HHsearch alignment for GI: 254780434 and conserved domain: pfam01180
>pfam01180 DHO_dh Dihydroorotate dehydrogenase.
Probab=100.00 E-value=0 Score=503.61 Aligned_cols=277 Identities=38% Similarity=0.616 Sum_probs=231.8
Q ss_pred CEEEECCEECCCCEEECCCCCCCHHHH-HHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCHHHH
Q ss_conf 116888733599748534688867798-8874036752410200136878998862688425554100002477777889
Q gi|254780434|r 45 LNTKVAGISLSNPLGMAAGYDKNAEVP-IELLKLGFGFVEIGTVTPHPQAGNPRPRVFRLTKDRAIINKLGFNNAGYHTV 123 (362)
Q Consensus 45 L~~~~~Gl~~~nPiglAaG~dk~~~~~-~~l~~~G~G~v~~ktit~~p~~GNp~PR~~r~~~~~~iiN~~Gl~N~G~~~~ 123 (362)
T Consensus 2 L~t~~~Gl~~~nPi~lAsG~~~~~~~~~~~~~~~g~G~vv~ktit~~~~~gnp~Pr~~~~~--~~~~n~~G~~n~g~~~~ 79 (290)
T pfam01180 2 LAVKIPGLKFKNPIGLASGFDKFGEEALKWLALGKFGAIEIKSVTPEPQPGNPTPRVFRLP--EGVLNAMGLNNPGLDAV 79 (290)
T ss_pred EEEEECCEECCCCCEECCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEECC--CHHHHHCCCCCCHHHHH
T ss_conf 5699899887998788867688869999998718967799483485626699987799837--01442156577307999
Q ss_pred HHHHHHHH----HCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99876410----00121000110454246788776555420675526983033365322110000234321111224445
Q gi|254780434|r 124 FSRLSKIQ----PTSPIGINLGANKDSKDFILDYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTR 199 (362)
Q Consensus 124 ~~~l~~~~----~~~pi~vsI~~~~~s~~~~~dy~~~~~~~~~~aD~iEiNiSCPNt~g~~~~~~~~~l~~~l~~v~~~~ 199 (362)
T Consensus 80 ~~~~~~~~~~~~~~~~vi~si~g~-----~~~d~~~~~~~~~~~ad~iElNiScPn~~~~~~~~~~~~~~~~i~~~v--- 151 (290)
T pfam01180 80 LEELLKRRKEYPRPLGIILSKAGS-----TVEDYVEVARKIGPFADYLELNVSCPNTPGLRALQTDPELAAILLKVV--- 151 (290)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCC-----CHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHCCCHHHHHHHHHHH---
T ss_conf 999998777538885378624669-----999999999999743588999985368876133404298999999998---
Q ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHH---HCCCCEEEEECCCCCCCCCCC----CCCCCCCCCCCCCCCCHH
Q ss_conf 5655312688517865057777488899999876---449829998066555323457----754463221135645424
Q gi|254780434|r 200 EEEKIKTGKFVPIFLKISPDLSEEELDDIAVEVL---SHKVEGIIVSNTTLSRKGVQC----SDNHEQDGGLSGSPLFLK 272 (362)
Q Consensus 200 ~~~~~~~~~~~Pi~vKLsPd~~~~~i~~ia~~a~---~~g~dGiv~~NT~~~~~~~~~----~~~~~~~GGlSG~~i~~~ 272 (362)
T Consensus 152 -----~~~~~~Pv~vKlsp~~~~~--~~~~~a~~~~~a~gv~gi~~~nt~~~~~~~d~~~~~~~~~~~~GGlSG~~i~~~ 224 (290)
T pfam01180 152 -----KEVSKVPVLVKLAPDLTDI--VIIDIADVAAGEDGLTGINATNTTVRGMRIDLKTESPILANGTGGLSGPAIKPI 224 (290)
T ss_pred -----HHCCCCCEEEEECCCCCCH--HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf -----7504787389838987746--899999997183776899965873465555555666312567888576067899
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 689999999740897489996788999999999983999754527877069789999999999999
Q gi|254780434|r 273 STIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMIYEGISLPKRIIQGLSDFL 338 (362)
Q Consensus 273 al~~i~~i~~~~~~~i~IIg~GGI~s~~Da~e~l~aGAs~VQi~Tali~~Gp~~~~~I~~~L~~~l 338 (362)
T Consensus 225 al~~v~~~~~~~~~~ipIig~GGI~~~~da~e~i~aGA~~VQv~Tal~~~Gp~~i~~i~~~L~~~m 290 (290)
T pfam01180 225 ALKVIRELYQRVGPEIPIIGVGGIFTGEDALEKILAGASAVQIGTALIFGGPFIFPKIIDELPELL 290 (290)
T ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 999999999970899749998894999999999983997999858998419179999999999759