Query gi|254780435|ref|YP_003064848.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 336
No_of_seqs 171 out of 2246
Neff 6.8
Searched_HMMs 39220
Date Sun May 29 16:21:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780435.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11397 dacD D-alanyl-D-alani 100.0 0 0 621.0 28.4 317 18-334 28-355 (390)
2 PRK10001 D-alanyl-D-alanine ca 100.0 0 0 611.0 25.6 317 16-334 27-356 (400)
3 PRK10793 D-alanyl-D-alanine ca 100.0 0 0 609.2 26.1 314 21-334 39-363 (403)
4 COG1686 DacC D-alanyl-D-alanin 100.0 0 0 592.8 26.0 257 22-278 32-292 (389)
5 PRK11669 pbpG D-alanyl-D-alani 100.0 0 0 514.9 24.6 239 22-266 34-280 (308)
6 pfam00768 Peptidase_S11 D-alan 100.0 0 0 508.3 22.7 230 19-248 3-241 (241)
7 COG2367 PenP Beta-lactamase cl 99.7 3.2E-15 8.2E-20 112.2 13.2 212 30-250 66-301 (329)
8 PRK11113 D-alanyl-D-alanine ca 99.5 2.4E-12 6.2E-17 94.7 15.5 143 100-245 291-445 (477)
9 PRK10662 beta-lactamase/D-alan 99.1 6.6E-09 1.7E-13 73.7 13.9 138 37-180 57-270 (377)
10 PRK11289 ampC beta-lactamase; 99.0 7.2E-08 1.8E-12 67.4 17.8 125 46-179 80-265 (387)
11 pfam00144 Beta-lactamase Beta- 98.9 1.9E-08 4.9E-13 71.0 10.4 143 28-179 14-235 (327)
12 pfam02113 Peptidase_S13 D-Ala- 98.8 2.4E-07 6.2E-12 64.2 13.6 147 96-245 223-382 (383)
13 pfam00905 Transpeptidase Penic 98.7 3E-06 7.7E-11 57.5 16.2 136 30-179 2-175 (296)
14 TIGR03423 pbp2_mrdA penicillin 98.7 1.4E-05 3.6E-10 53.5 19.5 109 28-150 248-392 (592)
15 PRK10795 penicillin-binding pr 98.6 2.2E-05 5.7E-10 52.2 18.1 224 29-266 271-614 (619)
16 PRK13128 D-aminopeptidase; Rev 98.3 3E-05 7.6E-10 51.5 13.3 232 26-265 20-331 (518)
17 COG2027 DacB D-alanyl-D-alanin 98.3 3.9E-05 9.9E-10 50.8 13.6 143 100-246 291-443 (470)
18 PRK03642 hypothetical protein; 98.1 1.6E-05 4.2E-10 53.1 7.0 53 29-81 56-129 (432)
19 COG1680 AmpC Beta-lactamase cl 97.8 5.6E-05 1.4E-09 49.8 6.5 134 46-181 84-288 (390)
20 PRK09506 mrcB penicillin-bindi 97.8 0.0025 6.4E-08 39.7 16.8 228 30-273 471-752 (839)
21 TIGR00666 PBP4 D-alanyl-D-alan 97.8 0.00036 9.1E-09 44.9 9.6 167 73-244 242-424 (427)
22 COG0768 FtsI Cell division pro 97.0 0.012 2.9E-07 35.7 9.7 234 25-268 264-593 (599)
23 COG2027 DacB D-alanyl-D-alanin 96.7 0.0087 2.2E-07 36.5 7.0 44 27-70 36-79 (470)
24 TIGR02074 PBP_1a_fam penicilli 96.6 0.013 3.3E-07 35.4 7.2 136 28-172 367-534 (700)
25 COG0744 MrcB Membrane carboxyp 96.2 0.095 2.4E-06 30.1 11.3 141 30-186 329-484 (661)
26 TIGR00666 PBP4 D-alanyl-D-alan 96.0 0.0057 1.4E-07 37.6 2.9 43 38-81 1-43 (427)
27 TIGR02071 PBP_1b penicillin-bi 95.9 0.055 1.4E-06 31.6 7.7 234 30-275 415-701 (742)
28 PRK11636 mrcA peptidoglycan sy 95.3 0.22 5.7E-06 27.9 10.8 131 30-174 428-577 (850)
29 COG2602 Beta-lactamase class D 94.6 0.35 9E-06 26.7 15.3 204 30-260 31-246 (254)
30 TIGR02214 spoVD_pbp stage V sp 91.7 0.98 2.5E-05 24.0 8.5 220 28-272 248-587 (660)
31 PRK11240 penicillin-binding pr 91.1 1.1 2.9E-05 23.6 12.9 137 28-178 300-456 (770)
32 COG2066 GlsA Glutaminase [Amin 66.6 8.7 0.00022 18.2 3.8 39 31-69 42-80 (309)
33 PRK13697 cytochrome c6; Provis 66.1 1.4 3.6E-05 23.0 -0.4 38 1-46 1-38 (111)
34 PRK08655 prephenate dehydrogen 61.4 11 0.00029 17.5 3.5 29 118-146 243-272 (441)
35 PRK00971 glutaminase; Provisio 57.6 14 0.00035 17.0 4.2 36 33-69 44-79 (308)
36 pfam10566 Glyco_hydro_97 Glyco 55.5 15 0.00038 16.7 3.6 48 1-48 1-53 (643)
37 pfam04960 Glutaminase Glutamin 51.0 18 0.00045 16.3 4.5 39 31-69 19-57 (286)
38 pfam06089 Asparaginase_II L-as 46.8 21 0.00053 15.9 5.5 126 25-155 12-153 (325)
39 TIGR02079 THD1 threonine dehyd 45.4 16 0.0004 16.6 2.1 74 77-153 16-95 (415)
40 PRK09934 putative fimbrial pro 45.3 18 0.00046 16.2 2.5 21 1-21 1-21 (171)
41 PRK10780 periplasmic chaperone 41.2 20 0.0005 16.0 2.1 19 1-19 1-19 (161)
42 PRK12357 glutaminase; Reviewed 37.9 28 0.00073 15.0 4.3 40 31-70 49-88 (326)
43 TIGR01882 peptidase-T peptidas 37.4 29 0.00074 15.0 2.5 110 131-266 32-163 (413)
44 PRK00031 lolA outer-membrane l 37.0 26 0.00066 15.3 2.2 21 1-21 1-21 (201)
45 PRK03629 tolB translocation pr 36.4 30 0.00077 14.9 3.4 17 1-17 1-17 (430)
46 KOG4038 consensus 36.3 25 0.00062 15.4 2.0 22 31-52 20-41 (150)
47 TIGR02318 phosphono_phnM phosp 36.0 27 0.00068 15.2 2.1 33 139-173 268-303 (391)
48 TIGR02928 TIGR02928 orc1/cdc6 35.8 13 0.00034 17.0 0.6 62 200-263 41-103 (383)
49 PRK13861 type IV secretion sys 35.8 24 0.00062 15.5 1.9 19 1-19 2-20 (293)
50 TIGR00853 pts-lac PTS system, 34.5 32 0.00082 14.7 3.1 73 128-207 56-128 (142)
51 PRK12356 glutaminase; Reviewed 32.9 34 0.00087 14.6 4.4 37 33-70 48-84 (319)
52 pfam03971 IDH Monomeric isocit 31.6 30 0.00076 14.9 1.8 26 129-155 401-426 (735)
53 pfam09403 FadA Adhesion protei 31.4 30 0.00076 14.9 1.8 16 1-16 1-16 (126)
