HHsearch alignment for GI: 254780435 and conserved domain: TIGR02071
>TIGR02071 PBP_1b penicillin-binding protein 1B; InterPro: IPR011813 Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in Escherichia coli and other Proteobacteria, designated penicillin-binding protein 1B.; GO: 0008233 peptidase activity, 0008955 peptidoglycan glycosyltransferase activity, 0009252 peptidoglycan biosynthetic process, 0046677 response to antibiotic, 0009274 peptidoglycan-based cell wall.
Probab=95.91 E-value=0.055 Score=31.58 Aligned_cols=234 Identities=18% Similarity=0.074 Sum_probs=145.2
Q ss_pred EEEEEECCCCEEEE------------EECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCC
Q ss_conf 68999978962977------------643998307526989999999985135777787660351787720036644345
Q gi|254780435|r 30 YYTLLDTNTGHVIA------------ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97 (336)
Q Consensus 30 ~~i~~d~~tG~iL~------------~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~ 97 (336)
T Consensus 415 Amvv~D~~~GEvrA~vGg~~p~f~GFNRAl~A~R~iGSL~KP~vYLtALs~P~--~Y~LnTw~~d~P~~ik~~~G~~W~P 492 (742)
T TIGR02071 415 AMVVVDRFTGEVRALVGGRDPQFAGFNRALQARRQIGSLVKPAVYLTALSQPD--KYRLNTWIEDQPLSIKLSNGQVWSP 492 (742)
T ss_pred EEEEEECCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHCCCC--CCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 78898368870788875878875601036416377643243689999727897--3114664236644775688872465
Q ss_pred C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEE-ECCCCCCCCCC-CCCHHHHHHH
Q ss_conf 1--012346777676777423589999976401117899999999998709835344-12357646222-2569999999
Q gi|254780435|r 98 K--GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF-MNAHGVVQHGH-YTTARDMAIL 173 (336)
Q Consensus 98 ~--g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f-~n~~Gl~~~~~-~tTa~Dla~l 173 (336)
T Consensus 493 ~N~D~~~~g~V~L~dALa~S~N~pTV~lGm~vG------l~~V~~t~~~LG~~k~~i~~~Psml--LGA~~ltP~evaq~ 564 (742)
T TIGR02071 493 RNYDRRYSGTVMLYDALARSLNIPTVNLGMKVG------LDKVSQTLKKLGINKDEIPPVPSML--LGAISLTPYEVAQL 564 (742)
T ss_pred CCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHCCCCCCCCCCCHHH--HCCCCCCHHHHHHH
T ss_conf 147742256264678987653176788646317------6789999998287712047663355--21136687899989
Q ss_pred HHHHHH---HHH--------------------HHHCCCCEEEC-------CCCCEEEEECCCCCC-CCC--CEEEEEEEC
Q ss_conf 898763---123--------------------31101230200-------017447860145656-689--711533212
Q gi|254780435|r 174 SWRIKT---DFP--------------------QYMHYFQIKGL-------EIKGKKYPNTNWAVG-TFL--GADGMKTGF 220 (336)
Q Consensus 174 ~~~~~~---~~p--------------------~~~~~~~~~~~-------~~~~~~~~N~N~ll~-~~~--gv~G~KTG~ 220 (336)
T Consensus 565 YQtlAsgG~~~pL~avRSVl~~dG~vLy~~~~~~~~~~p~~svAaylt~~AMQqvV~~GTaRsL~~~~~~~l~LAGKTGT 644 (742)
T TIGR02071 565 YQTLASGGERAPLSAVRSVLDEDGKVLYQSLPQAEQAVPSQSVAAYLTLYAMQQVVQRGTARSLGADFPSSLSLAGKTGT 644 (742)
T ss_pred HHHHHCCCCCCCCHHHHHEECCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCC
T ss_conf 97762577554310220101147763301788745457742035776777877542012011001004666565456365
Q ss_pred CHHHHHEEEEEEEECCEEEEEEEECCCCHH-HH---HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 411200023456428868999983789866-78---99999999999851453202345
Q gi|254780435|r 221 TCASGFNIVASAIQGDQSLIAVILGALDRN-TR---NKVSASLLSMGFYNKTDRKKINY 275 (336)
Q Consensus 221 t~~AG~~lv~~a~~~g~~li~Vvlg~~~~~-~r---~~~~~~Ll~~~f~~f~~~~~~~~ 275 (336)
T Consensus 645 tNd~RDsW--F~G~dG~~~~~~W~GRD~N~~TkLtGAsGAl~vy~~yL~~~~P~~L~l~ 701 (742)
T TIGR02071 645 TNDSRDSW--FVGIDGKEVTIVWLGRDDNGPTKLTGASGALQVYKRYLKYQTPEPLLLV 701 (742)
T ss_pred CCCCCCEE--EEEECCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 68885104--7764387899999852789884764531589999999852588742336