RPSBLAST alignment for GI: 254780434 and conserved domain: cd02940
>gnl|CDD|73382 cd02940, DHPD_FMN, Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.. Length = 299
Score = 73.0 bits (179), Expect = 1e-13
Identities = 68/314 (21%), Positives = 125/314 (39%), Gaps = 40/314 (12%)
Query: 45 LNTKVAGISLSNPLGMAAG-YDKNAEVPIELLKLGFGFVEIGTVTP-HPQAGNPRPRVFR 102
L+ GI NP G+A+ + + + G+G T+ N PR+ R
Sbjct: 2 LSVTFCGIKFPNPFGLASAPPTTSYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIAR 61
Query: 103 LTKDRAIINKLGFNN---------AGYHTVFSRLSKIQPTSPI--GINLGANKDSKDFIL 151
L ++GFNN + L K P + I NK+ +
Sbjct: 62 LRTSGR--GQIGFNNIELISEKPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELA 119
Query: 152 DYVSGIRLFFTIASYFTINISSPNTPGLRSLQKKKNLERLLIHVMQTREEEKIKTGKFVP 211
V A +N S P+ R + + L+ R ++ +P
Sbjct: 120 KLVEE-----AGADALELNFSCPHGMPERGMGAAVGQDPELVE-EICRW---VREAVKIP 170
Query: 212 IFLKISPDLSEEELDDIAVEVLSHKVEGIIVSNTTLSRKGVQ--------CSDNHEQDGG 263
+ K++P++++ + +IA +G+ NT S GV + GG
Sbjct: 171 VIAKLTPNITD--IREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGG 228
Query: 264 LSGS---PLFLKSTIALAKIRQRVGPKIAIIGTGGISSTKDALDKIMAGANLIQLYSAMI 320
SG P+ L+ A+++I + P + I G GGI S +DA + ++ GA+++Q+ +A++
Sbjct: 229 YSGPAVKPIALR---AVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVM 285
Query: 321 YEGISLPKRIIQGL 334
+G ++ + GL
Sbjct: 286 NQGFTIVDDMCTGL 299