54 pfam06892 Phage_CP76 Phage reg 28.7 40 0.001 14.1 2.3 56 117-183 11-66 (163)
55 PRK03757 hypothetical protein; 27.7 42 0.0011 14.0 2.5 17 1-17 1-17 (191)
56 pfam05351 GMP_PDE_delta GMP-PD 26.2 44 0.0011 13.9 1.9 21 29-49 12-32 (156)
57 TIGR01162 purE phosphoribosyla 26.1 45 0.0011 13.8 2.5 23 240-262 1-23 (159)
58 TIGR02787 codY_Gpos GTP-sensin 25.9 17 0.00044 16.4 -0.3 27 130-157 22-48 (255)
59 pfam01011 PQQ PQQ enzyme repea 25.4 46 0.0012 13.8 2.2 24 30-53 11-34 (38)
60 PRK10449 heat-inducible protei 24.9 47 0.0012 13.7 3.7 41 1-42 1-45 (140)
61 COG4800 Predicted transcriptio 24.5 48 0.0012 13.6 4.3 40 119-159 3-42 (170)
62 PRK10869 recombination and rep 24.4 48 0.0012 13.6 4.2 16 49-64 110-125 (553)
63 PRK10954 periplasmic protein d 23.8 50 0.0013 13.6 2.5 33 1-36 1-33 (207)
64 COG0337 AroB 3-dehydroquinate 22.7 52 0.0013 13.4 2.4 127 134-264 48-189 (360)
65 TIGR01357 aroB 3-dehydroquinat 22.5 24 0.00062 15.5 -0.0 128 133-264 39-181 (361)
66 PRK06763 F0F1 ATP synthase sub 20.8 57 0.0015 13.2 2.1 31 1-31 3-33 (213)
67 cd05565 PTS_IIB_lactose PTS_II 20.1 19 0.0005 16.0 -0.9 60 128-189 10-69 (99)
No 1
>PRK11397 dacD D-alanyl-D-alanine carboxypeptidase; Provisional
Probab=100.00 E-value=0 Score=621.01 Aligned_cols=317 Identities=27% Similarity=0.351 Sum_probs=271.0
Q ss_pred HCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHH------CCC
Q ss_conf 03578754478568999978962977643998307526989999999985135777787660351787720------036
Q gi|254780435|r 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPP 91 (336)
Q Consensus 18 ~~~~~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~------~~~ 91 (336)
+..+.+|.+.|++||+||++||+|||+||+|+++||||+|||||+|+++|++++|+++||++|+||++++. .++
T Consensus 28 ~~~p~~P~i~A~sailiD~~TG~vLy~kN~d~~~~pAS~TKlMT~~v~~e~i~~g~l~~d~~v~vs~~a~~~~~~~~~g~ 107 (390)
T PRK11397 28 PFSPQPPAIDAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGS 107 (390)
T ss_pred CCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHCCCCCCCCC
T ss_conf 78999996553399999999996920129299848779999999999999997399997865996387874148765787
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHH
Q ss_conf 64434510123467776767774235899999764011178999999999987098353441235764622225699999
Q gi|254780435|r 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171 (336)
Q Consensus 92 s~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla 171 (336)
|.++|++|+++|++|||+||||.||||||++|||+++||+++||++||++|++|||+||||.||||||+++|||||||||
T Consensus 108 s~~~l~~Ge~~tv~dLl~~lli~SaNDAa~aLAe~i~Gs~~~Fv~~MN~kAk~lG~~nT~F~np~GL~~~~~~tTA~Dla 187 (390)
T PRK11397 108 SLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYVEKLHLKDTHFETVHGLDAPGQHSSAYDLA 187 (390)
T ss_pred CEEECCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHH
T ss_conf 22421589899999999998874423999999975279999999999999998589874685443467888888999999
Q ss_pred HHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCC-CCCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCCHH
Q ss_conf 9989876312331101230200017447860145656-689711533212411200023456428868999983789866
Q gi|254780435|r 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250 (336)
Q Consensus 172 ~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll~-~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~~~ 250 (336)
+|+++++++||+|+++++++++++++.++.|+|.||+ .+.++||+|||||++||||||++++|||||+|+||||+++.+
T Consensus 188 ~la~~~i~~~P~~~~~~~~~~~~~~~~~~~n~N~ll~~~~~~vdGlKTG~T~~AG~~lv~ta~~~g~rlI~Vvlg~~~~~ 267 (390)
T PRK11397 188 VLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAK 267 (390)
T ss_pred HHHHHHHCCCHHHHCCCEEEEEEECCEECCCCCCCHHCCCCCCCEEEECCCHHHHCCEEEEEEECCEEEEEEEECCCCHH
T ss_conf 99999741485563012167887789632775631012466711112046744208176253239839999995899810
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCCCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 78999999999998514532023455455---201455542346-54320211345543233211344445442681120
Q gi|254780435|r 251 TRNKVSASLLSMGFYNKTDRKKINYIIKD---FYQQNLSNEVPN-ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326 (336)
Q Consensus 251 ~r~~~~~~Ll~~~f~~f~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 326 (336)
.|+.++++|+||||++|+...++.+.... ..+.+....++. ...++..............+.........+|++++
T Consensus 268 ~r~~~~~~Ll~ygf~~f~~~~l~~~~~~v~~~~V~~G~~~~v~l~~~~~~~~~lpk~~~~~i~~~~~~~~~~L~APIkkG 347 (390)
T PRK11397 268 GREEQARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIALGTEQDFWMVLPKAEIPHIKAKYVLDGKELEAPISAH 347 (390)
T ss_pred HHHHHHHHHHHHHHHHCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 58999999999998644799960489343378884486547999977877999887865655899997787536573789
Q ss_pred EECCCEEC
Q ss_conf 00133010
Q gi|254780435|r 327 TLLKNKIT 334 (336)
Q Consensus 327 ~~~~~~i~ 334 (336)
+.+|....
