~~~g~~~~~~g~p~~dp~~dg~--~~~~-~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~ 88 (262)
T TIGR00262 14 PFVTAGDPDLETSLEILKTLVEAGADALELGVPFSDPLADGP--TIQA-ADLRALR--AGVNPEKAFELLKKVREKGPNI 88 (262)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCC--HHHH-HHHHHHH--HCCCHHHHHHHHHHHHHHCCCC
T ss_conf 455316652557899999998617510000464223112440--2335-6678876--1353788999999887403434
Q ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 21000110454246788776555420675526983033365322110000234321111224445565531268851786
Q gi|254780434|r 135 PIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFL 214 (362)
Q Consensus 135 pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~v 214 (362)
|++.-.-.|..-....+.|...+++.+ .|.+-+ |..+ +... ..++.... ...+..+.
T Consensus 89 p~~~~~~~~~~~~~g~~~~~~~~~~~g--~~~~~~----~d~p----~~~~---~~~~~~~~----------~~~~~~~~ 145 (262)
T TIGR00262 89 PIGLLTYYNLIFRLGVDEFYAKAKEAG--VDGLLV----PDLP----LEEA---GDLLEAAK----------KHGVDPIF 145 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCEEE----CCCC----CHHH---HHHHHHHH----------HCCCCEEE
T ss_conf 136777776787503689999988616--540220----2466----0113---57888887----------60763368
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 5057777488899999876449829998066555323457754463221135--64542468999999974089748999
Q gi|254780434|r 215 KISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSG--SPLFLKSTIALAKIRQRVGPKIAIIG 292 (362)
Q Consensus 215 KLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG--~~i~~~al~~i~~i~~~~~~~i~IIg 292 (362)
-.+|+..++.+..+++.. .|++-.-. +. |+.| ..+.......++.++... ..|+.-
T Consensus 146 ~~~p~~~~~~~~~~~~~~-----~g~~y~~~---~~------------g~~g~~~~~~~~~~~~~~~~~~~~--~~p~~~ 203 (262)
T TIGR00262 146 LVAPTTPDERLKAIAEKS-----EGFVYLVS---VT------------GVTGARNRVESALEELLKRLKALS--AKPVLV 203 (262)
T ss_pred EECCCCCHHHHHHHHHHH-----CCCEEEEE---CC------------CCCCHHHHHHHHHHHHHHHHHHCC--CCCCHH
T ss_conf 754888777889888750-----67133310---01------------431014554456899999876204--443100
Q ss_pred ECCCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf 67889999999999839997545278770
Q gi|254780434|r 293 TGGISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 293 ~GGI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
.-||...+++.+...+|++.+-++++++.
T Consensus 204 g~g~~~~~~~~~~~~~g~~g~~~g~~~~~ 232 (262)
T TIGR00262 204 GFGISKPEHVKELKDAGADGVIVGSALVK 232 (262)
T ss_pred CCCCCCHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 14666568899987404453002478999
No 331
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=89.35 E-value=1.8 Score=23.05 Aligned_cols=125 Identities=20% Similarity=0.267 Sum_probs=69.8
Q ss_pred CCCEEEEECCC--CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC----------------------CCCCCC----
Q ss_conf 88517865057--77748889999987644982999806655532345----------------------775446----
Q gi|254780434|r 208 KFVPIFLKISP--DLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQ----------------------CSDNHE---- 259 (362)
Q Consensus 208 ~~~Pi~vKLsP--d~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~----------------------~~~~~~---- 259 (362)
.+..|.|-|.| +.+.+.+.+-++.+.++|+|+|+++.....+..+. .+.+..
T Consensus 323 ~~~~i~vEldpP~~~d~~~~~~~a~~l~~~Gvdai~i~D~~~a~~R~~~~a~a~~l~~~~gie~i~h~tcRDRN~ialqs 402 (608)
T PRK08645 323 KKFTVIVELDPPKGLDTDKFLEGARALKEAGVDAITLADNSLATVRISNIALASLIKQEYGIEPLVHITCRDRNLIGLQS 402 (608)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHCHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHH
T ss_conf 79679999549999987899999999987699789746887303311699999999997399726886204532999999
Q ss_pred -CCC----------CCCCC-----------CCCHH-HHHHHHHHHHHCCC---------CEEEEEECCCCCH--------
Q ss_conf -322----------11356-----------45424-68999999974089---------7489996788999--------
Q gi|254780434|r 260 -QDG----------GLSGS-----------PLFLK-STIALAKIRQRVGP---------KIAIIGTGGISST-------- 299 (362)
Q Consensus 260 -~~G----------GlSG~-----------~i~~~-al~~i~~i~~~~~~---------~i~IIg~GGI~s~-------- 299 (362)
..| -++|- ++++. |..+++.+++.-.+ .-+=+-+||..++
T Consensus 403 ~LlGa~~lGi~nvL~lTGDp~~~Gd~p~ak~Vfd~dS~~Li~~i~~ln~G~~~~G~~l~~~~~f~~g~a~np~~~~~~~~ 482 (608)
T PRK08645 403 HLLGLSALGIRNILAITGDPAKVGDFPGATSVYDLNSIGLIKLIKQLNDGISYSGKPLGKKTNFSIGGAFNPNVRNLDKA 482 (608)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHH
T ss_conf 98532661986489964889887999998212147789999999998378788888178999757846318999985999
Q ss_pred -HHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHH
Q ss_conf -999999983999754527877069789999999999
Q gi|254780434|r 300 -KDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLS 335 (362)
Q Consensus 300 -~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~ 335 (362)
+-..+++.+||+.+| |..+|. +..+.++.+..+
T Consensus 483 ~~rl~kKi~aGA~f~~--TQpv~d-~~~~~~~~~~~~ 516 (608)
T PRK08645 483 VKRLEKKIEAGADYFI--TQPIYD-EELLEELYEATK 516 (608)
T ss_pred HHHHHHHHHCCCCEEE--ECCCCC-HHHHHHHHHHHH
T ss_conf 9999999977986898--556589-999999999852
No 332
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=89.08 E-value=1.8 Score=22.92 Aligned_cols=139 Identities=12% Similarity=0.229 Sum_probs=81.6
Q ss_pred CCCEEECCCCC--CCHHHHHH--------HHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHH
Q ss_conf 99748534688--86779888--------740367524102001368789988626884255541000024777778899
Q gi|254780434|r 55 SNPLGMAAGYD--KNAEVPIE--------LLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVF 124 (362)
Q Consensus 55 ~nPiglAaG~d--k~~~~~~~--------l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~ 124 (362)
.+|+.+-||+. .+-+.+.. ..++|++++==+|..+.-| ... ..|+.+|++.-+
T Consensus 14 ~~p~~~iaGPC~vEs~e~~~~iA~~l~~~~~~~~~~~ifK~sfdkaNR---------------TS~--~sfqG~G~eegL 76 (281)
T PRK12457 14 DLPFVLFGGINVLESLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANR---------------SSI--HSYRGVGLDEGL 76 (281)
T ss_pred CCCEEEEECCCHHHCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC---------------CCC--CCCCCCCHHHHH
T ss_conf 980589916646659999999999999999972998784377887768---------------999--777898889999
Q ss_pred HHHHHHHH--CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 98764100--01210001104542467887765554206755269830-3336532211000023432111122444556
Q gi|254780434|r 125 SRLSKIQP--TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTIN-ISSPNTPGLRSLQKKKNLERLLIHVMQTREE 201 (362)
Q Consensus 125 ~~l~~~~~--~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiN-iSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~ 201 (362)
+-|++.+. +.|+.--|.-. .-++.+.+++|.+-|- .-|-|| ++|.++
T Consensus 77 ~~L~~ik~~~gl~viTeVh~~-----------~q~~~v~e~vDilQIpAr~~rqt-------------dLL~a~------ 126 (281)
T PRK12457 77 RIFEEVKARFGVPVITDVHEV-----------EQAAPVAEVADVLQVPAFLARQT-------------DLVVAI------ 126 (281)
T ss_pred HHHHHHHHHHCCCEEEEECCH-----------HHHHHHHHHHHHEEECHHHCCCC-------------HHHHHH------
T ss_conf 999999998799679985888-----------89999986502123443750281-------------899999------
Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 5531268851786505777748889999987644982999806
Q gi|254780434|r 202 EKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSN 244 (362)
Q Consensus 202 ~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~N 244 (362)
..+.+||.+|=+-.++.++....++.+.+.|.+-|++|-
T Consensus 127 ----~~t~kpV~lKkGq~~s~~e~~~aaeki~s~Gn~~vilcE 165 (281)
T PRK12457 127 ----AKTGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCE 165 (281)
T ss_pred ----HHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf ----973992795587769999999999999975998499983
No 333
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=88.77 E-value=1.9 Score=22.78 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=49.7
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 50577774888999998764498299980665553234577544632211356454246899999997408974899967
Q gi|254780434|r 215 KISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTG 294 (362)
Q Consensus 215 KLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~G 294 (362)
-+..+.+. ++++++|.+.++|.|.++. |||... .........+++.-..+++++..|
T Consensus 36 ~lG~~~~p---e~~v~~A~~~~ad~igiSs-------------------l~G~~~-~~~~~l~~~l~~~g~~di~vvvGG 92 (137)
T PRK02261 36 NLGVMTSQ---EEFIDAAIETDADAILVSS-------------------LYGHGE-IDCRGLREKCIEAGLGDILLYVGG 92 (137)
T ss_pred ECCCCCCH---HHHHHHHHHCCCCEEEECC-------------------CCCCCC-HHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 46887999---9999999873999999711-------------------112661-279999999996799999699836
Q ss_pred CCC-----CHHHHHHHHHCCCCEEEECHHHHCCCHH-HHHHHHHHHHHHHHH
Q ss_conf 889-----9999999998399975452787706978-999999999999998
Q gi|254780434|r 295 GIS-----STKDALDKIMAGANLIQLYSAMIYEGIS-LPKRIIQGLSDFLNK 340 (362)
Q Consensus 295 GI~-----s~~Da~e~l~aGAs~VQi~Tali~~Gp~-~~~~I~~~L~~~l~~ 340 (362)
.|. -.+|.-.+..+|.++| | ||+ -+.++.+.|++.|++
T Consensus 93 ~i~i~~~dp~~~~~~L~~~Gv~~V-------F-~pGT~~~~ii~~i~~~l~~ 136 (137)
T PRK02261 93 NLVVGKHDFEEVEKKFKEMGFDRV-------F-APGTDLEEVIDDLKADLNA 136 (137)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCEE-------E-CCCCCHHHHHHHHHHHHHC
T ss_conf 216788783999999997797988-------7-9788999999999998633
No 334
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=88.46 E-value=2 Score=22.65 Aligned_cols=32 Identities=16% Similarity=0.115 Sum_probs=20.8
Q ss_pred HHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHH
Q ss_conf 99999998399975452787706978999999999
Q gi|254780434|r 300 KDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGL 334 (362)
Q Consensus 300 ~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L 334 (362)
+.+.+.+..|++-+.+|| ++-+....+|++.|
T Consensus 259 ~q~~~L~~~Gv~glHfYT---lN~~~~t~~I~~~L 290 (296)
T PRK09432 259 DMVKILSREGVKDFHFYT---LNRAELTYAICHTL 290 (296)
T ss_pred HHHHHHHHCCCCEEEEEC---CCCHHHHHHHHHHH
T ss_conf 999999977999559932---89839999999995
No 335
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=88.12 E-value=2.1 Score=22.51 Aligned_cols=167 Identities=16% Similarity=0.092 Sum_probs=90.6
Q ss_pred HHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99987641000121000110454246788776555420675526983033365322110000234321111224445565
Q gi|254780434|r 123 VFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEE 202 (362)
Q Consensus 123 ~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~ 202 (362)
..+.+++.+|+..|.+-+ +..+++... .++ .+..+||++++==++|. +.+.. ++...+.
T Consensus 46 aV~~lr~~~P~~~IvAD~-Kt~DaG~~E---a~~--a~~aGAD~vTVlg~A~~----------~TI~~---~~~~a~~-- 104 (220)
T PRK13305 46 AVKALREQCPDKIIVADW-KVADAGETL---AQQ--AFGAGANWMTIICAAPL----------ATVEK---GHAVAQS-- 104 (220)
T ss_pred HHHHHHHHCCCCEEEEEE-EECCCHHHH---HHH--HHHCCCCEEEEECCCCH----------HHHHH---HHHHHHH--
T ss_conf 999999878998799875-452625999---999--98659988999566897----------99999---9999998--
Q ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 53126885178650577774888999998764498299980665553234577544632211356454246899999997
Q gi|254780434|r 203 KIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQ 282 (362)
Q Consensus 203 ~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~ 282 (362)
.. +-+.+-|--+-+ + +-++...+.|++-++. .+-. +. + .+|.......+..++.+..
T Consensus 105 ---~g--~~v~vDli~~~~---~-~~ak~~~~lgv~~v~~-H~g~-------D~---q---~~g~~~~~~~l~~~k~~~~ 161 (220)
T PRK13305 105 ---CG--GEIQIELFGNWT---L-DDARDWHRIGVRQAIY-HRGR-------DA---Q---ASGQQWGEADLARMKALSD 161 (220)
T ss_pred ---CC--CEEEEEECCCCC---H-HHHHHHHHCCCCEEEE-EECC-------CH---H---HCCCCCCHHHHHHHHHHHH
T ss_conf ---09--989998458998---7-8999999869988999-8333-------67---6---5189863101999998760
Q ss_pred HCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-CCH-HHHHHHHHHHHHH
Q ss_conf 408974899967889999999999839997545278770-697-8999999999999
Q gi|254780434|r 283 RVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY-EGI-SLPKRIIQGLSDF 337 (362)
Q Consensus 283 ~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~-~Gp-~~~~~I~~~L~~~ 337 (362)
-.+.|.-.|||. .+++.++...|++.+-++++..- +.| ...+++.+++.++
T Consensus 162 ---~~~~vaVAGGI~-~~~i~~~~~~~~~ivIvGraIt~A~dP~~aA~~~~~~I~~~ 214 (220)
T PRK13305 162 ---IGLELSITGGIT-PADLPLFKDIRVKAFIAGRALAGAANPAQVAGDFHAQIDAI 214 (220)
T ss_pred ---CCCEEEEECCCC-HHHHHHHHCCCCCEEEECHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf ---696499988878-88999997169989998936518999999999999999998
No 336
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=88.11 E-value=2.1 Score=22.50 Aligned_cols=122 Identities=12% Similarity=0.058 Sum_probs=67.7
Q ss_pred CCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHC-CCCCEEEE--ECCCCCCCCCCCCCC
Q ss_conf 410000247777788999876410001210001104542467887765554206-75526983--033365322110000
Q gi|254780434|r 108 AIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFF-TIASYFTI--NISSPNTPGLRSLQK 184 (362)
Q Consensus 108 ~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~-~~aD~iEi--NiSCPNt~g~~~~~~ 184 (362)
+++.+..=|.-|++-+.+.+.. .+.|+.-+|-+.+- .-..++|.+.+.++. .+.|++-= |+..|..
T Consensus 120 ~~~~~f~GP~fGI~g~R~~lg~--~~RPL~gtiiKPkl-GLs~~~~a~~~ye~~~GG~D~iKDDE~l~~q~f-------- 188 (412)
T TIGR03326 120 EFLRHFKGPQFGIEGVREFLGI--KDRPLLGTVPKPKV-GLSTEEHAKVAYELWSGGVDLLKDDENLTSQPF-------- 188 (412)
T ss_pred HHHHCCCCCCCCHHHHHHHHCC--CCCCEEEEEECCCC-CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--------
T ss_conf 9996189998874889998388--88860466556767-899799999999998257773126645679887--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 234321111224445565531268851786505777748889999987644982999806
Q gi|254780434|r 185 KKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSN 244 (362)
Q Consensus 185 ~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~N 244 (362)
..+.+-+.++.+.......+...++=..+-++- +.+++.+-++.+.+.|+..+ +.|
T Consensus 189 -~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~--~~~em~~ra~~a~e~G~~~v-Mv~ 244 (412)
T TIGR03326 189 -NRFEERVEKLYKVRDKVEAETGERKEYLANITA--PVREMERRAELVADLGGQYV-MVD 244 (412)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC--CHHHHHHHHHHHHHCCCCEE-EEC
T ss_conf -658999999999999999875874258864378--99999999999998399879-743
No 337
>pfam03932 CutC CutC family. Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length are found in both eukaryotes and bacteria.
Probab=87.98 E-value=2.2 Score=22.45 Aligned_cols=143 Identities=14% Similarity=0.178 Sum_probs=70.2
Q ss_pred CCCCCCEEEC----CCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 0121000110----45424678877655542067-552698303336532211000023432111122444556553126
Q gi|254780434|r 133 TSPIGINLGA----NKDSKDFILDYVSGIRLFFT-IASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTG 207 (362)
Q Consensus 133 ~~pi~vsI~~----~~~s~~~~~dy~~~~~~~~~-~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~ 207 (362)
..|+-|=|=. +--++++++-..+-++.+.. ++|-+.+-.=-++.. -|.+.+.+++.. .
T Consensus 50 ~ipv~vMIRPR~G~F~Ys~~E~~~M~~dI~~~~~~G~~GvV~G~L~~d~~-----iD~~~~~~li~~------------a 112 (202)
T pfam03932 50 KIPVYVMIRPRGGDFVYSDHELKAMLEDILKAVELGAPGVVLGALTADGE-----IDTKRMEKLIEA------------A 112 (202)
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC-----CCHHHHHHHHHH------------H
T ss_conf 99749998427998864989999999999999986989789988889998-----299999999997------------4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 88517865057777488899999876449829998066555323457754463221135645424689999999740897
Q gi|254780434|r 208 KFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPK 287 (362)
Q Consensus 208 ~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~ 287 (362)
...|+..--+=|... +..+..+.+.+.|++.|- | .||- .=..-.+..++++.+..+++
T Consensus 113 ~~l~~TFHRAfD~~~-d~~~al~~L~~lG~~rIL---T---------------SGg~---~~a~~g~~~L~~l~~~a~~~ 170 (202)
T pfam03932 113 GGLGVTFHRAFDMCP-DPEEALEQLIELGCERVL---T---------------SGGP---LSALEGLEKLASLVAQAGGR 170 (202)
T ss_pred CCCCEEEECHHHCCC-CHHHHHHHHHHCCCCEEE---C---------------CCCC---CCHHHHHHHHHHHHHHCCCC
T ss_conf 688559862043059-999999999975998787---5---------------7997---87667499999999965998
Q ss_pred EEEEEECCCCCHHHHHHHHH-CCCCEEEE
Q ss_conf 48999678899999999998-39997545
Q gi|254780434|r 288 IAIIGTGGISSTKDALDKIM-AGANLIQL 315 (362)
Q Consensus 288 i~IIg~GGI~s~~Da~e~l~-aGAs~VQi 315 (362)
+.|+..|||.. +.+.+++. .|++.+..
T Consensus 171 i~Im~GgGI~~-~N~~~l~~~~g~~~~H~ 198 (202)
T pfam03932 171 ISIMAGAGVNA-ENIAELRQLTGVAEVHG 198 (202)
T ss_pred EEEEECCCCCH-HHHHHHHHHHCCCEEEE
T ss_conf 49995799899-99999999719948856
No 338
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=87.79 E-value=2.2 Score=22.37 Aligned_cols=69 Identities=17% Similarity=0.116 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
Q ss_conf 54246788776555420675526983033365322110000234321111224445565531268851786505777748
Q gi|254780434|r 144 KDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEE 223 (362)
Q Consensus 144 ~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~ 223 (362)
.++.+.-.|+..+.+++..+||++.- +.+.|.+.+.+.++.+. +....+||++-+-|-.+..
T Consensus 141 p~~~~~~~di~~L~~K~~aGA~f~iT----------Q~~Fd~~~~~~f~~~~~--------~~Gi~vPIi~GImpi~s~~ 202 (274)
T cd00537 141 PEAPSLEEDIKRLKRKVDAGADFIIT----------QLFFDNDAFLRFVDRCR--------AAGITVPIIPGIMPLTSYK 202 (274)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH----------HHEECHHHHHHHHHHHH--------HCCCCCCEEEEEEECCCHH
T ss_conf 77416889999999999814266786----------44333999999999999--------7499986563211006789
Q ss_pred HHHHHHH
Q ss_conf 8899999
Q gi|254780434|r 224 ELDDIAV 230 (362)
Q Consensus 224 ~i~~ia~ 230 (362)
++..+++
T Consensus 203 ~~~~~~~ 209 (274)
T cd00537 203 QAKRFAK 209 (274)
T ss_pred HHHHHHH
T ss_conf 9999998
No 339
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=87.53 E-value=2.3 Score=22.27 Aligned_cols=73 Identities=19% Similarity=0.093 Sum_probs=34.1
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
Q ss_conf 99999876449829998066555323457754463221135645---424689999999740897489996788999999
Q gi|254780434|r 226 DDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPL---FLKSTIALAKIRQRVGPKIAIIGTGGISSTKDA 302 (362)
Q Consensus 226 ~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i---~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da 302 (362)
.+-++++.++|+|=|++ | .++.... ..|+-|+..+ .+.+..+....|..-.+-+++.-.|=|.+++|+
T Consensus 166 ~~eAqa~~~aGadiiv~-h-----mg~ttgG---~Igar~~~Sl~~~vel~~~~~~aar~v~kd~i~l~~GGPi~~p~da 236 (276)
T COG5564 166 FEEAQAMTKAGADIIVA-H-----MGLTTGG---LIGARSALSLADCVELIELAAEAARGVRKDVIPLCHGGPISMPEDA 236 (276)
T ss_pred HHHHHHHHHCCCCEEEE-C-----CCCCCCC---EECCCCCCCHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCHHH
T ss_conf 88999998707304650-3-----4431255---0125565678889999999999975430130453147886881355
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780434|r 303 LDKIM 307 (362)
Q Consensus 303 ~e~l~ 307 (362)
.--+.
T Consensus 237 ~yi~d 241 (276)
T COG5564 237 RYILD 241 (276)
T ss_pred HHHHH
T ss_conf 77875
No 340
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=87.38 E-value=2.3 Score=22.22 Aligned_cols=156 Identities=18% Similarity=0.159 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 77788999876410001210001104542467887765554206755269830333653221100002343211112244
Q gi|254780434|r 118 AGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQ 197 (362)
Q Consensus 118 ~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~ 197 (362)
.|.+ +.++|++..++.+|+.-+ +..+...... +.+ +..+||++.+--+++ .+.+...++...
T Consensus 39 ~G~~-~v~~lk~~~p~~~IflDl-K~~Di~~tva---~~~--~~~Gad~~tvh~~~g----------~~~~~~a~~~a~- 100 (202)
T cd04726 39 EGME-AVRALREAFPDKIIVADL-KTADAGALEA---EMA--FKAGADIVTVLGAAP----------LSTIKKAVKAAK- 100 (202)
T ss_pred HCHH-HHHHHHHHCCCCEEEEEE-EECCCHHHHH---HHH--HHHCCCEEEEECCCC----------HHHHHHHHHHHH-
T ss_conf 6899-999999878999799986-5336167999---999--970798899966689----------899999999886-
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 45565531268851786505777748889999987644982999806655532345775446322113564542468999
Q gi|254780434|r 198 TREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIAL 277 (362)
Q Consensus 198 ~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i 277 (362)
...+-+.+-+.-..+.+ ......+.+++-+++ .+ .......|..+ +...+
T Consensus 101 ---------~~~~~~~v~l~~~~~~~----~~~~~~~~~~~~~~~-~~----------~~d~~~~g~~~------~~~~~ 150 (202)
T cd04726 101 ---------KYGKEVQVDLIGVEDPE----KRAKLLKLGVDIVIL-HR----------GIDAQAAGGWW------PEDDL 150 (202)
T ss_pred ---------HCCCEEEEEEECCCCHH----HHHHHHHCCHHHHHH-HH----------HHHHHHCCCCC------HHHHH
T ss_conf ---------36967999983689999----999888568058899-98----------78777528997------08999
Q ss_pred HHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC--CHH
Q ss_conf 999974089748999678899999999998399975452787706--978
Q gi|254780434|r 278 AKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYE--GIS 325 (362)
Q Consensus 278 ~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~--Gp~ 325 (362)
+.+++..+.. +.-+|||. +++..+.+.+|||.+=|+.+ +++ .|.
T Consensus 151 ~~i~~~~~~~--i~VtpGIr-~~t~~~a~~~gad~iVVGR~-It~A~dP~ 196 (202)
T cd04726 151 KKVKKLLGVK--VAVAGGIT-PDTLPEFKKAGADIVIVGRA-ITGAADPA 196 (202)
T ss_pred HHHHHHCCCC--EEECCCCC-HHHHHHHHHCCCCEEEECCC-CCCCCCHH
T ss_conf 9998623996--78899988-54099999759999998983-45799989
No 341
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=87.17 E-value=2.4 Score=22.18 Aligned_cols=17 Identities=18% Similarity=0.450 Sum_probs=11.4
Q ss_pred HCCCHHHHHHHHHHHHH
Q ss_conf 50896788999999996
Q gi|254780434|r 14 THLDPEIAHHLSIVALK 30 (362)
Q Consensus 14 ~~~~pe~ah~~~~~~~~ 30 (362)
++.+||.|-.+|+.-.+
T Consensus 39 ~c~~pe~a~evtlqPi~ 55 (335)
T cd00717 39 LCKNPELAAEVTLQPVR 55 (335)
T ss_pred HHCCHHHHHHHHHCCHH
T ss_conf 85599999999864098
No 342
>PRK12999 pyruvate carboxylase; Reviewed
Probab=86.77 E-value=2.5 Score=22.00 Aligned_cols=85 Identities=13% Similarity=0.097 Sum_probs=48.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 77774888999998764498299980665553234577544632211356454246899999997408974899967889
Q gi|254780434|r 218 PDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGIS 297 (362)
Q Consensus 218 Pd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~ 297 (362)
|--+.+...++++.+++.|++-|.+ .|+.++..+ ..+..+|+.+++.+ ++||-==.=-+
T Consensus 687 ~~~~l~yy~~~a~~l~~~G~~~l~I----KDMAGLl~P---------------~aa~~LV~aLk~~~--~lPIhlHtHdT 745 (1147)
T PRK12999 687 AKYDLDYYVDLAKELEAAGAHILAI----KDMAGLLKP---------------AAAYKLVSALKEEV--DLPIHLHTHDT 745 (1147)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEE----CCCCCCCCH---------------HHHHHHHHHHHHHC--CCCEEEECCCC
T ss_conf 8766999999999999768988997----144546887---------------99999999998616--98459843678
Q ss_pred CHHH---HHHHHHCCCCEEEECHHHHCCC
Q ss_conf 9999---9999983999754527877069
Q gi|254780434|r 298 STKD---ALDKIMAGANLIQLYSAMIYEG 323 (362)
Q Consensus 298 s~~D---a~e~l~aGAs~VQi~Tali~~G 323 (362)
+|-. .++-+.||+|.|-.+.+-+-.|
T Consensus 746 sG~~~at~laA~eAGvDiVD~A~ssmSg~ 774 (1147)
T PRK12999 746 SGNGLATYLAAAEAGVDIVDVAMASMSGL 774 (1147)
T ss_pred CCHHHHHHHHHHHCCCCEEECCCHHHCCC
T ss_conf 85589999999985999896354110289
No 343
>TIGR00973 leuA_bact 2-isopropylmalate synthase; InterPro: IPR005671 The branched-chain amino acids are synthesised by a common pathway that leads from pyruvate and alpha-ketobutyrate to valine and isoleucine, and a branch that leads from the immediate precursor of valine, alpha-ketoisovalerate, to leucine . This pathway operates in archaea, bacteria, fungi and plants, but not mammals, making the enzymes suitable targets for the development of novel antibiotics and herbicides. Isopropylmalate synthase is the enzyme responsible for the the first committed step in the leucine branch of this biosynthetic pathway, the conversion of alpha-ketoisovalerate to alpha-isopropylmalate. It is either dimeric or tetrameric, depending on the organism, with a monomer molecular mass of 60-70 kDa, a dependence on divalent metal ions for activity, and an alkaline pH optimum , , , . Like many other biosynthetic enzymes it is subject to feedback inhibition by the end product of the pathway, leucine. This entry represents the isopropylmalate synthase most commonly found in bacteria. A related form of this enzyme is found mainly in eukaryotes and some other bacteria (IPR005668 from INTERPRO). A homologous family in archaea may represent isozymes and/or related enzymes (IPR005675 from INTERPRO). ; GO: 0003852 2-isopropylmalate synthase activity, 0009098 leucine biosynthetic process.
Probab=85.95 E-value=2.8 Score=21.72 Aligned_cols=171 Identities=19% Similarity=0.176 Sum_probs=83.5
Q ss_pred HHHHHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE--EECCCCCCHHHH-
Q ss_conf 88776555420-67552698303336532211000023432111122444556553126885178--650577774888-
Q gi|254780434|r 150 ILDYVSGIRLF-FTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIF--LKISPDLSEEEL- 225 (362)
Q Consensus 150 ~~dy~~~~~~~-~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~--vKLsPd~~~~~i- 225 (362)
+++..+.++.+ ..+| =+||| |+-=-+.-|.....++..+.+. +|=+ ++||-...+ ++
T Consensus 150 ~~fL~~~~E~AI~AGA--TtINi-----PDTVGY~~P~EyG~lI~~~~e~-----------VPNIdka~lSVHcHd-DLG 210 (514)
T TIGR00973 150 IEFLARVVEAAINAGA--TTINI-----PDTVGYALPAEYGNLIKGLREN-----------VPNIDKAILSVHCHD-DLG 210 (514)
T ss_pred HHHHHHHHHHHHHCCC--EEEEC-----CCCHHCCCHHHHHHHHHHHHCC-----------CCCCCEEEEEEECCC-CHH
T ss_conf 3899999999982798--28726-----8640003447899999998517-----------888461178761447-156
Q ss_pred --HHHHHHHHHCCCCEE-EEECCCCCCCC------------CCCCCCC-CCCC--CCCCCCCCHHHHHHHHHHHHHC---
Q ss_conf --999998764498299-98066555323------------4577544-6322--1135645424689999999740---
Q gi|254780434|r 226 --DDIAVEVLSHKVEGI-IVSNTTLSRKG------------VQCSDNH-EQDG--GLSGSPLFLKSTIALAKIRQRV--- 284 (362)
Q Consensus 226 --~~ia~~a~~~g~dGi-v~~NT~~~~~~------------~~~~~~~-~~~G--GlSG~~i~~~al~~i~~i~~~~--- 284 (362)
..=.-+|+++||+-| +.+|-++-|-| +..+-.. ..+| .=|-.|+..+.+.-|+..++.+
T Consensus 211 LAvANSL~AV~nGArQvEctiNGIGERAGNaaLEE~vmALkVRkD~~~d~~T~rPadstaPltnI~t~eIy~tS~Lvs~l 290 (514)
T TIGR00973 211 LAVANSLAAVKNGARQVECTINGIGERAGNAALEEVVMALKVRKDFLNDVETGRPADSTAPLTNINTKEIYRTSRLVSQL 290 (514)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 88998999997288189863146620022347999999999747652776567865344642246355678898999998
Q ss_pred -----CCCEEEEEEC-----------CCCCHHHHHHHHHCCCCEEEECHH-HHCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf -----8974899967-----------889999999999839997545278-770697899999999999999838997
Q gi|254780434|r 285 -----GPKIAIIGTG-----------GISSTKDALDKIMAGANLIQLYSA-MIYEGISLPKRIIQGLSDFLNKENEVN 345 (362)
Q Consensus 285 -----~~~i~IIg~G-----------GI~s~~Da~e~l~aGAs~VQi~Ta-li~~Gp~~~~~I~~~L~~~l~~~G~~s 345 (362)
++.-+|+|.+ ||-.-+.-||=|. +..|.+-.- ++. | -+-=.+.|+..|++.||+=
T Consensus 291 tgm~v~~NKAIVG~NAFAHeSGIHQDGvLK~k~TYEIm~--PE~iG~~~~~lvL-g---~~SGR~A~k~rL~~lGf~~ 362 (514)
T TIGR00973 291 TGMPVQPNKAIVGDNAFAHESGIHQDGVLKNKETYEIMS--PEDIGLTKEQLVL-G---KHSGRHALKKRLEELGFKL 362 (514)
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHH-H---HHHHHHHHHHHHHHHCCCC
T ss_conf 586878888500686002267722077025787542047--2004865212112-2---4446899988999828785
No 344
>TIGR00126 deoC deoxyribose-phosphate aldolase; InterPro: IPR011343 Class I aldolases catalyse carbon-carbon bond formation using a 'Schiff base' mechanism. This entry represents deoxyribose-phosphate aldolase, a widely distributed enzyme, which catalyses the following reversible reaction: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde While the physiological role of this enzyme remains unknown in eukaryotes, in prokaroytes it is thought to function in the catabolism of deoxyribonucleotides , . In all studied structures, the deoxyribose-phophate aldolase subunits adopt the classical eight-bladed TIM barrel fold , , . The oligomerisation state of the enzyme appears to depend on the living temperature of the organism - the Escherichia coli enzyme (P0A6L0 from SWISSPROT) is a homodimer, while the enzymes from the thermophilic microorganisms Thermus thermophilus and Aeropyrum pernix (Q9Y948 from SWISSPROT) are homotetramers. The degree of oligomerisation does not, however, appear to affect catalysis. ; GO: 0004139 deoxyribose-phosphate aldolase activity, 0009264 deoxyribonucleotide catabolic process, 0005737 cytoplasm.
Probab=85.68 E-value=1.7 Score=23.08 Aligned_cols=87 Identities=26% Similarity=0.364 Sum_probs=59.4
Q ss_pred EEEECCCCCCHHHHH-HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC----
Q ss_conf 786505777748889-999987644982999806655532345775446322113564542468999999974089----
Q gi|254780434|r 212 IFLKISPDLSEEELD-DIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGP---- 286 (362)
Q Consensus 212 i~vKLsPd~~~~~i~-~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~---- 286 (362)
+++... .+++++.. ..+..+.+.|++-+-. ..+++|..|..+ .-+..+++..++
T Consensus 129 ~~~~~~-~l~~~~~~~~~~~~~~~~g~~~~~~---------------~~g~~g~~g~~~-----~~~~~~~~~~~~~g~~ 187 (225)
T TIGR00126 129 VILETG-LLTDEEKVRKACEICLDAGADFVKT---------------STGFGGLGGATV-----EDVRLLRKTVGDLGVE 187 (225)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHCCHHHHH---------------CCCCCCCCCCCH-----HHHHHHHHHHHCCCCC
T ss_conf 334444-3103677888888776504012100---------------024444345548-----8999999864034630
Q ss_pred -CEEEEEECCCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf -748999678899999999998399975452787
Q gi|254780434|r 287 -KIAIIGTGGISSTKDALDKIMAGANLIQLYSAM 319 (362)
Q Consensus 287 -~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tal 319 (362)
.+-+-+.|||.+.+++..++.+||+.+.-..++
T Consensus 188 ~~~g~~~~gg~~~~~~~~~~~~~g~~~~g~~~~~ 221 (225)
T TIGR00126 188 KDIGVKASGGVRTAEDALALIEAGASRIGTSWGV 221 (225)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 0024234675300788999987312330100022
No 345
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=85.65 E-value=2.9 Score=21.62 Aligned_cols=35 Identities=14% Similarity=0.310 Sum_probs=30.9
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHH
Q ss_conf 089748999678899999999998399975452787
Q gi|254780434|r 284 VGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAM 319 (362)
Q Consensus 284 ~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tal 319 (362)
..+++.|+++|||. .+.+.++...|.|.+.++|-+
T Consensus 236 ~~~~~~i~~SGgi~-~~~i~~~a~~gvd~i~iG~~~ 270 (281)
T cd00516 236 GLPRVKIEASGGLD-EENIRAYAETGVDVFGVGTLL 270 (281)
T ss_pred CCCCEEEEEECCCC-HHHHHHHHHCCCCEEEECCCC
T ss_conf 78977999979999-999999996798999938221
No 346
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=85.29 E-value=3 Score=21.51 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=60.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 7865057777488899999876449829998066555------3234577544632211356454246899999997408
Q gi|254780434|r 212 IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLS------RKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVG 285 (362)
Q Consensus 212 i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~------~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~ 285 (362)
+++|+.+|-.+.....++....+.|.|-+ .|..-. +..+.....-.+..-++|.- +.+.-.++..+++.-.
