HHsearch alignment for GI: 254780435 and conserved domain: PRK11397
>PRK11397 dacD D-alanyl-D-alanine carboxypeptidase; Provisional.
Probab=100.00 E-value=0 Score=621.01 Aligned_cols=317 Identities=27% Similarity=0.351 Sum_probs=271.0
Q ss_pred HCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHH------CCC
Q ss_conf 03578754478568999978962977643998307526989999999985135777787660351787720------036
Q gi|254780435|r 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPP 91 (336)
Q Consensus 18 ~~~~~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~------~~~ 91 (336)
T Consensus 28 ~~~p~~P~i~A~sailiD~~TG~vLy~kN~d~~~~pAS~TKlMT~~v~~e~i~~g~l~~d~~v~vs~~a~~~~~~~~~g~ 107 (390)
T PRK11397 28 PFSPQPPAIDAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGS 107 (390)
T ss_pred CCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCC
T ss_conf 78999996553399999999996920129299848779999999999999997399997865996387874148765787
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHH
Q ss_conf 64434510123467776767774235899999764011178999999999987098353441235764622225699999
Q gi|254780435|r 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 (336)
Q Consensus 92 s~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla 171 (336)
T Consensus 108 s~~~l~~Ge~~tv~dLl~~lli~SaNDAa~aLAe~i~Gs~~~Fv~~MN~kAk~lG~~nT~F~np~GL~~~~~~tTA~Dla 187 (390)
T PRK11397 108 SLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYVEKLHLKDTHFETVHGLDAPGQHSSAYDLA 187 (390)
T ss_pred CEEECCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHH
T ss_conf 22421589899999999998874423999999975279999999999999998589874685443467888888999999
Q ss_pred HHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCC-CCCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCCHH
Q ss_conf 9989876312331101230200017447860145656-689711533212411200023456428868999983789866
Q gi|254780435|r 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 (336)
Q Consensus 172 ~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll~-~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~~~ 250 (336)
T Consensus 188 ~la~~~i~~~P~~~~~~~~~~~~~~~~~~~n~N~ll~~~~~~vdGlKTG~T~~AG~~lv~ta~~~g~rlI~Vvlg~~~~~ 267 (390)
T PRK11397 188 VLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAK 267 (390)
T ss_pred HHHHHHHCCCHHHHCCCEEEEEEECCEECCCCCCCHHCCCCCCCEEEECCCHHHHCCEEEEEEECCEEEEEEEECCCCHH
T ss_conf 99999741485563012167887789632775631012466711112046744208176253239839999995899810
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCCCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 78999999999998514532023455455---201455542346-54320211345543233211344445442681120
Q gi|254780435|r 251 TRNKVSASLLSMGFYNKTDRKKINYIIKD---FYQQNLSNEVPN-ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 (336)
Q Consensus 251 ~r~~~~~~Ll~~~f~~f~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 326 (336)
T Consensus 268 ~r~~~~~~Ll~ygf~~f~~~~l~~~~~~v~~~~V~~G~~~~v~l~~~~~~~~~lpk~~~~~i~~~~~~~~~~L~APIkkG 347 (390)
T PRK11397 268 GREEQARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIALGTEQDFWMVLPKAEIPHIKAKYVLDGKELEAPISAH 347 (390)
T ss_pred HHHHHHHHHHHHHHHHCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 58999999999998644799960489343378884486547999977877999887865655899997787536573789
Q ss_pred EECCCEEC
Q ss_conf 00133010
Q gi|254780435|r 327 TLLKNKIT 334 (336)
Q Consensus 327 ~~~~~~i~ 334 (336)
T Consensus 348 ~~VG~l~v 355 (390)
T PRK11397 348 QRVGEIEL 355 (390)
T ss_pred CEEEEEEE
T ss_conf 99599999