T Consensus 348 ~~VG~l~v 355 (390)
T PRK11397 348 QRVGEIEL 355 (390)
T ss_pred CEEEEEEE
T ss_conf 99599999
No 2
>PRK10001 D-alanyl-D-alanine carboxypeptidase fraction C; Provisional
Probab=100.00 E-value=0 Score=611.01 Aligned_cols=317 Identities=31% Similarity=0.373 Sum_probs=269.9
Q ss_pred HHHCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHC------
Q ss_conf 50035787544785689999789629776439983075269899999999851357777876603517877200------
Q gi|254780435|r 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY------ 89 (336)
Q Consensus 16 ~~~~~~~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~------ 89 (336)
+....+.+|.+.|++||+||++||+|||+||+|+++||||+|||||+|+++|++++|+++||++|+||++++..
T Consensus 27 ~~~~~~~~P~i~A~sail~D~~TG~VLy~Kn~d~~~~pAS~TKlMTa~lv~eai~~g~i~ld~~v~vs~~a~~~~~~~~~ 106 (400)
T PRK10001 27 AAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALR 106 (400)
T ss_pred HCCCCCCCCCCCCEEEEEEECCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCCCCCC
T ss_conf 14058987974531899999999959453093998487799999999999999865999878647724899852476556
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHH
Q ss_conf 36644345101234677767677742358999997640111789999999999870983534412357646222256999
Q gi|254780435|r 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169 (336)
Q Consensus 90 ~~s~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~D 169 (336)
++|.++|++|+++||+|||+++||.||||||++||||++||+++||++||++|++|||+||||.|||||++++|||||||
T Consensus 107 g~S~~~l~~g~~~tv~dLL~~lli~SaNDAA~aLAe~i~Gs~~~Fv~~MN~kA~~LG~~nT~F~np~GL~~~~~~sTA~D 186 (400)
T PRK10001 107 GSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARD 186 (400)
T ss_pred CCCEEEECCCCEEEHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHH
T ss_conf 87424423798989999999987744259999999723556899999999999982898754356643667544455999
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCCCC-CCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCC
Q ss_conf 99998987631233110123020001744786014565668-97115332124112000234564288689999837898
Q gi|254780435|r 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 (336)
Q Consensus 170 la~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll~~~-~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~ 248 (336)
||+|+++++++||+++.+++.+++++++..+.|+|+||+.. .++||+|||||++||||||++++|||||+|+||||+++
T Consensus 187 la~la~~l~~~~p~~~~~~~~~~~t~~~~~~~N~N~lL~~~~~~vdGlKTG~t~~AG~~lv~ta~r~g~rlI~VVlga~s 266 (400)
T PRK10001 187 MALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKT 266 (400)
T ss_pred HHHHHHHHHCCCCHHEEEEEEEEEEECCEEEECCCCCCCCCCCCCEEEEECCCHHCCCCHHHEEECCCCEEEEEEECCCC
T ss_conf 99999988606834137534789987888972214311267778503761334323771432443389589999948999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCCCCCCC-CCCC--EEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6678999999999998514532023455455---201455542346-5432--021134554323321134444544268
Q gi|254780435|r 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKD---FYQQNLSNEVPN-ISEE--VCTTQKEIINYNTQMKEAKDKESHFID 322 (336)
Q Consensus 249 ~~~r~~~~~~Ll~~~f~~f~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (336)
...|+.++++||||||++|+...++.+.... .++.+....++. .... +..+..+......... .......+|
T Consensus 267 ~~~R~~dt~~Ll~ygf~~f~~~~~~~~~~~v~~~~V~~G~~~~v~l~~~~~~~~~vp~~~~~~~~~~~~--~~~p~l~AP 344 (400)
T PRK10001 267 DRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGEAGSVTIPRGQLKNLKASYT--LNEPQLTAP 344 (400)
T ss_pred CCHHHHHHHHHHHHHHHHCEEEEEECCCCEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCEEEEEE--ECCCCEEEC
T ss_conf 207999999999999861688875048976675112367677799984686799998897566069999--858735437
Q ss_pred CEEEEECCCEEC
Q ss_conf 112000133010
Q gi|254780435|r 323 FEKITLLKNKIT 334 (336)
Q Consensus 323 ~~ki~~~~~~i~ 334 (336)
++|++.+|+...