T Consensus 586 lvaKmGqDGHdrGak~iA~~f~D~GfdV~--~~~lfqTPeE~a~~A~e~dvhvigisslaa~h-~tLVP~l~~~Lk~~g~ 662 (715)
T PRK09426 586 LVAKMGQDGHDRGAKVIATAFADLGFDVD--IGPLFQTPEEAARQAVENDVHVVGVSSLAAGH-KTLVPALIEALKKLGR 662 (715)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHCCEEEE--ECCCCCCHHHHHHHHHHCCCCEEEEECCCCCC-HHHHHHHHHHHHHCCC
T ss_conf 99627987210027899988875760686--16755899999999997599999982334544-2127999999996499
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCEE
Q ss_conf 9748999678899999999998399975
Q gi|254780434|r 286 PKIAIIGTGGISSTKDALDKIMAGANLI 313 (362)
Q Consensus 286 ~~i~IIg~GGI~s~~Da~e~l~aGAs~V 313 (362)
++++ +=||||--.+|...+..+|.++|
T Consensus 663 ~di~-VvvGGvIP~~D~~~L~~~GV~~i 689 (715)
T PRK09426 663 EDIM-VVVGGVIPPQDYDFLYEAGVAAI 689 (715)
T ss_pred CCCE-EEECCCCCHHHHHHHHHCCCCEE
T ss_conf 8867-99838688799999997697778
No 347
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=84.98 E-value=3.1 Score=21.42 Aligned_cols=169 Identities=15% Similarity=0.150 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 77788999876410001210001104542467887765554206755269830333653221100002343211112244
Q gi|254780434|r 118 AGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQ 197 (362)
Q Consensus 118 ~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~ 197 (362)
.|.+ ..+.|++.+++.++.+-. ++.++++.. .+++ +..+||++++- |= .+.+... .++..
T Consensus 42 eG~~-aV~~lr~~~pd~~IvAD~-Kt~D~G~~e---~~ma--~~aGAd~~tV~--g~--------A~~~TI~---~~i~~ 101 (217)
T COG0269 42 EGMR-AVRALRELFPDKIIVADL-KTADAGAIE---ARMA--FEAGADWVTVL--GA--------ADDATIK---KAIKV 101 (217)
T ss_pred HHHH-HHHHHHHHCCCCEEEEEE-EECCHHHHH---HHHH--HHCCCCEEEEE--EC--------CCHHHHH---HHHHH
T ss_conf 5179-999999878998688620-322404899---9999--97389879998--04--------8889999---99999
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 45565531268851786505777748889999987644982999806655532345775446322113564542468999
Q gi|254780434|r 198 TREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIAL 277 (362)
Q Consensus 198 ~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i 277 (362)
++. ..+-+.+-|--+ .+..+.++-+.+.|+|-++.--. + +. +. +|. ..+...+
T Consensus 102 A~~-------~~~~v~iDl~~~---~~~~~~~~~l~~~gvd~~~~H~g---~-----D~---q~---~G~---~~~~~~l 154 (217)
T COG0269 102 AKE-------YGKEVQIDLIGV---WDPEQRAKWLKELGVDQVILHRG---R-----DA---QA---AGK---SWGEDDL 154 (217)
T ss_pred HHH-------CCCEEEEEEECC---CCHHHHHHHHHHHCCCEEEEEEC---C-----CH---HH---HCC---CCCHHHH
T ss_conf 998-------398699985168---99999999999718978999704---3-----47---65---089---9417789
Q ss_pred HHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-CCHH-HHHHHHHHH
Q ss_conf 99997408974899967889999999999839997545278770-6978-999999999
Q gi|254780434|r 278 AKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY-EGIS-LPKRIIQGL 334 (362)
Q Consensus 278 ~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~-~Gp~-~~~~I~~~L 334 (362)
..+++.....+.+--.||| +.+++.++...|++.|=++++..- .+|. ..+.+.+.+
T Consensus 155 ~~ik~~~~~g~~vAVaGGI-~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i 212 (217)
T COG0269 155 EKIKKLSDLGAKVAVAGGI-TPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEI 212 (217)
T ss_pred HHHHHHHCCCCEEEEECCC-CHHHHHHHHCCCCCEEEECCHHCCCCCHHHHHHHHHHHH
T ss_conf 9999862368359986687-887889986489979998822148999799999999986
No 348
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR010210 This entry represents a clade of primarily archaeal sequences related to fructose-bisphosphate aldolase. The members appear to be phospho-2-dehydro-3-deoxyheptonate aldolases. This enzyme is the first step of the chorismate biosynthesis pathway. Evidence for this assignment is based on gene clustering and phylogenetic profiling. A group of species lack members of the three other types of phospho-2-dehydro-3-deoxyheptonate aldolase (represented by IPR006219 from INTERPRO, IPR002480 from INTERPRO and IPR006268 from INTERPRO), and also apparently lack the well-known forms of step 2 (3-dehydroquinate synthase), but contain all other steps of the pathway: Aquifex, Archaeoglobus, Halobacterium, Methanococcus, Methanopyrus and Methanobacterium. In Aquifex, Archaeoglobus, Halobacterium, Methanopyrus and Methanosarcina the genes are clustered with other genes from the chorismate, phenylalanine, tyrosine and tryptophan biosynthesis pathways. In addition, these genes in Archaeoglobus, Halobacterium, and Methanosarcina are adjacent to 3-dehydroquinate synthase (IPR002812 from INTERPRO) which also has the property of having members only in those species which lack steps 1 and 2. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally..
Probab=84.11 E-value=2.6 Score=21.92 Aligned_cols=134 Identities=17% Similarity=0.247 Sum_probs=69.2
Q ss_pred HCCCCCE--EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC---C----CCCHHHHHHHHH
Q ss_conf 0675526--983033365322110000234321111224445565531268851786505---7----777488899999
Q gi|254780434|r 160 FFTIASY--FTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKIS---P----DLSEEELDDIAV 230 (362)
Q Consensus 160 ~~~~aD~--iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLs---P----d~~~~~i~~ia~ 230 (362)
+.-+||+ +=+|+.+-+ +.|.+..+ ..+.+. .-.--+|+++=+= | ..+.+.+..-++
T Consensus 100 i~~GADAVS~HvNvGs~~--------e~d~~~~l-g~vA~~------ad~~GvPlLAMmYaRG~~i~~e~d~~~v~HAaR 164 (259)
T TIGR01949 100 IRLGADAVSIHVNVGSDT--------EADQIEDL-GDVAEI------ADDWGVPLLAMMYARGPRIDDEVDPEVVAHAAR 164 (259)
T ss_pred HHCCCCEEEEEEECCCCC--------CHHHHHHH-HHHHHH------HHHCCCCHHECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 732898679988648987--------38999999-899998------865488420112788688766447678888876
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC--CHHHHHHH---
Q ss_conf 8764498299980665553234577544632211356454246899999997408974899967889--99999999---
Q gi|254780434|r 231 EVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGIS--STKDALDK--- 305 (362)
Q Consensus 231 ~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~--s~~Da~e~--- 305 (362)
...|.|+|=|=.. |+|. .+.-.++-+.+ .+|+|=.||=- |-++.+++
T Consensus 165 lg~ElGADvvK~~--------------------Y~Gd------~~SF~~VV~~c--~~PVvvAGG~k~~s~~efLq~v~D 216 (259)
T TIGR01949 165 LGEELGADVVKVP--------------------YTGD------IDSFEEVVKAC--AVPVVVAGGPKLASDREFLQMVKD 216 (259)
T ss_pred HHHHHCCCEEEEC--------------------CCCC------HHHHHHHHCCC--CCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 5353457766514--------------------3177------46799996217--877787377798874677788999
Q ss_pred -HHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf -983999754527877069789999999999999
Q gi|254780434|r 306 -IMAGANLIQLYSAMIYEGISLPKRIIQGLSDFL 338 (362)
Q Consensus 306 -l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l 338 (362)
+.+||+=|-++.- +|+ -.-+.+|.+.+...-
T Consensus 217 A~~aGAAGvs~GRn-vFq-h~~p~~~~~Av~~iV 248 (259)
T TIGR01949 217 AMEAGAAGVSVGRN-VFQ-HDTPVAITKAVSAIV 248 (259)
T ss_pred HHHHCCCCEECCCC-CCC-CCCHHHHHHHHHHHC
T ss_conf 99818782310563-014-688789999998734
No 349
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=84.01 E-value=3.4 Score=21.14 Aligned_cols=103 Identities=9% Similarity=0.031 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC--
Q ss_conf 748889999987644982999806655532345775446322113564542468999999974089748999678899--
Q gi|254780434|r 221 SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISS-- 298 (362)
Q Consensus 221 ~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s-- 298 (362)
+.+.+.++++.+.++|+|-|.+..|++-. .| ....+.++.+++.++. .+ +++=.=.+
T Consensus 153 ~~~~l~~~~~~~~~~Ga~~I~laDT~G~a----~P---------------~~v~~~i~~v~~~~~~-~~-i~~H~Hnd~G 211 (287)
T PRK05692 153 PPEAVADVAERLFALGCDEISLGDTIGVG----TP---------------GQVRRVLEAVLAEFPA-ER-LAGHFHDTYG 211 (287)
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCCCCC----CH---------------HHHHHHHHHHHHHCCC-CC-EEEEECCCCC
T ss_conf 89999999999985799785447655666----99---------------9999999999986688-72-3567448730
Q ss_pred --HHHHHHHHHCCCCEEEECHHHHCCC-H---HHH-HHHHHHHHHHHHHCCCCC
Q ss_conf --9999999983999754527877069-7---899-999999999999838997
Q gi|254780434|r 299 --TKDALDKIMAGANLIQLYSAMIYEG-I---SLP-KRIIQGLSDFLNKENEVN 345 (362)
Q Consensus 299 --~~Da~e~l~aGAs~VQi~Tali~~G-p---~~~-~~I~~~L~~~l~~~G~~s 345 (362)
-.-++.-+.+||+.|+..=. -.-| | +-. .--.++|-.+|++.||.+
T Consensus 212 ma~AN~laAv~aGa~~vd~tv~-GlGgcPfap~~aGN~~tE~lv~~l~~~G~~T 264 (287)
T PRK05692 212 QALANIYASLEEGITVFDASVG-GLGGCPYAPGATGNVATEDVLYMLHGLGIET 264 (287)
T ss_pred HHHHHHHHHHHHCCCEEEEECC-CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 6999999999809998988554-7779999998767866999999999659966
No 350
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=83.79 E-value=3.4 Score=21.08 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=33.5
Q ss_pred HHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 89999999740-8974899967889999999999839997545278770697899999999999999838
Q gi|254780434|r 274 TIALAKIRQRV-GPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKEN 342 (362)
Q Consensus 274 l~~i~~i~~~~-~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G 342 (362)
..+++++|+.. ..++|||-+.|-.+.++..+.+.+||+-. +.+ |--..++.+-+.+.+++-|
T Consensus 66 ~el~~~ir~~~~~~~~Pii~~T~~~~~~~~~~a~~~Ga~~y------l~K-P~~~~~L~~~i~~vl~r~g 128 (129)
T PRK10610 66 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGY------VVK-PFTAATLEEKLNKIFEKLG 128 (129)
T ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEE------EEC-CCCHHHHHHHHHHHHHHCC
T ss_conf 99999998577778996899988689999999998699889------989-8999999999999997639
No 351
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=83.72 E-value=3.5 Score=21.06 Aligned_cols=81 Identities=21% Similarity=0.352 Sum_probs=51.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHCCCC
Q ss_conf 85178650577774888999998764498299980665553234577544632211356454246-89999999740897
Q gi|254780434|r 209 FVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKS-TIALAKIRQRVGPK 287 (362)
Q Consensus 209 ~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~a-l~~i~~i~~~~~~~ 287 (362)
..+|-|-.. + +++ +..+.++|+|.|-+-|-+ |-. -+++..+++ ..++
T Consensus 183 ~~kIeVEv~---~---~~q-~~~a~~~g~d~I~LDn~s------------------------~~~ik~~v~~~~~-~~~~ 230 (272)
T cd01573 183 EKKIVVEVD---S---LEE-ALAAAEAGADILQLDKFS------------------------PEELAELVPKLRS-LAPP 230 (272)
T ss_pred CCEEEEEEC---C---HHH-HHHHHHCCCCEEEECCCC------------------------HHHHHHHHHHHHC-CCCC
T ss_conf 970899839---9---999-999984699999977999------------------------9999999999744-4887
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCH
Q ss_conf 4899967889999999999839997545278770697
Q gi|254780434|r 288 IAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGI 324 (362)
Q Consensus 288 i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp 324 (362)
+.|-++|||. .+.+.+|-..|+|.+ +.+++ ++.+
T Consensus 231 v~ieaSGgI~-~~ni~~yA~tGvD~I-s~~a~-~~a~ 264 (272)
T cd01573 231 VLLAAAGGIN-IENAAAYAAAGADIL-VTSAP-YYAK 264 (272)
T ss_pred EEEEEECCCC-HHHHHHHHHCCCCEE-ECCHH-HCCC
T ss_conf 6999989999-999999997399999-80843-2776
No 352
>KOG0134 consensus
Probab=83.29 E-value=3.6 Score=20.95 Aligned_cols=177 Identities=16% Similarity=0.092 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHH--CCCCCEEEEE---------CCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 46788776555420--6755269830---------33365322--11000023432111122444556553126885178
Q gi|254780434|r 147 KDFILDYVSGIRLF--FTIASYFTIN---------ISSPNTPG--LRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIF 213 (362)
Q Consensus 147 ~~~~~dy~~~~~~~--~~~aD~iEiN---------iSCPNt~g--~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~ 213 (362)
.+.+.||..-+.++ ..+.|-+||+ +-+|+|-+ -....+-+.=.++...+.++...+.- ... ++
T Consensus 169 k~~V~Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip---~s~-~~ 244 (400)
T KOG0134 169 KTEVVDRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIP---ASR-VF 244 (400)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCC-CE
T ss_conf 89999999999998986388758982354122333316877876443576065401031899999998605---114-34
Q ss_pred EECCC-------CCCHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 65057-------777488899999876449829998066555-3234577544632211356454246899999997408
Q gi|254780434|r 214 LKISP-------DLSEEELDDIAVEVLSHKVEGIIVSNTTLS-RKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVG 285 (362)
Q Consensus 214 vKLsP-------d~~~~~i~~ia~~a~~~g~dGiv~~NT~~~-~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~ 285 (362)
+-++| ..+.++...++......|.|-+-+++-+.. ..+...+.... +.--.--+.+...++....
T Consensus 245 l~~~~~~~fq~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~-------~~~~~~~~~f~e~~r~~~k 317 (400)
T KOG0134 245 LRGSPTNEFQDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQST-------IAREAFFVEFAETIRPVFK 317 (400)
T ss_pred EEECCCHHHHHCCCCCCCHHHHHHHHHHCCCCHHHCCCCHHHHHHHHCCCCCCC-------CCCCCCHHHHHHHHHHHHC
T ss_conf 782583344332665442488899998535430121573043431102301145-------5320201335567778756
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCC-EEEECHHHHCCCHHHHHHHHHHHHH
Q ss_conf 97489996788999999999983999-7545278770697899999999999
Q gi|254780434|r 286 PKIAIIGTGGISSTKDALDKIMAGAN-LIQLYSAMIYEGISLPKRIIQGLSD 336 (362)
Q Consensus 286 ~~i~IIg~GGI~s~~Da~e~l~aGAs-~VQi~Tali~~Gp~~~~~I~~~L~~ 336 (362)
+ .-|-+.||..+.+++.+.+..|+. +|..+..+..+ |.+++++..++..
T Consensus 318 g-t~v~a~g~~~t~~~~~eav~~~~T~~ig~GR~f~an-PDLp~rl~~~~~~ 367 (400)
T KOG0134 318 G-TVVYAGGGGRTREAMVEAVKSGRTDLIGYGRPFLAN-PDLPKRLLNGLPL 367 (400)
T ss_pred C-CEEEECCCCCCHHHHHHHHHCCCCEEEEECCHHCCC-CCHHHHHHHCCCC
T ss_conf 8-689725874578999999855775068734122038-7646898717875
No 353
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=82.76 E-value=3.8 Score=20.81 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=51.5
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 65057777488899999876449829998066555323457754463221135645424689999999740897489996
Q gi|254780434|r 214 LKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGT 293 (362)
Q Consensus 214 vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~ 293 (362)
--.+|--+.+.+.++++.+++.|+|.|.+..+. ++..+ ..+-.+|+.+++.. ++||-==
T Consensus 154 yt~sp~ht~~yy~~~ak~l~~~Gad~I~iKDma----GlL~P---------------~~a~~LV~~lK~~~--~iPI~~H 212 (468)
T PRK12581 154 YTTSPVHTLNYYLSLVKELVEMGADSICIKDMA----GILTP---------------KAAKELVSGIKAMT--NLPLIVH 212 (468)
T ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCC----CCCCH---------------HHHHHHHHHHHHCC--CCCEEEE
T ss_conf 668975549999999999997399989984787----77688---------------99999999998367--9865998
Q ss_pred CCCCCH---HHHHHHHHCCCCEEEECHHHHCCCHH
Q ss_conf 788999---99999998399975452787706978
Q gi|254780434|r 294 GGISST---KDALDKIMAGANLIQLYSAMIYEGIS 325 (362)
Q Consensus 294 GGI~s~---~Da~e~l~aGAs~VQi~Tali~~Gp~ 325 (362)
.==.+| .-.++-+.||||.|..+.+-+-.|..
T Consensus 213 tH~t~Gla~a~~laAieAGaDiVD~Ai~~~s~gtS 247 (468)
T PRK12581 213 THATSGISQMTYLAAVEAGADRIDTALSPFSEGTS 247 (468)
T ss_pred ECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf 25887549999999998199999744645357988
No 354
>pfam04898 Glu_syn_central Glutamate synthase central domain. The central domain of glutamate synthase connects the amino terminal amidotransferase domain with the FMN-binding domain and has an alpha / beta overall topology. This domain appears to be a rudimentary form of the FMN-binding TIM barrel according to SCOP.
Probab=82.61 E-value=3.8 Score=20.78 Aligned_cols=117 Identities=24% Similarity=0.298 Sum_probs=70.1
Q ss_pred HHHHHHHHHH---HHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH--HHHHCCCCE-EEEEECCC
Q ss_conf 8889999987---64498299980665553234577544632211356454246899999--997408974-89996788
Q gi|254780434|r 223 EELDDIAVEV---LSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAK--IRQRVGPKI-AIIGTGGI 296 (362)
Q Consensus 223 ~~i~~ia~~a---~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~--i~~~~~~~i-~IIg~GGI 296 (362)
+.+..+++.+ .+.|+.=++++..-.+......+ + -.++..|.+ +++.+..++ -|+-+|-+
T Consensus 140 ~aL~~l~~eA~~AV~~G~~ilILSDr~~~~~~~~IP------------~--LLAvsaVHh~Lir~glR~~~sIVVeSge~ 205 (288)
T pfam04898 140 AALDRLCEEAEEAVRSGATIIVLSDRNLDEERVAIP------------A--LLAVGAVHHHLIRKGLRTKVSLVVETGEA 205 (288)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC------------H--HHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 999999999999998599889946888886534431------------8--99999999999974865455168873442
Q ss_pred CCHHHHHHHHHCCCCEEEECHHH------HCCC-----------HHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
Q ss_conf 99999999998399975452787------7069-----------789999999999999983899778961697
Q gi|254780434|r 297 SSTKDALDKIMAGANLIQLYSAM------IYEG-----------ISLPKRIIQGLSDFLNKENEVNFENIRGSY 353 (362)
Q Consensus 297 ~s~~Da~e~l~aGAs~VQi~Tal------i~~G-----------p~~~~~I~~~L~~~l~~~G~~si~e~iG~~ 353 (362)
.+-.|..-.+--||++|-=|=++ ..+| -...+-+.+||.+.|-+.|++++.--+|.-
T Consensus 206 re~Hh~A~LiGyGA~AV~PYLa~eti~~~~~~~~~~~~~~~~~~~ny~kai~kGllKImSKMGIStl~SY~Gaq 279 (288)
T pfam04898 206 REVHHFAVLIGYGASAINPYLAYETIRDLHRRGLLKELSLEEAVKNYRKAIEKGLLKIMSKMGISTLQSYRGAQ 279 (288)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHH
T ss_conf 45878788873774001779999999999974898899999999999999984489998301276775155601
No 355
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase; InterPro: IPR005993 Guanosine monophosphate reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences. ; GO: 0003920 GMP reductase activity, 0009117 nucleotide metabolic process.
Probab=82.56 E-value=2.7 Score=21.76 Aligned_cols=38 Identities=29% Similarity=0.442 Sum_probs=31.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCH
Q ss_conf 8974899967889999999999839997545278770697
Q gi|254780434|r 285 GPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGI 324 (362)
Q Consensus 285 ~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp 324 (362)
+-+=.|+.-||..++-|+.+.+.+|||.|+++. ++.|.
T Consensus 210 Gl~G~~~sdGGC~~PGdvakaf~~gadfvm~GG--~~~Gh 247 (343)
T TIGR01305 210 GLKGHIVSDGGCTTPGDVAKAFGAGADFVMLGG--LLAGH 247 (343)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHCCCCEEEECC--CCCCC
T ss_conf 755248726888981267887734777676522--01153
No 356
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=82.52 E-value=3.8 Score=20.75 Aligned_cols=45 Identities=20% Similarity=0.368 Sum_probs=32.9
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 999999974089748999678899999999998399975452787706
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYE 322 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~ 322 (362)
..+..+++.. .+++|--.|||. .+-+.+.+.+|||.|-++++. ++
T Consensus 319 ~~l~~i~~~~-~~~~VAVAGGI~-~et~~~~~~~gadIvIVG~aI-T~ 363 (392)
T PRK13307 319 GNIPEIKKAA-GKILVAVAGGVR-VEKVEEALKAGADILVVGRAI-TK 363 (392)
T ss_pred HHHHHHHHHC-CCEEEEEECCCC-HHHHHHHHHCCCCEEEECCHH-CC
T ss_conf 5699999742-680599977888-888999984699899989121-37
No 357
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=82.38 E-value=3.9 Score=20.72 Aligned_cols=118 Identities=14% Similarity=0.268 Sum_probs=71.8
Q ss_pred CHHHHHHHHHH-HHHCCCCCCEEECCCCC-HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 77889998764-10001210001104542-46788776555420675526983033365322110000234321111224
Q gi|254780434|r 119 GYHTVFSRLSK-IQPTSPIGINLGANKDS-KDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVM 196 (362)
Q Consensus 119 G~~~~~~~l~~-~~~~~pi~vsI~~~~~s-~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~ 196 (362)
.++.+.+.... +.....||.|||.-.+- +|.+-||..-..+=. -=-+|+.+-+-|-+-++.......+.++.+++.
T Consensus 98 pvevLre~ye~aL~~~~VVGLsIgTRPDClpd~VldlL~e~~~r~--~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~ 175 (312)
T COG1242 98 PVEVLREMYEQALSEAGVVGLSIGTRPDCLPDDVLDLLAEYNKRY--EVWVELGLQTAHDKTLKRINRGHDFACYVDAVK 175 (312)
T ss_pred CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHE--EEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 599999999997275880477505899888189999999986445--788774530555899998762454499999999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 4455655312688517865057777488899999876449829998
Q gi|254780434|r 197 QTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIV 242 (362)
Q Consensus 197 ~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~ 242 (362)
..+..- ++-.+ -+++-||- .+.++..+-++.+.+.++|||-+
T Consensus 176 r~rkrg-Ikvc~--HiI~GLPg-E~~~~mleTak~v~~~~v~GIKl 217 (312)
T COG1242 176 RLRKRG-IKVCT--HLINGLPG-ETRDEMLETAKIVAELGVDGIKL 217 (312)
T ss_pred HHHHCC-CEEEE--EEEECCCC-CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999749-74988--88407988-88899999999998668753888
No 358
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=82.26 E-value=3.9 Score=20.69 Aligned_cols=171 Identities=14% Similarity=0.186 Sum_probs=87.8
Q ss_pred CCCCCCHHHHHHHHHHHH--HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCCCCCHHHHHH
Q ss_conf 247777788999876410--001210001104542467887765554206755269830-33365322110000234321
Q gi|254780434|r 114 GFNNAGYHTVFSRLSKIQ--PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTIN-ISSPNTPGLRSLQKKKNLER 190 (362)
Q Consensus 114 Gl~N~G~~~~~~~l~~~~--~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiN-iSCPNt~g~~~~~~~~~l~~ 190 (362)
+|+-.|.+.-++-|++.+ .+.|+..-|+-. +-++.+.+++|.+-|- +-|-|| +
T Consensus 60 sf~G~G~e~gL~~l~~vk~~~glpi~TeV~~~-----------~~~e~~~~~vDilQIgAfl~rqt-------------d 115 (264)
T PRK05198 60 SYRGPGLEEGLKILAEVKETFGVPVLTDVHEP-----------EQAAPVAEVVDVLQIPAFLCRQT-------------D 115 (264)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCEEECCH-----------HHHHHHHHHHHHHEECHHHHCCH-------------H
T ss_conf 76786688898999999998499640146789-----------99999983402320123540347-------------9
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11122444556553126885178650577774888999998764498299980665553234577544632211356454
Q gi|254780434|r 191 LLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLF 270 (362)
Q Consensus 191 ~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~ 270 (362)
++.++ ..+.+||.+|=+-.++..++...++.+.+.|..-|++|-. +. . . |+.--
T Consensus 116 Ll~a~----------a~t~kpV~lKkgqf~sp~~~~~a~eki~~~Gn~~v~lcER-----G~-~------f-gY~~l--- 169 (264)
T PRK05198 116 LLVAA----------AKTGKVVNIKKGQFLAPWDMKNVVDKVRETGNDKIILCER-----GT-S------F-GYNNL--- 169 (264)
T ss_pred HHHHH----------HHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEC-----CC-C------C-CCCCC---
T ss_conf 99999----------8649908842556589999999999999749984999848-----99-8------6-88876---
Q ss_pred HHHHHHHHHHHHHCCCCEEEEE-----------ECCCCCH------HHHHHHHHCCCCEEEECHH-----HHCCC-----
Q ss_conf 2468999999974089748999-----------6788999------9999999839997545278-----77069-----
Q gi|254780434|r 271 LKSTIALAKIRQRVGPKIAIIG-----------TGGISST------KDALDKIMAGANLIQLYSA-----MIYEG----- 323 (362)
Q Consensus 271 ~~al~~i~~i~~~~~~~i~IIg-----------~GGI~s~------~Da~e~l~aGAs~VQi~Ta-----li~~G----- 323 (362)
-.-.+.|..+++ + ..|||- .|+.+.| .=+..-+.+|||-+.+=|- ..-.|
T Consensus 170 vvD~~~i~~lk~-~--~~PVi~DpSHs~q~p~~~~~~sgG~r~~v~~la~aaia~G~dGl~iE~HpdP~~AlsD~~q~l~ 246 (264)
T PRK05198 170 VVDMRGLPIMRE-T--GAPVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIETHPDPDNALSDGPNALP 246 (264)
T ss_pred CHHHHHHHHHHH-C--CCCCEECCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 312677899985-2--8982665732001678877876551777999999999829998999836880217886001579
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 78999999999999
Q gi|254780434|r 324 ISLPKRIIQGLSDF 337 (362)
Q Consensus 324 p~~~~~I~~~L~~~ 337 (362)
|.-+.++.+.|++.
T Consensus 247 ~~~l~~ll~~l~~i 260 (264)
T PRK05198 247 LDKLEPLLEQLKAI 260 (264)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 359
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=81.47 E-value=4.2 Score=20.50 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=16.1
Q ss_pred CCEEEEECC--CCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 851786505--777748889999987644982999
Q gi|254780434|r 209 FVPIFLKIS--PDLSEEELDDIAVEVLSHKVEGII 241 (362)
Q Consensus 209 ~~Pi~vKLs--Pd~~~~~i~~ia~~a~~~g~dGiv 241 (362)
.+|+.|-+- |.-+++++..+.+.+.+.|++..+
T Consensus 371 g~pvVVAIN~F~~Dt~~Ei~~i~~~~~~~g~~~~~ 405 (556)
T PRK13505 371 GVPVVVAINKFVTDTDAEIAAVKELCEELGVEVAL 405 (556)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 99769995478998899999999999986998999
No 360
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=80.88 E-value=4.4 Score=20.37 Aligned_cols=79 Identities=18% Similarity=0.044 Sum_probs=40.7
Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHCCCCCEEEEECCCCCCH
Q ss_conf 206755269830333653221100002343211112244----------------4556553126885178650577774
Q gi|254780434|r 159 LFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQ----------------TREEEKIKTGKFVPIFLKISPDLSE 222 (362)
Q Consensus 159 ~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~----------------~~~~~~~~~~~~~Pi~vKLsPd~~~ 222 (362)
+...+|+.+.+|+.-|-..+ ...+.+++..+.. .......+...-+||+=-++---..
T Consensus 394 Qv~~GA~vLDVNv~~~~~D~------~~~m~~~~~~l~~~~~i~~vPl~IDSs~~~viEaaLk~~~Gk~iiNSinlkeGe 467 (1229)
T PRK09490 394 QVENGAQIIDINMDEGMLDS------EAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGE 467 (1229)
T ss_pred HHHCCCCEEEECCCCCCCCH------HHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCH
T ss_conf 99758978874278765346------999999999984366547788468488889999999863994567742101155
Q ss_pred HHHHHHHHHHHHCCCCEEEEE
Q ss_conf 888999998764498299980
Q gi|254780434|r 223 EELDDIAVEVLSHKVEGIIVS 243 (362)
Q Consensus 223 ~~i~~ia~~a~~~g~dGiv~~ 243 (362)
+.+.+.+..+.++|+.-|+++
T Consensus 468 e~~~~~~~l~kkYGAavV~L~ 488 (1229)
T PRK09490 468 EKFIHHARLVRRYGAAVVVMA 488 (1229)
T ss_pred HHHHHHHHHHHHHCCEEEEEE
T ss_conf 879998799997297489984
No 361
>TIGR00419 tim triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase () (TIM) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism . The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder .; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process.
Probab=79.74 E-value=1.8 Score=23.01 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=39.3
Q ss_pred HHHH-HHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 9999-99740897489996788999999999983999754527877
Q gi|254780434|r 276 ALAK-IRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMI 320 (362)
Q Consensus 276 ~i~~-i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali 320 (362)
++++ +.+.+.+++-|+..|||++++|+..++-.||+=|=+++|.+
T Consensus 196 ~l~~na~~evn~~V~vlcGagi~~~~d~~~A~~lg~eGvLlasg~~ 241 (244)
T TIGR00419 196 HLKKNAVKEVNESVRVLCGAGITTGEDAELAAQLGAEGVLLASGVL 241 (244)
T ss_pred HHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEECCEEE
T ss_conf 8863045012664078876861658899997369977688725564
No 362
>TIGR02814 pfaD_fam PfaD family protein; InterPro: IPR014179 The protein PfaD is part of a four-gene locus, similar to polyketide biosynthesis systems, which is responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the entry are found in loci presumed to act in polyketide biosyntheses per se..
Probab=79.30 E-value=4.9 Score=20.04 Aligned_cols=50 Identities=24% Similarity=0.341 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEE---EEE-CCCCCHHHHHHHHHCCCCEEEECH
Q ss_conf 45424689999999740897489---996-788999999999983999754527
Q gi|254780434|r 268 PLFLKSTIALAKIRQRVGPKIAI---IGT-GGISSTKDALDKIMAGANLIQLYS 317 (362)
Q Consensus 268 ~i~~~al~~i~~i~~~~~~~i~I---Ig~-GGI~s~~Da~e~l~aGAs~VQi~T 317 (362)
.|.|.=+++=-.+.++++=+-|| ||+ |||-|++-|..-++.|||.|=-+|
T Consensus 203 vLLP~i~rLRD~~~~~~gY~~~irvRvGaAGGiGtPeAvaAAF~LGA~FiVTGS 256 (449)
T TIGR02814 203 VLLPAIIRLRDTLMRKYGYRKPIRVRVGAAGGIGTPEAVAAAFMLGADFIVTGS 256 (449)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEECCC
T ss_conf 998999999999999827898743787357777727999999733742574186
No 363
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=79.05 E-value=5 Score=19.98 Aligned_cols=158 Identities=18% Similarity=0.203 Sum_probs=77.3
Q ss_pred HHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99987641000121000110454246788776555420675526983033365322110000234321111224445565
Q gi|254780434|r 123 VFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEE 202 (362)
Q Consensus 123 ~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~ 202 (362)
++++|++... +|+.-. +..|-++...-+++...+ -.+|++.++-+- ..+.+....+.. ..
T Consensus 54 ~~~el~~~~~--~VflDl-K~~DIpnT~~~~~~~~~~--~g~d~vtvH~~~----------G~~~~~~~~e~~----~~- 113 (240)
T COG0284 54 ILEELKARGK--KVFLDL-KLADIPNTVALAAKAAAD--LGADAVTVHAFG----------GFDMLRAAKEAL----EA- 113 (240)
T ss_pred HHHHHHHHCC--CEEEEE-ECCCCHHHHHHHHHHHHH--CCCCEEEEECCC----------CHHHHHHHHHHH----HH-
T ss_conf 9999997077--358741-005636799999998654--378489970767----------887999999988----64-
Q ss_pred HHHCCCCCEE-EEECC-CCC-----------CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5312688517-86505-777-----------7488899999876449829998066555323457754463221135645
Q gi|254780434|r 203 KIKTGKFVPI-FLKIS-PDL-----------SEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPL 269 (362)
Q Consensus 203 ~~~~~~~~Pi-~vKLs-Pd~-----------~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i 269 (362)
..+ ..+ ...|+ +.. ..+.+..+++.+.++|.||+++.
T Consensus 114 ---~~~-~vl~vT~lts~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~-------------------------- 163 (240)
T COG0284 114 ---GGP-FVLAVTSLTSMGELQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCS-------------------------- 163 (240)
T ss_pred ---CCC-EEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEECC--------------------------
T ss_conf ---386-69999957980166665412242089999999987243783578728--------------------------
Q ss_pred CHHHHHHHHHHHHHCCCCEEEE----EE-------CCCCCHHHHHHHHHCCCCEEEECHHHHCCC-H-HHHHHHHHHHHH
Q ss_conf 4246899999997408974899----96-------788999999999983999754527877069-7-899999999999
Q gi|254780434|r 270 FLKSTIALAKIRQRVGPKIAII----GT-------GGISSTKDALDKIMAGANLIQLYSAMIYEG-I-SLPKRIIQGLSD 336 (362)
Q Consensus 270 ~~~al~~i~~i~~~~~~~i~II----g~-------GGI~s~~Da~e~l~aGAs~VQi~Tali~~G-p-~~~~~I~~~L~~ 336 (362)
+ .-+..+|+..+++++|+ +. +++.++.+| +.+|||.+=++.+....+ | ...++|++++..
T Consensus 164 -~---~e~~~ir~~~g~~~~iltPGIg~~~~~gdQ~~~~t~~~A---~~~Gad~ivVGR~I~~a~~p~~a~~~i~~~~~~ 236 (240)
T COG0284 164 -A---EEVAAIREILGPDFLILTPGIGAGSQGGDQGRVMTPGEA---VRAGADYIVVGRPITQAGDPVAAARAIAREIAR 236 (240)
T ss_pred -H---HHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHH---HHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHH
T ss_conf -8---888899985388967988872767677783344498999---755897899771232389869999999999987
Q ss_pred H
Q ss_conf 9
Q gi|254780434|r 337 F 337 (362)
Q Consensus 337 ~ 337 (362)
-
T Consensus 237 ~ 237 (240)
T COG0284 237 E 237 (240)
T ss_pred H
T ss_conf 6
No 364
>KOG0623 consensus
Probab=78.70 E-value=5.1 Score=19.92 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=19.4
Q ss_pred EEEEEECCCCCHHH-----------HHHHHHCCCCEEEECHHHHCC
Q ss_conf 48999678899999-----------999998399975452787706
Q gi|254780434|r 288 IAIIGTGGISSTKD-----------ALDKIMAGANLIQLYSAMIYE 322 (362)
Q Consensus 288 i~IIg~GGI~s~~D-----------a~e~l~aGAs~VQi~Tali~~ 322 (362)
+|+--.|||.+-.| |.+|++.|||-|.++|-.+|.
