HHsearch alignment for GI: 254780435 and conserved domain: TIGR02074
>TIGR02074 PBP_1a_fam penicillin-binding protein, 1A family; InterPro: IPR011816 Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (IPR011813 from INTERPRO). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages.; GO: 0008233 peptidase activity, 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0046677 response to antibiotic.
Probab=96.56 E-value=0.013 Score=35.45 Aligned_cols=136 Identities=16% Similarity=0.133 Sum_probs=89.3
Q ss_pred CCE-EEEEECCCCEEEE-------EEC--------CCCCCCCHHHHHHHHHHHHHHHCCCC-CCCCCCEEEECHHHHHC-
Q ss_conf 856-8999978962977-------643--------99830752698999999998513577-77876603517877200-
Q gi|254780435|r 28 LPY-YTLLDTNTGHVIA-------ENY--------PDHPWNPASLTKLMTAYVVFSFLKEK-KAMLTTPITISKNASEY- 89 (336)
Q Consensus 28 a~~-~i~~d~~tG~iL~-------~kn--------~~~~~~~AS~tKlmTa~~~~~~i~~g-~~~ld~~v~vs~~~~~~- 89 (336)
T Consensus 367 ~q~A~V~~D~~TG~v~A~VGG~dy~~~v~~~fNRAT~a~RQPGStfKPf~VY~~--Ale~G~~~~~~~~~~D~P~~~~~~ 444 (700)
T TIGR02074 367 LQAALVAIDPKTGAVRALVGGRDYGENVSSQFNRATQAKRQPGSTFKPFAVYAA--ALEKGLKYTPASILDDEPITYSGD 444 (700)
T ss_pred CCEEEEEEECCCCEEEEEECCEECCCCCCCCCCHHEECCCCCCCHHHHHHHHHH--HHHHHCCCCCCCEEEECCEEECCC
T ss_conf 250068984589768998746123777644642010002686512657999999--998504347010333033453588
Q ss_pred ---CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEE-----C--CCCCC
Q ss_conf ---3664434510123467776767774235899999764011178999999999987098353441-----2--35764
Q gi|254780435|r 90 ---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM-----N--AHGVV 159 (336)
Q Consensus 90 ---~~s~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~-----n--~~Gl~ 159 (336)
T Consensus 445 ~~~G~~w~P~Ny~g~y~G~vtl~~ALa~S~N~pAv~l~~~vG~-----~~~~~~~~~~~Gi~~~~~~E~T~~~~~s~AL- 518 (700)
T TIGR02074 445 PGNGGGWEPKNYGGKYRGNVTLRQALAQSINIPAVKLLDEVGF-----LDKVVALAKRFGITSPELPEKTLDPVLSLAL- 518 (700)
T ss_pred CCCCCCCCEECCCCCEEECCCHHHHHHHCCCHHHHHHHHHHCC-----HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE-
T ss_conf 8988950300068814613329999751223899999987078-----2799999997088787666658887565010-
Q ss_pred CCCCC----CCHHHHHH
Q ss_conf 62222----56999999
Q gi|254780435|r 160 QHGHY----TTARDMAI 172 (336)
Q Consensus 160 ~~~~~----tTa~Dla~ 172 (336)
T Consensus 519 -G~~e~~~Gv~pl~~A~ 534 (700)
T TIGR02074 519 -GTVESRKGVSPLEMAS 534 (700)
T ss_pred -CCCCCCCCCCHHHHHH
T ss_conf -6654344756899998