T Consensus 345 IkkG~~VG~l~v 356 (400)
T PRK10001 345 LKKGQVVGTIDF 356 (400)
T ss_pred CCCCCEEEEEEE
T ss_conf 267999799999
No 3
>PRK10793 D-alanyl-D-alanine carboxypeptidase fraction A; Provisional
Probab=100.00 E-value=0 Score=609.22 Aligned_cols=314 Identities=27% Similarity=0.338 Sum_probs=268.3
Q ss_pred CCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHC------CCCCC
Q ss_conf 787544785689999789629776439983075269899999999851357777876603517877200------36644
Q gi|254780435|r 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY------PPSNS 94 (336)
Q Consensus 21 ~~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~------~~s~~ 94 (336)
+.+|.+.|++||+||++||+|||+||+|+++||||+|||||+|+++|++++|+++||++|+||++++.. ++|.+
T Consensus 39 p~~P~i~A~sailiD~~TG~VLy~kNad~~~~pAS~TKlMT~~lv~eai~~g~l~~~d~v~vs~~a~~~~~~~~~g~s~~ 118 (403)
T PRK10793 39 PGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLM 118 (403)
T ss_pred CCCCCCCCEEEEEEECCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCCCCCCCCCEE
T ss_conf 99897554199999999994913109499958779999999999999997599998885996589985148766787425
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 34510123467776767774235899999764011178999999999987098353441235764622225699999998
Q gi|254780435|r 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 (336)
Q Consensus 95 ~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~ 174 (336)
+|++|+++||+|||+|+||.||||||+|||||++||+++||++||++|+||||+||||+||||||+++|||||||||+|+
T Consensus 119 ~l~~G~~~tv~dLl~gl~i~SaNDAa~aLAe~i~Gs~~~Fv~~MN~kA~eLG~~nT~F~np~GL~~~~~~tTA~Dla~la 198 (403)
T PRK10793 119 FLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIG 198 (403)
T ss_pred EECCCCEEEHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 41589899999999975652435999999975069899999999999998589874544787776767655889999999
Q ss_pred HHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCCC-CCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCCHHHHH
Q ss_conf 98763123311012302000174478601456566-89711533212411200023456428868999983789866789
Q gi|254780435|r 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 (336)
Q Consensus 175 ~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll~~-~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~~~~r~ 253 (336)
++++++||+++.+++.+.+++++..+.|+|+||+. +.++||+|||||++||||||++++|||+|+|+||||+++.+.|+
T Consensus 199 ~~l~~~~p~~~~~~~~~~~~~~~~~~~n~N~lL~~~~~~vdGlKTG~T~~AG~~lv~sa~r~g~rlI~Vvlg~~s~~~R~ 278 (403)
T PRK10793 199 QALIRDVPNEYAIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGRE 278 (403)
T ss_pred HHHHHHCCHHEEEEEEEEEEECCEEEECCCHHHHCCCCCCCCEECCCCCCCCEEEEEEEEECCCEEEEEEECCCCCHHHH
T ss_conf 99987484124787778998789886321266444677853100244455770678999858969999992899810789
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCC---CCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 9999999999851453202345545---5201455542346-54320211345543233211344445442681120001
Q gi|254780435|r 254 KVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPN-ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329 (336)
Q Consensus 254 ~~~~~Ll~~~f~~f~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~ 329 (336)
.|+++||||||++|+...++.++.. ..++.+....+.. ...++....++........+.........+|+++++.+
T Consensus 279 ~d~~~Ll~ygf~~f~~~~~~~~g~~v~~~~V~~G~~~~V~L~~~~dv~~~lp~~~~~~i~~~~~~~~~~L~APVkkGq~V 358 (403)
T PRK10793 279 TESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNTSELHAPLQKNQVV 358 (403)
T ss_pred HHHHHHHHHHHHHCEEEEECCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCEEEEEEECCCCEECCCCCCCEE
T ss_conf 99999999998733898622689787688897376548999846876999767864660599996476330465899994
Q ss_pred CCEEC
Q ss_conf 33010
Q gi|254780435|r 330 KNKIT 334 (336)
Q Consensus 330 ~~~i~ 334 (336)
|+...
T Consensus 359 G~l~v 363 (403)
T PRK10793 359 GTINF 363 (403)
T ss_pred EEEEE
T ss_conf 99999
No 4
>COG1686 DacC D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=592.84 Aligned_cols=257 Identities=39% Similarity=0.518 Sum_probs=248.4
Q ss_pred CCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCC-CCCCCCCCCH
Q ss_conf 875447856899997896297764399830752698999999998513577778766035178772003-6644345101
Q gi|254780435|r 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-PSNSTFKKGS 100 (336)
Q Consensus 22 ~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~-~s~~~l~~g~ 100 (336)
.+|.+.+.+|||||++||+|||+||+|+++||||+|||||+||++|+++.|+++||+.|++|++++..+ +|.++|++|+
T Consensus 32 ~~~~~~a~~aiviD~~sGkVLy~kn~d~~~~pASlTKlMTayv~~ea~~~gki~~~~~v~is~~a~~~~~~S~~~l~~G~ 111 (389)
T COG1686 32 AAPEIAAKAAIVIDADSGKVLYSKNADARRPPASLTKLMTAYVVLEALKAGKIKLDDKVTISENAWAKGGGSKMFLKPGE 111 (389)
T ss_pred CCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCHHHHHCCCCCCCEECCCC
T ss_conf 67676664389998899847213288988785099999999999987642688845533356756631787651134698
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23467776767774235899999764011178999999999987098353441235764622225699999998987631
Q gi|254780435|r 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 (336)
Q Consensus 101 ~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~~~~~~~ 180 (336)
++|++|||++|+|.|+||||++|||+++||+++||++||++|++|||+||||.||||||+++|+||||||++|+++++++
T Consensus 112 ~~tv~dLl~gllv~SaNDAA~aLAe~~~Gs~~~Fv~~MN~kA~~LGm~nT~F~npsGL~~~~~~tTArDla~l~~~l~~~ 191 (389)
T COG1686 112 TVTVRDLLKGLLVQSANDAAVALAEHLAGSEDAFVAKMNAKAKELGMKNTHFVNPSGLDNPGQVTTARDLALLARALIRD 191 (389)
T ss_pred EEEHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 87899999998874454999999987179899999999999998589888761887889888746698999999999884
Q ss_pred HHHHHCCCCEEECCC--CCEEEEECCCCCCC-CCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCCHHHHHHHHH
Q ss_conf 233110123020001--74478601456566-897115332124112000234564288689999837898667899999
Q gi|254780435|r 181 FPQYMHYFQIKGLEI--KGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257 (336)
Q Consensus 181 ~p~~~~~~~~~~~~~--~~~~~~N~N~ll~~-~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~~~~r~~~~~ 257 (336)
||+++++++++++++ ++..++|+|.+++. |+|+||+|||||++||||||+++.+||||+|+||||+++...|++++.
T Consensus 192 ~P~~~~~~s~~~~~~~~~~~~~~n~N~l~~~~~~g~dG~KTGyT~~AG~nlv~sa~~~grrli~Vvlg~~~~~~R~~~~~ 271 (389)
T COG1686 192 YPEIYEISSTKSFTFPANKITQRNRNLLLWRKYPGVDGLKTGYTDEAGYNLVGSAKRNGRRLIAVVLGADSAKTRFEDAA 271 (389)
T ss_pred CCHHHHHCCEEEEEEECCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCHHHHHH
T ss_conf 83653114124788715840112213021057889763024324566731798863389289999818997300699999
Q ss_pred HHHHHHHHHCCCCCCCCCCCC
Q ss_conf 999999851453202345545
Q gi|254780435|r 258 SLLSMGFYNKTDRKKINYIIK 278 (336)
Q Consensus 258 ~Ll~~~f~~f~~~~~~~~~~~ 278 (336)
+|++|+|++|....+..+...