T Consensus 317 VPLTVGGGIrD~~D~dGt~~palEVA~~YFRSGADKvSIGsDAVyA 362 (541)
T KOG0623 317 VPLTVGGGIRDFTDADGTYYPALEVAAEYFRSGADKVSIGSDAVYA 362 (541)
T ss_pred EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf 8776357633345688767204899999986478613105067788
No 365
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional
Probab=78.67 E-value=4.3 Score=20.45 Aligned_cols=35 Identities=26% Similarity=0.642 Sum_probs=24.8
Q ss_pred HHHHHHHCCCCEEEEEECCCCCH----------HHHHHHHHCCCC
Q ss_conf 99999740897489996788999----------999999983999
Q gi|254780434|r 277 LAKIRQRVGPKIAIIGTGGISST----------KDALDKIMAGAN 311 (362)
Q Consensus 277 i~~i~~~~~~~i~IIg~GGI~s~----------~Da~e~l~aGAs 311 (362)
|.+.-+.++.++.|||+||++.. .++.|++..|.+
T Consensus 158 i~~ai~~~d~RV~vigtGGLSH~PpvP~l~~a~~~~~~~lv~G~~ 202 (313)
T PRK13370 158 VGRFLATLDKRVLVIGSGGLSHDPPVPELATADPEVRDRLIAGRN 202 (313)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 999998169818999578556899986424587788877742789
No 366
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=78.12 E-value=5.3 Score=19.80 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 77488899999876449829998
Q gi|254780434|r 220 LSEEELDDIAVEVLSHKVEGIIV 242 (362)
Q Consensus 220 ~~~~~i~~ia~~a~~~g~dGiv~ 242 (362)
.+..++.+.++.+.+.|+..|.+
T Consensus 89 ~n~~~i~~~l~~~~~~Gi~~ila 111 (291)
T COG0685 89 RNRIEIISILKGAAALGIRNILA 111 (291)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 89899999999999818855999
No 367
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=77.88 E-value=2.3 Score=22.21 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=9.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 7865057777488899999876
Q gi|254780434|r 212 IFLKISPDLSEEELDDIAVEVL 233 (362)
Q Consensus 212 i~vKLsPd~~~~~i~~ia~~a~ 233 (362)
+-.||.|+ +.+++.+-.....
T Consensus 176 v~f~L~~~-~~~~I~~~~~~ir 196 (291)
T COG0812 176 VEFKLTKG-DPEDILAAMCAIR 196 (291)
T ss_pred EEEEECCC-CHHHHHHHHHHHH
T ss_conf 99987789-9899999999999
No 368
>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate. 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate, yielding the product 2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is an essential enzyme in the beta-phenylpropionic degradation pathway, in which beta-phenylpropionic is first hydrolyzed to produce 2,3-dihydroxyphenylpropionate. The enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the ca
Probab=77.81 E-value=4.9 Score=20.03 Aligned_cols=35 Identities=20% Similarity=0.629 Sum_probs=23.7
Q ss_pred HHHHHHHCCCCEEEEEECCCCCH----------HHHHHHHHCCCC
Q ss_conf 99999740897489996788999----------999999983999
Q gi|254780434|r 277 LAKIRQRVGPKIAIIGTGGISST----------KDALDKIMAGAN 311 (362)
Q Consensus 277 i~~i~~~~~~~i~IIg~GGI~s~----------~Da~e~l~aGAs 311 (362)
|.+.-+.++.++.|||+||++.. .++.+++..|.+
T Consensus 158 ig~ai~~~deRVavigtGGLSH~Pp~P~~~~~~~~~~~~li~g~~ 202 (310)
T cd07365 158 VGRFLAKLDKRVLFLGSGGLSHDPPVPQLATAPPEVAERLIAGRN 202 (310)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 999998279818999578556899986535687677877742689
No 369
>PRK07094 biotin synthase; Provisional
Probab=76.83 E-value=5.8 Score=19.56 Aligned_cols=122 Identities=17% Similarity=0.201 Sum_probs=69.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78650577774888999998764498299980665553234577544632211356454246899999997408974899
Q gi|254780434|r 212 IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAII 291 (362)
Q Consensus 212 i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~II 291 (362)
+++-+ |..+.++..+.+..+.+.++|-+ -+|..+..++++-..... +. ....+++++-+|=.. ++.-|=
T Consensus 185 ~iiGl-pGET~edr~~~l~~LreL~~~~v-~i~~fiP~~gTPl~~~~~------~~--~~~~lr~iAl~Rli~-P~a~Ip 253 (323)
T PRK07094 185 FMVGL-PGQTLEDLADDILFLKELDLDMI-GIGPFIPHPDTPLADEKG------GS--LELTLKVLALARLLL-PDANIP 253 (323)
T ss_pred EEECC-CCCCHHHHHHHHHHHHHCCCCEE-CCCCCCCCCCCCCCCCCC------CC--HHHHHHHHHHHHHHC-CCCCCC
T ss_conf 27798-99999999999999983799886-772551799999889999------79--999999999999978-766574
Q ss_pred EEC--CCCCHHHHHHHHHCCCCEEEEC-HHH-------HCCCHHH----HHHHHHHHHHHHHHCCCC
Q ss_conf 967--8899999999998399975452-787-------7069789----999999999999983899
Q gi|254780434|r 292 GTG--GISSTKDALDKIMAGANLIQLY-SAM-------IYEGISL----PKRIIQGLSDFLNKENEV 344 (362)
Q Consensus 292 g~G--GI~s~~Da~e~l~aGAs~VQi~-Tal-------i~~Gp~~----~~~I~~~L~~~l~~~G~~ 344 (362)
++. |..+.+-...-+++||+.|+-- |-- +|.|--. ..+..+.|.+.++..|+.
T Consensus 254 attal~~l~~~g~~~~l~aGANvvmp~~tp~~~r~~y~ly~~k~~~~~~~~~~~~~~~~~~~~~g~~ 320 (323)
T PRK07094 254 ATTALGTLNPDGREKGLKAGANVVMPNLTPTEYRKLYQLYPGKICTGEEAAECRECIEARIESIGRT 320 (323)
T ss_pred CCCCHHHCCHHHHHHHHHCCCCEECCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 4465322498899999876886647889946762575267998768878999999999999972864
No 370
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=76.31 E-value=6 Score=19.47 Aligned_cols=42 Identities=21% Similarity=0.359 Sum_probs=29.3
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf 9999997408974899967889999999999839997545278
Q gi|254780434|r 276 ALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSA 318 (362)
Q Consensus 276 ~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Ta 318 (362)
.+..+.+..+.+..|+ +..+.+.+++.+...+|||.+-+--.
T Consensus 146 ~~~~~~~~~~~~tkiL-~AS~R~~~~v~~a~~~G~d~iTip~~ 187 (211)
T cd00956 146 EIRTIFDNYGFDTKIL-AASIRNPQHVIEAALAGADAITLPPD 187 (211)
T ss_pred HHHHHHHHCCCCEEEE-EEECCCHHHHHHHHHCCCCEEECCHH
T ss_conf 9999999829982688-52048899999999869999984999
No 371
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=76.18 E-value=6 Score=19.45 Aligned_cols=76 Identities=12% Similarity=0.153 Sum_probs=47.3
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 65057777488899999876449829998066555323457754463221135645424689999999740897489996
Q gi|254780434|r 214 LKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGT 293 (362)
Q Consensus 214 vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~ 293 (362)
+-|..|.+. +++++.+.+.++|.|.++-+... . .+...+++..+++.-.++++|+..
T Consensus 31 ~~lG~~vp~---e~~v~~a~~~~~d~I~lS~~~~~-------------------~-~~~~~~~i~~l~~~g~~~i~v~vG 87 (119)
T cd02067 31 IDLGVDVPP---EEIVEAAKEEDADAIGLSGLLTT-------------------H-MTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred EECCCCCCH---HHHHHHHHHCCCCEEEEECCCCC-------------------C-HHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 989999999---99999999709999999622024-------------------2-689999999999769999859998
Q ss_pred CCCCCHHHHHHHHHCCCCEE
Q ss_conf 78899999999998399975
Q gi|254780434|r 294 GGISSTKDALDKIMAGANLI 313 (362)
Q Consensus 294 GGI~s~~Da~e~l~aGAs~V 313 (362)
|++.+ +|....-..|||.+
T Consensus 88 G~~~~-~~~~~~~~~Gad~~ 106 (119)
T cd02067 88 GAIVT-RDFKFLKEIGVDAY 106 (119)
T ss_pred CCCCC-HHHHHHHHCCCCEE
T ss_conf 99897-43999998699799
No 372
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=75.76 E-value=6.1 Score=19.38 Aligned_cols=209 Identities=14% Similarity=0.138 Sum_probs=98.6
Q ss_pred CCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCC---HHHHHHHHHHHH-
Q ss_conf 9748534688867798887403675241020013687899886268842555410000247777---788999876410-
Q gi|254780434|r 56 NPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAG---YHTVFSRLSKIQ- 131 (362)
Q Consensus 56 nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G---~~~~~~~l~~~~- 131 (362)
.|+.+..-+|. -.-+.+...||-++-+.+-... .+.|+|.-+ .+.+.+.+++..
T Consensus 9 ~~l~~p~v~D~--~SAr~~~~~Gf~ai~~ss~~~a--------------------~s~G~pD~~~~~~~e~~~~~~~I~~ 66 (243)
T cd00377 9 GPLVLPGAWDA--LSARLAERAGFKAIYTSGAGVA--------------------ASLGLPDGGLLTLDEVLAAVRRIAR 66 (243)
T ss_pred CCEEECCCCCH--HHHHHHHHCCCCEEEECHHHHH--------------------HHCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 97895478789--9999999859999982489999--------------------9759998787987899999999996
Q ss_pred -HCCCCCCEEECCCCCHHHHHHHHHHHHHHC-CCCCEEEE-----ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf -001210001104542467887765554206-75526983-----03336532211000023432111122444556553
Q gi|254780434|r 132 -PTSPIGINLGANKDSKDFILDYVSGIRLFF-TIASYFTI-----NISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKI 204 (362)
Q Consensus 132 -~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~-~~aD~iEi-----NiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~ 204 (362)
.+.||++-+-...-.. .+..+.++++. .++..+-| .-.|.+..+ +.+.+.+..-.-+.+.+..+...
T Consensus 67 a~~lPv~aD~d~GyG~~---~~v~~tv~~~~~aG~agi~IED~~~~k~~~~~~~-~~l~~~~e~~~ki~aa~~a~~~~-- 140 (243)
T cd00377 67 AVDLPVIADADTGYGNA---LNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGG-KVLVPIEEFVAKIKAARDARDDL-- 140 (243)
T ss_pred HCCCCEEEECCCCCCCH---HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHC--
T ss_conf 16998899876677867---9999999999974996798658788765666576-32306999999999999988636--
Q ss_pred HCCCCCEEEEEC----CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 126885178650----5777748889999987644982999806655532345775446322113564542468999999
Q gi|254780434|r 205 KTGKFVPIFLKI----SPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKI 280 (362)
Q Consensus 205 ~~~~~~Pi~vKL----sPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i 280 (362)
...-|.+.. ......++..+-+++-.++|+|++-+-.. .+...++++
T Consensus 141 ---~d~~I~ARTDa~~~~~~~~~eai~R~~aY~~AGAD~ifi~~~--------------------------~~~~ei~~~ 191 (243)
T cd00377 141 ---PDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGL--------------------------KDPEEIRAF 191 (243)
T ss_pred ---CCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCC--------------------------CCHHHHHHH
T ss_conf ---881687542345405788999999999999829989994589--------------------------999999999
Q ss_pred HHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC
Q ss_conf 974089748999678899999999998399975452787706
Q gi|254780434|r 281 RQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYE 322 (362)
Q Consensus 281 ~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~ 322 (362)
.+..+.-+-+..+.|= ..-+..++-.+|.+.|-.+..+++.
T Consensus 192 ~~~~~~Pl~~~~~~~~-~~~~~~eL~~lGv~~v~~g~~~~~a 232 (243)
T cd00377 192 AEAPDVPLNVNMTPGG-NLLTVAELAELGVRRVSYGLALLRA 232 (243)
T ss_pred HHHCCCCEEEEECCCC-CCCCHHHHHHCCCCEEEECHHHHHH
T ss_conf 9736999899957889-9999999998699699985199999
No 373
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=75.61 E-value=6.2 Score=19.35 Aligned_cols=121 Identities=11% Similarity=0.003 Sum_probs=67.7
Q ss_pred CCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHC-CCCCEEEE--ECCCCCCCCCCCCCC
Q ss_conf 410000247777788999876410001210001104542467887765554206-75526983--033365322110000
Q gi|254780434|r 108 AIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFF-TIASYFTI--NISSPNTPGLRSLQK 184 (362)
Q Consensus 108 ~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~-~~aD~iEi--NiSCPNt~g~~~~~~ 184 (362)
+++.+.-=|.-|++-+.+.+.. .+.|+..+|-+.+. .-..+++.+++.+++ .+.|++-= |+..|.-
T Consensus 116 ~~~~~f~GP~fGi~G~R~~~gv--~~RPLlgtiiKP~v-Gls~~~~a~~~~e~~~GGvDfiKDDE~l~~q~~-------- 184 (411)
T PRK09549 116 ELKKHFPGPKFGIDGIRNLLQV--HDRPLLMSIFKGMI-GRDIGYLKEQLRDQAIGGVDIVKDDEILFENAL-------- 184 (411)
T ss_pred HHHHCCCCCCCCHHHHHHHHCC--CCCCEEEEEECCCC-CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--------
T ss_conf 9995389998752231986489--88860577626866-899899999999986458651458645679777--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 2343211112244455655312688517865057777488899999876449829998
Q gi|254780434|r 185 KKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIV 242 (362)
Q Consensus 185 ~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~ 242 (362)
..+.+-+.++.+.......+...++=..+-++- +..++.+-++.+.+.|++.+-+
T Consensus 185 -~p~~eRv~~~~~ai~~a~~eTG~~~~ya~NiT~--~~~em~~ra~~a~e~G~~~vmv 239 (411)
T PRK09549 185 -TPLEKRIVSGKEVLQEVYETTGHKTLYAVNLTG--RTFELKENAKRAVELGADALLF 239 (411)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC--CHHHHHHHHHHHHHCCCCEEEE
T ss_conf -889999999999999999985886659986588--9799999999999859988999
No 374
>PRK01362 putative translaldolase; Provisional
Probab=75.50 E-value=6.2 Score=19.33 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=28.7
Q ss_pred HHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf 999997408974899967889999999999839997545278
Q gi|254780434|r 277 LAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSA 318 (362)
Q Consensus 277 i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Ta 318 (362)
+..+.+..+-+..|+ +..+.+.+++.+.+.+||+.|-+--.
T Consensus 147 i~~~~~~~~~~tkIL-~AS~r~~~~i~~a~~~G~~~iTvp~~ 187 (214)
T PRK01362 147 IREIYDNYGFETEII-AASVRHPMHVLEAALIGADIATIPYK 187 (214)
T ss_pred HHHHHHHCCCCCEEE-EEECCCHHHHHHHHHCCCCEEECCHH
T ss_conf 999999639981375-20038899999999869999983999
No 375
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=75.48 E-value=6.2 Score=19.33 Aligned_cols=245 Identities=11% Similarity=0.061 Sum_probs=117.7
Q ss_pred HHHHHHHCCCCEEECCCCCCCCCCCCCCCCEE--EEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCH
Q ss_conf 98887403675241020013687899886268--8425554100002477777889998764100012100011045424
Q gi|254780434|r 70 VPIELLKLGFGFVEIGTVTPHPQAGNPRPRVF--RLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSK 147 (362)
Q Consensus 70 ~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~--r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~ 147 (362)
.+..+...=||.+-++ + + .|+. ++|+ +++.+..=|.-|++-+.+.+.. .+.|+.-+|-+.+. .
T Consensus 87 ~lp~ll~~vfGn~sl~-----~---~--lRL~Dl~lP~--~~~~~f~GP~fGi~G~R~~~gv--~~RPLlgtiiKP~~-G 151 (407)
T TIGR03332 87 DLPALLTTTFGKLSLD-----G---E--VKLIDLEFSD--EFKRHFPGPKFGIDGIRKLLGV--HERPLLMSIFKGMI-G 151 (407)
T ss_pred CHHHHHHHHHHHHHHC-----C---C--EEEEEECCCH--HHHHCCCCCCCCHHHHHHHHCC--CCCCEEEEEECCCC-C
T ss_conf 5899999864114113-----7---5--0587765899--9995389998633889997579--98874677626755-7
Q ss_pred HHHHHHHHHHHHHC-CCCCEEEE--ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
Q ss_conf 67887765554206-75526983--0333653221100002343211112244455655312688517865057777488
Q gi|254780434|r 148 DFILDYVSGIRLFF-TIASYFTI--NISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEE 224 (362)
Q Consensus 148 ~~~~dy~~~~~~~~-~~aD~iEi--NiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~ 224 (362)
-..+++.+++.++. .+.|++-= |+..|.. ..+++-+.++.+.......+...++=..+-++- +..+
T Consensus 152 ls~~~~a~~~~e~~~GG~DfIKDDE~l~~q~~---------~p~~eRv~~~~~ai~~a~~eTG~~~~ya~NiT~--~~~e 220 (407)
T TIGR03332 152 RDLGYLKEQLRQQALGGVDLVKDDEILFETGL---------APFEKRITEGKEVLQEVYEQTGHKTLYAVNLTG--RTFD 220 (407)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---------CCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC--CHHH
T ss_conf 99899999999996057762427555679878---------989999999999999999985985469985388--9899
Q ss_pred HHHHHHHHHHCCCCEEEEE-CCC-------CCC-CC--CCCCCCCCCCCCCCCCCCCHH---------------------
Q ss_conf 8999998764498299980-665-------553-23--457754463221135645424---------------------
Q gi|254780434|r 225 LDDIAVEVLSHKVEGIIVS-NTT-------LSR-KG--VQCSDNHEQDGGLSGSPLFLK--------------------- 272 (362)
Q Consensus 225 i~~ia~~a~~~g~dGiv~~-NT~-------~~~-~~--~~~~~~~~~~GGlSG~~i~~~--------------------- 272 (362)
+.+-++.+.+.|+..+-+. +|. ..+ +. +.........|-++..+-+-+
T Consensus 221 m~~ra~~a~e~G~~~vmv~~~~~G~~a~~~L~~~~~~~lpI~aHra~~ga~~r~~~~Gis~~~~l~Kl~RLaGaD~~~~~ 300 (407)
T TIGR03332 221 LKDKAKRAAELGADVLLFNVFAYGLDVLQSLAEDDEIPVPIMAHPAVSGAYTSSPFYGVSHSLLLGKLLRYAGADFSLFP 300 (407)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEECC
T ss_conf 99999999975998899957655599999998478988438873144336632777774299999999998198977625
Q ss_pred ------------HHHHHHHHHHHC---CCCEEEEEECCCCCHHHHHHHHHCCCCEEE-ECHHHHCC--CHH-HHHHHHHH
Q ss_conf ------------689999999740---897489996788999999999983999754-52787706--978-99999999
Q gi|254780434|r 273 ------------STIALAKIRQRV---GPKIAIIGTGGISSTKDALDKIMAGANLIQ-LYSAMIYE--GIS-LPKRIIQG 333 (362)
Q Consensus 273 ------------al~~i~~i~~~~---~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQ-i~Tali~~--Gp~-~~~~I~~~ 333 (362)
.+.....+++.. .+-+|+ .+||+.-+.=-.-+=..|-|.|- .+.+.+=+ ||. =++-+...
T Consensus 301 ~~~Gk~~~~~~~~~~~~~~~~~~~~~~k~~~Pv-~SgGihpg~~p~~~~~~G~D~il~~GGGi~gHP~G~aAGa~A~RqA 379 (407)
T TIGR03332 301 SPYGSVALEKEDALAISKELTEDDVPFKKTFAV-PSAGIHPGMVPLIIRDFGIDHIINAGGGIHGHPNGAQGGGRAFRAA 379 (407)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEE-CCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 775774788899999999973666555775341-6898888888999996398179976876766898737879999999
Q ss_pred HHHHHHHC
Q ss_conf 99999983
Q gi|254780434|r 334 LSDFLNKE 341 (362)
Q Consensus 334 L~~~l~~~ 341 (362)
+..+++..
T Consensus 380 ~eA~~~g~ 387 (407)
T TIGR03332 380 IDAVLEAK 387 (407)
T ss_pred HHHHHHCC
T ss_conf 99998199
No 376
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=74.92 E-value=6.5 Score=19.24 Aligned_cols=156 Identities=18% Similarity=0.183 Sum_probs=81.8
Q ss_pred CEEEECCEECCC--CEEECCCCC-CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECC---CCCEEECCCCCC
Q ss_conf 116888733599--748534688-86779888740367524102001368789988626884255---541000024777
Q gi|254780434|r 45 LNTKVAGISLSN--PLGMAAGYD-KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKD---RAIINKLGFNNA 118 (362)
Q Consensus 45 L~~~~~Gl~~~n--PiglAaG~d-k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~---~~iiN~~Gl~N~ 118 (362)
..++++.+.+-| |+.|=||+. -..+.+. +.- +-.++.+|-+. |- |.+|.-.=| ++.+| ++.-+
T Consensus 3 ~~vk~g~i~~~n~~~f~LiaGpcviEs~d~a-~~~----a~~l~~~t~~l--gi--~~vfKsSfDKANRsSi~--s~RGp 71 (279)
T COG2877 3 KVVKVGDIVIGNDLPFVLIAGPCVIESRDLA-LEI----AEHLKELTEKL--GI--PYVFKSSFDKANRSSIH--SYRGP 71 (279)
T ss_pred CEEEECCEEECCCCCEEEEECCHHHCHHHHH-HHH----HHHHHHHHHCC--CC--CEEEECCCCCCCCCCCC--CCCCC
T ss_conf 3688687774288853797144200107889-999----99999998603--98--56986243423333211--24687
Q ss_pred CHHHHHHHHHHHHH--CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 77889998764100--0121000110454246788776555420675526983033365322110000234321111224
Q gi|254780434|r 119 GYHTVFSRLSKIQP--TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVM 196 (362)
Q Consensus 119 G~~~~~~~l~~~~~--~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~ 196 (362)
|+|.-++-+.+.+. +.|++--|.. .. -+..+++.+|.+-+ |..|-+-.+-+.
T Consensus 72 GLeeglki~~~vK~efgv~ilTDVHe------~~-----q~~~vA~VvDilQi---------------PAFL~RQTDLlv 125 (279)
T COG2877 72 GLEEGLKILQEVKEEFGVPILTDVHE------PS-----QAQPVAEVVDVLQI---------------PAFLCRQTDLLV 125 (279)
T ss_pred CHHHHHHHHHHHHHHCCCCEEECCCC------HH-----HCCHHHHHHHHHCC---------------HHHHHHHHHHHH
T ss_conf 78889999999998719963413588------66-----53147755002213---------------088763079999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 445565531268851786505777748889999987644982999806
Q gi|254780434|r 197 QTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSN 244 (362)
Q Consensus 197 ~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~N 244 (362)
.. ..+..+|=+|=+-.+..-++..++..+.+.|-+.|.++-
T Consensus 126 A~-------AkTg~~vNvKKgQFLaPwdMkniv~K~~~~gn~~v~lcE 166 (279)
T COG2877 126 AA-------AKTGAVVNVKKGQFLAPWDMKNIVEKFLETGNNKVILCE 166 (279)
T ss_pred HH-------HHHCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99-------975884761265515866755599999853898679972
No 377
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=74.11 E-value=6.7 Score=19.10 Aligned_cols=77 Identities=12% Similarity=0.090 Sum_probs=39.5
Q ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 65057777488899999876449829998066555323457754463221135645424689999999740897489996
Q gi|254780434|r 214 LKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGT 293 (362)
Q Consensus 214 vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~ 293 (362)
+-|+.+.+. +++++++.+..+|.|.++.. +|... ..-.+++..+++.--.+++|+..
T Consensus 31 i~lG~~~~~---e~~~~~a~e~~ad~i~vSsl-------------------~g~~~-~~~~~l~~~L~e~G~~di~vvvG 87 (128)
T cd02072 31 VNLGVLSPQ---EEFIDAAIETDADAILVSSL-------------------YGHGE-IDCKGLREKCDEAGLKDILLYVG 87 (128)
T ss_pred EECCCCCCH---HHHHHHHHHCCCCEEEECCC-------------------CCCCC-HHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 847988999---99999998739999998232-------------------02562-48999999999679999989978
Q ss_pred CCCCCHHH-----HHHHHHCCCCEE
Q ss_conf 78899999-----999998399975
Q gi|254780434|r 294 GGISSTKD-----ALDKIMAGANLI 313 (362)
Q Consensus 294 GGI~s~~D-----a~e~l~aGAs~V 313 (362)
|++-.+++ ...+..+|.++|
T Consensus 88 G~i~i~~~d~~~~~~~l~~~Gv~~v 112 (128)
T cd02072 88 GNLVVGKQDFEDVEKRFKEMGFDRV 112 (128)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 9867783104899999996696857
No 378
>pfam04476 DUF556 Protein of unknown function (DUF556). Family of uncharacterized, hypothetical prokaryotic proteins.
Probab=73.78 E-value=6.9 Score=19.05 Aligned_cols=203 Identities=13% Similarity=0.151 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH-HCCCCCCEEECCC
Q ss_conf 867798887403675241020013687899886268842555410000247777788999876410-0012100011045
Q gi|254780434|r 66 KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ-PTSPIGINLGANK 144 (362)
Q Consensus 66 k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~-~~~pi~vsI~~~~ 144 (362)
+|.+......+.|+..|-+| +|.+| + +|.+. .+..+++...- ...|+.+-||-..
T Consensus 8 rn~~EA~~a~~~GaDIIDvK----nP~~G-------------a----LGa~~---p~vi~~i~~~v~~~k~vSatiGD~p 63 (235)
T pfam04476 8 ISVEEALEAIEGGADIIDVK----NPAEG-------------S----LGANF---PWVIREIRELTPKDKLVSATVGDVP 63 (235)
T ss_pred CCHHHHHHHHHCCCCEEEEC----CCCCC-------------C----CCCCC---HHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 99999999986799989827----98888-------------8----88999---9999999998567871689840788
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH-
Q ss_conf 4246788776555420675526983033-36532211000023432111122444556553126885178650577774-
Q gi|254780434|r 145 DSKDFILDYVSGIRLFFTIASYFTINIS-SPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSE- 222 (362)
Q Consensus 145 ~s~~~~~dy~~~~~~~~~~aD~iEiNiS-CPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~- 222 (362)
.....+. .........++||+-+-++ |.|.. +..+.+...+.++... ...+.+++-.-.|...
T Consensus 64 ~~p~~is--~aa~~~a~~GvDyVKVGl~~~~~~~-----~~~e~~~~~~~av~~~--------~~~~~vVav~~AD~~~~ 128 (235)
T pfam04476 64 YKPGTVS--LAALGAAVSGADYIKVGLYGVKNYD-----EAVEVMKNVVRAVKDF--------DSSKIVVAAGYADAYRI 128 (235)
T ss_pred CCCCHHH--HHHHHHHCCCCCEEEEECCCCCCHH-----HHHHHHHHHHHHHHHC--------CCCCEEEEEEECHHHHH
T ss_conf 9951678--9998755038998999437888679-----9999999999998722--------78866999960103331
Q ss_pred --HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHH
Q ss_conf --888999998764498299980665553234577544632211356454246899999997408974899967889999
Q gi|254780434|r 223 --EELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTK 300 (362)
Q Consensus 223 --~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~ 300 (362)
..-..+.+.+.++|++|+- +.|-.. ++...... +| .+.=.+++...++. + -..|..|=-..+
T Consensus 129 ~~~~p~~i~~~a~~~G~~gvM-iDT~~K-~g~sl~d~------~~----~~~L~~fv~~a~~~-g---l~~gLAGSL~~~ 192 (235)
T pfam04476 129 GAVEPLDVPEIAADAGADIAM-LDTAIK-DGTTLFDH------MK----IEDLESFVKLARDN-G---LKVALAGSISWE 192 (235)
T ss_pred CCCCHHHHHHHHHHCCCCEEE-EECCCC-CCCCHHHH------CC----HHHHHHHHHHHHHC-C---CEEEEECCCCHH
T ss_conf 388835679999975997899-874667-89766664------99----99999999999975-9---839984578888
Q ss_pred HHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 99999983999754527877069
Q gi|254780434|r 301 DALDKIMAGANLIQLYSAMIYEG 323 (362)
Q Consensus 301 Da~e~l~aGAs~VQi~Tali~~G 323 (362)
|.-.....+.|.+.+=+++--.|
T Consensus 193 di~~l~~l~pd~~G~RgavC~gg 215 (235)
T pfam04476 193 HIEPLKEIGTDIVGVRGAVCEGG 215 (235)
T ss_pred HHHHHHHCCCCEEEECHHHCCCC
T ss_conf 88999864999899745535799
No 379
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=73.38 E-value=6.6 Score=19.15 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=12.4
Q ss_pred HHHHHC-CCC-CEEEE----ECCCCCCC
Q ss_conf 554206-755-26983----03336532
Q gi|254780434|r 156 GIRLFF-TIA-SYFTI----NISSPNTP 177 (362)
Q Consensus 156 ~~~~~~-~~a-D~iEi----NiSCPNt~ 177 (362)
.++++. +.. |.+=| |+=||-.=
T Consensus 109 ~L~~~~ld~~~DlL~IENVGNLvCP~~F 136 (225)
T TIGR00073 109 ALKDLPLDDISDLLLIENVGNLVCPADF 136 (225)
T ss_pred HHHCCCCCCCCCEEEEEECCCCEECCCC
T ss_conf 5421688871462688644761006731
No 380
>PRK02227 hypothetical protein; Provisional
Probab=72.93 E-value=7.2 Score=18.92 Aligned_cols=216 Identities=15% Similarity=0.177 Sum_probs=109.6
Q ss_pred CCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 86779888740367524102001368789988626884255541000024777778899987641000121000110454
Q gi|254780434|r 66 KNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKD 145 (362)
Q Consensus 66 k~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~ 145 (362)
+|.+......+.|+.-|-+| +|.+| + +|...+ +.+.+-.+......|+.+-||-...
T Consensus 8 r~~~EA~~a~~~gaDIIDvK----nP~~G-------------a----LGa~~p--~~I~~I~~~v~~~~~vSatiGD~p~ 64 (239)
T PRK02227 8 RNLEEALEALEGGADIIDVK----NPKEG-------------S----LGANFP--WVIREIVAAVPGRKPVSATIGDVPY 64 (239)
T ss_pred CCHHHHHHHHHCCCCEEEEC----CCCCC-------------C----CCCCCH--HHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 99899999985799989827----98888-------------7----889999--9999999985799717988369789
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC---CCCC
Q ss_conf 246788776555420675526983033-365322110000234321111224445565531268851786505---7777
Q gi|254780434|r 146 SKDFILDYVSGIRLFFTIASYFTINIS-SPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKIS---PDLS 221 (362)
Q Consensus 146 s~~~~~dy~~~~~~~~~~aD~iEiNiS-CPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLs---Pd~~ 221 (362)
....+.. ........++||+-+-++ |++.. ...+.++.+....... . .....|-|=.+ ++.+
T Consensus 65 ~~~~i~~--a~~~~a~~GvdyVKvGl~~~~~~~---------~~~~~l~~v~~a~k~~--~-~~~~~VaV~yAD~~~~~~ 130 (239)
T PRK02227 65 KPGTAAL--AALGAAATGVDYVKVGLYGTKTAE---------EAVEVMAAVVRAVKDL--D-PNKRVVAVLYADAGRDGS 130 (239)
T ss_pred CCHHHHH--HHHHHHHCCCCEEEEECCCCCCHH---------HHHHHHHHHHHHHHHC--C-CCCEEEEEEEECCCCCCC
T ss_conf 9379999--998766139998999457888679---------9999999999987511--6-797399999832642247
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHH
Q ss_conf 48889999987644982999806655532345775446322113564542468999999974089748999678899999
Q gi|254780434|r 222 EEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKD 301 (362)
Q Consensus 222 ~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~D 301 (362)
..-.++.+.+.++|++|+- +.|-.. ++...... ++ .+.=.+++...++ .+ -..|.-|=-..+|
T Consensus 131 -~~p~~i~~~a~~~g~~gvM-iDT~~K-dg~sL~d~------~~----~~~L~~fv~~a~~-~g---l~~gLAGSL~~~d 193 (239)
T PRK02227 131 -ISPLDLPAIAAEAGFDGAM-LDTAGK-DGRSLFDH------MD----EEELAEFVAEARA-HG---LMTALAGSLKLED 193 (239)
T ss_pred -CCHHHHHHHHHHCCCCEEE-EECCCC-CCCCHHHC------CC----HHHHHHHHHHHHH-CC---CEEEEECCCCHHH
T ss_conf -8867789999985998999-863678-88753423------89----9999999999997-59---9399845688788
Q ss_pred HHHHHHCCCCEEEECHHHHCCC-------HHHHHHHHHHHH
Q ss_conf 9999983999754527877069-------789999999999
Q gi|254780434|r 302 ALDKIMAGANLIQLYSAMIYEG-------ISLPKRIIQGLS 335 (362)
Q Consensus 302 a~e~l~aGAs~VQi~Tali~~G-------p~~~~~I~~~L~ 335 (362)
.-.....+.|.+.+=+++-..| |..+.++.+.|.
T Consensus 194 i~~L~~l~Pd~lG~Rga~C~~g~R~~~id~~~V~~~~~~l~ 234 (239)
T PRK02227 194 IPALKRLGPDILGVRGAVCTGGDRNGRIDPELVAQLREALR 234 (239)
T ss_pred HHHHHHCCCCEEEECHHHCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 89997569998996565468997564339999999999862
No 381
>KOG3304 consensus
Probab=72.92 E-value=0.99 Score=24.73 Aligned_cols=48 Identities=15% Similarity=0.262 Sum_probs=29.3
Q ss_pred HHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
Q ss_conf 99999999839997545278770697899999999999999838997789616975
Q gi|254780434|r 299 TKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYT 354 (362)
Q Consensus 299 ~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~~~ 354 (362)
.+|++||-.--|..|+-+-.+ -++..+|+++|--++|-|+.|.|-...
T Consensus 61 ~q~a~eM~vRAa~mVrA~dsL--------lKLvsdLKqflIl~dFhsln~~I~q~~ 108 (148)
T KOG3304 61 EQDAYEMHVRAANMVRAGDSL--------LKLVSDLKQFLILNDFHSLNEAIDQRN 108 (148)
T ss_pred CHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 068999999999999978999--------999999999999813077789999999
No 382
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=72.44 E-value=7.4 Score=18.84 Aligned_cols=129 Identities=17% Similarity=0.228 Sum_probs=69.3
Q ss_pred CCCE--EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC------C-CCHHHHHHHHHHHH
Q ss_conf 5526--9830333653221100002343211112244455655312688517865057------7-77488899999876
Q gi|254780434|r 163 IASY--FTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISP------D-LSEEELDDIAVEVL 233 (362)
Q Consensus 163 ~aD~--iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsP------d-~~~~~i~~ia~~a~ 233 (362)
+||+ +.+|+.+++ +.+.+.++-.-..+. ....+|+++=.=| | .+.+.+...++.+.
T Consensus 89 GAdaV~~~v~~Gs~~--------E~~~l~~l~~v~~ea-------~~~G~Pll~~~yprG~~~~~~~d~~~ia~aaRia~ 153 (235)
T cd00958 89 GADAVGVTVYVGSEE--------EREMLEELARVAAEA-------HKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGA 153 (235)
T ss_pred CCCEEEEEEECCCCH--------HHHHHHHHHHHHHHH-------HHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 556799998689816--------899999999999999-------98399789997416876556566899999999999
Q ss_pred HCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC--CCCHHHHH----HHHH
Q ss_conf 44982999806655532345775446322113564542468999999974089748999678--89999999----9998
Q gi|254780434|r 234 SHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGG--ISSTKDAL----DKIM 307 (362)
Q Consensus 234 ~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GG--I~s~~Da~----e~l~ 307 (362)
|.|+|-|=. +-+ | ..+..+++-+.+ .+|++-.|| -.+.+|++ +-+.
T Consensus 154 ELGADiVKv-~y~-------------------g------~~e~f~~vv~~~--~vPVviaGG~k~~~~~~~L~~v~~a~~ 205 (235)
T cd00958 154 ELGADIVKT-KYT-------------------G------DAESFKEVVEGC--PVPVVIAGGPKKDSEEEFLKMVYDAME 205 (235)
T ss_pred HHCCCEEEE-CCC-------------------C------CHHHHHHHHHHC--CCCEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 978998982-399-------------------9------989999999708--998998089999999999999999997
Q ss_pred CCCCEEEECHHHHCCCHHHHHHHHHHHHH
Q ss_conf 39997545278770697899999999999
Q gi|254780434|r 308 AGANLIQLYSAMIYEGISLPKRIIQGLSD 336 (362)
Q Consensus 308 aGAs~VQi~Tali~~Gp~~~~~I~~~L~~ 336 (362)
+||+=|-++.- +|+-|. ..++.+.|.+
T Consensus 206 aGa~Gv~~GRN-vfQ~~~-p~~~~~al~~ 232 (235)
T cd00958 206 AGAAGVAVGRN-IFQRPD-PVAMLRAISA 232 (235)
T ss_pred CCCCEEEECCH-HHCCCC-HHHHHHHHHH
T ss_conf 69956763641-225888-9999999997
No 383
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=71.93 E-value=7.6 Score=18.77 Aligned_cols=119 Identities=18% Similarity=0.093 Sum_probs=57.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEC-CCCC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 786505777748889999987644982999806-6555---323457754463221135645424689999999740897
Q gi|254780434|r 212 IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSN-TTLS---RKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPK 287 (362)
Q Consensus 212 i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~N-T~~~---~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~ 287 (362)
+++|+.-|..+....-++.++.+.|++-+...- ++.. +..+.....-...-+++|.-. .....++..+++.-.++
T Consensus 16 lvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~-~l~~~lve~lre~G~~~ 94 (143)
T COG2185 16 LVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHL-TLVPGLVEALREAGVED 94 (143)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCHHH-HHHHHHHHHHHHHCCCC
T ss_conf 99536765443131999999985793798158758999999999864798899973440478-99999999999819755
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHH-HHHHHHHHHHHHHHH
Q ss_conf 48999678899999999998399975452787706978-999999999999998
Q gi|254780434|r 288 IAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGIS-LPKRIIQGLSDFLNK 340 (362)
Q Consensus 288 i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~-~~~~I~~~L~~~l~~ 340 (362)
+. +.+||+-..+|..++-..|.+.+=- |+ -+.++.+++...|.+
T Consensus 95 i~-v~~GGvip~~d~~~l~~~G~~~if~--------pgt~~~~~~~~v~~~l~~ 139 (143)
T COG2185 95 IL-VVVGGVIPPGDYQELKEMGVDRIFG--------PGTPIEEALSDLLTRLGA 139 (143)
T ss_pred EE-EEECCCCCCHHHHHHHHHCCCEEEC--------CCCCHHHHHHHHHHHHHH
T ss_conf 48-8656866813679999818665468--------999899999999999876
No 384
>TIGR01064 pyruv_kin pyruvate kinase; InterPro: IPR001697 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis , the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions . The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined , . The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. ; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis.
Probab=71.76 E-value=7.6 Score=18.74 Aligned_cols=234 Identities=18% Similarity=0.173 Sum_probs=115.8
Q ss_pred EEEECCEECCCCEEECCC----CCCCHHHHHHHHHCCCCEEECCC---CCCCCCCCCC----------------CCC-EE
Q ss_conf 168887335997485346----88867798887403675241020---0136878998----------------862-68
Q gi|254780434|r 46 NTKVAGISLSNPLGMAAG----YDKNAEVPIELLKLGFGFVEIGT---VTPHPQAGNP----------------RPR-VF 101 (362)
Q Consensus 46 ~~~~~Gl~~~nPiglAaG----~dk~~~~~~~l~~~G~G~v~~kt---it~~p~~GNp----------------~PR-~~ 101 (362)
++++.-++-..++-|..| ++.+- .+..-.+-+-..+..+. ++..-.+|.. ..+ +.
T Consensus 88 eIR~g~~~~~~~~~l~~G~~v~~~~~~-~~~~~~~~~~~~v~Y~~gYnl~~~v~~G~~iLvDDG~i~L~V~~~~~~~~v~ 166 (513)
T TIGR01064 88 EIRTGEIKGDGEVKLKKGDKVILTTDV-KYKGEGSEEKVSVDYKGGYNLVKDVVEGDKILVDDGKISLVVVSVEGDKTVI 166 (513)
T ss_pred EEEEEECCCCCCEEECCCCEEEEECCH-HHHCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCEEEEEEEEECCCCEEE
T ss_conf 799874178875686278879982571-3420347786687167865565402688889876677999998862885689
Q ss_pred -EEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
Q ss_conf -8425554100002477777889998764100012100011045424678877655542067552698303336532211
Q gi|254780434|r 102 -RLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLR 180 (362)
Q Consensus 102 -r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~ 180 (362)
+..+++-+-|+-|.|=||. ++.-..-||-..+|....+ .-++|++-+.| +++
T Consensus 167 ~~v~ngG~l~~~KGvNlPG~------------------~~~LP~lsEKD~~Dl~Fg~---~~gvD~va~SF--vR~---- 219 (513)
T TIGR01064 167 CEVLNGGTLKSKKGVNLPGA------------------DVDLPALSEKDKKDLKFGV---EQGVDFVAASF--VRT---- 219 (513)
T ss_pred EEEEECCEECCCCCEECCCC------------------CCCCCCCCHHHHHHHHHHH---HCCCCEEEECC--CCC----
T ss_conf 99996868717871555887------------------2015667988899999998---72978899727--888----
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH--HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 00002343211112244455655312688517865057777488--8999998764498299980665553234577544
Q gi|254780434|r 181 SLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEE--LDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNH 258 (362)
Q Consensus 181 ~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~--i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~ 258 (362)
-+.|.+.|.........++||+.|+=-...-.+ |++|+++ .|||-+. |=++..+...
T Consensus 220 -----------~~DV~~~R~~L~~~G~~~~~IIaKIE~~~gv~N~a~deI~~a-----SDGiMVA-----RGDLGvEip~ 278 (513)
T TIGR01064 220 -----------AEDVEEVREVLEEKGGKDVKIIAKIENQEGVDNDAIDEIAEA-----SDGIMVA-----RGDLGVEIPA 278 (513)
T ss_pred -----------HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHH-----HCCEEEE-----ECCCCEECCH
T ss_conf -----------756999999999708898648876368433570679999987-----2952897-----6567025472
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC------------CHHHHHHHHHCCCCEEEECHHHHC--C--
Q ss_conf 632211356454246899999997408974899967889------------999999999839997545278770--6--
Q gi|254780434|r 259 EQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGIS------------STKDALDKIMAGANLIQLYSAMIY--E-- 322 (362)
Q Consensus 259 ~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~------------s~~Da~e~l~aGAs~VQi~Tali~--~-- 322 (362)
.+ -|...+.+-+..+..+ .|+|-.-=.. ..-|++.-++-|||||++----.. .
T Consensus 279 ee---------Vp~~QK~~I~~cn~~g--k~VItATQMLdSMi~Np~PTRAEVsDVANAiLDGtDAvMLSGETA~G~YP~ 347 (513)
T TIGR01064 279 EE---------VPILQKKLIRKCNRAG--KPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPV 347 (513)
T ss_pred HH---------HHHHHHHHHHHHHHHC--CEEEEEECCHHHCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCCCCCHH
T ss_conf 47---------9999999999998509--927998332455006888941113223555306776131010113477808
Q ss_pred -CHHHHHHHHHHHHHHHH
Q ss_conf -97899999999999999
Q gi|254780434|r 323 -GISLPKRIIQGLSDFLN 339 (362)
Q Consensus 323 -Gp~~~~~I~~~L~~~l~ 339 (362)
--....+|..+=.+.+.
T Consensus 348 eAV~~M~~Ia~~aE~~~~ 365 (513)
T TIGR01064 348 EAVQMMAKIAKEAEKALA 365 (513)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999986333
No 385
>pfam01474 DAHP_synth_2 Class-II DAHP synthetase family. Members of this family are aldolase enzymes that catalyse the first step of the shikimate pathway.
Probab=71.58 E-value=5.4 Score=19.78 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=28.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE-EEEE
Q ss_conf 88517865057777488899999876449829-9980
Q gi|254780434|r 208 KFVPIFLKISPDLSEEELDDIAVEVLSHKVEG-IIVS 243 (362)
Q Consensus 208 ~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dG-iv~~ 243 (362)
..-||.+|++|.++.+++.++++.+.-....| +++|
T Consensus 279 I~NPIGvKvGP~~~~~el~~l~~~LnP~~epGRltLI 315 (437)
T pfam01474 279 IANPIGVKVGPSTTPDELLRLIDRLNPDNEPGRLTLI 315 (437)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 6787056679999999999999973988899739998
No 386
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=71.42 E-value=7.8 Score=18.69 Aligned_cols=157 Identities=19% Similarity=0.248 Sum_probs=79.1
Q ss_pred HHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC-------------C
Q ss_conf 765554206-75526983033365322110000234321111224445565531268851786505-------------7
Q gi|254780434|r 153 YVSGIRLFF-TIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKIS-------------P 218 (362)
Q Consensus 153 y~~~~~~~~-~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLs-------------P 218 (362)
....+++.+ +-..++-+-++| |..|++..+ +.. +++.+. ......+|+++--+ |
T Consensus 141 Le~~i~~~g~~~I~~v~~tiTn-N~~GGQPVS----m~N----ir~v~~---la~~~giplvlDaaRfaENAyFIk~rE~ 208 (431)
T cd00617 141 LEKLIDEVGAENIPYIVLTITN-NTAGGQPVS----MAN----LREVRE---LAHKYGIPVVLDAARFAENAYFIKEREE 208 (431)
T ss_pred HHHHHHHHCCCCEEEEEEEEEE-CCCCCCCCC----HHH----HHHHHH---HHHHCCCCEEEEHHHHHHHHHHHHHCCC
T ss_conf 9999987386661089999863-687885667----899----999999---9998099799876678876899984353
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCC------------CC-------CCCCCCCCCCCCCCCCCCCCCCHHHHH----
Q ss_conf 7774888999998764498299980665------------55-------323457754463221135645424689----
Q gi|254780434|r 219 DLSEEELDDIAVEVLSHKVEGIIVSNTT------------LS-------RKGVQCSDNHEQDGGLSGSPLFLKSTI---- 275 (362)
Q Consensus 219 d~~~~~i~~ia~~a~~~g~dGiv~~NT~------------~~-------~~~~~~~~~~~~~GGlSG~~i~~~al~---- 275 (362)
-..+.-+.+|++..-.. +||++++-.- .+ +.......+-..+|||||+-+.-++..
T Consensus 209 gy~d~si~eI~rEmfs~-aDg~tmSaKKD~~vniGG~ia~~D~~l~~~~~~~~i~~EGf~TYGGlaGRD~eAlA~GL~E~ 287 (431)
T cd00617 209 GYRDKSIAEIAREMFSY-ADGCTMSAKKDGLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREA 287 (431)
T ss_pred CCCCCCHHHHHHHHHHH-HHEEEEEECCCCCCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCHHHH
T ss_conf 02479999999999854-02789970314532455678857799999997543200587443563253499986540754
Q ss_pred -----------HHHHHHHHC-CCCEEEEE-ECCCCCHHHH-------------------HHHHHCCCCEEEECHHHHCC
Q ss_conf -----------999999740-89748999-6788999999-------------------99998399975452787706
Q gi|254780434|r 276 -----------ALAKIRQRV-GPKIAIIG-TGGISSTKDA-------------------LDKIMAGANLIQLYSAMIYE 322 (362)
Q Consensus 276 -----------~i~~i~~~~-~~~i~IIg-~GGI~s~~Da-------------------~e~l~aGAs~VQi~Tali~~ 322 (362)
.|.++.+.+ ...+||+- +||=--.-|| .-|+..|-..|.++|-+.-+
T Consensus 288 ~d~~yl~~Ri~qv~yL~~~L~~~GvPvv~P~GGHav~iDA~~flPhip~~~fPa~aLa~~LY~~~GIR~~E~Gs~~~gr 366 (431)
T cd00617 288 VEEDYLRHRVEQVRYLGDRLDEAGVPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGR 366 (431)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEEHHHHCCCCCHHHCCHHHHHHHHHHHCCCCEEEECCEECCC
T ss_conf 3679999779999999999998899666689743899746774689981439189999999997094568540200254
No 387
>PRK06256 biotin synthase; Validated
Probab=71.19 E-value=7.9 Score=18.66 Aligned_cols=116 Identities=18% Similarity=0.097 Sum_probs=66.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78650577774888999998764498299980665553234577544632211356454246899999997408974899
Q gi|254780434|r 212 IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAII 291 (362)
Q Consensus 212 i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~II 291 (362)
.++-|. .+.++..+.+..+.+.+++-| -+|.....++++-..... +| -.-.++.|+-.|=.. ++.-|.
T Consensus 206 ~i~GlG--Et~edrve~l~~Lr~l~~~si-pin~l~P~~gTpl~~~~~----l~----~~e~lr~iAi~Rl~~-P~~~Ir 273 (325)
T PRK06256 206 GIIGMG--ETLEDRAEHAFFLKELDADSI-PINFLNPIKGTPLEDLPE----LT----PLECLKTIAIFRLIN-PDKEIR 273 (325)
T ss_pred EEECCC--CCHHHHHHHHHHHHCCCCCEE-ECCCCEECCCCCCCCCCC----CC----HHHHHHHHHHHHHHC-CCCEEE
T ss_conf 376689--998999999999971999889-546701069986688999----89----999999999999978-995489
Q ss_pred EECCC-CCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 96788-999999999983999754527877069789999999999999983899
Q gi|254780434|r 292 GTGGI-SSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362)
Q Consensus 292 g~GGI-~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362)
-+||= ..-.+....+++||+.+.++--+--.|...-.+ .+.+++.||.
T Consensus 274 ~agGr~~~~~~~~~~~~~gan~~~~G~~lTt~g~~~~~d-----~~~i~~lg~~ 322 (325)
T PRK06256 274 IAGGREIALRSLQPLALKGANSIFVGNYLTTLGQPAEAD-----LKMIEDLGFE 322 (325)
T ss_pred EECCCCCCCHHHHHHHHHHCHHHEECCCCCCCCCCHHHH-----HHHHHHCCCC
T ss_conf 707855225567999986173514666537899786799-----9999986994
No 388
>pfam02007 MtrH Tetrahydromethanopterin S-methyltransferase MtrH subunit. The enzyme tetrahydromethanopterin S-methyltransferase EC:2.1.1.86 is composed of eight subunits. The enzyme is a membrane- associated enzyme complex which catalyses an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide.
Probab=70.68 E-value=5.3 Score=19.82 Aligned_cols=52 Identities=10% Similarity=0.192 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHH--HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 788999876410--00121000110454246788776555420675526983033365
Q gi|254780434|r 120 YHTVFSRLSKIQ--PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPN 175 (362)
Q Consensus 120 ~~~~~~~l~~~~--~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPN 175 (362)
.|.+.++-..+. .+.|.++-|-+ .|+++++.|.+-+....+. -+-|+=+.|.
T Consensus 49 Ae~Lin~q~elsd~TGnp~~~qI~g--~t~EA~~kYidfv~~i~d~--PfliDSt~~~ 102 (296)
T pfam02007 49 AEALINTQEELSDETGNPYLVQIFG--ETPEAIIRYIDFVADVTDA--PFLIDSTEGE 102 (296)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEC--CCHHHHHHHHHHHHCCCCC--CEEECCCCHH
T ss_conf 9999999998877558965777644--8989999988876325778--7564388678
No 389
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=70.58 E-value=8.1 Score=18.57 Aligned_cols=77 Identities=19% Similarity=0.341 Sum_probs=50.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 51786505777748889999987644982999806655532345775446322113564542468999999974089748
Q gi|254780434|r 210 VPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIA 289 (362)
Q Consensus 210 ~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~ 289 (362)
+||-|-.. .+++ +..+.++|+|.|-+-|-. . ..-..++..+++. ++++.
T Consensus 81 ~~I~VEv~------tl~e-~~~a~~~~~d~I~LDn~s------------p-----------e~l~~~v~~l~~~-~~~v~ 129 (169)
T pfam01729 81 VKIEVEVE------NLEE-LEEALEAGADIIMLDNFS------------P-----------EEVREAVEELDER-AGRVL 129 (169)
T ss_pred CEEEEEEE------HHHH-HHHHHHCCCCEEEECCCC------------H-----------HHHHHHHHHHHHH-CCCEE
T ss_conf 70999960------1998-999984699899977999------------9-----------9999999999975-89679
Q ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf 99967889999999999839997545278
Q gi|254780434|r 290 IIGTGGISSTKDALDKIMAGANLIQLYSA 318 (362)
Q Consensus 290 IIg~GGI~s~~Da~e~l~aGAs~VQi~Ta 318 (362)
|-++|||. .+.+.+|-..|.|.+-+++-
T Consensus 130 iEaSGgI~-~~ni~~yA~tGvD~IS~gal 157 (169)
T pfam01729 130 LEVSGGIT-LDNVLEYAKTGVDVISVGAL 157 (169)
T ss_pred EEECCCCC-HHHHHHHHHCCCCEEECCHH
T ss_conf 99618999-99999999769999985864
No 390
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms . The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=70.33 E-value=3.4 Score=21.08 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=26.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE-EEE
Q ss_conf 88517865057777488899999876449829-998
Q gi|254780434|r 208 KFVPIFLKISPDLSEEELDDIAVEVLSHKVEG-IIV 242 (362)
Q Consensus 208 ~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dG-iv~ 242 (362)
.+-||-||++|.++-+++.++++.+.-...=| +|+
T Consensus 284 v~NPiGiKvGP~m~pd~ll~lie~LdP~~~PGRLtl 319 (450)
T TIGR01358 284 VRNPIGIKVGPSMTPDELLRLIERLDPENEPGRLTL 319 (450)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 368503653886668899988654077998963688
No 391
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=70.24 E-value=8.2 Score=18.52 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=51.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHCCCC
Q ss_conf 85178650577774888999998764498299980665553234577544632211356454246-89999999740897
Q gi|254780434|r 209 FVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKS-TIALAKIRQRVGPK 287 (362)
Q Consensus 209 ~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~a-l~~i~~i~~~~~~~ 287 (362)
..+|.|-.. .+++ +..+.++|+|.|-+-|=+ |-- .+++..++ ...++
T Consensus 189 ~~kIeVEv~------tl~~-~~ea~~~gaD~IlLDnms------------------------p~~l~~av~~~~-~~~~~ 236 (284)
T PRK06096 189 EKKIVVEAD------TPKE-AIAALRAQPDVLQLDKFS------------------------PQQATEIAQIAP-SLAPH 236 (284)
T ss_pred CCCEEEEEC------CHHH-HHHHHHCCCCEEEECCCC------------------------HHHHHHHHHHHH-HHCCC
T ss_conf 998899809------9999-999985799999968989------------------------999999999987-21797
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHH
Q ss_conf 48999678899999999998399975452787706978
Q gi|254780434|r 288 IAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGIS 325 (362)
Q Consensus 288 i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~ 325 (362)
+.+-++|||. .+.+.+|-..|.|.+ +.++ +|+.+-
T Consensus 237 ~~lEaSGGI~-~~ni~~yA~tGVD~i-~tsa-~~~a~p 271 (284)
T PRK06096 237 CTLALTGGIN-LTTLKNYLDCGIRLF-ITSA-PYYAAP 271 (284)
T ss_pred EEEEEECCCC-HHHHHHHHHCCCCEE-EECC-CCCCCH
T ss_conf 7999989999-999999998099999-8282-106783
No 392
>PRK10693 response regulator of RpoS; Provisional
Probab=70.01 E-value=8.3 Score=18.49 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=20.5
Q ss_pred CCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCC
Q ss_conf 9974853468886779888740367524102001
Q gi|254780434|r 55 SNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVT 88 (362)
Q Consensus 55 ~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit 88 (362)
.-||++=+|.+... .+.+..++|+--..+|.|.
T Consensus 79 ~~PVIvlTa~~~~~-d~v~al~~GA~DyL~KPI~ 111 (337)
T PRK10693 79 QTPVLVISATENMA-DIAKALRLGVEDVLLKPVK 111 (337)
T ss_pred CCEEEEEECCCCHH-HHHHHHHCCCCEEEECCCC
T ss_conf 96499998689999-9999997499589978969
No 393
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=69.75 E-value=8.4 Score=18.45 Aligned_cols=88 Identities=16% Similarity=0.233 Sum_probs=52.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--
Q ss_conf 8517865057777488899999876449--829998066555323457754463221135645424689999999740--
Q gi|254780434|r 209 FVPIFLKISPDLSEEELDDIAVEVLSHK--VEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRV-- 284 (362)
Q Consensus 209 ~~Pi~vKLsPd~~~~~i~~ia~~a~~~g--~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~-- 284 (362)
.+|+.+-+ |....+..+..+++.+.+ .+||=+- ++... . | ..-.+++++|+.+
T Consensus 184 ~~~~i~Lv--Dty~~~~~~al~~~~~~~~~l~gVRlD----------s~~~~--~----G-----~~~~l~~~vR~~LD~ 240 (302)
T cd01571 184 DVPRIALI--DTFNDEKEEALKAAKALGDKLDGVRLD----------TPSSR--R----G-----VFRYLIREVRWALDI 240 (302)
T ss_pred CCCEEEEE--ECCCHHHHHHHHHHHHHCCCCCEEEEC----------CCCCC--C----C-----CHHHHHHHHHHHHHH
T ss_conf 89769999--655466889999999746003899807----------99875--8----7-----799999999999976
Q ss_pred --CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf --897489996788999999999983999754527877
Q gi|254780434|r 285 --GPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMI 320 (362)
Q Consensus 285 --~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali 320 (362)
..++.|+++||+ +.+.+.++-.+|.|...|+|.+.
T Consensus 241 ~G~~~vkI~aSggl-~e~~I~~l~~~gID~~GVGt~l~ 277 (302)
T cd01571 241 RGYKHVKIFVSGGL-DEEDIKELEDVGVDAFGVGTAIS 277 (302)
T ss_pred CCCCCCEEEEECCC-CHHHHHHHHHCCCCEEECCCCCC
T ss_conf 69887489996999-99999999857999998185437
No 394
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=69.58 E-value=8.5 Score=18.43 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=22.2
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECH
Q ss_conf 0897489996788999999999983999754527
Q gi|254780434|r 284 VGPKIAIIGTGGISSTKDALDKIMAGANLIQLYS 317 (362)
Q Consensus 284 ~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~T 317 (362)
..+++.+=++|||. .+.+-+|-..|-|.+-++.
T Consensus 231 ~~~~~~lEaSGgIt-~~ni~~yA~tGVD~IS~ga 263 (280)
T COG0157 231 LAGRALLEASGGIT-LENIREYAETGVDVISVGA 263 (280)
T ss_pred CCCCEEEEEECCCC-HHHHHHHHHCCCCEEEECC
T ss_conf 47766999758978-7789998626997998073
No 395
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=69.22 E-value=8.6 Score=18.38 Aligned_cols=74 Identities=12% Similarity=0.116 Sum_probs=32.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC----CHHHHHHHHHHHHHCCCCEEEEEE-CCCCCHH
Q ss_conf 99999876449829998066555323457754463221135645----424689999999740897489996-7889999
Q gi|254780434|r 226 DDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPL----FLKSTIALAKIRQRVGPKIAIIGT-GGISSTK 300 (362)
Q Consensus 226 ~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i----~~~al~~i~~i~~~~~~~i~IIg~-GGI~s~~ 300 (362)
.+.++.-.++|||.|-++.|-. |-||..-- .|...+.+..+++.. +++|||.- +|...
T Consensus 190 i~yl~~Qi~aGAd~iqIFDSwa--------------g~L~~~~f~~f~~~~~~~I~~~ik~~~-~~~piI~f~kg~~~-- 252 (347)
T PRK00115 190 IAYLNAQIEAGAQAVQIFDSWA--------------GALSPADYREFSLPYMKRIVAELKREG-PDVPVILFPKGAGE-- 252 (347)
T ss_pred HHHHHHHHHHCCCEEEEECCCC--------------CCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCCEEEECCCCHH--
T ss_conf 9999999981998788505533--------------437889999998899999999999838-99987996389605--
Q ss_pred HHHHHHHCCCCEEEEC
Q ss_conf 9999998399975452
Q gi|254780434|r 301 DALDKIMAGANLIQLY 316 (362)
Q Consensus 301 Da~e~l~aGAs~VQi~ 316 (362)
-.-++-..|+|++.+-
T Consensus 253 ~l~~~~~~~~d~is~D 268 (347)
T PRK00115 253 LLEAMAETGVDAVGLD 268 (347)
T ss_pred HHHHHHHCCCCEEEEC
T ss_conf 6899985699889627
No 396
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=68.51 E-value=8.1 Score=18.56 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=31.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78650577774888999998764498299980665553234577544632211356454246899999997408974899
Q gi|254780434|r 212 IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAII 291 (362)
Q Consensus 212 i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~II 291 (362)
.++|+-|.++.+ +.+.+.+.|++||++--| +.|.++ ..++..+++.....++|+
T Consensus 291 ~llk~~PG~~~~----~l~~~~~~g~kGIVleg~--------------G~Gnvp--------~~l~~~i~~a~~~Gi~VV 344 (421)
T PRK04183 291 ALVKFYPGMDPE----ILDFYVDKGYKGIVIEGT--------------GLGHVS--------TDLIPSIKRATDDGVPVV 344 (421)
T ss_pred EEEEECCCCCHH----HHHHHHHCCCCEEEEEEE--------------CCCCCC--------HHHHHHHHHHHHCCCEEE
T ss_conf 999977998999----999997469878999716--------------589999--------899999999998899899
Q ss_pred EE
Q ss_conf 96
Q gi|254780434|r 292 GT 293 (362)
Q Consensus 292 g~ 293 (362)
-+
T Consensus 345 ~t 346 (421)
T PRK04183 345 MT 346 (421)
T ss_pred EE
T ss_conf 96
No 397
>pfam01136 Peptidase_U32 Peptidase family U32.
Probab=68.02 E-value=9.1 Score=18.22 Aligned_cols=38 Identities=8% Similarity=0.239 Sum_probs=21.1
Q ss_pred HHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999839997545278770697899999999999999
Q gi|254780434|r 300 KDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLN 339 (362)
Q Consensus 300 ~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~ 339 (362)
++.-+++.+|-+.+-|-.- .+.|..+.++.+-.++.++
T Consensus 160 ~~l~~L~~~Gv~slkIegr--~~~~~yv~~vv~~Yr~ald 197 (232)
T pfam01136 160 EELPELLEAGVDSLKIEGR--MKSPEYVAEVVRAYREALD 197 (232)
T ss_pred HHHHHHHHHCCCEEEEEEC--CCCHHHHHHHHHHHHHHHH
T ss_conf 9999999809988999841--5997899999999999999
No 398
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.67 E-value=9.3 Score=18.17 Aligned_cols=67 Identities=22% Similarity=0.306 Sum_probs=45.2
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
Q ss_conf 89999987644982999806655532345775446322113564542468999999974089748999678899999999
Q gi|254780434|r 225 LDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALD 304 (362)
Q Consensus 225 i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e 304 (362)
+.++ ..+.++|+|.|-+-|-. . ...-+++..+++ .++++.|.++|||. .+.+.+
T Consensus 203 l~q~-~~a~~~g~DiI~LDnm~------------~-----------~~~~~~v~~l~~-~~~~v~iEaSGgIn-~~ni~~ 256 (285)
T PRK07428 203 LEQV-QEALEYGADIIMLDNMP------------V-----------DQMQQAVQLIRQ-QNPRVKIEASGNIT-LETIRA 256 (285)
T ss_pred HHHH-HHHHHCCCCEEEECCCC------------H-----------HHHHHHHHHHHH-HCCCEEEEEECCCC-HHHHHH
T ss_conf 9999-99996699999987999------------9-----------999999999873-08988999989999-999999
Q ss_pred HHHCCCCEEEECH
Q ss_conf 9983999754527
Q gi|254780434|r 305 KIMAGANLIQLYS 317 (362)
Q Consensus 305 ~l~aGAs~VQi~T 317 (362)
|-..|.|.+-+++
T Consensus 257 yA~tGVD~Is~ga 269 (285)
T PRK07428 257 VAETGVDYISTSA 269 (285)
T ss_pred HHHCCCCEEECCH
T ss_conf 9974999998383
No 399
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=67.59 E-value=9.3 Score=18.16 Aligned_cols=87 Identities=21% Similarity=0.285 Sum_probs=57.0
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 05777748889999987644982999806655532345775446322113564542468999999974089748999678
Q gi|254780434|r 216 ISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGG 295 (362)
Q Consensus 216 LsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GG 295 (362)
++|+. +++.+.++-+...---++++.. .. -.|..||++. ..+..+.... .-|++=.||
T Consensus 132 l~~~~--ed~le~Vk~l~~~~~~~lIvLD---------i~----aVGt~~G~~~-----E~l~~~~~~s--~~pVllGGG 189 (229)
T COG1411 132 LGPWL--EDFLETVKDLNYRRDPGLIVLD---------IG----AVGTKSGPDY-----ELLTKVLELS--EHPVLLGGG 189 (229)
T ss_pred CCCCC--HHHHHHHHHHHCCCCCCEEEEE---------CC----CCCCCCCCCH-----HHHHHHHHHC--CCCEEECCC
T ss_conf 37771--0489999987525788849997---------55----4334669999-----9999998731--375344487
Q ss_pred CCCHHHHHHHHHCCCCEEEECHHHHCCCHH
Q ss_conf 899999999998399975452787706978
Q gi|254780434|r 296 ISSTKDALDKIMAGANLIQLYSAMIYEGIS 325 (362)
Q Consensus 296 I~s~~Da~e~l~aGAs~VQi~Tali~~Gp~ 325 (362)
|...+|..-....|-+.|-++||+ ++|--
T Consensus 190 V~g~Edlel~~~~Gv~gvLvaTal-h~G~v 218 (229)
T COG1411 190 VGGMEDLELLLGMGVSGVLVATAL-HEGVV 218 (229)
T ss_pred CCCHHHHHHHHCCCCCEEEEHHHH-HCCCC
T ss_conf 585777899861798546543356-52767
No 400
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.54 E-value=9.3 Score=18.15 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=45.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHCCCCEEEEEECCCCCHHHHH
Q ss_conf 89999987644982999806655532345775446322113564542468-99999997408974899967889999999
Q gi|254780434|r 225 LDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKST-IALAKIRQRVGPKIAIIGTGGISSTKDAL 303 (362)
Q Consensus 225 i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al-~~i~~i~~~~~~~i~IIg~GGI~s~~Da~ 303 (362)
+++ +..+.++|+|.|-+-|-+ |--+ +++... +...+++.|.++|||. .+.+.
T Consensus 191 l~e-a~~a~~~gaDiI~LDn~~------------------------~e~~k~~v~~~-~~~~~~v~ieaSGGI~-~~ni~ 243 (272)
T PRK05848 191 LEE-AKEAMNAGADIVMCDNMS------------------------VEETKEIVAYR-NANYPHVLLEASGNIS-LETIN 243 (272)
T ss_pred HHH-HHHHHHCCCCEEEECCCC------------------------HHHHHHHHHHH-HCCCCCEEEEEECCCC-HHHHH
T ss_conf 999-999984599989958999------------------------99999999987-4648877999979998-99999
Q ss_pred HHHHCCCCEEEECHH
Q ss_conf 999839997545278
Q gi|254780434|r 304 DKIMAGANLIQLYSA 318 (362)
Q Consensus 304 e~l~aGAs~VQi~Ta 318 (362)
+|-..|+|.+-+++.
T Consensus 244 ~yA~~GvD~Is~g~l 258 (272)
T PRK05848 244 AYAKSGVDAISSGSL 258 (272)
T ss_pred HHHHCCCCEEECCHH
T ss_conf 999659999987977
No 401
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family; InterPro: IPR011268 This entry describes a subset of the phosphorylase family. The entry excludes the methylthioadenosine phosphorylases (MTAP, IPR010044 from INTERPRO), which are believed to play a specific role in the recycling of methionine from methylthioadenosine. This entry consists of three clades of purine phosphorylases based on a neighbour-joining tree using the MTAP family as an out group. The highest-branching clade (IPR011269 from INTERPRO) consists of a group of sequences from both Gram-positive and Gram-negative bacteria which have been shown to act as purine nucleotide phosphorylases but whose physiological substrate and role in vivo remain unknown . Of the two remaining clades, one is xanthosine phosphorylase (XAPA, IPR010943 from INTERPRO); it is limited to certain gammaproteobacteria and constitutes a special purine phosphorylase found in a specialised operon for xanthosine catabolism . The enzyme also acts on the same purines (inosine and guanosine) as the other characterised members of this subfamily, but is only induced when xanthosine must be degraded. The remaining and largest clade consists of purine nucleotide phosphorylases (PNPH, IPR011270 from INTERPRO) from metazoa and bacteria which act primarily on guanosine and inosine, and do not act on adenosine. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterised with respect to substrate range. ; GO: 0004731 purine-nucleoside phosphorylase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=67.22 E-value=9.5 Score=18.11 Aligned_cols=92 Identities=12% Similarity=0.151 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCC---------CC----CCCCCCCCC----------CCCCC----CCCCCCCCHHHHH
Q ss_conf 888999998764498299980665---------55----323457754----------46322----1135645424689
Q gi|254780434|r 223 EELDDIAVEVLSHKVEGIIVSNTT---------LS----RKGVQCSDN----------HEQDG----GLSGSPLFLKSTI 275 (362)
Q Consensus 223 ~~i~~ia~~a~~~g~dGiv~~NT~---------~~----~~~~~~~~~----------~~~~G----GlSG~~i~~~al~ 275 (362)
++...-++.+.-.|+..++++|.- ++ +|++..+.. ...+| .||-. .+..++
T Consensus 76 ~~vt~PvR~mk~lGv~~lvvTNAAGg~n~~~~~GdLm~i~DHIN~~~~ag~nPLvGpN~~~FG~RFp~l~~A--YD~~lr 153 (266)
T TIGR01697 76 AAVTFPVRVMKLLGVEILVVTNAAGGLNADFKPGDLMIIKDHINLPGLAGFNPLVGPNDDEFGTRFPDLSNA--YDKELR 153 (266)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH--HHHHHH
T ss_conf 677689999986692089997466120678898537997112114400047878698885557899876645--679999
Q ss_pred -HHHHHHHHCCCCEE--E-----EEECC--CCCHHHHHHHHHCCCCEEEECHH
Q ss_conf -99999974089748--9-----99678--89999999999839997545278
Q gi|254780434|r 276 -ALAKIRQRVGPKIA--I-----IGTGG--ISSTKDALDKIMAGANLIQLYSA 318 (362)
Q Consensus 276 -~i~~i~~~~~~~i~--I-----Ig~GG--I~s~~Da~e~l~aGAs~VQi~Ta 318 (362)
.++++.++. +++ + +..+| =+|+...--+-..|||+|.+-|-
T Consensus 154 ~~~~~~A~~~--~~~~~l~EGVYv~~~GP~YETPAE~rm~~~lGAD~VGMSTV 204 (266)
T TIGR01697 154 ALAKDVAKEL--GVPRLLKEGVYVMVSGPSYETPAEIRMLRILGADAVGMSTV 204 (266)
T ss_pred HHHHHHHHHC--CCCCEEECCEEEEECCCCCCCHHHHHHHHHHCCCEEECCCC
T ss_conf 9999999856--89825652688850865952678999999848948705456
No 402
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=67.22 E-value=9.5 Score=18.11 Aligned_cols=51 Identities=20% Similarity=0.179 Sum_probs=27.5
Q ss_pred CCCCEEEECHHHHCC-C-HHHHHHH--HHHHHHHHHHCCCCCHHHHHCCCCHHHHH
Q ss_conf 399975452787706-9-7899999--99999999983899778961697526641
Q gi|254780434|r 308 AGANLIQLYSAMIYE-G-ISLPKRI--IQGLSDFLNKENEVNFENIRGSYTEYWAK 359 (362)
Q Consensus 308 aGAs~VQi~Tali~~-G-p~~~~~I--~~~L~~~l~~~G~~si~e~iG~~~~~~~~ 359 (362)
.|-+-|.++|=|-+- + |.-+.++ ...|.+-|.++||+ -+|+.+...+-|.|
T Consensus 251 ~G~dhVglGsDf~g~~~~p~gled~~~l~~l~~~L~~~G~~-e~~i~~i~~~N~lR 305 (313)
T COG2355 251 VGIDHVGLGSDFDGGTGPPDGLEDVGKLPNLTAALIERGYS-EEEIEKIAGENWLR 305 (313)
T ss_pred CCCCEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHH
T ss_conf 38421686446567888861012756779999999976999-99999999876999
No 403
>pfam06135 DUF965 Bacterial protein of unknown function (DUF965). This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=67.00 E-value=6.6 Score=19.17 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf 78999999999999998389977896169
Q gi|254780434|r 324 ISLPKRIIQGLSDFLNKENEVNFENIRGS 352 (362)
Q Consensus 324 p~~~~~I~~~L~~~l~~~G~~si~e~iG~ 352 (362)
..-+++|+...-+-|+++||+-|.+++|=
T Consensus 14 ~~~v~eiL~~Vy~AL~EKGYNPiNQiVGY 42 (79)
T pfam06135 14 EKDVREILTTVYQALEEKGYNPINQIVGY 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 77899999999999998589808778844
No 404
>pfam02662 FlpD Methyl-viologen-reducing hydrogenase, delta subunit. This family consist of methyl-viologen-reducing hydrogenase, delta subunit / heterodisulphide reductase. No specific functions have been assigned to this subunit. The aligned region corresponds to almost the entire delta chain sequence and contains 4 conserved cysteine residues. However, in two Archaeoglobus sequences this region corresponds to only the C-terminus of these proteins.
Probab=66.93 E-value=9.6 Score=18.08 Aligned_cols=13 Identities=23% Similarity=0.555 Sum_probs=7.5
Q ss_pred HHHHCCCCEEEEE
Q ss_conf 8764498299980
Q gi|254780434|r 231 EVLSHKVEGIIVS 243 (362)
Q Consensus 231 ~a~~~g~dGiv~~ 243 (362)
.|.+.|+|||.+.