T Consensus 272 ~Ll~~~f~~~~~~~~~~~~~~ 292 (389)
T COG1686 272 KLLDWGFTNFETRKILKKGKA 292 (389)
T ss_pred HHHHHHHHCCCCCCCCCCCCC
T ss_conf 999987410333444445431
No 5
>PRK11669 pbpG D-alanyl-D-alanine endopeptidase; Provisional
Probab=100.00 E-value=0 Score=514.85 Aligned_cols=239 Identities=25% Similarity=0.281 Sum_probs=217.2
Q ss_pred CCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC-HHHHHCCCCCCCCCCCH
Q ss_conf 87544785689999789629776439983075269899999999851357777876603517-87720036644345101
Q gi|254780435|r 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGS 100 (336)
Q Consensus 22 ~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs-~~~~~~~~s~~~l~~g~ 100 (336)
.+|.+.+++|||||++||+|||+||+|+++||||+|||||+|+++|+ +++||++++|+ .+....+++..+++.|+
T Consensus 34 ~~P~i~A~sail~D~~TG~VLy~kn~d~~~~pAS~TKlMTalv~le~----~~~ld~~v~v~~~~~~~~~~~~s~l~~G~ 109 (308)
T PRK11669 34 SQQELASGSAMVVDLNTNKVIYSSNPDLVVPIASITKLMTAMVVLDA----KLPLDEKLKVDISQTPEMKGVYSRVRLNS 109 (308)
T ss_pred CCCCCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHC----CCCCCCEEEEEHHHHHHCCCCCCCCCCCC
T ss_conf 94964540899999999969001582998487899999999999817----89988769976776200068744334798
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23467776767774235899999764011178999999999987098353441235764622225699999998987631
Q gi|254780435|r 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180 (336)
Q Consensus 101 ~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~~~~~~~ 180 (336)
++|++|||+++|+.|+||||++|||+++||+++||++||++|++|||+||||+||||| +++|+||||||++|+++ .++
T Consensus 110 ~~tv~dLl~~~li~S~NdAA~aLAe~i~Gs~~~Fv~~MN~kA~eLGm~~T~F~np~GL-~~~n~sTA~DLA~L~~~-a~~ 187 (308)
T PRK11669 110 EISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMKNTRYVEPTGL-SVHNVSTARDLTKLLIA-SKQ 187 (308)
T ss_pred EEEHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCC-CCCCEECHHHHHHHHHH-HHH
T ss_conf 8889999999987465299999999707679999999999999829998888689998-98880389999999999-985
Q ss_pred HHHHHCCCCEEECC--CCC----EEEEECCCCCCCCC-CEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCCHHHHH
Q ss_conf 23311012302000--174----47860145656689-711533212411200023456428868999983789866789
Q gi|254780435|r 181 FPQYMHYFQIKGLE--IKG----KKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253 (336)
Q Consensus 181 ~p~~~~~~~~~~~~--~~~----~~~~N~N~ll~~~~-gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~~~~r~ 253 (336)
||+|.++..++++. +.+ ..++|+|+||+.++ +++|+|||||++||||||++++|||||+|+||||++++..||
T Consensus 188 ~P~~~~~~~t~~~~~~~~~~~~~~~~~NtN~LL~~~~~~i~g~KTG~T~~AG~clV~tA~r~grrlI~VVL~a~gk~~~f 267 (308)
T PRK11669 188 YPLIGQLSTTREKTVTFRKPNYTLPFRNTNHLVYKDNWNIQLTKTGFTNAAGHCLVMRTVINNRPVALVVLDAFGKYTHF 267 (308)
T ss_pred CCHHHEEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCCH
T ss_conf 96122043466799983677515312334602135788957076466643577668999999979999992899986638
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999851
Q gi|254780435|r 254 KVSASLLSMGFYN 266 (336)
Q Consensus 254 ~~~~~Ll~~~f~~ 266 (336)
.|+.+|++|--..
T Consensus 268 ~da~rl~~w~~~~ 280 (308)
T PRK11669 268 ADASRLRTWIETG 280 (308)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999868
No 6
>pfam00768 Peptidase_S11 D-alanyl-D-alanine carboxypeptidase.
Probab=100.00 E-value=0 Score=508.25 Aligned_cols=230 Identities=38% Similarity=0.501 Sum_probs=217.2
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHH----CCCCCC
Q ss_conf 3578754478568999978962977643998307526989999999985135777787660351787720----036644
Q gi|254780435|r 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----YPPSNS 94 (336)
Q Consensus 19 ~~~~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~----~~~s~~ 94 (336)
...++|.+.|++|+|+|++||+|||+||+|+++||||+|||||+|+++|++++|+++|+++|++++.+.. .++|++
T Consensus 3 ~~~~~P~i~A~saiv~D~~tg~iL~~kn~~~~~~pAS~TKlMTa~v~le~~~~~~~~~~~~v~is~~~~~~~~~~~~s~~ 82 (241)
T pfam00768 3 TTVSAPEIAAKSAILVDYNTGKVLYEKNADQVRPIASITKLMTAYVVLEALKAGKLKEDDPVTISEYAYALGNFRGSSNM 82 (241)
T ss_pred CCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHCCCCCCCEE
T ss_conf 77899856512999999999979000690998177899999999999997562898854442101889986378887346
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 34510123467776767774235899999764011178999999999987098353441235764622225699999998
Q gi|254780435|r 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 (336)
Q Consensus 95 ~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~ 174 (336)
+|++|+++|++|||++||++|+||||++|||+++||+++||++||++|++|||+||||.|||||++++|||||+||++|+
T Consensus 83 ~l~~G~~~tv~dLl~~lll~S~NdAA~aLA~~v~Gs~~~Fv~~MN~~A~~LGm~~T~F~np~GL~~~~~~sTA~Dla~l~ 162 (241)
T pfam00768 83 FLKPGDKVTVRDLLRGLLVSSGNDAAVALAEKIAGSEKAFVKMMNAKAKQLGLKNTRFVNPTGLDNHGQYSSARDLAILA 162 (241)