T Consensus 47 ~A~~~GADGV~V~ 59 (124)
T pfam02662 47 KALEKGADGVLVL 59 (124)
T ss_pred HHHHCCCCEEEEE
T ss_conf 9998699979994
No 405
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=66.73 E-value=9.7 Score=18.05 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=51.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCE
Q ss_conf 51786505777748889999987644982999806655532345775446322113564542468999999974-08974
Q gi|254780434|r 210 VPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQR-VGPKI 288 (362)
Q Consensus 210 ~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~-~~~~i 288 (362)
.+|-|-.. .+++ +..+.++|+|.|-+-|-+. .--.+++..+++. ..+++
T Consensus 184 ~~IeVEv~------~lee-~~~a~~~g~d~I~LDn~s~-----------------------e~~~~~v~~l~~~~~~~~v 233 (279)
T PRK08385 184 KVVEVEVE------SLED-ALKAAKAGADIIMLDNMTP-----------------------EEIREVIEALKELGLREKV 233 (279)
T ss_pred CEEEEEEC------CHHH-HHHHHHCCCCEEEECCCCH-----------------------HHHHHHHHHHHHHCCCCCE
T ss_conf 61899709------8999-9999976999999849999-----------------------9999999998750768978
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf 899967889999999999839997545278
Q gi|254780434|r 289 AIIGTGGISSTKDALDKIMAGANLIQLYSA 318 (362)
Q Consensus 289 ~IIg~GGI~s~~Da~e~l~aGAs~VQi~Ta 318 (362)
.|.++|||. .+.+.+|-..|.|.+-+++-
T Consensus 234 ~ieaSGGI~-~~ni~~ya~tGVD~IS~g~l 262 (279)
T PRK08385 234 KIEVSGGIT-PETIAEYAKLDVDVISLGAL 262 (279)
T ss_pred EEEEECCCC-HHHHHHHHHCCCCEEECCHH
T ss_conf 999978998-99999998559899984977
No 406
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=66.72 E-value=9.7 Score=18.05 Aligned_cols=123 Identities=16% Similarity=0.062 Sum_probs=65.0
Q ss_pred CCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHC-CCCCEEEE--ECCCCCCCCCCCCCC
Q ss_conf 410000247777788999876410001210001104542467887765554206-75526983--033365322110000
Q gi|254780434|r 108 AIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFF-TIASYFTI--NISSPNTPGLRSLQK 184 (362)
Q Consensus 108 ~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~-~~aD~iEi--NiSCPNt~g~~~~~~ 184 (362)
+++...-=|.-|++-+.+.+.. .+.|+.-+|-+.+.. -..++|.+.+.++. .++|++-= |+..|.-
T Consensus 135 ~~~~~f~GP~fGI~g~R~~lgv--~~RPLlgtiiKPklG-Lsp~~~a~~~ye~~~GGvDfiKDDE~l~~~pf-------- 203 (467)
T PRK04208 135 AYVKTFKGPPFGIVVERERLNK--YGRPLLGTTPKPKLG-LSAKNYGRVVYECLRGGLDFTKDDENINSQPF-------- 203 (467)
T ss_pred HHHHCCCCCCCCHHHHHHHHCC--CCCCCEECCCCCCCC-CCHHHHHHHHHHHHCCCCCEEECCCCCCCCCC--------
T ss_conf 9994589987760769998277--887500124567678-99799999999997048756406644669888--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 234321111224445565531268851786505777748889999987644982999806
Q gi|254780434|r 185 KKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSN 244 (362)
Q Consensus 185 ~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~N 244 (362)
..+.+-+.++.+.......+...++=..+-++-+ +.+++.+-++.+.+.|+..+ ++|
T Consensus 204 -~p~~eRv~~v~~a~~~a~~eTGe~k~y~~NiTa~-~~~em~~Rae~~~e~G~~~v-Mvd 260 (467)
T PRK04208 204 -MRWRDRFLFVMEAIDKAEAETGERKGHYLNVTAP-TMEEMYKRAEFAKELGSPII-MID 260 (467)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC-CHHHHHHHHHHHHHCCCCEE-EEE
T ss_conf -9789999999999999999768951899862279-89999999999997599679-897
No 407
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type; InterPro: IPR004634 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signalling function. During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . These enzymes have a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half and was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. ; GO: 0009003 signal peptidase activity, 0006465 signal peptide processing, 0016021 integral to membrane.
Probab=66.66 E-value=5.5 Score=19.72 Aligned_cols=165 Identities=18% Similarity=0.216 Sum_probs=78.1
Q ss_pred HHHHHHHHHHC--CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 87765554206--7552698303336532211000023432111122444556553126885178650577774888999
Q gi|254780434|r 151 LDYVSGIRLFF--TIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDI 228 (362)
Q Consensus 151 ~dy~~~~~~~~--~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~i 228 (362)
+.+..+++.+. +.+.++.|=|-||= +. -...|-. ++..+..+...++||+|=|.- +.-.---=
T Consensus 345 D~~a~lLr~a~~D~~iKAvvLRinSPG---Gs-v~Ase~I---------R~e~~~~~~~GkKPVivSMG~-~AASGgYW- 409 (614)
T TIGR00705 345 DTVAALLRKARSDPDIKAVVLRINSPG---GS-VFASEII---------RRELERLQARGKKPVIVSMGA-MAASGGYW- 409 (614)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEEECCC---CC-EEHHHHH---------HHHHHHHHHCCCCCEEEECCH-HHHCCCCH-
T ss_conf 679999998707998128998863898---63-4287899---------999999982689978984350-23205300-
Q ss_pred HHHHHHCCCCEEEEE-CCC----------------CCC-CCCCCCCCCCCCCCCC--CCCCCHHH---------------
Q ss_conf 998764498299980-665----------------553-2345775446322113--56454246---------------
Q gi|254780434|r 229 AVEVLSHKVEGIIVS-NTT----------------LSR-KGVQCSDNHEQDGGLS--GSPLFLKS--------------- 273 (362)
Q Consensus 229 a~~a~~~g~dGiv~~-NT~----------------~~~-~~~~~~~~~~~~GGlS--G~~i~~~a--------------- 273 (362)
...-+|=|++- ||+ ++| -++..+... +++|. |..++|.+
T Consensus 410 ----iasaA~yIvA~p~TiTGSIGvfsvl~t~En~~~~y~Gv~~D~V~--t~~la~~GS~~~~~t~~~~~~~Q~~v~~~Y 483 (614)
T TIGR00705 410 ----IASAADYIVADPNTITGSIGVFSVLPTVENSLDRYIGVHVDGVS--TSELANVGSLLRPLTEEEQAIMQLSVEAGY 483 (614)
T ss_pred ----HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCEECEEECCEE--ECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf ----20455713347874310014453252255423100022316334--246446322347788478888633088899
Q ss_pred ---HHHHHHHHHHCCCCEEEEEECCCCCHHHH-------------------HHHHHCC-CCEEEECHHHHCCC-HH-HHH
Q ss_conf ---89999999740897489996788999999-------------------9999839-99754527877069-78-999
Q gi|254780434|r 274 ---TIALAKIRQRVGPKIAIIGTGGISSTKDA-------------------LDKIMAG-ANLIQLYSAMIYEG-IS-LPK 328 (362)
Q Consensus 274 ---l~~i~~i~~~~~~~i~IIg~GGI~s~~Da-------------------~e~l~aG-As~VQi~Tali~~G-p~-~~~ 328 (362)
+..|..-|+....++.=|+=|=|.+|+|| .+.-..| -.+||=++-=.|.. +. ++.
T Consensus 484 ~~FL~~Vs~aR~ls~~~vd~vAqG~vw~G~dA~~~GLVD~LG~l~~AVa~Aa~~~~~rqdtaV~q~~v~~y~~~~~s~~~ 563 (614)
T TIGR00705 484 ERFLEVVSKARNLSPTQVDKVAQGRVWTGEDAVKNGLVDELGGLDEAVAKAAKLAELRQDTAVKQWSVEVYKDEATSLIS 563 (614)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCEEEHHHHHHCCCEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCHHHH
T ss_conf 99999986230388889987756840001567663862026887789999999974477653011177786078630588
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780434|r 329 RIIQGLSD 336 (362)
Q Consensus 329 ~I~~~L~~ 336 (362)
++.+.|.+
T Consensus 564 ~ll~~l~~ 571 (614)
T TIGR00705 564 ELLDNLID 571 (614)
T ss_pred HHHHHHHH
T ss_conf 89988899
No 408
>pfam01208 URO-D Uroporphyrinogen decarboxylase (URO-D).
Probab=66.56 E-value=9.7 Score=18.03 Aligned_cols=11 Identities=18% Similarity=0.166 Sum_probs=5.6
Q ss_pred HCCCCCCEEEC
Q ss_conf 00121000110
Q gi|254780434|r 132 PTSPIGINLGA 142 (362)
Q Consensus 132 ~~~pi~vsI~~ 142 (362)
.+.|++..+++
T Consensus 134 ~~~plig~~~g 144 (337)
T pfam01208 134 DEVPLIGFVGG 144 (337)
T ss_pred CCCCEEEECCC
T ss_conf 99747986477
No 409
>PRK05473 hypothetical protein; Provisional
Probab=66.46 E-value=6.8 Score=19.06 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf 78999999999999998389977896169
Q gi|254780434|r 324 ISLPKRIIQGLSDFLNKENEVNFENIRGS 352 (362)
Q Consensus 324 p~~~~~I~~~L~~~l~~~G~~si~e~iG~ 352 (362)
..-+++|+...-+-|+++||+-|.+++|=
T Consensus 17 ~~~v~eiL~~Vy~AL~EKGYNPinQiVGY 45 (86)
T PRK05473 17 KKDVRETLTTVYNALEEKGYNPINQIVGY 45 (86)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 67899999999999998489808778845
No 410
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=66.01 E-value=10 Score=17.96 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH
Q ss_conf 88999998764498299980665553234577544632211356454246899999997408974899967889999999
Q gi|254780434|r 224 ELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDAL 303 (362)
Q Consensus 224 ~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~ 303 (362)
.+++ +..+.++|+|.|-+-|-. ...+++.-+...+++.+-++||| +.+.+.
T Consensus 206 ~l~q-~~~a~~~g~DiIlLDNms---------------------------~~~i~~av~~i~~~~~lEaSGgI-~~~ni~ 256 (290)
T PRK06559 206 SLAA-AEEAAAAGVDIIMLDNMS---------------------------LEQIEQAITLIAGRSRIECSGNI-DMTTIS 256 (290)
T ss_pred CHHH-HHHHHHCCCCEEEECCCC---------------------------HHHHHHHHHHHCCCEEEEEECCC-CHHHHH
T ss_conf 8999-999986699999987989---------------------------99999999985796799997899-899999
Q ss_pred HHHHCCCCEEEECH
Q ss_conf 99983999754527
Q gi|254780434|r 304 DKIMAGANLIQLYS 317 (362)
Q Consensus 304 e~l~aGAs~VQi~T 317 (362)
+|-..|.|.+-+++
T Consensus 257 ~yA~tGVD~IS~g~ 270 (290)
T PRK06559 257 RFRGLAIDYVSSGS 270 (290)
T ss_pred HHHHCCCCEEECCH
T ss_conf 99973999998882
No 411
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=64.97 E-value=10 Score=17.83 Aligned_cols=49 Identities=6% Similarity=0.093 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHH
Q ss_conf 6899999997408974899967889999999999839997545278770697899
Q gi|254780434|r 273 STIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLP 327 (362)
Q Consensus 273 al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~ 327 (362)
..+.|..+.+.++ +.+|+ -||+|.++..-....|.+.+|=| .|.-|--.
T Consensus 665 iv~aIiaLA~~Lg--L~VVA-EGVET~eQl~~L~~lGCd~~QGY---lFSkPLP~ 713 (728)
T PRK11829 665 IARIISCVSDVLK--VRVMA-EGVETEEQRQWLLEHGIQCGQGF---LFSPPLPR 713 (728)
T ss_pred HHHHHHHHHHHCC--CEEEE-ECCCHHHHHHHHHHCCCCEECCC---EECCCCCH
T ss_conf 9999999999879--96999-67980999999997699975468---42668999
No 412
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=64.82 E-value=10 Score=17.81 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=37.6
Q ss_pred HHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC---CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 999997408974899967889999999999839997545278770---697899999999999999838
Q gi|254780434|r 277 LAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY---EGISLPKRIIQGLSDFLNKEN 342 (362)
Q Consensus 277 i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~---~Gp~~~~~I~~~L~~~l~~~G 342 (362)
+..+.+..+.+..|+ +..|.+.+++.+...+||+.+-+--.++. +-|..-.-+..=.++|-.-.|
T Consensus 151 i~~~~~~~~~~tkIL-~ASiR~~~~v~~a~~~G~d~iTipp~v~~~l~~hp~T~~~~~~F~~Dw~~~~g 218 (222)
T PRK12656 151 LAEAINRENSNSKIL-AASFKNVAQVNKAFALGAQAVTAGPDVFEAAFAMPSIQKAVDDFGDDWEAIHG 218 (222)
T ss_pred HHHHHHHCCCCCEEE-EECCCCHHHHHHHHHCCCCEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 999998559996198-65268999999999869999985999999997490179999999999999739
No 413
>TIGR03555 F420_mer 5,10-methylenetetrahydromethanopterin reductase. Members of this protein family are 5,10-methylenetetrahydromethanopterin reductase, an F420-dependent enzyme of methanogenesis. It is restricted to the Archaea.
Probab=64.31 E-value=11 Score=17.75 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=18.1
Q ss_pred CCCCCCEEEECCEECCCCEEECCCC
Q ss_conf 8896311688873359974853468
Q gi|254780434|r 40 HSDPRLNTKVAGISLSNPLGMAAGY 64 (362)
Q Consensus 40 ~~~~~L~~~~~Gl~~~nPiglAaG~ 64 (362)
.+..+|.+-+.-.-+.||+.+|...
T Consensus 51 T~rI~lgtgv~~~~~r~P~~~A~~~ 75 (325)
T TIGR03555 51 TNTIKLGPGVTNPYTRSPAITASAI 75 (325)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHH
T ss_conf 7961689885457778999999999
No 414
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=64.12 E-value=11 Score=17.72 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=8.9
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 024777778899987641
Q gi|254780434|r 113 LGFNNAGYHTVFSRLSKI 130 (362)
Q Consensus 113 ~Gl~N~G~~~~~~~l~~~ 130 (362)
.|.|.+|.- +.+.|++.
T Consensus 104 ~G~NTD~~G-f~~~L~~~ 120 (289)
T PRK12548 104 TGHITDGLG-FVRNLREH 120 (289)
T ss_pred EEECCCHHH-HHHHHHHH
T ss_conf 987587799-99999980
No 415
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=64.02 E-value=11 Score=17.71 Aligned_cols=37 Identities=32% Similarity=0.437 Sum_probs=16.9
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCE
Q ss_conf 99999997408974899967889999999999839997
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANL 312 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~ 312 (362)
+.++++|+. .+++|||.+.|-.+.+++.+.+.+||+-
T Consensus 59 el~~~ir~~-~~~~piI~~T~~~~~~~~~~a~~~Ga~~ 95 (111)
T pfam00072 59 ELLRRIRRR-PPTTPVIVLTAHGDEEDAVEALKAGAND 95 (111)
T ss_pred HHHHHHHHC-CCCCEEEEEECCCCHHHHHHHHHCCCCE
T ss_conf 799999735-9998099997508999999999779877
No 416
>PRK08349 hypothetical protein; Validated
Probab=63.41 E-value=11 Score=17.64 Aligned_cols=11 Identities=18% Similarity=0.114 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q ss_conf 68999999974
Q gi|254780434|r 273 STIALAKIRQR 283 (362)
Q Consensus 273 al~~i~~i~~~ 283 (362)
.++.+.++-+.
T Consensus 181 ~~~~i~~~ee~ 191 (198)
T PRK08349 181 GLGEFEKILEE 191 (198)
T ss_pred CHHHHHHHHHH
T ss_conf 99999999997
No 417
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=62.68 E-value=9.6 Score=18.08 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=37.8
Q ss_pred HHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 999999983999754527877069789999999999999983899778961
Q gi|254780434|r 300 KDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIR 350 (362)
Q Consensus 300 ~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~i 350 (362)
+...+.|+.||+.+||--...-+|..-.++ .||.+.+ .|+.||+|+-
T Consensus 526 Eei~~~Il~ggn~~~i~~~A~~eGm~~LR~--SGL~Kvk--~GvTSlEEv~ 572 (577)
T TIGR02538 526 EEIAELILKGGNALQIAELAQKEGMRDLRQ--SGLEKVK--QGVTSLEEVL 572 (577)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCHHHHH--HHHHHHH--HCCCHHHHHH
T ss_conf 899999874898899999998725147999--9999997--3465289998
No 418
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183 Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) . For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=62.49 E-value=12 Score=17.53 Aligned_cols=22 Identities=9% Similarity=0.295 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 788999876410001210001104
Q gi|254780434|r 120 YHTVFSRLSKIQPTSPIGINLGAN 143 (362)
Q Consensus 120 ~~~~~~~l~~~~~~~pi~vsI~~~ 143 (362)
.+..++..++++-+.-|| ||+.
T Consensus 157 ~~~al~~~k~l~LdgLVI--IGGD 178 (566)
T TIGR02477 157 FAKALETAKKLKLDGLVI--IGGD 178 (566)
T ss_pred HHHHHHHHHHHCCCEEEE--ECCC
T ss_conf 999999987608964899--7479
No 419
>COG3514 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.59 E-value=12 Score=17.43 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=26.9
Q ss_pred HHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999839997545278770697899999999999999838
Q gi|254780434|r 299 TKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKEN 342 (362)
Q Consensus 299 ~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G 342 (362)
-.||++++.+| |++.=.|||+.|.+||.++|
T Consensus 63 DaDVle~fra~-------------GkGwQtRiN~aLR~~~~~~~ 93 (93)
T COG3514 63 DADVLEKFRAG-------------GKGWQTRINAALRQYMAAHG 93 (93)
T ss_pred CHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHCC
T ss_conf 49999998747-------------96088999999999998549
No 420
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=60.85 E-value=12 Score=17.34 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=58.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--
Q ss_conf 517865057777488899999876449--8299980665553234577544632211356454246899999997408--
Q gi|254780434|r 210 VPIFLKISPDLSEEELDDIAVEVLSHK--VEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVG-- 285 (362)
Q Consensus 210 ~Pi~vKLsPd~~~~~i~~ia~~a~~~g--~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~-- 285 (362)
-|+++=+- ...+++.+..+++.+.| ..||=+ .|..+..+.--.......+-.+- +-..-.+++++|+.++
T Consensus 209 ~~~i~LvD--~~~d~i~~al~va~~~g~~L~gVRL-DTsg~l~d~~~~~~~~~~~~~~~---~Gv~~~li~~vR~~LD~a 282 (355)
T PRK07188 209 DELVALID--YNNDVITDALKVAREFGDKLKGVRV-DTSKNLIDKYFIRNPEVLGTFDP---YGVNPYLIFALRKALDEN 282 (355)
T ss_pred CCEEEEEE--CCCHHHHHHHHHHHHHCCCCCEEEE-CCCCCHHHCCCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHC
T ss_conf 98799995--8857999999999983866778997-78762222000112234565222---574899999999999767
Q ss_pred --CCEEEEEECCCCCHHHHHHHHHCCC--CEEEECHHHH
Q ss_conf --9748999678899999999998399--9754527877
Q gi|254780434|r 286 --PKIAIIGTGGISSTKDALDKIMAGA--NLIQLYSAMI 320 (362)
Q Consensus 286 --~~i~IIg~GGI~s~~Da~e~l~aGA--s~VQi~Tali 320 (362)
.++.|+.+||+ +.+...++..+|| |...|+|.+.
T Consensus 283 G~~~vKIvaSggl-de~~I~~l~~~gapID~fGVGt~l~ 320 (355)
T PRK07188 283 GGKHVKIIVSSGF-DEKKIKEFEKQNVPVDIYGVGSSLL 320 (355)
T ss_pred CCCCCEEEEECCC-CHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 9987179996899-9999999997799701895067667
No 421
>PRK13238 tnaA tryptophanase; Provisional
Probab=60.83 E-value=12 Score=17.34 Aligned_cols=159 Identities=17% Similarity=0.248 Sum_probs=79.7
Q ss_pred HHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC-------------CC
Q ss_conf 65554206-75526983033365322110000234321111224445565531268851786505-------------77
Q gi|254780434|r 154 VSGIRLFF-TIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKIS-------------PD 219 (362)
Q Consensus 154 ~~~~~~~~-~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLs-------------Pd 219 (362)
...+++.+ +-+.++-+-+.| |+.|++..+ +..+ .++.+ ......+|+++--+ |-
T Consensus 167 e~~i~~~g~~~I~~v~~tiTn-N~~GGQPVS----m~Ni-r~v~~------la~~~~ip~~lDaaRfaENAyFIk~RE~g 234 (461)
T PRK13238 167 EALIEEVGADNIPFIVMTITN-NSAGGQPVS----MANL-RAVYE------IAKKYGIPVVLDAARFAENAYFIKQREPG 234 (461)
T ss_pred HHHHHHHCCCCCCEEEEEEEE-CCCCCCCCC----HHHH-HHHHH------HHHHCCCCEEEEHHHHHHHHHHHHHCCCC
T ss_conf 999987384465489999862-687881646----8999-99999------99982995998656676645788732531
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECC------------CCC--------CCCCCCCCCCCCCCCCCCCCCCHHHHH----
Q ss_conf 77488899999876449829998066------------555--------323457754463221135645424689----
Q gi|254780434|r 220 LSEEELDDIAVEVLSHKVEGIIVSNT------------TLS--------RKGVQCSDNHEQDGGLSGSPLFLKSTI---- 275 (362)
Q Consensus 220 ~~~~~i~~ia~~a~~~g~dGiv~~NT------------~~~--------~~~~~~~~~~~~~GGlSG~~i~~~al~---- 275 (362)
..+.-+.+|++..-.. +||++++-- +.+ +.......+-..+|||||+-+.-++..
T Consensus 235 Y~d~si~eI~rEmfs~-aDg~tmSaKKD~~vniGG~l~~~d~~~l~~~~~~~~i~~EGf~TYGGlaGRDmeAlAvGL~E~ 313 (461)
T PRK13238 235 YKDKSIKEITREMFSY-ADGLTMSAKKDAMVNIGGLLCFKDDSDLYTKCRTLCILYEGFPTYGGLAGRDMEALAVGLYEG 313 (461)
T ss_pred CCCCCHHHHHHHHHHH-HHEEEEEECCCCEECCCCEEEECCHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHCCHHHH
T ss_conf 2579999999999845-237999833012104422899667599999987442420587566883387799997357876
Q ss_pred -----------HHHHHHHHC-CCCEEEEE-ECCCCCHHHH-------------------HHHHHCCCCEEEECHHHHCCC
Q ss_conf -----------999999740-89748999-6788999999-------------------999983999754527877069
Q gi|254780434|r 276 -----------ALAKIRQRV-GPKIAIIG-TGGISSTKDA-------------------LDKIMAGANLIQLYSAMIYEG 323 (362)
Q Consensus 276 -----------~i~~i~~~~-~~~i~IIg-~GGI~s~~Da-------------------~e~l~aGAs~VQi~Tali~~G 323 (362)
.|.++-+.+ ...+||+- .||=--.-|| .-|+.+|-..|.++|-+.-+.
T Consensus 314 ~d~dyl~~Ri~qv~yLg~~L~~~GVPvv~P~GGHAv~iDA~~fLPhip~~qfPa~aLa~eLY~~~GIR~vEiGs~~~grd 393 (461)
T PRK13238 314 MDEDYLAYRIAQVEYLGEGLEEAGVPVVTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRAVEIGSLLLGRD 393 (461)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEEHHHHCCCCCHHHCCHHHHHHHHHHHCCCCEEEECCHHCCCC
T ss_conf 07799997799999999999977997056798518997467856799814481899999999972955787500120548
Q ss_pred HH
Q ss_conf 78
Q gi|254780434|r 324 IS 325 (362)
Q Consensus 324 p~ 325 (362)
|.
T Consensus 394 p~ 395 (461)
T PRK13238 394 PD 395 (461)
T ss_pred CC
T ss_conf 88
No 422
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase; InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase . ; GO: 0008924 malate dehydrogenase (acceptor) activity, 0006099 tricarboxylic acid cycle.
Probab=60.66 E-value=7.4 Score=18.84 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=48.9
Q ss_pred CCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 78998862688425554100002477777889998764100012100011045424678877655542067552698303
Q gi|254780434|r 92 QAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINI 171 (362)
Q Consensus 92 ~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNi 171 (362)
...||-|.+ |++-++++++|+.+|.+.++ +.|+.-+.- ..++++.+.|..-+|-.=.+.-|.+-+|.
T Consensus 102 ~FiNpVPH~-----------Sfv~G~~~v~YLk~Ry~AL~-~~~lF~~m~-y~~d~~~~a~~lPLM~~gR~~~~pvA~~~ 168 (487)
T TIGR01320 102 SFINPVPHV-----------SFVRGSDGVAYLKKRYEALK-KHPLFEGME-YSEDKATFAEWLPLMAKGRDFSEPVAANW 168 (487)
T ss_pred CCCCCCCCC-----------CCCCCHHHHHHHHHHHHHHH-CCCCCCCCC-EECCHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf 022788852-----------02657066799999999861-784313750-00586899874254568768863433212
Q ss_pred CC
Q ss_conf 33
Q gi|254780434|r 172 SS 173 (362)
Q Consensus 172 SC 173 (362)
+-
T Consensus 169 ~~ 170 (487)
T TIGR01320 169 VA 170 (487)
T ss_pred HC
T ss_conf 04
No 423
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=59.75 E-value=13 Score=17.21 Aligned_cols=56 Identities=16% Similarity=0.065 Sum_probs=41.4
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8974899967889999999999839997545278770697899999999999999838997
Q gi|254780434|r 285 GPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVN 345 (362)
Q Consensus 285 ~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~s 345 (362)
+++.-..=+||| |+=-+|.++.-|+...-++ .|-|+... +....|.+.|.+.++.+
T Consensus 179 ~Gk~l~LlSGGi-SPVAa~~mmKRG~~v~~vh---f~~~~~~~-~kv~~l~~~L~~y~~~~ 234 (310)
T PRK08384 179 QGKMVGLLSDEL-SAVAIFLMMKRGVEVIPVH---IGMGEKNL-EKVRKLWNQLKKYSYGS 234 (310)
T ss_pred CCCEEEEECCCC-CHHHHHHHHHCCCEEEEEE---ECCCHHHH-HHHHHHHHHHHHHCCCC
T ss_conf 884899953886-3999999985698799998---56887899-99999999999867998
No 424
>TIGR02617 tnaA_trp_ase tryptophanase; InterPro: IPR013440 Proteins in this entry belong to the beta-eliminating lyase family and are thought to act as tryptophanases (4.1.99.1 from EC) (also known as L-tryptophan indole-lyases). The genes encoding these proteins are, as a rule, found with a tryptophanase leader peptide TnaC (IPR013439 from INTERPRO) encoded upstream. ; GO: 0009034 tryptophanase activity, 0006568 tryptophan metabolic process.
Probab=59.74 E-value=13 Score=17.21 Aligned_cols=163 Identities=16% Similarity=0.187 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC-----------
Q ss_conf 8877655542067-5526983033365322110000234321111224445565531268851786505-----------
Q gi|254780434|r 150 ILDYVSGIRLFFT-IASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKIS----------- 217 (362)
Q Consensus 150 ~~dy~~~~~~~~~-~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLs----------- 217 (362)
+++..+.+.+.++ .+-|+.--|.| |..|+ .|..|..+ +|+.+. ....++||++-=+
T Consensus 169 l~~LE~~I~E~G~~NV~~Iv~TiTc-NSaGG----QPvSlANl-KAvY~I------Ak~yDIPVv~DSARFaENAyFIkQ 236 (468)
T TIGR02617 169 LEELEKTIAEAGPDNVPYIVTTITC-NSAGG----QPVSLANL-KAVYEI------AKKYDIPVVMDSARFAENAYFIKQ 236 (468)
T ss_pred HHHHHHHHHCCCCCCCEEEEEEEEE-CCCCC----CHHHHHHH-HHHHHH------HHHCCCCEEECCHHHHHHHHHHHH
T ss_conf 7888788750285663277775431-68968----42678888-999999------864599868623022334577775
Q ss_pred --CCCCHHHHHHHHHHHHHCCCCEEEEECC---CCCCCCCC-------------------CCCCCCCCCCCCCCCCCHHH
Q ss_conf --7777488899999876449829998066---55532345-------------------77544632211356454246
Q gi|254780434|r 218 --PDLSEEELDDIAVEVLSHKVEGIIVSNT---TLSRKGVQ-------------------CSDNHEQDGGLSGSPLFLKS 273 (362)
Q Consensus 218 --Pd~~~~~i~~ia~~a~~~g~dGiv~~NT---~~~~~~~~-------------------~~~~~~~~GGlSG~~i~~~a 273 (362)
-+-.+--+.+|.+...++ +|+++++-- ....-++. ...+-..+|||.|...-.+|
T Consensus 237 RE~~Y~~~si~~I~~E~Y~Y-aD~L~MSAKKD~~V~~GGL~C~~Ddsf~D~y~E~RT~CV~~EGF~TYGGL~G~~ME~LA 315 (468)
T TIGR02617 237 REKEYENWSIEQITREMYKY-ADMLAMSAKKDALVNMGGLLCFKDDSFFDVYTEVRTLCVVQEGFPTYGGLEGGAMERLA 315 (468)
T ss_pred HHHHHCCCCHHHHHHHHHHH-CCHHHHHHCCCCCCCCCCEEEECCCCHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHH
T ss_conf 33000033188988886542-02011010125400047625520352245533312223214675555777604578887
Q ss_pred HHH---------------HHHHHHHCC-CCEEEEE-ECCCCCHHHH-------------------HHHHHCCCCEEEECH
Q ss_conf 899---------------999997408-9748999-6788999999-------------------999983999754527
Q gi|254780434|r 274 TIA---------------LAKIRQRVG-PKIAIIG-TGGISSTKDA-------------------LDKIMAGANLIQLYS 317 (362)
Q Consensus 274 l~~---------------i~~i~~~~~-~~i~IIg-~GGI~s~~Da-------------------~e~l~aGAs~VQi~T 317 (362)
..+ |.++-..+. -.+++=- .||=--.-|| .-|..||-.+|.|+|
T Consensus 316 vGL~~GM~~~~LAYRI~QV~YL~~~L~~~Gv~~Q~P~GGHA~FVDA~~LLPHIPa~QFPA~AL~~ELY~~AGIRaVEIGS 395 (468)
T TIGR02617 316 VGLYDGMNEDYLAYRINQVAYLVNGLEDIGVVIQQPAGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGS 395 (468)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECH
T ss_conf 51453003432778899999998557667805764998637676311027888865554888855567761711453101
Q ss_pred HHHCCCHH
Q ss_conf 87706978
Q gi|254780434|r 318 AMIYEGIS 325 (362)
Q Consensus 318 ali~~Gp~ 325 (362)
-|.=++|.
T Consensus 396 lLLGRDP~ 403 (468)
T TIGR02617 396 LLLGRDPK 403 (468)
T ss_pred HHHCCCCC
T ss_conf 42167887
No 425
>TIGR00284 TIGR00284 dihydropteroate synthase-related protein; InterPro: IPR005236 The proteins of this family have been found so far only in the four archaeal species. The central region of the proteins shows considerable homology to the amino-terminal half of dihydropteroate synthases. .
Probab=58.95 E-value=13 Score=17.13 Aligned_cols=116 Identities=15% Similarity=0.199 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE-EEECCCCCHHH
Q ss_conf 88899999876449829998066555323457754463221135645424689999999740897489-99678899999
Q gi|254780434|r 223 EELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAI-IGTGGISSTKD 301 (362)
Q Consensus 223 ~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~I-Ig~GGI~s~~D 301 (362)
..+.+.++.+...|++=+++ +-++.|.. .||-| +--|...-+++++... ++|| .|++=|..--|
T Consensus 288 ~~l~~~vkkl~~~G~~K~~a-------DP~LsPpl---~gGCs----l~eSii~~r~~~~~l~-d~Pl~fg~~NVtEl~d 352 (529)
T TIGR00284 288 KELAEAVKKLKDSGYEKVVA-------DPVLSPPL---RGGCS----LVESIIAFRRVKKLLK-DVPLLFGVANVTELVD 352 (529)
T ss_pred HHHHHHHHHHHHCCCCEEEE-------CCCCCCCC---CCCHH----HHHHHHHHHHHHHHHC-CCCEEEEHHHHHHHHH
T ss_conf 89999999998669846998-------66568610---01314----8899999999998726-6853320233554332
Q ss_pred H----------HHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
Q ss_conf 9----------9999839997545278770697899999999999999838997789616975
Q gi|254780434|r 302 A----------LDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEVNFENIRGSYT 354 (362)
Q Consensus 302 a----------~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~si~e~iG~~~ 354 (362)
| .=-..+|||..-+-=+ -++-.+-..++...-+-.--.+--.|+-..+|..+
T Consensus 353 ADS~GvnALLaaia~E~Gasil~~~E~-s~K~~~S~~E~~~A~km~s~A~k~nsLPkdig~~L 414 (529)
T TIGR00284 353 ADSIGVNALLAAIAAELGASILYVVED-SAKSKFSTKEVAEAAKMISVAKKRNSLPKDIGIDL 414 (529)
T ss_pred CCHHHHHHHHHHHHHHHHHHHEEEECC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCC
T ss_conf 051138999999998752132000025-65322338999999999999986357874100002
No 426
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=58.36 E-value=14 Score=17.06 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHCC-------CCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC-CCHHHHHHHHHHHHHHHHHC
Q ss_conf 4246899999997408-------974899967889999999999839997545278770-69789999999999999983
Q gi|254780434|r 270 FLKSTIALAKIRQRVG-------PKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY-EGISLPKRIIQGLSDFLNKE 341 (362)
Q Consensus 270 ~~~al~~i~~i~~~~~-------~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~-~Gp~~~~~I~~~L~~~l~~~ 341 (362)
.|..+..++.-.+.++ .++|.++.|||.- +-+-+-+..|.+-|-|.+|+-. ..|..+ .+.+.+.|.++
T Consensus 342 ~PQGL~rL~~y~~l~~~~p~~~~~~~PtVAIGGI~~-~r~~~V~~tGV~siAVV~AIT~A~dp~~a---v~~f~~~~~~~ 417 (439)
T PRK12290 342 KPQGLVRLALYQKLIDTIPYTEQTGFPTVAIGGIDQ-SNAEQVWQCGVSSLAVVRAITLAEDPKLV---IEFFDQVMAEN 417 (439)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCH-HHHHHHHHHCCCCEEEEEHHHCCCCHHHH---HHHHHHHHCCC
T ss_conf 872499999999985135543457998388977168-88899998199817988633328998999---99999872424
Q ss_pred C
Q ss_conf 8
Q gi|254780434|r 342 N 342 (362)
Q Consensus 342 G 342 (362)
-
T Consensus 418 ~ 418 (439)
T PRK12290 418 Q 418 (439)
T ss_pred C
T ss_conf 2
No 427
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=58.23 E-value=14 Score=17.05 Aligned_cols=170 Identities=17% Similarity=0.180 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
Q ss_conf 24678877655542067552698303336532211000023432111122444556553126885178650577774888
Q gi|254780434|r 146 SKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEEL 225 (362)
Q Consensus 146 s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i 225 (362)
|+....|....+ ...+||+.+.+= ..++ .+...|.........+++|+.|+--...-+++
T Consensus 174 teKD~~dl~f~~---~~gvD~vA~SFV----------r~~~-------Dv~~~R~~l~~~~~~~~~iiaKIE~~eav~Nl 233 (477)
T COG0469 174 TEKDKEDLKFGL---EQGVDFVALSFV----------RNAE-------DVEEVREILAETGGRDVKIIAKIENQEAVDNL 233 (477)
T ss_pred CCCCHHHHHHHH---HCCCCEEEEECC----------CCHH-------HHHHHHHHHHHHCCCCCEEEEEECCHHHHHHH
T ss_conf 834788899798---659988999666----------8888-------99999999998379872499950587777579
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC---------
Q ss_conf 99999876449829998066555323457754463221135645424689999999740897489996788---------
Q gi|254780434|r 226 DDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGI--------- 296 (362)
Q Consensus 226 ~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI--------- 296 (362)
++++++ .|||-+. |-++...... .--|...+.+-+.....+ +..|.++==-
T Consensus 234 deIi~~-----SDGIMVA-----RGDLGVEip~---------e~Vp~~QK~iI~~~~~~g-kpVItATQMLeSMi~np~P 293 (477)
T COG0469 234 DEIIEA-----SDGIMVA-----RGDLGVEIPL---------EEVPIIQKRIIRKARRAG-KPVITATQMLESMIENPRP 293 (477)
T ss_pred HHHHHH-----CCCEEEE-----ECCCCCCCCH---------HHHHHHHHHHHHHHHHCC-CCEEEEECCHHHHHHCCCC
T ss_conf 999986-----3832998-----6565053477---------873699999999998759-9609970638888408998
Q ss_pred --CCHHHHHHHHHCCCCEEEECHHHHCCC--H----HHHHHHHHHHHHHHH---------HCCCCCHHHHHCCCCHH
Q ss_conf --999999999983999754527877069--7----899999999999999---------83899778961697526
Q gi|254780434|r 297 --SSTKDALDKIMAGANLIQLYSAMIYEG--I----SLPKRIIQGLSDFLN---------KENEVNFENIRGSYTEY 356 (362)
Q Consensus 297 --~s~~Da~e~l~aGAs~VQi~Tali~~G--p----~~~~~I~~~L~~~l~---------~~G~~si~e~iG~~~~~ 356 (362)
....|+..-+.-|+|+|++.--- -.| | ....+|..+-.+.+. .....++.|.+..++.+
T Consensus 294 TRAEvsDVanAvlDGtDAvMLS~ET-A~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~e~ia~aa~~ 369 (477)
T COG0469 294 TRAEVSDVANAVLDGTDAVMLSGET-AAGKYPVEAVATMARIAKEAEKELPDNQLLRFRVDPPDSSITEAIALAAVD 369 (477)
T ss_pred CCHHHHHHHHHHHHCCCEEEECHHH-HCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 7100568889987277435603202-068787999999999999874154223333320255446389999999999
No 428
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; InterPro: IPR012691 This entry represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see IPR012689 from INTERPRO). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the members of this family are found in the operon for 4-hydroxyphenylacetic acid catabolism.; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process, 0005737 cytoplasm.