T ss_pred EECCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEECHHHHHHHH
T ss_conf 53489998899999999875645999999998458299999999999998199998666687777888666799999999
Q ss_pred HHHHHHHHHHHCCCCEEECCCCC----EEEEECCCCCCCCC-CEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCC
Q ss_conf 98763123311012302000174----47860145656689-7115332124112000234564288689999837898
Q gi|254780435|r 175 WRIKTDFPQYMHYFQIKGLEIKG----KKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 (336)
Q Consensus 175 ~~~~~~~p~~~~~~~~~~~~~~~----~~~~N~N~ll~~~~-gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~ 248 (336)
+++++++|++..+++...+.+.+ ++|.|+|++|+.+. +++|+|||||++||+|||++++|||||+|+||||++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~NtN~ll~~~~~~v~G~KTG~T~~AG~clv~~a~~~g~~~I~VvLgs~s 241 (241)
T pfam00768 163 RALIKDLPEVLSITKEKSATFNTPIYKINWMNTNGLLYRKGGNVDGLKTGYTKEAGYCLVATATEGGMRVISVVLNADT 241 (241)
T ss_pred HHHHHHCHHHEEEEEEEEEEECCCCCEEEEECCCCHHHCCCCCEEEEEEEEECCCCCEEEEEEEECCEEEEEEEECCCC
T ss_conf 9998749584088877899974787358997379510057985799995253166645999999999899999949999
No 7
>COG2367 PenP Beta-lactamase class A [Defense mechanisms]
Probab=99.66 E-value=3.2e-15 Score=112.21 Aligned_cols=212 Identities=22% Similarity=0.184 Sum_probs=141.2
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCC-CC-CCCHHHHHHHH
Q ss_conf 68999978962977643998307526989999999985135777787660351787720036644-34-51012346777
Q gi|254780435|r 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS-TF-KKGSTMTLDNA 107 (336)
Q Consensus 30 ~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~-~l-~~g~~~tv~dl 107 (336)
+..+.|.++| .+++.|+++++|-||+.|+..+..++++++.|++.||+.+++++ .....+|.+ .+ ..|..++++|+
T Consensus 66 ~~~v~d~~t~-~~~~~n~~~~fp~aSt~K~~v~~a~l~~v~~G~~~l~e~~ti~~-d~~~~~s~~~~~~~~g~~~t~~el 143 (329)
T COG2367 66 GVYVLDVDTG-ELIAINGDERFPAASTIKLPVLAALLEQVDAGRIGLDERLTITK-DDRVGGSGVLQYLVGGGGSTLREL 143 (329)
T ss_pred EEEEEECCCC-CEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH-HHHCCCCCHHEEECCCCCEEHHHH
T ss_conf 7999966887-31311577521257899999999999971457557554201043-332257611113157883579999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECC--------CCCCCCCC----CCCHHHHHHHHH
Q ss_conf 676777423589999976401117899999999998709835344123--------57646222----256999999989
Q gi|254780435|r 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA--------HGVVQHGH----YTTARDMAILSW 175 (336)
Q Consensus 108 l~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~--------~Gl~~~~~----~tTa~Dla~l~~ 175 (336)
+..|++.|+|-|+..|.+.+||- +..|++.+++||.+|+-.++ .|-++..+ .+++.+...|.+
T Consensus 144 ~~~mi~~SDNtAtnmLi~rlg~~-----~~v~~~l~~~Gl~~t~~~~~~~~~ln~~~~~~d~~~~~~~~t~a~~~~~L~q 218 (329)
T COG2367 144 LTKMITASDNTATNMLIERLGGP-----KALNEWLRSIGLPNTRLRRPYMPDLNRFNGPYDPRDSGKTTTPADDAATLLQ 218 (329)
T ss_pred HHHHHHHCCHHHHHHHHHHHCCH-----HHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 96522214028889999993581-----9999999981883223100026620026677663335565687899999999
Q ss_pred HHHHHHHHHHCCC-CE--EECCCCCEEEEECC---CCCC---CCCCEEEEEEECCHHHHHEEEEEEEECCE-EEEEEEEC
Q ss_conf 8763123311012-30--20001744786014---5656---68971153321241120002345642886-89999837
Q gi|254780435|r 176 RIKTDFPQYMHYF-QI--KGLEIKGKKYPNTN---WAVG---TFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILG 245 (336)
Q Consensus 176 ~~~~~~p~~~~~~-~~--~~~~~~~~~~~N~N---~ll~---~~~gv~G~KTG~t~~AG~~lv~~a~~~g~-~li~Vvlg 245 (336)
.++.....--... .. .-..| ..+.|.. .+++ ......+-|||.......+=++.....+. ..++.+.+
T Consensus 219 ~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~r~~~~~~~~ia~K~G~~l~~~~~D~~~~~~~~~~~~v~~~~~ 296 (329)
T COG2367 219 LILGAVLSPSDRATGLSGYLAEW--ALLANTIGRDWLLRAGLPFDWAIAHKTGTGLGGTANDVGIIWAPVPKPIVAAVIG 296 (329)
T ss_pred HHHCCCCCCCCCCCCCHHHHHHH--HHHHHCCCCCCCHHCCCCCCHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEEEE
T ss_conf 87335578542234405888878--9986266864320103874422304656346788776378856988448999973
Q ss_pred CCCHH
Q ss_conf 89866
Q gi|254780435|r 246 ALDRN 250 (336)
Q Consensus 246 ~~~~~ 250 (336)
.....
T Consensus 297 ~~~~~ 301 (329)
T COG2367 297 ERPGK 301 (329)
T ss_pred CCCCC
T ss_conf 47676
No 8
>PRK11113 D-alanyl-D-alanine carboxypeptidase/endopeptidase; Provisional
Probab=99.50 E-value=2.4e-12 Score=94.69 Aligned_cols=143 Identities=15% Similarity=0.132 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHH-HCCC--CCCEEECCCCCCCCCCCCCHHH
Q ss_conf 12346777676777423589999976401-------117899999999998-7098--3534412357646222256999
Q gi|254780435|r 100 STMTLDNALKLLIVKSANDIAVAIAESLC-------KTEKKFVQHMNNTSK-NLGL--SATHFMNAHGVVQHGHYTTARD 169 (336)
Q Consensus 100 ~~~tv~dll~~~li~S~Ndaa~aLAe~i~-------Gs~~~Fv~~MN~~a~-~lG~--~~T~f~n~~Gl~~~~~~tTa~D 169 (336)
++-++.++++.|+-.|.|--|.+|...+| ||.+.=++.+.+..+ ++|+ .+..+.|-+|| ...|..||+.