Probab=58.19 E-value=14 Score=17.04 Aligned_cols=209 Identities=16% Similarity=0.169 Sum_probs=91.3
Q ss_pred CCEEECCCCCC--CHHHHHHHHHCCCCEEECCCCCCCCCCCCC--CCC------------EEEEECCCCCEEECCCCCCC
Q ss_conf 97485346888--677988874036752410200136878998--862------------68842555410000247777
Q gi|254780434|r 56 NPLGMAAGYDK--NAEVPIELLKLGFGFVEIGTVTPHPQAGNP--RPR------------VFRLTKDRAIINKLGFNNAG 119 (362)
Q Consensus 56 nPiglAaG~dk--~~~~~~~l~~~G~G~v~~ktit~~p~~GNp--~PR------------~~r~~~~~~iiN~~Gl~N~G 119 (362)
.||=.-.-+|. .-+.+.+...-|--+|.++..|-+|..--- |-| +=-.|..+++ -
T Consensus 10 TPF~~nG~~D~~~~~~L~E~~~~~G~H~~SV~GT~GEP~~~T~EER~~~~E~~~~~~~GR~P~~PGTG~~---------~ 80 (294)
T TIGR02313 10 TPFKVNGDLDEKKLRRLVEFVVENGSHAVSVTGTSGEPSSLTLEERKRVIEVVLDTVAGRVPVIPGTGAL---------R 80 (294)
T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC---------C
T ss_conf 8855267521888876754321487115760565698865427889999999997616841223788765---------4
Q ss_pred HHHHHHHHHHHH---HC-CCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 788999876410---00-12100011045424678877655542067552698303336532211000023432111122
Q gi|254780434|r 120 YHTVFSRLSKIQ---PT-SPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHV 195 (362)
Q Consensus 120 ~~~~~~~l~~~~---~~-~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v 195 (362)
.|.-++--++.+ .+ .-|||= -++|+.++++.||-+.+...-+..-.+.-|| || |.-++-+ +
T Consensus 81 ~~ETl~~T~~A~E~GA~~AMVIVP-YY~KPNQE~LY~~F~~VA~~VPD~P~~IYNI-----PG-R~~~~~~--------~ 145 (294)
T TIGR02313 81 LDETLELTKKAKEAGADAAMVIVP-YYVKPNQEALYDYFKEVADAVPDIPLLIYNI-----PG-RAAVEIE--------V 145 (294)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEECC-----CC-CCCCCCC--------H
T ss_conf 035788888888506772157744-7779875678999999975238975788528-----88-5434112--------1
Q ss_pred HHHHHHHHHHCCCCCE--EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC-CCCCCCC-CCCCH
Q ss_conf 4445565531268851--786505777748889999987644982999806655532345775446-3221135-64542
Q gi|254780434|r 196 MQTREEEKIKTGKFVP--IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHE-QDGGLSG-SPLFL 271 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~P--i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~-~~GGlSG-~~i~~ 271 (362)
+ ..-+-.++.| |.+|=| ..+++-+-+...++|=|.++-+-- ..+..+-... ..|.+|- .-+.|
T Consensus 146 K-----T~~RL~~D~PNIVG~K~S----~KDlE~~~~~lL~~GRDFL~F~G~----E~L~~PMl~~G~~G~I~ATAN~~P 212 (294)
T TIGR02313 146 K-----TVARLVKDFPNIVGLKES----SKDLEYLSRLLLEAGRDFLLFSGL----ELLTLPMLALGAVGSIAATANVLP 212 (294)
T ss_pred H-----HHHHHHHCCCCCCCCCCC----CHHHHHHHHHHHHCCCHHHHHHHH----HHHHHHHHHHCCHHHHHHHHCCCC
T ss_conf 4-----555554217751115554----202889999998617346566317----888667887312123555405770
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 4689999999740897489996788999999999983999
Q gi|254780434|r 272 KSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGAN 311 (362)
Q Consensus 272 ~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs 311 (362)
.. |+.+.+.+ -.|-+..++|-.=+|+.=-+
T Consensus 213 K~---VA~l~~~~-------~~GD~~~A~~LHF~Ll~~N~ 242 (294)
T TIGR02313 213 KK---VALLHEKA-------LEGDIKRARDLHFELLELND 242 (294)
T ss_pred HH---HHHHHHHH-------HCCCHHHHHHHHHHHHHHHH
T ss_conf 67---99999887-------51653468899999987546
No 429
>TIGR00507 aroE shikimate 5-dehydrogenase; InterPro: IPR011342 The shikimate pathway links the metabolism of carbohydrates to the biosynthesis of aromatic compounds and is essential for the biosynthesis of aromatic amino acids and other aromatic compounds in bacteria, eukaryotic microorganisms and plants . It is a seven-step pathway which converts phosphoenolpyruvate and erythrose 4-phosphate to chorismate, the common precursor for the synthesis of folic acid, ubiquinone, vitamins E and K, and aromatic amino acids. Since this pathway is absent in metazoans, which must therefore obtain the essential amino acids phenylalanine and tryptophan from their diet, the enzymes in this pathway are important targets for the development of novel herbicides and antimicrobial compounds. This entry represents shikimate 5-dehydrogenases from prokaryotes and functionally equivalent C-terminal domains from larger, multifunctional proteins, the majority of which have an N-terminal quinate dehydrogenase domain. These multifunctional proteins occur in plants, chlamydiae, planctomycetes and a limited number of marine proteobacteria. Shikimate 5-dehydrogenase catalyses the fourth step of the shikimate pathway, which is the NADP-dependent reduction of 3-dehydroshikimate to shikimate . Structural studies suggests that some shikimate dehydrogenases are monmers while others form homodimers , . Each shikimate dehydrogenase monomer forms a compact two-domain alpha/beta sandwich with a deep interdomain cleft. The N-terminal substrate-binding domain forms a three layer alpha-beta-alpha sandwich, while the C-terminal NADP-binding domain forms a nearly typical Rossman fold. The active site is thought to be located within the interdomain cleft, with substrate binding causing a conformational change which closes the active site cleft, forming a productive active site.; GO: 0004764 shikimate 5-dehydrogenase activity, 0050661 NADP binding.
Probab=57.80 E-value=14 Score=17.00 Aligned_cols=94 Identities=20% Similarity=0.283 Sum_probs=41.6
Q ss_pred HHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHH--HHHHH-HHHHHHCC-CCCCEEECCCC
Q ss_conf 9888740367524102001368789988626884255541000024777778--89998-76410001-21000110454
Q gi|254780434|r 70 VPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYH--TVFSR-LSKIQPTS-PIGINLGANKD 145 (362)
Q Consensus 70 ~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~--~~~~~-l~~~~~~~-pi~vsI~~~~~ 145 (362)
.++.+++.-=-+-..|+| | .+.|+.++ -+ +|.|.+|.- .-+++ |.+.+++. .+++=-|+.
T Consensus 69 ~~~~~De~~~~A~~~gAV-------N---Tl~~le~g-~l---~GyNTDG~G~~~~L~~~l~~l~~~~~~li~GAGGA-- 132 (286)
T TIGR00507 69 AFQFLDEIDESAKLIGAV-------N---TLKKLEDG-KL---VGYNTDGIGLVSSLEQELSKLKPNQRVLIIGAGGA-- 132 (286)
T ss_pred HHHHHCCCCHHHHHHCCC-------C---CCEEEECC-EE---EEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCHH--
T ss_conf 998841524567761124-------5---10243177-68---88617604578888887403689977999942867--
Q ss_pred CHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 24678877655542067-55269830333653221100002343211112
Q gi|254780434|r 146 SKDFILDYVSGIRLFFT-IASYFTINISSPNTPGLRSLQKKKNLERLLIH 194 (362)
Q Consensus 146 s~~~~~dy~~~~~~~~~-~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~ 194 (362)
..++. ..+ ... ....+..| |.....+.|.+.+..
T Consensus 133 -a~a~a--~~L---~~~t~~~~~i~N---------RT~~ka~~La~~~~~ 167 (286)
T TIGR00507 133 -AKAVA--LEL---LKATDCNVIIAN---------RTVEKAEELAERFQR 167 (286)
T ss_pred -HHHHH--HHH---HHHCCCEEEEEE---------CCHHHHHHHHHHHHH
T ss_conf -89999--999---860099789982---------877899999999898
No 430
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=57.79 E-value=14 Score=17.00 Aligned_cols=80 Identities=13% Similarity=0.214 Sum_probs=38.8
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 75526983033365322110000234321111224445565531268851786505777748889999987644982999
Q gi|254780434|r 162 TIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGII 241 (362)
Q Consensus 162 ~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv 241 (362)
+..+.-.+.++||--.|.........+..+++.+........ +...++=++ -+++.+..++.++-+.+.+.|++.++
T Consensus 113 ~~~~~pvi~v~tpgF~Gs~~~Gy~~a~~aii~~~~~~~~~~~-~~~~~iNli--~g~~~~pgDl~eik~ll~~~Gl~~~i 189 (417)
T cd01966 113 ELADVPVVYVSTPDFEGSLEDGWAAAVEAIIEALVEPGSRTV-TDPRQVNLL--PGAHLTPGDVEELKDIIEAFGLEPII 189 (417)
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCEEEC--CCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 557984685168764563788999999999987436878777-778835881--56468877799999999982995698
Q ss_pred EEC
Q ss_conf 806
Q gi|254780434|r 242 VSN 244 (362)
Q Consensus 242 ~~N 244 (362)
+..
T Consensus 190 lpD 192 (417)
T cd01966 190 LPD 192 (417)
T ss_pred ECC
T ss_conf 236
No 431
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=57.68 E-value=14 Score=16.99 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=21.0
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 999999974089748999678899999999998399975452
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLY 316 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~ 316 (362)
+.|..++.+.+ .+-+=++|||+- +.+.+|-..|=|.+-++
T Consensus 222 ~av~~~~~~~p-~~~~EaSGGitl-~n~~~ya~~gVD~IS~G 261 (276)
T TIGR00078 222 EAVELLKGRNP-NVLVEASGGITL-DNIEEYAETGVDVISSG 261 (276)
T ss_pred HHHHHHHHCCC-EEEEEEECCCCH-HHHHHHHHCCCCEEECC
T ss_conf 99999970299-089998369987-89999840897588327
No 432
>PRK12376 putative translaldolase; Provisional
Probab=57.65 E-value=14 Score=16.98 Aligned_cols=191 Identities=14% Similarity=0.202 Sum_probs=83.9
Q ss_pred CHHHHHHHHHCCC-CEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 6779888740367-524102001368789988626884255541000024777778899987641000121000110454
Q gi|254780434|r 67 NAEVPIELLKLGF-GFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQPTSPIGINLGANKD 145 (362)
Q Consensus 67 ~~~~~~~l~~~G~-G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~~~pi~vsI~~~~~ 145 (362)
|.+.++.+.+.|+ .+|+| || .+. -.-|.++ .+.+.+.+.+.-.+.|+.+-+.+ +
T Consensus 16 dl~eI~~~~~~g~i~GVTT----------NP--sLl---------~k~G~~d--~~~~~~~i~~~i~~~~is~EV~~--~ 70 (238)
T PRK12376 16 DLEEMLKAYKNPLVKGFTT----------NP--SLM---------KKAGITD--YKAFAKEVLAEIPDYPISFEVFA--D 70 (238)
T ss_pred CHHHHHHHHCCCCCCEEEC----------CH--HHH---------HHCCCCC--HHHHHHHHHHHCCCCCEEEEEEC--C
T ss_conf 9999999962899157907----------88--999---------8669997--89999999963899877999956--8
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
Q ss_conf 24678877655542067552698303336532211000023432111122444556553126885178650577774888
Q gi|254780434|r 146 SKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDLSEEEL 225 (362)
Q Consensus 146 s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i 225 (362)
+.+.+ .+-.+.+....+-+.+-+=|-|+.|.. . +..+.. . ....+++-+-+= .+..|.
T Consensus 71 ~~~~m---i~qA~~l~~~~~nv~VKIP~t~~~G~~------~----~~~ik~-L------~~~Gi~vnvTai--fs~~Qa 128 (238)
T PRK12376 71 DLETM---EKEAEILASLGENVYVKIPITNTKGES------T----IPLIKK-L------SADGIKLNVTAI--FTIEQV 128 (238)
T ss_pred CHHHH---HHHHHHHHHHCCCEEEEECCCCCCHHH------H----HHHHHH-H------HHCCCCEEEEEE--ECHHHH
T ss_conf 77889---999999997589779997785755189------9----999999-9------887996689998--279999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
Q ss_conf 99999876449829998066555323457754463221135645424689999999740897489996788999999999
Q gi|254780434|r 226 DDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDK 305 (362)
Q Consensus 226 ~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~ 305 (362)
...+++....++. ++. .-..|..- . |..|-++. +.+..+.+..+ +..|++ ..|.+.+++.+.
T Consensus 129 ~~a~~A~a~~~a~-yvS--pfvGRi~D--------~-G~Dg~~~i----~~~~~i~~~~~-~tkILa-ASiR~~~~v~~a 190 (238)
T PRK12376 129 KEVVDALTPGVPS-IVS--VFAGRIAD--------T-GVDPLPLM----KEALKICHQKP-GVELLW-ASPRELYNIIQA 190 (238)
T ss_pred HHHHHHCCCCCCE-EEE--EECCHHHH--------C-CCCCHHHH----HHHHHHHHCCC-CEEEEE-EECCCHHHHHHH
T ss_conf 9999852777882-775--12130865--------5-99827999----99999984288-749999-714888999999
Q ss_pred HHCCCCEEEECHHHHCC
Q ss_conf 98399975452787706
Q gi|254780434|r 306 IMAGANLIQLYSAMIYE 322 (362)
Q Consensus 306 l~aGAs~VQi~Tali~~ 322 (362)
..+|||.|-+--.++-+
T Consensus 191 ~~~GadiiTipp~vl~k 207 (238)
T PRK12376 191 DQLGCDIITVTADILKK 207 (238)
T ss_pred HHCCCCEEECCHHHHHH
T ss_conf 98699999849999998
No 433
>TIGR02317 prpB methylisocitrate lyase; InterPro: IPR012695 Propionate is the second most abundant low molecular mass carbon source found in soil, being generated by the degradation of several amino acids, fementation of crabohydrates and the oxidation of odd-chain fatty acids. Many different organisms are capable of metabolising propionate and several distinct pathways for utilising this compound exist, all of which begin with its activation to propionyl-CoA . Many bacteria metabolise propionate to pyruvate by the 2-methylcitric acid cycle. In the first step, catalysed by methycitrate synthase, oxaloacetate and propionyl-CoA are condensed to form 2-methylcitrate and CoA. The 2-methylcitrate is subsequently converted to 2-methylisocitrate by the combined actions of a dehydratase and an aconitase. In the final step, 2-methylisocitrate lyase cleaves a C-C bond within this compound to form succinate and pyruvate. The succinate is further oxidised to oxaloacetate which re-enters the cycle, while the pyruvate can be used further for either energy generation or biomass synthesis. Proteins in this entry are mostly 2-methylisocitrate lyases. Some of them have been annotated (incorrectly it seems) as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. Structural studies indicate that these enzymes belong to the isocitrate lyase family, binding a Mg(2+) cofactor and forming a TIM barrel fold , . As with other enzymes in this family, substrate-binding induces a conformational change that prevents solvent access to the active site and which is important for catalysis. .
Probab=57.62 E-value=14 Score=16.98 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=23.9
Q ss_pred EECCCCCEE-ECCCCCCCH---HHHHHHHHHHH--HCCCCCCEE
Q ss_conf 425554100-002477777---88999876410--001210001
Q gi|254780434|r 103 LTKDRAIIN-KLGFNNAGY---HTVFSRLSKIQ--PTSPIGINL 140 (362)
Q Consensus 103 ~~~~~~iiN-~~Gl~N~G~---~~~~~~l~~~~--~~~pi~vsI 140 (362)
|-+..++-| +||+|..|+ +.+..+.++.- -+.|++|=+
T Consensus 38 YLSGaa~aa~sLGlPDLG~~tL~Eva~~~r~Itr~~~LPlLVD~ 81 (287)
T TIGR02317 38 YLSGAAVAAGSLGLPDLGITTLTEVAERARRITRVTDLPLLVDA 81 (287)
T ss_pred EEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 10168774132067767667878999998877753048727863
No 434
>pfam07364 DUF1485 Protein of unknown function (DUF1485). This family consists of several hypothetical bacterial proteins of around 300 residues in length. Members of this family all appear to be in the Phylum Proteobacteria. The function of this family is unknown.
Probab=57.45 E-value=14 Score=16.96 Aligned_cols=50 Identities=8% Similarity=-0.070 Sum_probs=31.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 974899967889999999999839997545278770697899999999999999838
Q gi|254780434|r 286 PKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKEN 342 (362)
Q Consensus 286 ~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G 342 (362)
+++.=+.+-+=+-+.|+-+ +|++.|-+.. ..+...+++.++|.+++....
T Consensus 224 ~~vl~~sv~~Gfp~aDv~~---~G~svvv~td----~d~~~a~~~a~~la~~~w~~R 273 (292)
T pfam07364 224 GGVLSASFFHGFPWADVPE---MGPSVLVYTD----GDPAAAEAAADELAAELWARR 273 (292)
T ss_pred CCEEEEEEECCCCCCCCCC---CCCEEEEECC----CCHHHHHHHHHHHHHHHHHHH
T ss_conf 9907998857855545777---7757999908----989999999999999999755
No 435
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=57.16 E-value=14 Score=16.93 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=6.7
Q ss_pred EEECCCCCCCHHHHHH
Q ss_conf 0000247777788999
Q gi|254780434|r 110 INKLGFNNAGYHTVFS 125 (362)
Q Consensus 110 iN~~Gl~N~G~~~~~~ 125 (362)
+|=|+-|--|--.+++
T Consensus 107 lNl~sSPGSGKTtLLe 122 (290)
T PRK10463 107 LNLVSSPGSGKTTLLT 122 (290)
T ss_pred EEECCCCCCCHHHHHH
T ss_conf 9930699878899999
No 436
>COG5598 Trimethylamine:corrinoid methyltransferase [Coenzyme metabolism]
Probab=56.89 E-value=14 Score=16.90 Aligned_cols=178 Identities=17% Similarity=0.217 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC-----CCEEEEECCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 78899987641000121000110454246788776555420675-----5269830333653221100002343211112
Q gi|254780434|r 120 YHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFTI-----ASYFTINISSPNTPGLRSLQKKKNLERLLIH 194 (362)
Q Consensus 120 ~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~-----aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~ 194 (362)
++.+...++ ..+++...|+- +.+..+|+.++++.+... +..+.+|+-|+|.| + .-.+..-..+.+
T Consensus 194 l~~~~a~l~--~sdK~f~~s~~----~~eraed~iem~~i~~G~ee~~r~~p~~~~iin~nsP-l---~fde~m~~~l~~ 263 (526)
T COG5598 194 LDTIYAHLT--LSDKHFMGSAT----GPERAEDGIEMARIARGGEEEVRANPVVSTIINANSP-L---VFDETMCQGLIA 263 (526)
T ss_pred HHHHHHHHH--CCCCCCEEECC----CCCHHHHHHHHHHHHHCCHHHHCCCCEEEEEECCCCC-C---CCCHHHHHHHHH
T ss_conf 899999874--57777334216----8412577999999982757776049768763147886-3---104778999999
Q ss_pred HHHHHHHHHHHCCCCCEEEEE-------CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC----CCCCCCCCCCCCCC
Q ss_conf 244455655312688517865-------0577774888999998764498299980665553----23457754463221
Q gi|254780434|r 195 VMQTREEEKIKTGKFVPIFLK-------ISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSR----KGVQCSDNHEQDGG 263 (362)
Q Consensus 195 v~~~~~~~~~~~~~~~Pi~vK-------LsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~----~~~~~~~~~~~~GG 263 (362)
. .....|+.|- ++| .+ -.-.+++...|. ..|++++|-+..- -+..........|-
T Consensus 264 ~----------ar~gq~v~vtpf~l~GAmsP-vt--~AGal~Q~~AE~-LaGvalaQlvrPGaPv~yG~f~s~~DmksGa 329 (526)
T COG5598 264 Y----------ARHGQPVVVTPFALAGAMSP-VT--LAGALVQQNAEV-LAGVALAQLVRPGAPVVYGTFTSNVDMKSGA 329 (526)
T ss_pred H----------HHCCCEEEECHHHHCCCCCC-HH--HHHHHHHHHHHH-HHHHHHHHHCCCCCCEEECCCCCCCCCCCCC
T ss_conf 9----------85598179601555178774-13--788999999999-9758999860789852650465431334588
Q ss_pred CC-CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC-----HHHHHH-------HHHCCCCEEEECHHHHCCC
Q ss_conf 13-564542468999999974089748999678899-----999999-------9983999754527877069
Q gi|254780434|r 264 LS-GSPLFLKSTIALAKIRQRVGPKIAIIGTGGISS-----TKDALD-------KIMAGANLIQLYSAMIYEG 323 (362)
Q Consensus 264 lS-G~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s-----~~Da~e-------~l~aGAs~VQi~Tali~~G 323 (362)
.+ |.|-.-+......++.+++ .+|-=..|++.. ++-++| -+++||++|-=.-++.-.|
T Consensus 330 p~fGtPE~a~~~~~~gQLArry--gLP~rtag~~~~sk~pDaQAg~E~~~t~~~a~LaGaN~v~haAGwlegg 400 (526)
T COG5598 330 PAFGTPEPALASAGAGQLARRY--GLPYRTAGGGSAAKLPDAQAGYESAMTLWGAVLAGANLVYHAAGWLEGG 400 (526)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHCC
T ss_conf 8889838999999999999984--9986446786434685156678999999998864742011234666421
No 437
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.57 E-value=14 Score=16.87 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=48.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 88517865057777488899999876449829998066555323457754463221135645424689999999740897
Q gi|254780434|r 208 KFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPK 287 (362)
Q Consensus 208 ~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~ 287 (362)
..++|-|-.. + +++ +..+.++|+|.|-+-|-. ..-+++.-+..+++
T Consensus 188 ~~~kIeVEv~---t---l~q-~~~a~~~gaDiI~LDnms---------------------------~~~lk~av~~~~~~ 233 (277)
T PRK05742 188 PGKPVEVEVE---S---LDE-LRQALAAGADIVMLDELS---------------------------LDDMREAVRLTAGR 233 (277)
T ss_pred CCCCEEEEEC---C---HHH-HHHHHHCCCCEEEECCCC---------------------------HHHHHHHHHHHCCC
T ss_conf 9972699967---7---999-999874699899986999---------------------------99999999974797
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCEEEECH
Q ss_conf 489996788999999999983999754527
Q gi|254780434|r 288 IAIIGTGGISSTKDALDKIMAGANLIQLYS 317 (362)
Q Consensus 288 i~IIg~GGI~s~~Da~e~l~aGAs~VQi~T 317 (362)
+.|-++|||. .+.+.+|-..|.|.+-+++
T Consensus 234 ~~iEaSGGI~-~~ni~~yA~tGvD~IS~ga 262 (277)
T PRK05742 234 AKLEASGGIN-ETTLRVIAETGVDYISIGA 262 (277)
T ss_pred EEEEEECCCC-HHHHHHHHHCCCCEEECCH
T ss_conf 4899988999-9999999974999998880
No 438
>TIGR00519 asnASE_I L-asparaginases, type I; InterPro: IPR006033 Two related families of asparaginase are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This family includes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~80 residues in a conserved N-terminal region. These archaeal homologs are included in this family. ; GO: 0004067 asparaginase activity, 0006520 amino acid metabolic process.
Probab=56.51 E-value=15 Score=16.86 Aligned_cols=27 Identities=37% Similarity=0.602 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 7865057777488899999876449829998
Q gi|254780434|r 212 IFLKISPDLSEEELDDIAVEVLSHKVEGIIV 242 (362)
Q Consensus 212 i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~ 242 (362)
.++|+=|=++ .++++....-+.-|||+
T Consensus 223 ~lik~yPGl~----~di~~~~~~~~YkGiVi 249 (347)
T TIGR00519 223 ALIKLYPGLS----PDIIRAYLSKGYKGIVI 249 (347)
T ss_pred EEEEECCCCC----HHHHHHHCCCCCEEEEE
T ss_conf 8998668988----89999862699348998
No 439
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=56.50 E-value=15 Score=16.86 Aligned_cols=110 Identities=14% Similarity=0.057 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEE--ECCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 77889998764100012100011045424678877655542067-5526983--03336532211000023432111122
Q gi|254780434|r 119 GYHTVFSRLSKIQPTSPIGINLGANKDSKDFILDYVSGIRLFFT-IASYFTI--NISSPNTPGLRSLQKKKNLERLLIHV 195 (362)
Q Consensus 119 G~~~~~~~l~~~~~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~-~aD~iEi--NiSCPNt~g~~~~~~~~~l~~~l~~v 195 (362)
|++-..+.+. ..+.|+.-.|-+.+.. =..++|.+++.++.. +.|++-= |+.+|.-- .+++-+..+
T Consensus 154 GI~g~R~~lg--v~~RPLlgtiiKPklG-Lsp~~~a~v~ye~~~GGvDfIKDDE~l~~~pf~---------p~eeRv~~v 221 (477)
T CHL00040 154 GIQVERDKLN--KYGRPLLGCTIKPKLG-LSAKNYGRAVYECLRGGLDFTKDDENVNSQPFM---------RWRDRFLFC 221 (477)
T ss_pred CCHHHHHHHC--CCCCCCEEEECCCCCC-CCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCC---------CHHHHHHHH
T ss_conf 4066698757--8888602420367779-997999999999970487452076556798888---------789999999
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 4445565531268851786505777748889999987644982999
Q gi|254780434|r 196 MQTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGII 241 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv 241 (362)
.+...+...+...++=..+-++-+ +.+++.+-++.+.+.|+..+-
T Consensus 222 ~eai~ra~~eTGe~k~y~~NiTa~-~~eeM~~RAe~a~e~G~~~vM 266 (477)
T CHL00040 222 AEAIYKAQAETGEIKGHYLNATAG-TCEEMYKRAVFARELGVPIVM 266 (477)
T ss_pred HHHHHHHHHHHCCEEEEEEEECCC-CHHHHHHHHHHHHHCCCCEEE
T ss_conf 999999999769801899961479-899999999999970996799
No 440
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.07 E-value=15 Score=16.81 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=49.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 88517865057777488899999876449829998066555323457754463221135645424689999999740897
Q gi|254780434|r 208 KFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPK 287 (362)
Q Consensus 208 ~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~ 287 (362)
..++|-|-.. + +++ +..+.++|+|.|-+-|-+ ...+++.-+...++
T Consensus 187 ~~~kIeVEv~---s---~~q-~~~a~~~g~diImLDNm~---------------------------p~~ik~~v~~~~~~ 232 (277)
T PRK08072 187 HMVKIEVETE---T---EEQ-VREAVAAGADIIMFDNRT---------------------------PDEIREFVKLVPSA 232 (277)
T ss_pred CCCEEEEEEC---C---HHH-HHHHHHCCCCEEEECCCC---------------------------HHHHHHHHHHHCCC
T ss_conf 9855999719---8---999-999986799899987989---------------------------99999999961696
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCEEEECH
Q ss_conf 489996788999999999983999754527
Q gi|254780434|r 288 IAIIGTGGISSTKDALDKIMAGANLIQLYS 317 (362)
Q Consensus 288 i~IIg~GGI~s~~Da~e~l~aGAs~VQi~T 317 (362)
+.+-++||| +.+.+.+|-..|-|.+-++.
T Consensus 233 ~~~EaSGgI-~~~ni~~yA~tGVD~IS~g~ 261 (277)
T PRK08072 233 IVTEASGGI-TLENLPKYGGTGVDYISLGF 261 (277)
T ss_pred EEEEEECCC-CHHHHHHHHHCCCCEEECCH
T ss_conf 499998899-89999999964999998681
No 441
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=55.34 E-value=15 Score=16.73 Aligned_cols=20 Identities=30% Similarity=0.275 Sum_probs=13.7
Q ss_pred HHHHCCCCCEEEEECCCCCC
Q ss_conf 54206755269830333653
Q gi|254780434|r 157 IRLFFTIASYFTINISSPNT 176 (362)
Q Consensus 157 ~~~~~~~aD~iEiNiSCPNt 176 (362)
++++...+|++.||+.-|+.
T Consensus 48 ~~e~~~~a~al~iNiGTl~~ 67 (262)
T PRK09355 48 AEEMAKIASALVINIGTLTE 67 (262)
T ss_pred HHHHHHHCCCEEEECCCCCH
T ss_conf 99999753724886688998
No 442
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=55.21 E-value=15 Score=16.72 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=50.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 85178650577774888999998764498299980665553234577544632211356454246899999997408974
Q gi|254780434|r 209 FVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKI 288 (362)
Q Consensus 209 ~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i 288 (362)
.+||-|-.. .+++ +..+.++|+|.|-+-|-+ ...+++..+....++
T Consensus 182 ~~~IeVEv~------s~~e-~~~a~~~gadiI~LDn~s---------------------------pe~~~~~v~~~~~~v 227 (268)
T cd01572 182 TLKIEVEVE------TLEQ-LKEALEAGADIIMLDNMS---------------------------PEELREAVALLKGRV 227 (268)
T ss_pred CCEEEEEEC------CHHH-HHHHHHCCCCEEEECCCC---------------------------HHHHHHHHHHHCCCE
T ss_conf 852999948------8999-999997599999977999---------------------------999999999866956
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf 899967889999999999839997545278
Q gi|254780434|r 289 AIIGTGGISSTKDALDKIMAGANLIQLYSA 318 (362)
Q Consensus 289 ~IIg~GGI~s~~Da~e~l~aGAs~VQi~Ta 318 (362)
.|-++|||. .+.+.+|-..|.|.+-+++-
T Consensus 228 ~ieaSGgIn-~~ni~~ya~~GvD~Is~g~l 256 (268)
T cd01572 228 LLEASGGIT-LENIRAYAETGVDYISVGAL 256 (268)
T ss_pred EEEEECCCC-HHHHHHHHHCCCCEEECCHH
T ss_conf 999989998-99999999759999983854
No 443
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=54.96 E-value=15 Score=16.69 Aligned_cols=180 Identities=15% Similarity=0.122 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHH--CCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 7889998764100--01210001104542467887765554206755269830333-65322110000234321111224
Q gi|254780434|r 120 YHTVFSRLSKIQP--TSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISS-PNTPGLRSLQKKKNLERLLIHVM 196 (362)
Q Consensus 120 ~~~~~~~l~~~~~--~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSC-PNt~g~~~~~~~~~l~~~l~~v~ 196 (362)
.+++.+-++..+. +..+-+|+|- -+.+..+++ ...++|++..|+-- |+-- ........+++-+..+.
T Consensus 117 ~~~i~~~v~~Vk~~~~le~c~slG~--l~~eq~~~L------~~aGvd~ynhNLeTs~~~y--~~I~tt~t~edR~~tl~ 186 (335)
T COG0502 117 MEEVVEAIKAVKEELGLEVCASLGM--LTEEQAEKL------ADAGVDRYNHNLETSPEFY--ENIITTRTYEDRLNTLE 186 (335)
T ss_pred HHHHHHHHHHHHHHCCCHHHHCCCC--CCHHHHHHH------HHCCHHHEECCCCCCHHHH--CCCCCCCCHHHHHHHHH
T ss_conf 8999999999998469286402587--999999999------9718113303555697887--56578988889999999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 4455655312688517865057777488899999876449-829998066555323457754463221135645424689
Q gi|254780434|r 197 QTREEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVLSHK-VEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTI 275 (362)
Q Consensus 197 ~~~~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g-~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~ 275 (362)
..+.. -...-.=.++-|. -+.++-.+++..+.+.. .|-| -+|.....+++.-..... +| .--.++
T Consensus 187 ~vk~~---Gi~vcsGgI~GlG--Es~eDri~~l~~L~~l~~pdsV-PIn~l~P~~GTPle~~~~----~~----~~e~lk 252 (335)
T COG0502 187 NVREA---GIEVCSGGIVGLG--ETVEDRAELLLELANLPTPDSV-PINFLNPIPGTPLENAKP----LD----PFEFLK 252 (335)
T ss_pred HHHHC---CCCCCCCEEECCC--CCHHHHHHHHHHHHHCCCCCEE-EEEEECCCCCCCCCCCCC----CC----HHHHHH
T ss_conf 99980---9850451276189--9888999999999718998854-232103799986665899----99----899999
Q ss_pred HHHHHHHHCCCCEEEEEECCCCC--HHHHHHHHHCCCCEEEECH-HHHCCCH
Q ss_conf 99999974089748999678899--9999999983999754527-8770697
Q gi|254780434|r 276 ALAKIRQRVGPKIAIIGTGGISS--TKDALDKIMAGANLIQLYS-AMIYEGI 324 (362)
Q Consensus 276 ~i~~i~~~~~~~i~IIg~GGI~s--~~Da~e~l~aGAs~VQi~T-ali~~Gp 324 (362)
.|+..|=.. ++.-|..+||... .+-...-++|||+.+-++- -+...|+
T Consensus 253 ~IA~~Ri~~-P~~~Ir~s~gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~~ 303 (335)
T COG0502 253 TIAVARIIM-PKSMIRLSAGRETMLPELQALAFMAGANSIFVGDKYLTTPGP 303 (335)
T ss_pred HHHHHHHHC-CCCEEECCCCCCCCCHHHHHHHHHHCCCEEEECCEEEECCCC
T ss_conf 999999977-864567258835225888999998456635652447624899
No 444
>PRK13780 phosphocarrier protein HPr; Provisional
Probab=54.83 E-value=15 Score=16.68 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=47.2
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999740897489996788999999999983999754527877069789999999999999983899
Q gi|254780434|r 276 ALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKENEV 344 (362)
Q Consensus 276 ~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~~ 344 (362)
.+.+..+.+..++.|..-|---+++++...|..||.-=+.-+ +.-+|+. -.+-.+.|.++|+++||.
T Consensus 21 ~lv~~a~~f~s~I~i~~~~k~~naKSi~~lm~Lg~~~G~~i~-i~a~G~D-e~~A~~~l~~~l~~~glg 87 (88)
T PRK13780 21 LLVQTASKFDSDITLEYNGKSVNLKSIMGVMSLGVGQGADIT-ISAEGAD-EADAIAAIEETMKKEGLA 87 (88)
T ss_pred HHHHHHHHCCCEEEEEECCEEECCHHHHHHHHHCCCCCCEEE-EEEECCC-HHHHHHHHHHHHHHCCCC
T ss_conf 999999738977999989999821749999961788989999-9997889-999999999999876899
No 445
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase; InterPro: IPR004621 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in eukaryotes, and currently designated methylenetetrahydrofolate reductase (1.5.1.20 from EC). This protein is an FAD-containing flavoprotein.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process.
Probab=53.39 E-value=16 Score=16.53 Aligned_cols=64 Identities=16% Similarity=0.062 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 7748889999987644982999806655532345775446322113564542468999999974089748
Q gi|254780434|r 220 LSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIA 289 (362)
Q Consensus 220 ~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~ 289 (362)
+..+.|+...+.+.+.|+.=|-|-- +|-| ...... .-.-+...=+.-|+.+|+++|+.+++.+.
T Consensus 77 ~~~e~ID~AL~~~~~~G~~NiLALR--GDPP-~~~~~w---lds~~~EgGF~YA~DLV~yIr~~YGD~F~ 140 (312)
T TIGR00677 77 MPIEMIDDALERAKSNGIQNILALR--GDPP-HGDEDW---LDSTEVEGGFKYAVDLVKYIRSKYGDYFC 140 (312)
T ss_pred CCHHHHHHHHHHHHHCCCCEEECCC--CCCC-CCCCCC---CCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 7578899999999865653340037--6106-876553---34567875157667889987752388021
No 446
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=53.34 E-value=14 Score=16.90 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 424689999999740897489996788
Q gi|254780434|r 270 FLKSTIALAKIRQRVGPKIAIIGTGGI 296 (362)
Q Consensus 270 ~~~al~~i~~i~~~~~~~i~IIg~GGI 296 (362)
.|+|......+|.. |---.+||.|.+
T Consensus 366 LPRAI~FtaalYSi-GlPPEliG~~~~ 391 (487)
T PRK13655 366 LPRAITFTGALYSI-GLPPELIGAGRA 391 (487)
T ss_pred CCCHHHHHHHHHHC-CCCHHHHCCHHH
T ss_conf 77334334677845-898354072547
No 447
>PRK10949 protease 4; Provisional
Probab=53.07 E-value=13 Score=17.11 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=7.3
Q ss_pred EEEECCCCCHHHHH
Q ss_conf 99967889999999
Q gi|254780434|r 290 IIGTGGISSTKDAL 303 (362)
Q Consensus 290 IIg~GGI~s~~Da~ 303 (362)
=|+-|-|-+|+||.
T Consensus 505 ~iAqGRVWsG~~A~ 518 (618)
T PRK10949 505 KIAQGHVWTGQDAK 518 (618)
T ss_pred HHCCCCEEEHHHHH
T ss_conf 86488377699999
No 448
>pfam02873 MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain. Members of this family are UDP-N-acetylenolpyruvoylglucosamine reductase enzymes EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.
Probab=52.34 E-value=7.9 Score=18.65 Aligned_cols=39 Identities=28% Similarity=0.358 Sum_probs=26.2
Q ss_pred EEEECCEECCCCEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCC
Q ss_conf 16888733599748534688867798887403675241020013687
Q gi|254780434|r 46 NTKVAGISLSNPLGMAAGYDKNAEVPIELLKLGFGFVEIGTVTPHPQ 92 (362)
Q Consensus 46 ~~~~~Gl~~~nPiglAaG~dk~~~~~~~l~~~G~G~v~~ktit~~p~ 92 (362)
...-+|-.|+||.+.+|| .-+..+|+-...+|.+...++
T Consensus 22 ~~~~~GS~FKNP~~~~Ag--------~LIe~~G~kG~~~G~a~vS~k 60 (103)
T pfam02873 22 KFPNAGSTFKNPEGFAAG--------WLIEEAGLKGYQIGGAQVSEK 60 (103)
T ss_pred CCCCEEEEEECCCCCCHH--------HHHHHHCCCCCCCCCEEEEEC
T ss_conf 999872785590997399--------999996879885599889625
No 449
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=52.14 E-value=17 Score=16.40 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=12.4
Q ss_pred HCCCCEEEECHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 83999754527877069789999999999999
Q gi|254780434|r 307 MAGANLIQLYSAMIYEGISLPKRIIQGLSDFL 338 (362)
Q Consensus 307 ~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l 338 (362)
..|+...++.|+.- |. +..|.+.|.+.|
T Consensus 246 ~Qa~~qf~iwtg~~---~~-~~~~~~~l~~~l 273 (275)
T PRK00258 246 HQAAEAFELWTGVR---PD-VEPVLRALREAL 273 (275)
T ss_pred HHHHHHHHHHHCCC---CC-HHHHHHHHHHHH
T ss_conf 99999999984999---99-999999999975
No 450
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=52.08 E-value=17 Score=16.39 Aligned_cols=92 Identities=18% Similarity=0.192 Sum_probs=55.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 78650577774888999998764498299980665553234577544632211356454246899999997408974899
Q gi|254780434|r 212 IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAII 291 (362)
Q Consensus 212 i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~II 291 (362)
|.--.+|--+.+.+.++++.+++.|+|.|.+..|. ++..+ ..+-.+|+.+++.+ ++||-
T Consensus 143 i~yt~sp~~t~~yyv~~a~~l~~~Gad~I~ikD~a----Gll~P---------------~~~~eLV~aLk~~~--~lpI~ 201 (463)
T PRK12331 143 ISYTTSPVHTIDYFVKLAKEMQEIGADSICIKDMA----GILTP---------------YVAYELVKCIKENV--TVPLE 201 (463)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCC----CCCCH---------------HHHHHHHHHHHHHC--CCCEE
T ss_conf 99725886769999999999996499889986786----77688---------------99999999999744--98569
Q ss_pred EECCCCCH---HHHHHHHHCCCCEEEECHHHHCCCH
Q ss_conf 96788999---9999999839997545278770697
Q gi|254780434|r 292 GTGGISST---KDALDKIMAGANLIQLYSAMIYEGI 324 (362)
Q Consensus 292 g~GGI~s~---~Da~e~l~aGAs~VQi~Tali~~Gp 324 (362)
==.==.+| .-.++-+.||||.|.++..-+-.|.
T Consensus 202 ~HtH~t~Gla~an~laAieAGaDivD~a~~~~s~gt 237 (463)
T PRK12331 202 VHTHATSGIAEMTYLKAIEAGADIIDTAISPFAGGT 237 (463)
T ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 983688757999999999849999962353546797
No 451
>COG4472 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.08 E-value=16 Score=16.49 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHC
Q ss_conf 9999999999999838997789616
Q gi|254780434|r 327 PKRIIQGLSDFLNKENEVNFENIRG 351 (362)
Q Consensus 327 ~~~I~~~L~~~l~~~G~~si~e~iG 351 (362)
++++..+.-.-|+++||+-|.+++|
T Consensus 20 v~e~L~~VY~sL~ekGYNpiNQiVG 44 (88)
T COG4472 20 VKETLNDVYNSLEEKGYNPINQIVG 44 (88)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9999999999998727872877884
No 452
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=52.08 E-value=17 Score=16.39 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEE
Q ss_conf 888999998764498299980
Q gi|254780434|r 223 EELDDIAVEVLSHKVEGIIVS 243 (362)
Q Consensus 223 ~~i~~ia~~a~~~g~dGiv~~ 243 (362)
.++.++-+.+.+.|++.+++.
T Consensus 174 ~d~~eik~ll~~~Gi~~~vl~ 194 (435)
T cd01974 174 GNMREIKRLLELMGVDYTILP 194 (435)
T ss_pred CHHHHHHHHHHHCCCCEEEEE
T ss_conf 149999999998699779940
No 453
>pfam02110 HK Hydroxyethylthiazole kinase family.
Probab=51.93 E-value=16 Score=16.55 Aligned_cols=19 Identities=26% Similarity=0.301 Sum_probs=13.1
Q ss_pred HHHCCCCCEEEEECCCCCC
Q ss_conf 4206755269830333653
Q gi|254780434|r 158 RLFFTIASYFTINISSPNT 176 (362)
Q Consensus 158 ~~~~~~aD~iEiNiSCPNt 176 (362)
+++...+|++.||+.-|+.
T Consensus 44 ~e~~~~a~al~iNiGTl~~ 62 (246)
T pfam02110 44 AELAKIAGALVINIGTLDN 62 (246)
T ss_pred HHHHHHCCEEEEECCCCCH
T ss_conf 9999862806997788998
No 454
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=51.19 E-value=18 Score=16.30 Aligned_cols=89 Identities=12% Similarity=0.206 Sum_probs=54.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 88517865057777488899999876449--8299980665553234577544632211356454246899999997408
Q gi|254780434|r 208 KFVPIFLKISPDLSEEELDDIAVEVLSHK--VEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVG 285 (362)
Q Consensus 208 ~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g--~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~ 285 (362)
..+|..+=+ |....++.+..+++.+.| ..||=+ +++.. .+|. .-.+++++|+.++
T Consensus 199 ~~~p~i~LV--Dty~d~~~~al~va~~lg~~l~gVRL----------DT~~~---r~Gd--------~~~l~~~vR~~LD 255 (343)
T PRK08662 199 PDVPRIALV--DTFKDEREEALRAAEALGDRLDGVRL----------DTPSS---RRGN--------FRKIVEEVRWTLD 255 (343)
T ss_pred CCCCEEEEE--ECCCCCHHHHHHHHHHHCCCCCEEEE----------CCCCC---CCCC--------HHHHHHHHHHHHH
T ss_conf 998759999--67772468999999984865788984----------68987---7887--------7999999999854
Q ss_pred ----CCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHC
Q ss_conf ----974899967889999999999839997545278770
Q gi|254780434|r 286 ----PKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIY 321 (362)
Q Consensus 286 ----~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~ 321 (362)
.++.|+.+||+ +.+...++..+ +|...|+|.+..
T Consensus 256 ~~G~~~vkIv~Sggl-de~~I~~l~~~-vD~fGVGt~l~~ 293 (343)
T PRK08662 256 LHGYSHVKIFVSGGL-DEEDIRELRDV-VDGFGVGTSISF 293 (343)
T ss_pred HCCCCCCEEEEECCC-CHHHHHHHHHH-CCEEEECCCCCC
T ss_conf 557998289994899-99999999864-868960665578
No 455
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=50.29 E-value=18 Score=16.21 Aligned_cols=37 Identities=38% Similarity=0.533 Sum_probs=18.1
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCE
Q ss_conf 99999997408974899967889999999999839997
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANL 312 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~ 312 (362)
..++++|+. .+++|||-+.|-.+.+++.+.+.+||+.
T Consensus 58 el~~~ir~~-~~~~pvI~lT~~~~~~~~~~a~~~Ga~~ 94 (113)
T cd00156 58 ELLRRIRKR-GPDIPIIFLTAHGDDEDAVEALKAGADD 94 (113)
T ss_pred HHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHCCCCE
T ss_conf 999999985-8999599997878999999999768978
No 456
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=50.13 E-value=18 Score=16.19 Aligned_cols=37 Identities=14% Similarity=0.058 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 8851786505777748889999987644982999806
Q gi|254780434|r 208 KFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSN 244 (362)
Q Consensus 208 ~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~N 244 (362)
...|++=-++-.-..+.++.++..+.++|+.-|.++.
T Consensus 91 ~Gr~iINSis~e~g~er~~~i~pLakkyga~vI~L~~ 127 (252)
T cd00740 91 QGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 9986774163445488999999999870998999952
No 457
>pfam00224 PK Pyruvate kinase, barrel domain. This domain of the is actually a small beta-barrel domain nested within a larger TIM barrel. The active site is found in a cleft between the two domains.
Probab=50.00 E-value=18 Score=16.18 Aligned_cols=108 Identities=19% Similarity=0.221 Sum_probs=53.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 68851786505777748889999987644982999806655532345775446322113564542468999999974089
Q gi|254780434|r 207 GKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGP 286 (362)
Q Consensus 207 ~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~ 286 (362)
...++|++|+---...+++.++++ + .|||.+. |-++.... |..--|...+.|-+.....+
T Consensus 215 ~~~~~IIaKIE~~~al~Nl~eIi~---~--sDgImIA-----RGDLg~ei---------~~e~vp~~Qk~ii~~~~~~~- 274 (348)
T pfam00224 215 GKDIKIIAKIENQEGVNNFDEILE---A--SDGIMVA-----RGDLGIEI---------PAEEVFLAQKMLIAKCNLAG- 274 (348)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHH---H--CCEEEEE-----CCCCCCCC---------CHHHHHHHHHHHHHHHHHCC-
T ss_conf 887605998447898867888998---5--8889984-----47644558---------98898999999999999859-
Q ss_pred CEEEEEECCC------------CCHHHHHHHHHCCCCEEEEC--HHHHCCCH----HHHHHHHHHHHH
Q ss_conf 7489996788------------99999999998399975452--78770697----899999999999
Q gi|254780434|r 287 KIAIIGTGGI------------SSTKDALDKIMAGANLIQLY--SAMIYEGI----SLPKRIIQGLSD 336 (362)
Q Consensus 287 ~i~IIg~GGI------------~s~~Da~e~l~aGAs~VQi~--Tali~~Gp----~~~~~I~~~L~~ 336 (362)
.|+|-..=+ ....|++..+.-|||+|++. ||.--. | ....+|.++-.+
T Consensus 275 -kpvivATqmLeSM~~~~~PTRAEv~Dvanav~dGad~vmLs~ETa~G~~-P~~~v~~l~~I~~~~E~ 340 (348)
T pfam00224 275 -KPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGNY-PVEAVKMMARICLEAEK 340 (348)
T ss_pred -CCEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCC-HHHHHHHHHHHHHHHHH
T ss_conf -9299982757765149998569999999999838888997740217879-99999999999999871
No 458
>TIGR02713 allophanate_hyd allophanate hydrolase; InterPro: IPR014085 Allophanate hydrolase catalyses the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase..
Probab=49.66 E-value=19 Score=16.14 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=40.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHCC----CCE-----EEEEECCCCCHHHH-------------HHHHHCCCCEEEECHH
Q ss_conf 1356454246899999997408----974-----89996788999999-------------9999839997545278
Q gi|254780434|r 264 LSGSPLFLKSTIALAKIRQRVG----PKI-----AIIGTGGISSTKDA-------------LDKIMAGANLIQLYSA 318 (362)
Q Consensus 264 lSG~~i~~~al~~i~~i~~~~~----~~i-----~IIg~GGI~s~~Da-------------~e~l~aGAs~VQi~Ta 318 (362)
|+||++.++- ..|+++.+... +.+ .||..+.=+|+-|+ .+.+.+|.|++.+=|+
T Consensus 271 YeGPWVAERy-~Av~~f~~~~p~~~~~~~~PvVR~I~~~A~~~sA~DaF~a~YrL~~L~~~~~~~~~~~D~L~vPTa 346 (582)
T TIGR02713 271 YEGPWVAERY-AAVGEFVEAQPDDDKDALDPVVRGIITSAERFSAADAFAAEYRLAELRRKAEALLAGVDVLLVPTA 346 (582)
T ss_pred CCCCCHHHHH-HHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 2680189999-999999862888777777611789873015788899999999999999999999845888842766
No 459
>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=49.46 E-value=19 Score=16.12 Aligned_cols=63 Identities=25% Similarity=0.380 Sum_probs=40.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCE-EEEEEC-----CCCCHHHHHHHHH--CCCCEEEECHHHHCC
Q ss_conf 32211356454246899999997408974-899967-----8899999999998--399975452787706
Q gi|254780434|r 260 QDGGLSGSPLFLKSTIALAKIRQRVGPKI-AIIGTG-----GISSTKDALDKIM--AGANLIQLYSAMIYE 322 (362)
Q Consensus 260 ~~GGlSG~~i~~~al~~i~~i~~~~~~~i-~IIg~G-----GI~s~~Da~e~l~--aGAs~VQi~Tali~~ 322 (362)
.+|=++---.-.+|+.-++++.+.++-++ ||+|+| |=.+++-+.+++. +|.-.--|-|||-|.
T Consensus 217 nyG~laA~l~~K~AL~~l~el~ee~~~~i~PI~G~Gs~PFRG~l~P~n~e~~~~EY~gv~T~TvQSafkYD 287 (488)
T COG1892 217 NYGHLAAVLAVKKALSELSELSEELGVPIYPILGVGSLPFRGHLRPENAENVLEEYAGVYTYTVQSAFKYD 287 (488)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 33228999999999999998776229850001147888857888856668999972782489975210026
No 460
>pfam06253 MTTB Trimethylamine methyltransferase (MTTB). This family consists of several trimethylamine methyltransferase (MTTB) (EC:2.1.1.-) proteins from numerous Rhizobium and Methanosarcina species.
Probab=49.45 E-value=14 Score=16.95 Aligned_cols=165 Identities=19% Similarity=0.289 Sum_probs=78.0
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCC------CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 001210001104542467887765554206755------26983033365322110000234321111224445565531
Q gi|254780434|r 132 PTSPIGINLGANKDSKDFILDYVSGIRLFFTIA------SYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIK 205 (362)
Q Consensus 132 ~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~a------D~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~ 205 (362)
.++|+.++.. +.+..+|..++++.+...- -++-.| .|||.| + ..+.+.++.+...+
T Consensus 187 TdK~~~~~~~----~~e~v~d~ieM~~i~~G~ee~~~~~P~~~~~-in~~SP-L--~~d~~~~~~l~~~a---------- 248 (505)
T pfam06253 187 SDKPFMGSAT----GRERAEDGIEMARIARGIEDFVRANPVILTI-INVNSP-L--VFDETMAGGLIAYA---------- 248 (505)
T ss_pred CCCCEEEECC----CHHHHHHHHHHHHHHCCCHHHHHHCCEEEEE-ECCCCC-C--CCCHHHHHHHHHHH----------
T ss_conf 9984487518----7675899999999976878889739658876-447887-6--52889999999999----------
Q ss_pred CCCCCEEEEE-------CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC------CCCCCCCCCCCCC-CCCCCH
Q ss_conf 2688517865-------0577774888999998764498299980665553234------5775446322113-564542
Q gi|254780434|r 206 TGKFVPIFLK-------ISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGV------QCSDNHEQDGGLS-GSPLFL 271 (362)
Q Consensus 206 ~~~~~Pi~vK-------LsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~------~~~~~~~~~GGlS-G~~i~~ 271 (362)
....|+.+- .+| .+ -.-.+++...|. ..|+++++-+ +++. .........|..+ |.|-.-
T Consensus 249 -~~gqpv~i~p~~laGAtaP-vT--~AGalaq~~AE~-LaGi~l~Qli--~PGaPviyG~~~~~~DmrtGa~~~GtpE~~ 321 (505)
T pfam06253 249 -EHGQPVVITPFTLAGAMAP-VT--IAGALAQQNAEA-LAGVALTQLV--RPGAPVIYGTFTSNVDMKSGAPAFGTPEPA 321 (505)
T ss_pred -HCCCCEEECCHHCCCCCCC-CC--HHHHHHHHHHHH-HHHHHHHHHC--CCCCCEEECCCCCCEECCCCCCCCCCHHHH
T ss_conf -7699789601321688876-53--899999999999-9999999972--899977978876521057688888888999
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCC-----CHHHHHH-------HHHCCCCEEEECHHHHCCC
Q ss_conf 46899999997408974899967889-----9999999-------9983999754527877069
Q gi|254780434|r 272 KSTIALAKIRQRVGPKIAIIGTGGIS-----STKDALD-------KIMAGANLIQLYSAMIYEG 323 (362)
Q Consensus 272 ~al~~i~~i~~~~~~~i~IIg~GGI~-----s~~Da~e-------~l~aGAs~VQi~Tali~~G 323 (362)
.......++.+.+ ++|--..||.+ +++-.+| -.++||++|--+.+++-.|
T Consensus 322 ~~~~~~~QmAr~y--gLP~r~~~g~tdsk~~DaQAg~E~~~t~~~~~laGaN~i~h~aG~le~~ 383 (505)
T pfam06253 322 KATLAAGQLARRY--GLPYRTSGGMSASKLPDAQAAYESVMALWGAVLAGANLVYHAAGWLEGG 383 (505)
T ss_pred HHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHCC
T ss_conf 9999999999981--9986766666446882246899999999999964986233367554010
No 461
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=49.16 E-value=19 Score=16.09 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=50.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 85178650577774888999998764498299980665553234577544632211356454246899999997408974
Q gi|254780434|r 209 FVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKI 288 (362)
Q Consensus 209 ~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i 288 (362)
.++|-|-.. .+++ +..+.++|+|.|-+-|-+ . ..-.+++..+++. +++
T Consensus 181 ~~kIeVEv~------tl~e-a~~a~~~g~D~I~LDn~~------------~-----------~~~~~~v~~~~~~--~~v 228 (269)
T cd01568 181 EKKIEVEVE------TLEE-AEEALEAGADIIMLDNMS------------P-----------EELKEAVKLLKGL--PRV 228 (269)
T ss_pred CCEEEEEEC------CHHH-HHHHHHCCCCEEEECCCC------------H-----------HHHHHHHHHHCCC--CCE
T ss_conf 843999949------8999-999997699999987989------------9-----------9999999984779--985
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCC
Q ss_conf 89996788999999999983999754527877069
Q gi|254780434|r 289 AIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEG 323 (362)
Q Consensus 289 ~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~G 323 (362)
.|.++|||. .+.+.+|-..|+|.+-+++ ++++
T Consensus 229 ~ieaSGgI~-~~ni~~ya~~GvD~Is~g~--lt~s 260 (269)
T cd01568 229 LLEASGGIT-LENIRAYAETGVDVISTGA--LTHS 260 (269)
T ss_pred EEEEECCCC-HHHHHHHHHCCCCEEEECH--HHCC
T ss_conf 999989999-9999999975999999084--0059
No 462
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=49.16 E-value=19 Score=16.09 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=24.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 68851786505777748889999987644982999806
Q gi|254780434|r 207 GKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSN 244 (362)
Q Consensus 207 ~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~N 244 (362)
....|++=-++ ...+.++.+...+.++|+.=|.++.
T Consensus 89 ~~Gr~iINSis--~e~er~~~i~pLakkyga~vI~L~~ 124 (268)
T PRK07535 89 AKGRPLINSVS--AEEERLEAVLPLVKKYNAPVVALTM 124 (268)
T ss_pred CCCCCEEEEEC--CCHHHHHHHHHHHHHHCCEEEEEEC
T ss_conf 79997266003--8805699999999984997999942
No 463
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.15 E-value=19 Score=16.09 Aligned_cols=75 Identities=15% Similarity=0.255 Sum_probs=49.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 88517865057777488899999876449829998066555323457754463221135645424689999999740897
Q gi|254780434|r 208 KFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPK 287 (362)
Q Consensus 208 ~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~ 287 (362)
..+||-|-.- .++++. .+.++|+|.|-+-|-. ...+++.-+...++
T Consensus 198 ~~~~IeVEve------~l~q~~-~al~~g~d~ImLDNms---------------------------~~~~~~av~~~~~~ 243 (288)
T PRK06978 198 AGVPVQIEVE------TLAQLE-TALAHGAQSVLLDNFT---------------------------LDMMREAVRVTAGR 243 (288)
T ss_pred CCCCEEEEEC------CHHHHH-HHHHCCCCEEEECCCC---------------------------HHHHHHHHHHHCCC
T ss_conf 9986599964------477789-9984899999957999---------------------------99999999964796
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCEEEECH
Q ss_conf 489996788999999999983999754527
Q gi|254780434|r 288 IAIIGTGGISSTKDALDKIMAGANLIQLYS 317 (362)
Q Consensus 288 i~IIg~GGI~s~~Da~e~l~aGAs~VQi~T 317 (362)
+.+-++|||. .+.+.+|-..|.|.+-+++
T Consensus 244 ~~lEaSGgI~-~~ni~~yA~tGVD~IS~Ga 272 (288)
T PRK06978 244 AVLEVSGGVN-FDTVRAFAETGVDRISIGA 272 (288)
T ss_pred EEEEEECCCC-HHHHHHHHHCCCCEEECCH
T ss_conf 7999989999-9999999966999998885
No 464
>pfam02900 LigB Catalytic LigB subunit of aromatic ring-opening dioxygenase.
Probab=48.98 E-value=19 Score=16.07 Aligned_cols=26 Identities=38% Similarity=0.690 Sum_probs=20.1
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHH
Q ss_conf 99999997408974899967889999
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTK 300 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~ 300 (362)
+.++.+++..+.++.|||+||++..-
T Consensus 157 ~al~~~~~~~~~~v~iigSG~lSH~l 182 (265)
T pfam02900 157 RALAKAREKLPERVLVIGSGGLSHNL 182 (265)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 99999998469977999537654567
No 465
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=48.85 E-value=19 Score=16.06 Aligned_cols=69 Identities=20% Similarity=0.344 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 4542468999999974089748999678899999999998399-975452787706978999999999999998389
Q gi|254780434|r 268 PLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGA-NLIQLYSAMIYEGISLPKRIIQGLSDFLNKENE 343 (362)
Q Consensus 268 ~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGA-s~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~ 343 (362)
|+.+-...-.+++++.+ ++||.+.-.+.+.+|+.+++..|| |.||+--+. .-|..-..+| .++.+.+|.
T Consensus 222 P~~~~d~~~~~~l~~~~--~ipIa~gE~~~~~~~~~~~i~~~a~div~~d~~~-~GGit~~~ki----a~~A~~~gi 291 (365)
T cd03318 222 PVPRENLDGLARLRSRN--RVPIMADESVSGPADAFELARRGAADVFSLKIAK-SGGLRRAQKV----AAIAEAAGI 291 (365)
T ss_pred CCCCCCHHHHHHHHHCC--CCCEEECCCCCCHHHHHHHHHHCCCCCEEECCCC-CCCHHHHHHH----HHHHHHCCC
T ss_conf 99953699999886258--9888937887999999999873344423532366-7978999999----999998699
No 466
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=48.69 E-value=19 Score=16.04 Aligned_cols=20 Identities=5% Similarity=0.127 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHCCCCEEEE
Q ss_conf 88899999876449829998
Q gi|254780434|r 223 EELDDIAVEVLSHKVEGIIV 242 (362)
Q Consensus 223 ~~i~~ia~~a~~~g~dGiv~ 242 (362)
+++.++++.+.+.|++.+-+
T Consensus 170 ~~l~~i~~la~~lGv~~~~l 189 (375)
T PRK05301 170 DQIPRIIELAVELGADRLEL 189 (375)
T ss_pred HHHHHHHHHHHHCCCCEEEE
T ss_conf 88999999999729982898
No 467
>TIGR01954 nusA_Cterm_rpt transcription termination factor NusA, C-terminal duplication; InterPro: IPR010214 NusA, or N utilisation substance protein A, is a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in Escherichia coli of phage lambda antitermination protein N with the N-utilisation substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and NusG . This entry represents an acidic 50-residue region found in two copies toward the C terminus of most proteobacterial NusA proteins, spaced about 26 residues apart. Analogous C-terminal extensions in some other bacterial lineages lack apparent homology but appear similarly acidic ; GO: 0030528 transcription regulator activity.
Probab=48.28 E-value=10 Score=17.95 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHCCCCCHHHH
Q ss_conf 99999999998389977896
Q gi|254780434|r 330 IIQGLSDFLNKENEVNFENI 349 (362)
Q Consensus 330 I~~~L~~~l~~~G~~si~e~ 349 (362)
|.+++.+.|-.+||+|++|+
T Consensus 1 ~~e~~a~~Lv~eGf~t~Edl 20 (52)
T TIGR01954 1 IDEEIAQLLVEEGFTTVEDL 20 (52)
T ss_pred CCHHHHHHHHHHCCCHHHHH
T ss_conf 95788999997367317887
No 468
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=47.85 E-value=20 Score=15.96 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=18.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 85178650577774888999998764498299980665553
Q gi|254780434|r 209 FVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSR 249 (362)
Q Consensus 209 ~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~ 249 (362)
++||+==+ |.. .. |..+...+.=|+++++.|+.+
T Consensus 91 ~iPVvGvi-Pai-----k~-A~~~t~~~~IgViaT~~Tvks 124 (269)
T COG0796 91 DIPVVGVI-PAI-----KP-AVALTRNGRIGVIATPATVKS 124 (269)
T ss_pred CCCEEEEC-CCH-----HH-HHHHCCCCEEEEEECCCHHHH
T ss_conf 99989953-154-----99-997313875899955112401
No 469
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase; InterPro: IPR012698 Phosphonates are a class of organophosphorus compounds, characterised by a stable C-P bond, which are found in a variety of biologically produced molecules including antiobiotics, lipids, proteins and polysaccharides . The functions of these molecules include phosphorus storage, cell communication, host recognition and chemical warfare. Phosphoenolpyruvate (PEP) phosphomutase catalyses the reversible conversion of PEP to 3-phosphonopyruvate, forming a stable C-P bond, which is the entry point to all known phosphonate biosynthetic pathways . This entry consists of characterised and predicted PEP phosphomutases found in bacterial and eukayotic species. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this entry, and the functional identification of some more distantly related sequences, such as from Bacteroides fragilis, Treponema denticola, and Clostridium tetani E88 is unknown. PEP phosphomutase forms a modified TIM barrel fold where the eighth alpha helix adopts a different conformation than in the classical TIM barrel fold . The substrate binds in the central channel of the barrel and is anchored to the active site by the Mg(2+) cofactor . In the absence of substrate the active site is acessible to the solvent, while substrate-binding causes a conformational change where a large loop shields the site from solvent . This shielding appears to be required for catalysis to occur.; GO: 0050188 phosphoenolpyruvate mutase activity.
Probab=47.18 E-value=20 Score=15.89 Aligned_cols=100 Identities=16% Similarity=0.205 Sum_probs=48.6
Q ss_pred CEEEEEC-CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHH--HHHHH-HHC
Q ss_conf 5178650-57777488899999876449829998066555323457754463221135-6454246899--99999-740
Q gi|254780434|r 210 VPIFLKI-SPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSG-SPLFLKSTIA--LAKIR-QRV 284 (362)
Q Consensus 210 ~Pi~vKL-sPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG-~~i~~~al~~--i~~i~-~~~ 284 (362)
+||+|== |=+-.+++...++..+++.|+.|+++=.|.=++.+.. .|+ + .||.++.-=+ |+-++ +..
T Consensus 72 vPvLvDgDtGyGNFNnARr~arkle~~GaaG~ClEDk~FPK~NSf-------~gd--rahpLAdi~EFcgkikAcKD~~~ 142 (272)
T TIGR02320 72 VPVLVDGDTGYGNFNNARRLARKLEDRGAAGVCLEDKVFPKMNSF-------FGD--RAHPLADIEEFCGKIKACKDAQR 142 (272)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC-------CCC--CCCCCCCHHHHHCCHHEEECCCC
T ss_conf 016853787987146799999999746863222035557641334-------278--88878881544041002006789
Q ss_pred CCCEE-------EEEECCCCCHHH-HHHHHHCCCCEEEECHH
Q ss_conf 89748-------999678899999-99999839997545278
Q gi|254780434|r 285 GPKIA-------IIGTGGISSTKD-ALDKIMAGANLIQLYSA 318 (362)
Q Consensus 285 ~~~i~-------IIg~GGI~s~~D-a~e~l~aGAs~VQi~Ta 318 (362)
++++- +|+-=|...+-+ |..|-.||||++-|+|-
T Consensus 143 DpdFv~VAR~EAlIag~g~dEAL~RA~AYaeAGADAiliHSr 184 (272)
T TIGR02320 143 DPDFVVVARVEALIAGLGLDEALKRAEAYAEAGADAILIHSR 184 (272)
T ss_pred CCCEEEEHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHC
T ss_conf 975366230477643898668999999988513124556313
No 470
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=46.68 E-value=21 Score=15.84 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=37.2
Q ss_pred CCHH-HHHHHHHHHHHCCCCEEEEEECCCCCHHHH---HHHHHCCCCEEEECHHHHCCC---HHHHHHHHHHHHH
Q ss_conf 5424-689999999740897489996788999999---999983999754527877069---7899999999999
Q gi|254780434|r 269 LFLK-STIALAKIRQRVGPKIAIIGTGGISSTKDA---LDKIMAGANLIQLYSAMIYEG---ISLPKRIIQGLSD 336 (362)
Q Consensus 269 i~~~-al~~i~~i~~~~~~~i~IIg~GGI~s~~Da---~e~l~aGAs~VQi~Tali~~G---p~~~~~I~~~L~~ 336 (362)
++|. +.+++..+|+.+ ++||==---=++|..+ ...+.||+|+|-+.++-|.-. |. ...|...|..
T Consensus 720 LKP~AA~~Li~aLr~~~--dlPIHlHTHDTsG~~~at~~aA~~AGvDivD~A~~smsG~TSQPs-l~si~~al~~ 791 (1149)
T COG1038 720 LKPAAAYRLISALRETV--DLPIHLHTHDTSGNGVATYLAAVEAGVDIVDVAMASMSGLTSQPS-LNSIVAALAG 791 (1149)
T ss_pred CCHHHHHHHHHHHHHHC--CCCEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCC-HHHHHHHHCC
T ss_conf 47699999999998744--884487516788718999999998386366665442148877864-8889999608
No 471
>pfam07476 MAAL_C Methylaspartate ammonia-lyase C-terminus. Methylaspartate ammonia-lyase EC:4.3.1.2 catalyses the second step of fermentation of glutamate. It is a homodimer. This family represents the C-terminal region of Methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the pfam01188. This family represents the catalytic domain and contains a metal binding site.
Probab=46.55 E-value=21 Score=15.83 Aligned_cols=118 Identities=22% Similarity=0.319 Sum_probs=52.5
Q ss_pred CCEEE---CCCCCCC----HHHHHHHHHHHHH-CC-CCC-C----EEEC-CCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 41000---0247777----7889998764100-01-210-0----0110-454246788776555420675526983033
Q gi|254780434|r 108 AIINK---LGFNNAG----YHTVFSRLSKIQP-TS-PIG-I----NLGA-NKDSKDFILDYVSGIRLFFTIASYFTINIS 172 (362)
Q Consensus 108 ~iiN~---~Gl~N~G----~~~~~~~l~~~~~-~~-pi~-v----sI~~-~~~s~~~~~dy~~~~~~~~~~aD~iEiNiS 172 (362)
+++|+ +|.+-.. ++++.+|+.++.. +. |+. + .||- +....+.+.||...+++.. .-+.|.|-
T Consensus 35 ~linnveklG~~Ge~L~~Yv~Wl~~Ri~~lg~~~Y~P~lHiDvYGtiG~~f~~d~~~~adYl~~Le~aa---ap~~L~iE 111 (249)
T pfam07476 35 ALINNVEKLGEKGEKLLDYVKWLKQRIRKLGSEDYRPILHIDVYGTIGDAFDNDLDRMADYLATLEEAA---APFPLRIE 111 (249)
T ss_pred HHHCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCCCHHHHHHHHHHHHHHC---CCCCEEEC
T ss_conf 653179885603067999999999999985599887407887110688880897899999999999856---89724530
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC---CHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 365322110000234321111224445565531268851786505777---7488899999876449829998066
Q gi|254780434|r 173 SPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKISPDL---SEEELDDIAVEVLSHKVEGIIVSNT 245 (362)
Q Consensus 173 CPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKLsPd~---~~~~i~~ia~~a~~~g~dGiv~~NT 245 (362)
.|--.| +.+..-+.+.++++..... . +-|+|-.|. +.+++..+++ +++.-++-+-|
T Consensus 112 gPmd~g-----~r~~Qie~l~~Lr~~L~~~----G----~~v~iVADEWCNT~eDI~~F~d----a~A~~mVQIKt 170 (249)
T pfam07476 112 GPMDAG-----SKEAQIERLAALREKLDRR----G----IGVEIVADEWCNTLEDIREFVD----AGAADMVQIKT 170 (249)
T ss_pred CCCCCC-----CHHHHHHHHHHHHHHHHHC----C----CCCEEEEEHHCCCHHHHHHHHH----CCCCCEEEECC
T ss_conf 775667-----7599999999999999964----8----9847984021089899999996----68866788648
No 472
>PRK00915 2-isopropylmalate synthase; Validated
Probab=46.52 E-value=21 Score=15.83 Aligned_cols=39 Identities=13% Similarity=0.002 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEE-ECCCCCC
Q ss_conf 8517865057777488899999876449829998-0665553
Q gi|254780434|r 209 FVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIV-SNTTLSR 249 (362)
Q Consensus 209 ~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~-~NT~~~~ 249 (362)
++||-+----|.... .+-+-++.++|++.+-. .|-++-|
T Consensus 196 ~v~i~vH~HND~GlA--vANslaAv~AGA~~V~~TvnGiGER 235 (511)
T PRK00915 196 KAIISVHCHNDLGMA--VANSLAAVEGGARQVECTINGIGER 235 (511)
T ss_pred CCEEEEEECCCCCHH--HHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 624899841886899--9999999983905010169602555
No 473
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=46.47 E-value=21 Score=15.82 Aligned_cols=75 Identities=20% Similarity=0.308 Sum_probs=50.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 88517865057777488899999876449829998066555323457754463221135645424689999999740897
Q gi|254780434|r 208 KFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPK 287 (362)
Q Consensus 208 ~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~ 287 (362)
..+||-|-.- .++++. .+.++|+|-|-+-|-. ...+++.-+...++
T Consensus 207 ~~~~IeVEv~------~l~q~~-eal~~gaDiIlLDN~s---------------------------~~~~k~av~~~~~~ 252 (296)
T PRK09016 207 PDVPVEVEVE------NLDELD-QALKAGADIIMLDNFT---------------------------TEQMREAVKRTNGK 252 (296)
T ss_pred CCCCEEEEEC------CHHHHH-HHHHCCCCEEEECCCC---------------------------HHHHHHHHHHHCCC
T ss_conf 9985899968------789999-9996599999988989---------------------------99999999974796
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCEEEECH
Q ss_conf 489996788999999999983999754527
Q gi|254780434|r 288 IAIIGTGGISSTKDALDKIMAGANLIQLYS 317 (362)
Q Consensus 288 i~IIg~GGI~s~~Da~e~l~aGAs~VQi~T 317 (362)
+.+-++|||. .+.+.+|-..|-|.+-++.