T Consensus 291 ~S~pL~eiv~~mnk~SdN~~AE~Ll~tlg~~~~~~pgs~~~g~~av~~~L~~~~Gid~~~~~i~DGSGL-SR~NriSp~~ 369 (477)
T PRK11113 291 QSAPLHDLLKIMLKKSDNMIADTLFRTIGHQRFNVPGSFRNGSDAVRQILRQQAGIDLGNTIIADGSGL-SRHNLIAPAT 369 (477)
T ss_pred ECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCC-CCCCCCCHHH
T ss_conf 388999999999853846999999999999834899988999999999999840989777777458888-8244729999
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCCC-CCCEEEEEEECCHHHHHEEEEEEE-ECCEEEEEEEEC
Q ss_conf 9999898763123311012302000174478601456566-897115332124112000234564-288689999837
Q gi|254780435|r 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAI-QGDQSLIAVILG 245 (336)
Q Consensus 170 la~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll~~-~~gv~G~KTG~t~~AG~~lv~~a~-~~g~~li~Vvlg 245 (336)
|..|.+++.+ +|...++...=-.-....++.++|.+... -.|-.-.|||+.... .||.+... ++|++++.++|=
T Consensus 370 l~~lL~~~~~-~~~~~~~~~sLPiaG~dGTL~~R~~~~~~~~~g~v~aKTGTL~gV-~sLAGYv~~~~G~~l~Fsi~v 445 (477)
T PRK11113 370 MMQVLQYIAQ-HDKELNLISMLPLAGYDGTLQYRGSLHQAPVDGKVSAKTGSLQGV-YNLAGFITTASGQRMAFVQFL 445 (477)
T ss_pred HHHHHHHHHH-CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC-EEEEEEEECCCCCEEEEEEEE
T ss_conf 9999999986-942788997488567788545556666776568699987435683-571799998995999999997
No 9
>PRK10662 beta-lactamase/D-alanine carboxypeptidase; Provisional
Probab=99.09 E-value=6.6e-09 Score=73.74 Aligned_cols=138 Identities=23% Similarity=0.264 Sum_probs=79.8
Q ss_pred CCCEEEEEE------------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 896297764------------39983075269899999999851357777876603517877200366443451012346
Q gi|254780435|r 37 NTGHVIAEN------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104 (336)
Q Consensus 37 ~tG~iL~~k------------n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv 104 (336)
+-|+++|.. +.|..+.+||+||.+|+.+++..+++|+++||++|.-. .. +....+-..++.+|+
T Consensus 57 ~~~~~~~~~yG~ad~~~~~~~t~dT~F~IaSiSK~fTa~ai~~Lve~Gkl~lddpv~~y--lP--~~~~~~~~~~~~ITl 132 (377)
T PRK10662 57 DGNQRVFRSYGETRPGNNVRPQLDSVIRIASITKLMTSEVLVKLADDGTVKLTDPLSKY--AP--PGVRVPTYNGTPITL 132 (377)
T ss_pred ECCEEEEEEEEEEECCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHCCCEECCCCHHHH--CC--CCCCCCCCCCCCCCH
T ss_conf 89999997136643577989999987870043199999999999977922067819996--86--513578679996569
Q ss_pred HHHHH-----------------------------HHHH-----------HHHHHHHHHHH---HHHC-CCHHHHHHHHHH
Q ss_conf 77767-----------------------------6777-----------42358999997---6401-117899999999
Q gi|254780435|r 105 DNALK-----------------------------LLIV-----------KSANDIAVAIA---ESLC-KTEKKFVQHMNN 140 (336)
Q Consensus 105 ~dll~-----------------------------~~li-----------~S~Ndaa~aLA---e~i~-Gs~~~Fv~~MN~ 140 (336)
++||. .+-- .-+|-.-..|+ |.+. -+.+.|++ ..
T Consensus 133 r~LltHtSGlp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~YSN~gy~llg~vie~vsG~~~~~~~~--~~ 210 (377)
T PRK10662 133 LNLATHTSALPREQPGGPAHRPVFVWPTREQRWKWLSTAKLKVAPGTQAAYSNLAFDLLADALANAAGKPYTQLLE--EK 210 (377)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCHHHHHH--HH
T ss_conf 9995620789876788732363223589999999984389988999744416288999999999996989999999--97
Q ss_pred HHHHCCCCCCEEECCC--------CC-----C-------CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9987098353441235--------76-----4-------622225699999998987631
Q gi|254780435|r 141 TSKNLGLSATHFMNAH--------GV-----V-------QHGHYTTARDMAILSWRIKTD 180 (336)
Q Consensus 141 ~a~~lG~~~T~f~n~~--------Gl-----~-------~~~~~tTa~Dla~l~~~~~~~ 180 (336)
-.+-|||++|.|.-+. |. . ..+-+||+.||++-.+..+..
T Consensus 211 If~PLgM~~T~~~~~~~~~~~~a~gy~~~~~~~~~~~~~AGgl~STa~Dmar~~~a~L~~ 270 (377)
T PRK10662 211 ITAPLGMKDTTFTPSPDQCKRLMVGKGASPCNNTLAAIGSGGVYSTPGDMMRWMQQFLSS 270 (377)
T ss_pred HHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCC
T ss_conf 341169876657789677514010567778778766677500288899999999998367
No 10
>PRK11289 ampC beta-lactamase; Provisional
Probab=99.05 E-value=7.2e-08 Score=67.42 Aligned_cols=125 Identities=20% Similarity=0.093 Sum_probs=74.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHHHHHH--------------
Q ss_conf 399830752698999999998513577778766035178772003664434510123467776767--------------
Q gi|254780435|r 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL-------------- 111 (336)
Q Consensus 46 n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~~~-------------- 111 (336)
+.|..+.+||+||.+|+.+++..+++|+++||++|.- ......++ +-+.+|++|||.-.
T Consensus 80 t~~T~F~iaSisK~fTa~~~~~Lv~~G~L~ldd~v~~--ylP~~~~~-----~~~~ITi~~Ll~HtsG~~p~~~~~~~~~ 152 (387)
T PRK11289 80 TQDTLFELGSVSKTFTATLAAYAQARGELSLSDPASK--YLPELKGS-----PFDGITLLHLATYTAGGLPLQVPDEVKD 152 (387)
T ss_pred CCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHH--HCCCCCCC-----CCCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 9998785211059999999999997696676672988--48265788-----8788649998754589974348765699
Q ss_pred --------HH-----------HHHHHHHHHHH---HHHCCCHHHHHHHHHHH-HHHCCCCCCEEECCC--------CCC-
Q ss_conf --------77-----------42358999997---64011178999999999-987098353441235--------764-
Q gi|254780435|r 112 --------IV-----------KSANDIAVAIA---ESLCKTEKKFVQHMNNT-SKNLGLSATHFMNAH--------GVV- 159 (336)
Q Consensus 112 --------li-----------~S~Ndaa~aLA---e~i~Gs~~~Fv~~MN~~-a~~lG~~~T~f~n~~--------Gl~- 159 (336)
-- .=+|-.-..|+ |.+.| ..|.+.|.++ .+-|||++|.|.-|. |..