T Consensus 253 ~~lEaSGgI~-l~ni~~yA~tGVD~IS~Ga 281 (296)
T PRK09016 253 AALEVSGNVT-LETLREFAETGVDFISVGA 281 (296)
T ss_pred EEEEEECCCC-HHHHHHHHHCCCCEEECCH
T ss_conf 7999878998-9999999972999998887
No 474
>PRK04460 nickel responsive regulator; Provisional
Probab=46.34 E-value=18 Score=16.17 Aligned_cols=11 Identities=36% Similarity=0.616 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q ss_conf 88899999876
Q gi|254780434|r 223 EELDDIAVEVL 233 (362)
Q Consensus 223 ~~i~~ia~~a~ 233 (362)
.++.++++.+.
T Consensus 109 ~~i~~l~~~l~ 119 (139)
T PRK04460 109 KEIKKIADELI 119 (139)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999985
No 475
>TIGR00373 TIGR00373 conserved hypothetical protein TIGR00373; InterPro: IPR005241 This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. .
Probab=46.24 E-value=5.7 Score=19.62 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=12.1
Q ss_pred CCEEEEECCCCCCCC
Q ss_conf 526983033365322
Q gi|254780434|r 164 ASYFTINISSPNTPG 178 (362)
Q Consensus 164 aD~iEiNiSCPNt~g 178 (362)
-||.|.|+|||.-..
T Consensus 124 ~eAme~nFtCP~CG~ 138 (168)
T TIGR00373 124 DEAMELNFTCPECGA 138 (168)
T ss_pred HHHHCCCCCCCCCCC
T ss_conf 223116798833132
No 476
>PTZ00066 pyruvate kinase; Provisional
Probab=46.01 E-value=21 Score=15.77 Aligned_cols=109 Identities=19% Similarity=0.226 Sum_probs=48.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 68851786505777748889999987644982999806655532345775446322113564542468999999974089
Q gi|254780434|r 207 GKFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGP 286 (362)
Q Consensus 207 ~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~ 286 (362)
..+++|++|+---..-+++++|+++ +|||.+. |-++....... --|...+.|-......+
T Consensus 249 g~~~~IIaKIE~~~av~NldeIi~~-----sDgIMVA-----RGDLgvEip~e---------~vp~~QK~II~~c~~~g- 308 (513)
T PTZ00066 249 GKHIKIIPKIENIEGLINFDKILAE-----SDGIMVA-----RGDLGMEIPPE---------KVFLAQKLMISKCNLQG- 308 (513)
T ss_pred CCCCEEEEEECCHHHHHCHHHHHHH-----CCEEEEE-----CCCCCCCCCHH---------HHHHHHHHHHHHHHHCC-
T ss_conf 9864589984376556589999985-----8989995-----68542426988---------86899999999999759-
Q ss_pred CEEEEEECCC------------CCHHHHHHHHHCCCCEEEEC--HHHHCCC---HHHHHHHHHHHHH
Q ss_conf 7489996788------------99999999998399975452--7877069---7899999999999
Q gi|254780434|r 287 KIAIIGTGGI------------SSTKDALDKIMAGANLIQLY--SAMIYEG---ISLPKRIIQGLSD 336 (362)
Q Consensus 287 ~i~IIg~GGI------------~s~~Da~e~l~aGAs~VQi~--Tali~~G---p~~~~~I~~~L~~ 336 (362)
+ |+|-.-=. -...|+..-+.-|||+|++. ||.--.- -....+|.++-..
T Consensus 309 K-PVIvATqmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLSgETA~GkyPveaV~~m~~I~~~aE~ 374 (513)
T PTZ00066 309 K-PIITATQMLESMIKNPRPTRAESTDVANAVLDGSDCVMLSGETAGGKFPVEAVTIMSKLCFEAEA 374 (513)
T ss_pred C-CEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9-69997425777404999871667789999984677788735224777989999999999999870
No 477
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=45.85 E-value=21 Score=15.76 Aligned_cols=11 Identities=18% Similarity=0.226 Sum_probs=6.2
Q ss_pred HCCCCCCEEEC
Q ss_conf 00121000110
Q gi|254780434|r 132 PTSPIGINLGA 142 (362)
Q Consensus 132 ~~~pi~vsI~~ 142 (362)
.+.|++..+++
T Consensus 136 ~~vpligf~gg 146 (339)
T PRK06252 136 EDVPIIAGMTG 146 (339)
T ss_pred CCCCEEEECCC
T ss_conf 98617964677
No 478
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=45.84 E-value=21 Score=15.76 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 4542468999999974089748999678899999999998399-975452787706978999999999999998389
Q gi|254780434|r 268 PLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGA-NLIQLYSAMIYEGISLPKRIIQGLSDFLNKENE 343 (362)
Q Consensus 268 ~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGA-s~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~G~ 343 (362)
|+.+-...-.+++++.+ ++||.+.=.+.+..|+.+++.+|| |.||+-.. ..-|..-..+|. ++.+..|.
T Consensus 220 P~~~~d~~~~~~l~~~~--~~pI~~~E~~~~~~~~~~~i~~~a~d~~~~d~~-~~GGit~~~kia----~~A~~~gi 289 (355)
T cd03321 220 PTLQHDYEGHARIASAL--RTPVQMGENWLGPEEMFKALSAGACDLVMPDLM-KIGGVTGWLRAS----ALAEQAGI 289 (355)
T ss_pred CCCCCCHHHHHHHHHCC--CCCEEECCCCCCHHHHHHHHHCCCCCCCCCCCC-EECCHHHHHHHH----HHHHHCCC
T ss_conf 89988999999998548--999993788899999999998499961036745-207799999999----99998599
No 479
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. A form of threonine dehydratase with two copies of the C-terminal domain is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity.
Probab=45.80 E-value=21 Score=15.75 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=29.0
Q ss_pred HHHHHHHHC-------CCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 798887403-------675241020013687899886268842555410000247777788999876410
Q gi|254780434|r 69 EVPIELLKL-------GFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTVFSRLSKIQ 131 (362)
Q Consensus 69 ~~~~~l~~~-------G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~~~~l~~~~ 131 (362)
|.+....+. |=|++.-|=. .--+.-||.=|+ +|.+..+...+.+.|++-+
T Consensus 141 Ei~ed~pd~D~viVPVGGGGLISGv~-~a~K~~~P~Vkv------------IGV~aE~ap~m~~Sl~~Gk 197 (381)
T TIGR01127 141 EIMEDLPDVDTVIVPVGGGGLISGVA-SAAKKLNPEVKV------------IGVEAEGAPSMVESLREGK 197 (381)
T ss_pred HHHHCCCCCCEEEEEECCCCHHHHHH-HHHHHHCCCCEE------------EEEECCCCHHHHHHHHCCC
T ss_conf 99964798137998417871287999-999872899479------------9860278558999985199
No 480
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=45.61 E-value=17 Score=16.35 Aligned_cols=35 Identities=37% Similarity=0.589 Sum_probs=25.7
Q ss_pred CCCCCEEEE---------------ECCCCCEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 988626884---------------25554100002477777889998764100
Q gi|254780434|r 95 NPRPRVFRL---------------TKDRAIINKLGFNNAGYHTVFSRLSKIQP 132 (362)
Q Consensus 95 Np~PR~~r~---------------~~~~~iiN~~Gl~N~G~~~~~~~l~~~~~ 132 (362)
|..||++.. -.|=++ +||||-|-=.+++++.+.++
T Consensus 134 n~AP~~ae~G~~GE~r~~~LELKllADVGL---vGfPNAGKSTLLs~~S~AkP 183 (296)
T TIGR02729 134 NRAPRFAEPGEPGEEREVRLELKLLADVGL---VGFPNAGKSTLLSAISNAKP 183 (296)
T ss_pred CCCCCCCCCCCCCCEEEEEEEEEEEEEEEE---ECCCCCCHHHHHHHHHCCCC
T ss_conf 468852458898855899997666620210---35788746888888762788
No 481
>pfam03841 SelA L-seryl-tRNA selenium transferase.
Probab=45.08 E-value=19 Score=16.13 Aligned_cols=110 Identities=17% Similarity=0.271 Sum_probs=49.6
Q ss_pred CCCEEECCC-C---CCCHHHHHHHHHCCCCEEECCCC-----CCCCCCCCCCCCE-EEE-ECCCCCEEECCCCC-CCHHH
Q ss_conf 997485346-8---88677988874036752410200-----1368789988626-884-25554100002477-77788
Q gi|254780434|r 55 SNPLGMAAG-Y---DKNAEVPIELLKLGFGFVEIGTV-----TPHPQAGNPRPRV-FRL-TKDRAIINKLGFNN-AGYHT 122 (362)
Q Consensus 55 ~nPiglAaG-~---dk~~~~~~~l~~~G~G~v~~kti-----t~~p~~GNp~PR~-~r~-~~~~~iiN~~Gl~N-~G~~~ 122 (362)
..-|+++=| + ...-...+-+...|.--+|+||. .-..+..|+.--+ ++. +....+ .||-. ...+.
T Consensus 85 g~evivSRGelVeiGgsfRiPdim~~sGa~LvEVGtTNrT~l~DYe~AI~e~Ta~llkVH~SN~~i---~GFt~~v~~~e 161 (367)
T pfam03841 85 GKEVIISRGELVEIGGSFRIPDIMKQSGARLVEVGTTNRTHLKDYEQAINENTALLMKVHTSNYRI---QGFTKEVSLAE 161 (367)
T ss_pred CCCEEEECCEEECCCCCCCCHHHHHHCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCCCEE---CCCCCCCCHHH
T ss_conf 890577555451238754408999965978998256688898999987082461899994265122---37467799999
Q ss_pred HHHHHHHHHHCCCCCCEEECCCC---------CHHHHHHHHHHHHHHCCCCCEEEEE----CCCCC
Q ss_conf 99987641000121000110454---------2467887765554206755269830----33365
Q gi|254780434|r 123 VFSRLSKIQPTSPIGINLGANKD---------SKDFILDYVSGIRLFFTIASYFTIN----ISSPN 175 (362)
Q Consensus 123 ~~~~l~~~~~~~pi~vsI~~~~~---------s~~~~~dy~~~~~~~~~~aD~iEiN----iSCPN 175 (362)
+.+--+ +.+.|+++-+|...- .|..+++ .+..++|.+... +..|.
T Consensus 162 l~~la~--~~~ip~i~DlGSG~l~d~~~~gl~~Ep~v~~------~l~~GaDlV~FSGDKLLGGPQ 219 (367)
T pfam03841 162 LVALGK--EHGLPVYYDLGSGSLVDLSQYGLPKEPTVQE------LLALGVDLVSFSGDKLLGGPQ 219 (367)
T ss_pred HHHHHH--HCCCCEEEECCCCCEECCCCCCCCCCCCHHH------HHHCCCCEEEEECCCCCCCCC
T ss_conf 999998--7699679975866311220017999998999------997399889986764568985
No 482
>PRK01002 nickel responsive regulator; Provisional
Probab=45.07 E-value=21 Score=15.81 Aligned_cols=11 Identities=9% Similarity=0.341 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q ss_conf 88899999876
Q gi|254780434|r 223 EELDDIAVEVL 233 (362)
Q Consensus 223 ~~i~~ia~~a~ 233 (362)
.++.++++.+.
T Consensus 110 ~~i~~l~~~l~ 120 (141)
T PRK01002 110 SEIRELTDKLT 120 (141)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999985
No 483
>PRK00630 nickel responsive regulator; Provisional
Probab=45.06 E-value=18 Score=16.21 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q ss_conf 88899999876
Q gi|254780434|r 223 EELDDIAVEVL 233 (362)
Q Consensus 223 ~~i~~ia~~a~ 233 (362)
.++.+++..+.
T Consensus 115 ~~I~~la~~l~ 125 (143)
T PRK00630 115 FEIERLQLEIG 125 (143)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999986
No 484
>pfam01964 ThiC ThiC family. ThiC is found within the thiamine biosynthesis operon. ThiC is involved in pyrimidine biosynthesis. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.
Probab=44.99 E-value=22 Score=15.67 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=12.1
Q ss_pred CCCCHHHHHHHHHCCCCEEEECHH
Q ss_conf 889999999999839997545278
Q gi|254780434|r 295 GISSTKDALDKIMAGANLIQLYSA 318 (362)
Q Consensus 295 GI~s~~Da~e~l~aGAs~VQi~Ta 318 (362)
-|.++--+.-.-.+|||.+---|.
T Consensus 303 HIt~AIGgAiAa~~GAdfLCYVTP 326 (421)
T pfam01964 303 HITSAIGGAIAAAAGADFLCYVTP 326 (421)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 889999999998647763750580
No 485
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit; InterPro: IPR005969 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite .; GO: 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=44.91 E-value=22 Score=15.66 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=24.0
Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEE
Q ss_conf 1268851786505777748889999987644982-999
Q gi|254780434|r 205 KTGKFVPIFLKISPDLSEEELDDIAVEVLSHKVE-GII 241 (362)
Q Consensus 205 ~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~d-Giv 241 (362)
..-...||.|..+ ..-+.+|.+.+...|+| |+.
T Consensus 240 p~i~~~PiGv~~T----~~f~~~i~~~l~~~G~d~G~a 273 (562)
T TIGR01278 240 PYITETPIGVNAT----RRFIREIAALLNQAGADKGMA 273 (562)
T ss_pred CHHHCCCCCHHHH----HHHHHHHHHHHHHCCCCCCCC
T ss_conf 5012177766889----999999999998648875766
No 486
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit; InterPro: IPR004486 This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.; GO: 0006730 one-carbon compound metabolic process.
Probab=44.86 E-value=22 Score=15.66 Aligned_cols=31 Identities=19% Similarity=0.256 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHH-HHCCC----CEEEEEECCCCCHHHH
Q ss_conf 424689999999-74089----7489996788999999
Q gi|254780434|r 270 FLKSTIALAKIR-QRVGP----KIAIIGTGGISSTKDA 302 (362)
Q Consensus 270 ~~~al~~i~~i~-~~~~~----~i~IIg~GGI~s~~Da 302 (362)
...|...+..+| ..+.+ ++|| +-|=+++--|
T Consensus 289 iefsi~~m~R~Rl~gLKGD~dlnmP~--SSGTTNAwGa 324 (401)
T TIGR00381 289 IEFSIDAMERIRLSGLKGDEDLNMPM--SSGTTNAWGA 324 (401)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCHHHHHH
T ss_conf 88999899988753136863036766--6541102221
No 487
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=44.50 E-value=22 Score=15.62 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCC-HHHHHHHHHHHHHCCCCCCEE
Q ss_conf 8867798887403675241020013687899886268842555410000247777-788999876410001210001
Q gi|254780434|r 65 DKNAEVPIELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAG-YHTVFSRLSKIQPTSPIGINL 140 (362)
Q Consensus 65 dk~~~~~~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G-~~~~~~~l~~~~~~~pi~vsI 140 (362)
|.-.+.++.+.++|..++-+=.|..+ . .+. .+-.++..| +...++.+|+..++..|++-+
T Consensus 62 D~L~~eie~~~~lGI~av~LFgi~~~-----K------d~~-----gs~a~~~~~lv~~air~iK~~~pdl~vi~DV 122 (323)
T PRK13384 62 SALADEIERLYALGIRYVMPFGISHH-----K------DAK-----GSDTWDDNGLLARMVRTIKAAVPEMMVIPDI 122 (323)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCC-----C------CCC-----CCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 99999999999789968983699988-----9------976-----5656687657999999999867982999750
No 488
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=43.60 E-value=23 Score=15.53 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=72.6
Q ss_pred HCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC----CCCCCHHHHHHHHHHHHHC
Q ss_conf 067552698303336532211000023432111122444556553126885178650----5777748889999987644
Q gi|254780434|r 160 FFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVPIFLKI----SPDLSEEELDDIAVEVLSH 235 (362)
Q Consensus 160 ~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~~~~~~~~~~~~Pi~vKL----sPd~~~~~i~~ia~~a~~~ 235 (362)
..+.+-|+|+=+ +|..-..+.+ .++.++.++.+...... ...+|-+++ .-+.+.++..++++.+.+.
T Consensus 83 ~~~nV~Y~Elr~-~P~~~~~~~l----~~~~~~~a~~~~~~~a~----~~~~i~~~lI~~~~R~~~~e~a~~~~~~a~~~ 153 (325)
T cd01320 83 AADGVVYAEIRF-SPQLHTRRGL----SFDEVVEAVLRGLDEAE----AEFGIKARLILCGLRHLSPESAQETLELALKY 153 (325)
T ss_pred HHCCCEEEEEEE-CHHHHHCCCC----CHHHHHHHHHHHHHHHH----HCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 986974886673-5888740698----67777999999998765----00793699987526779999999999999971
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH-CCCCEEE
Q ss_conf 982999806655532345775446322113564542468999999974089748999678899999999998-3999754
Q gi|254780434|r 236 KVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIM-AGANLIQ 314 (362)
Q Consensus 236 g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~-aGAs~VQ 314 (362)
.-++|+.++-.++ +.+ .+.... .......+ ..+-+++ +-+|=...++.+.+.+. .||+=++
T Consensus 154 ~~~~vvGidl~G~-----------E~~----~~~~~f-~~~f~~a~-~~gl~~t-~HaGE~~~~~~v~~ai~~l~~~RIG 215 (325)
T cd01320 154 RDKGVVGFDLAGD-----------EVG----FPPEKF-VRAFQRAR-EAGLRLT-AHAGEAGGPESVRDALDLLGAERIG 215 (325)
T ss_pred CCCCEEEEECCCC-----------CCC----CCHHHH-HHHHHHHH-HCCCEEE-EECCCCCCHHHHHHHHHCCCCCEEC
T ss_conf 6787788425786-----------678----986899-99999999-8598456-6458889828899998604986432
Q ss_pred ECHHHHCCCHHHHHHHHH
Q ss_conf 527877069789999999
Q gi|254780434|r 315 LYSAMIYEGISLPKRIIQ 332 (362)
Q Consensus 315 i~Tali~~Gp~~~~~I~~ 332 (362)
=|..+ .+.|.+++.+.+
T Consensus 216 HG~~~-~~d~~l~~~l~~ 232 (325)
T cd01320 216 HGIRA-IEDPELVKRLAE 232 (325)
T ss_pred CCCCC-CCCHHHHHHHHH
T ss_conf 64113-469999999986
No 489
>PRK02271 methylenetetrahydromethanopterin reductase; Provisional
Probab=43.57 E-value=23 Score=15.53 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=11.7
Q ss_pred CCCCEEEECCEECCCCEEECCC
Q ss_conf 9631168887335997485346
Q gi|254780434|r 42 DPRLNTKVAGISLSNPLGMAAG 63 (362)
Q Consensus 42 ~~~L~~~~~Gl~~~nPiglAaG 63 (362)
...|.+-+.-.-+.||+.+|..
T Consensus 55 ~I~lGt~V~~~~~r~P~~~A~~ 76 (324)
T PRK02271 55 TIKLGPGVTNPYTRSPAITASA 76 (324)
T ss_pred CEEEEEEECCCCCCCHHHHHHH
T ss_conf 3288887545888899999999
No 490
>pfam00311 PEPcase Phosphoenolpyruvate carboxylase.
Probab=43.52 E-value=23 Score=15.52 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 42468999999974089748999678
Q gi|254780434|r 270 FLKSTIALAKIRQRVGPKIAIIGTGG 295 (362)
Q Consensus 270 ~~~al~~i~~i~~~~~~~i~IIg~GG 295 (362)
.|+|......+++. |---.+||.|.
T Consensus 369 lPRAI~ft~alYSi-G~PPellG~~a 393 (500)
T pfam00311 369 LPRAITFTGALYSI-GLPPELLGFGA 393 (500)
T ss_pred CCCHHHHHHHHHHC-CCCHHHHCCHH
T ss_conf 87334334677846-89805307215
No 491
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=43.28 E-value=23 Score=15.50 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=25.8
Q ss_pred CEEEEEECCCCCHHHHHHHHH--CCCCEEEECHHHHCCCH
Q ss_conf 748999678899999999998--39997545278770697
Q gi|254780434|r 287 KIAIIGTGGISSTKDALDKIM--AGANLIQLYSAMIYEGI 324 (362)
Q Consensus 287 ~i~IIg~GGI~s~~Da~e~l~--aGAs~VQi~Tali~~Gp 324 (362)
+.|.+=.||+ +++.+.+.+. .....|-+.|++=.+|-
T Consensus 152 ~~~~~LAGGL-~p~NV~~a~~~~~~p~gVDvsSGVE~~G~ 190 (207)
T PRK13958 152 DIPYLIAGGI-NSENIQTVNQLKLSHQGYDLASGIEVNGR 190 (207)
T ss_pred CCCEEEEECC-CHHHHHHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 8986999469-88999999963579998982165678898
No 492
>TIGR00067 glut_race glutamate racemase; InterPro: IPR004391 Glutamate racemase (5.1.1.3 from EC) provides the (R)-glutamic acid required for cell wall biosynthesis. It converts L-glutamate to D-glutamate during peptidoglycan biosynthesis. The most closely related proteins differing in function are aspartate racemases.; GO: 0008881 glutamate racemase activity, 0009252 peptidoglycan biosynthetic process.
Probab=43.16 E-value=23 Score=15.49 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=57.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCC------------------CCCCCCCCCCCCC
Q ss_conf 26885178650577774888999998764-4982999806655532345------------------7754463221135
Q gi|254780434|r 206 TGKFVPIFLKISPDLSEEELDDIAVEVLS-HKVEGIIVSNTTLSRKGVQ------------------CSDNHEQDGGLSG 266 (362)
Q Consensus 206 ~~~~~Pi~vKLsPd~~~~~i~~ia~~a~~-~g~dGiv~~NT~~~~~~~~------------------~~~~~~~~GGlSG 266 (362)
..-..||.==+-|+. ..+++...+ .+.=|+++||+|+.+.... ....-.|.+-++
T Consensus 84 ~~f~~PvvGVi~P~~-----~aa~~~~~~~~~~vlviaT~~T~~s~~~~~~~~~~~~d~~V~~LA~p~lV~l~E~~~~~- 157 (262)
T TIGR00067 84 RNFDFPVVGVIEPAV-----KAAIRLVKNKRKRVLVIATNATIKSNAYHEAVKEIANDLLVEQLACPELVPLVEEGEFE- 157 (262)
T ss_pred HHCCCCEEEEECCCH-----HHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHCCC-
T ss_conf 772898789766651-----68887434017705885044678888999999860850237641576303777400244-
Q ss_pred CCCCHHHHHHHHHHHHH-----CCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 64542468999999974-----0897489996788999999999983999754527877069789999999999999983
Q gi|254780434|r 267 SPLFLKSTIALAKIRQR-----VGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFLNKE 341 (362)
Q Consensus 267 ~~i~~~al~~i~~i~~~-----~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l~~~ 341 (362)
.+.++++++..-.- .+.+.-|.||-==---+..++.+ ......++- +-+...+.+.+.++|+.+
T Consensus 158 ---~~~~~~~lk~~l~pl~~l~~~~d~vvLGCTHfp~L~~~i~~~------l~~~v~l~~--~PL~~~~~~~~~~~L~~~ 226 (262)
T TIGR00067 158 ---EDYALECLKAYLSPLLRLDTQIDTVVLGCTHFPLLKEEIEQY------LGEHVRLVS--SPLGVHTAKRLKKLLEHK 226 (262)
T ss_pred ---HHHHHHHHHHHCCCHHHHCCCCCEEEECCCCHHHHHHHHHHH------CCCCCEECC--CHHHHHHHHHHHHHHHHH
T ss_conf ---158999999860526774289987997874347789999987------178713227--416789999999999872
Q ss_pred C
Q ss_conf 8
Q gi|254780434|r 342 N 342 (362)
Q Consensus 342 G 342 (362)
|
T Consensus 227 ~ 227 (262)
T TIGR00067 227 G 227 (262)
T ss_pred C
T ss_conf 5
No 493
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=42.99 E-value=23 Score=15.47 Aligned_cols=12 Identities=8% Similarity=0.014 Sum_probs=5.5
Q ss_pred HHHHHCCCCEEE
Q ss_conf 987644982999
Q gi|254780434|r 230 VEVLSHKVEGII 241 (362)
Q Consensus 230 ~~a~~~g~dGiv 241 (362)
+.|.+.|+++|+
T Consensus 97 ~~A~~~ga~~Iv 108 (177)
T cd01712 97 KLAEELGADAIV 108 (177)
T ss_pred HHHHHCCCCEEE
T ss_conf 999986998998
No 494
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase; InterPro: IPR007566 This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea..
Probab=42.99 E-value=23 Score=15.47 Aligned_cols=100 Identities=20% Similarity=0.223 Sum_probs=66.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCE-EEEEEC-----CCCCHHHHHHHHH--CCCCEEEECHHHHCC-CHHHHHHH
Q ss_conf 32211356454246899999997408974-899967-----8899999999998--399975452787706-97899999
Q gi|254780434|r 260 QDGGLSGSPLFLKSTIALAKIRQRVGPKI-AIIGTG-----GISSTKDALDKIM--AGANLIQLYSAMIYE-GISLPKRI 330 (362)
Q Consensus 260 ~~GGlSG~~i~~~al~~i~~i~~~~~~~i-~IIg~G-----GI~s~~Da~e~l~--aGAs~VQi~Tali~~-Gp~~~~~I 330 (362)
-+|=++---.-..|+.-++++.+.++-.+ ||||+| |=.|++-+-+++. .|.-.-=|=|||=|. .-+=+++-
T Consensus 227 nYG~~~AvL~~K~Al~~l~elsee~g~~~yPI~G~GS~PFRG~lsP~n~~~~~~EY~gv~TfTvQSAFkYDy~~~~V~~~ 306 (549)
T TIGR02751 227 NYGMIAAVLLNKYALSRLYELSEETGISIYPIIGAGSLPFRGHLSPENIERVLDEYPGVYTFTVQSAFKYDYPKEEVKKA 306 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCHHHHHHH
T ss_conf 11458999999999988544545406872430168788778878888999999750687416874101212875899999
Q ss_pred HHHHHHHH-----HHCCCCC--HHHHHCCCCHHHHH
Q ss_conf 99999999-----9838997--78961697526641
Q gi|254780434|r 331 IQGLSDFL-----NKENEVN--FENIRGSYTEYWAK 359 (362)
Q Consensus 331 ~~~L~~~l-----~~~G~~s--i~e~iG~~~~~~~~ 359 (362)
++.+++.. ...+... +-++++...++|++
T Consensus 307 I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 342 (549)
T TIGR02751 307 IRLINEKAPEAPEILIDDEEEIIVEIIEIYAKRYQK 342 (549)
T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999986053576767672589999999999999889
No 495
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=42.99 E-value=15 Score=16.86 Aligned_cols=30 Identities=33% Similarity=0.440 Sum_probs=18.5
Q ss_pred HHHHHHHHCC--CCEEECCCCCCCCCCCCCCC
Q ss_conf 7988874036--75241020013687899886
Q gi|254780434|r 69 EVPIELLKLG--FGFVEIGTVTPHPQAGNPRP 98 (362)
Q Consensus 69 ~~~~~l~~~G--~G~v~~ktit~~p~~GNp~P 98 (362)
++++.+++-| +-||-+|..|..|.+.||.=
T Consensus 311 kYIK~lFe~GAPADFvLIGATTr~P~eINpAL 342 (616)
T TIGR02903 311 KYIKKLFEEGAPADFVLIGATTRDPEEINPAL 342 (616)
T ss_pred HHHHHHHCCCCCCCEEEECCCCCCHHHCCHHH
T ss_conf 58888522688825687266158824405123
No 496
>pfam03740 PdxJ Pyridoxal phosphate biosynthesis protein PdxJ. Members of this family belong to the PdxJ family that catalyses the condensation of 1-deoxy-d-xylulose-5-phosphate (DXP) and 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form pyridoxine 5'-phosphate (PNP). This reaction is involved in de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate.
Probab=42.85 E-value=19 Score=16.11 Aligned_cols=14 Identities=7% Similarity=-0.109 Sum_probs=7.3
Q ss_pred HHHHHHCCCCEEEE
Q ss_conf 99876449829998
Q gi|254780434|r 229 AVEVLSHKVEGIIV 242 (362)
Q Consensus 229 a~~a~~~g~dGiv~ 242 (362)
++.+.+.|+|.|=+
T Consensus 138 i~~a~~~Gad~VEl 151 (239)
T pfam03740 138 IEAAKIVGADRIEL 151 (239)
T ss_pred HHHHHHCCCCEEEE
T ss_conf 99999809299985
No 497
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; InterPro: IPR011843 This entry describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.; GO: 0051539 4 iron 4 sulfur cluster binding, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=42.78 E-value=24 Score=15.45 Aligned_cols=142 Identities=18% Similarity=0.085 Sum_probs=79.6
Q ss_pred HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 0012100011045424678877655542067552698303336532211----000023432111122444556553126
Q gi|254780434|r 132 PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLR----SLQKKKNLERLLIHVMQTREEEKIKTG 207 (362)
Q Consensus 132 ~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~----~~~~~~~l~~~l~~v~~~~~~~~~~~~ 207 (362)
.+.|+-+|+..-...=|.+.+++++.-++. ||.|||=..-=...+.+ .|=..++|++--..|.++|.+. +..
T Consensus 144 ~g~PltLN~V~HR~Ni~~i~~~i~La~~L~--AdrvE~A~~QyYGWA~~NR~aLlPt~~Ql~~a~r~V~~aRer~--~g~ 219 (363)
T TIGR02109 144 AGLPLTLNFVLHRHNIDQIPEIIELAIELG--ADRVELATTQYYGWALLNRAALLPTREQLEEATRIVEEARERL--KGQ 219 (363)
T ss_pred CCCCEEEEHCCCCCHHHHHHHHHHHHHHCC--CCEEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH--HHC
T ss_conf 189817602002420213678999998638--9848887402022567745424898899999999999999998--607
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 88517865057777488899999876449829998066555323457754463221135645424689999999740
Q gi|254780434|r 208 KFVPIFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRV 284 (362)
Q Consensus 208 ~~~Pi~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~ 284 (362)
.+.+.++=++||-.+ +-.+ .+ -.|. |=+..|=|-+-.-++...-...+ ++|=+.++..+|..|.+-+...
T Consensus 220 ~~~~~l~yV~PDYY~-~RPK---~C-MgGW-G~~fl~VTP~G~vLPCHAA~~iP-~l~F~nV~~~~L~~IW~~S~~F 289 (363)
T TIGR02109 220 GNPLSLDYVVPDYYA-ERPK---AC-MGGW-GRVFLNVTPAGKVLPCHAAEQIP-GLSFPNVREHSLSEIWYESEGF 289 (363)
T ss_pred CCCCEEEEECCCCHH-CCCC---CC-CCCC-CCCCEEECCCCCCCCCHHHHHCC-CCCCCCCCCCCHHHHHHHHHHH
T ss_conf 998236763487121-0687---55-6860-12223247788717883465378-9677642344278874200000
No 498
>pfam03662 Glyco_hydro_79n Glycosyl hydrolase family 79, N-terminal domain. Family of endo-beta-N-glucuronidase, or heparanase. Heparan sulfate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulfate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular micro-environment. Heparanase degrades HS at specific intra-chain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N-terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumour cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity.
Probab=42.39 E-value=24 Score=15.41 Aligned_cols=75 Identities=21% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH-HCCCCEEEECHHHHCC-----CHHHHHHHHH-HHHHHHHHCCCCCHH
Q ss_conf 99999997408974899967889999999999-8399975452787706-----9789999999-999999983899778
Q gi|254780434|r 275 IALAKIRQRVGPKIAIIGTGGISSTKDALDKI-MAGANLIQLYSAMIYE-----GISLPKRIIQ-GLSDFLNKENEVNFE 347 (362)
Q Consensus 275 ~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l-~aGAs~VQi~Tali~~-----Gp~~~~~I~~-~L~~~l~~~G~~si~ 347 (362)
.++..+++....+-.++|=||.++.+=..+|+ ..|-..|++.|=.+|. .|.++++|.+ ..-+.+.+. |+.+.
T Consensus 199 ~il~~~y~~~~~~P~v~gPgg~~~~~w~~~fL~~sg~~~vD~vThH~Ynlg~g~d~~lv~kiLdP~~LD~~~~~-~~~l~ 277 (320)
T pfam03662 199 SIVKKIYQNSRPKPLVIAPGGFFDQQWYTELLDKTGPSVLDVVTHHIYNLGPGVDPHLIDKILDPSYLDGEAKT-FKDLQ 277 (320)
T ss_pred HHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHCCCCHHHHHHHHH-HHHHH
T ss_conf 99999840557788456788864289999999752897436887678547998777788761591777888999-99999
Q ss_pred HHH
Q ss_conf 961
Q gi|254780434|r 348 NIR 350 (362)
Q Consensus 348 e~i 350 (362)
+++
T Consensus 278 ~~v 280 (320)
T pfam03662 278 KII 280 (320)
T ss_pred HHH
T ss_conf 999
No 499
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=42.31 E-value=24 Score=15.40 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=0.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCC-------------CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 78650577774888999998764498299980665-------------55323457754463221135645424689999
Q gi|254780434|r 212 IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTT-------------LSRKGVQCSDNHEQDGGLSGSPLFLKSTIALA 278 (362)
Q Consensus 212 i~vKLsPd~~~~~i~~ia~~a~~~g~dGiv~~NT~-------------~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~ 278 (362)
|++|+| .+.+-+..+-..-.|. +-+|-| -...-+.-..++..--|..|.. ....++
T Consensus 94 i~IKIP--~T~eGl~Ai~~L~~eG-----I~~NvTLiFS~~QAl~aa~aga~~iSpFvgRi~D~~~d~~~----~I~~~~ 162 (239)
T COG0176 94 IVIKIP--ATWEGLKAIKALEAEG-----IKTNVTLIFSAAQALLAAEAGATYISPFVGRIDDWGIDGML----GIAEAR 162 (239)
T ss_pred EEEEEC--CCHHHHHHHHHHHHCC-----CEEEEEEEECHHHHHHHHHHCCEEEEEECCHHHHHCCCCHH----HHHHHH
T ss_conf 389948--8887899999999789-----70658888468999999982892897512307761668268----999999
Q ss_pred HHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHH-----HHHHHHHHHHHHH
Q ss_conf 9997408974899967889999999999839997545278770697899-----9999999999998
Q gi|254780434|r 279 KIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLP-----KRIIQGLSDFLNK 340 (362)
Q Consensus 279 ~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~-----~~I~~~L~~~l~~ 340 (362)
+++..+.....=+.+=++....+++.-.++|||.+-+--.++-+-...- ....+++++|++.
T Consensus 163 ~iy~~y~~~~~~t~vas~~~~~~~~~~~l~G~d~~Tip~~~l~~l~~~~~~~~~~l~~eGI~~F~~D 229 (239)
T COG0176 163 EIYDYYKQHGAKTLVASARFPNHVYIAALAGADVLTIPPDLLKQLLKHGGAMAVPLLDEGIRKFAKD 229 (239)
T ss_pred HHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 9999736045447776677287899999808982248999999998534210027899999999999
No 500
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.61 E-value=24 Score=15.33 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHC
Q ss_conf 99876449829998066555323457754463221135645424689999999740897489996788999999999983
Q gi|254780434|r 229 AVEVLSHKVEGIIVSNTTLSRKGVQCSDNHEQDGGLSGSPLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMA 308 (362)
Q Consensus 229 a~~a~~~g~dGiv~~NT~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~a 308 (362)
++.+.++|+|-|-+-| ..|--++-...+.+...+++.+-++|||.- +.+.+|-..
T Consensus 211 ~~ea~~~gaDiImLDN------------------------ms~e~~~~av~~~~~~~~~v~lEaSGgI~~-~ni~~yA~t 265 (288)
T PRK07896 211 LDEVLAEGAELILLDN------------------------FPVWQTQEAVQRRDARAPTVLLESSGGLTL-DTAAAYAAT 265 (288)
T ss_pred HHHHHHCCCCEEEECC------------------------CCHHHHHHHHHHHHCCCCCEEEEEECCCCH-HHHHHHHHC
T ss_conf 9998746999999779------------------------999999999999837698748999889999-999999965
Q ss_pred CCCEEEECH
Q ss_conf 999754527
Q gi|254780434|r 309 GANLIQLYS 317 (362)
Q Consensus 309 GAs~VQi~T 317 (362)
|.|.+-++.
T Consensus 266 GVD~IS~G~ 274 (288)
T PRK07896 266 GVDYLAVGA 274 (288)
T ss_pred CCCEEECCH
T ss_conf 999998785
Done!