T Consensus 153 ~~~~~~~~~~~~~~~~pG~~~~YsN~~~~llg~ive~vsg--~~~~~~l~~~if~PLgM~~T~~~~~~~~~~~~A~Gy~~ 230 (387)
T PRK11289 153 DAQLLAYFKAWQPAYAPGTQRLYSNPSIGLLGYLAAKSMG--QPFAQLMEQRLFPPLGLTHTYINVPAAEMADYAQGYNK 230 (387)
T ss_pred HHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHHHHHHHC--CCHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCC
T ss_conf 9999999984598889998666264899999999999969--89999999856444699776347995673566645356
Q ss_pred ---------------CCCCCCCHHHHHHHHHHHHH
Q ss_conf ---------------62222569999999898763
Q gi|254780435|r 160 ---------------QHGHYTTARDMAILSWRIKT 179 (336)
Q Consensus 160 ---------------~~~~~tTa~Dla~l~~~~~~ 179 (336)
..+-+||+.||++..+.++.
T Consensus 231 ~~~p~~~~~~~~~a~AGGl~STa~DL~kwl~a~L~ 265 (387)
T PRK11289 231 DGKPVRVNPGVLDAEAYGVKSTAADMLRFVQANLG 265 (387)
T ss_pred CCCEEECCCCCCCCCCEEEEECHHHHHHHHHHHCC
T ss_conf 89622048776667843567789999999998568
No 11
>pfam00144 Beta-lactamase Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
Probab=98.91 E-value=1.9e-08 Score=70.95 Aligned_cols=143 Identities=22% Similarity=0.267 Sum_probs=87.2
Q ss_pred CCEEEEEECCCCEEEEEEC-------------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCC
Q ss_conf 8568999978962977643-------------998307526989999999985135777787660351787720036644
Q gi|254780435|r 28 LPYYTLLDTNTGHVIAENY-------------PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94 (336)
Q Consensus 28 a~~~i~~d~~tG~iL~~kn-------------~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~ 94 (336)
.+.+.+.=.+.|+++|++. .|..+.+||+||.+|+.+++..+++|+++||++|. +......
T Consensus 14 ipG~~v~V~~~g~~~~~~~~G~~d~~~~~p~~~dT~f~iaSvsK~~ta~~i~~Lve~G~l~Ld~~v~--~ylP~~~---- 87 (327)
T pfam00144 14 IPGVAVAVTRDGKVVVDRGGGVADLEGGRPVTADTLFRIASVTKTFTAAAVLALVERGKLDLDDPVS--KYLPEFA---- 87 (327)
T ss_pred CCEEEEEEEECCEEEEEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCHH--HHCCCCC----
T ss_conf 9869999999999999986888447779889999858730127999999999999759988664325--4286667----
Q ss_pred CCCCCHHHHHHHHHH--------------------------HHHHH-----------HHHHHHHHHHH---HHCCCHHHH
Q ss_conf 345101234677767--------------------------67774-----------23589999976---401117899
Q gi|254780435|r 95 TFKKGSTMTLDNALK--------------------------LLIVK-----------SANDIAVAIAE---SLCKTEKKF 134 (336)
Q Consensus 95 ~l~~g~~~tv~dll~--------------------------~~li~-----------S~Ndaa~aLAe---~i~Gs~~~F 134 (336)
-...+.+|++|||. .+.-. =+|-....|+. .+.| ..|
T Consensus 88 -~~~~~~iTi~~LLsHtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~g~~llg~iie~~tg--~~~ 164 (327)
T pfam00144 88 -GSGKGGVTLRDLLTHTSGLPPLFAPDDLEEAAADAAELVAALAALPPVWPPGTRFGYSNTAYGLLGELLERVTG--QSY 164 (327)
T ss_pred -CCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHC--CCH
T ss_conf -78767865999944657999765565432346899999999983898689996566368069999999999879--789
Q ss_pred HHHHHH-HHHHCCCCCCEEECCCCCC-------------------------CCCCCCCHHHHHHHHHHHHH
Q ss_conf 999999-9987098353441235764-------------------------62222569999999898763
Q gi|254780435|r 135 VQHMNN-TSKNLGLSATHFMNAHGVV-------------------------QHGHYTTARDMAILSWRIKT 179 (336)
Q Consensus 135 v~~MN~-~a~~lG~~~T~f~n~~Gl~-------------------------~~~~~tTa~Dla~l~~~~~~ 179 (336)
-+.|.+ -.+-|||++|.|..+.-.. ..+-++||+||++..+.+..
T Consensus 165 ~~~~~~~I~~PLgm~~t~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~gl~st~~Dl~kf~~~l~~ 235 (327)
T pfam00144 165 EELLGDRILRPLGMTETELGVPEPGDPRDAAGYTGEGPPVRVSPGPLDAGAYGGLKSTARDLARFLLALLG 235 (327)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHC
T ss_conf 99999997742499777578982442670451135788754456556777775315679999999999848
No 12
>pfam02113 Peptidase_S13 D-Ala-D-Ala carboxypeptidase 3 (S13) family.
Probab=98.82 E-value=2.4e-07 Score=64.22 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=106.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHCCCC--CCEEECCCCCCCCCCCCCH
Q ss_conf 451012346777676777423589999976401------11789999999999870983--5344123576462222569
Q gi|254780435|r 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLC------KTEKKFVQHMNNTSKNLGLS--ATHFMNAHGVVQHGHYTTA 167 (336)
Q Consensus 96 l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~------Gs~~~Fv~~MN~~a~~lG~~--~T~f~n~~Gl~~~~~~tTa 167 (336)
|-.-++-++.++++.|+-.|.|--|.+|...++ |+.+.=.+.+.+..+++|+. +.++.|-+|| ...|..||
T Consensus 223 l~~~~S~pL~~iv~~m~k~S~N~~AE~L~~~lg~~~~~~~s~~~g~~~v~~~L~~~gi~~~~~~l~DGSGL-Sr~n~is~ 301 (383)
T pfam02113 223 LAVHQSAPLSDLLKKMMKKSDNLIAESLFREIGVAIKRPGSFEAGADAVRSILSTAGIDTANLVLRDGSGL-SRHNLVTA 301 (383)
T ss_pred EEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCC-CCCCCCCH
T ss_conf 99996979999999997418569999999999986279988899999999999974999556478448988-73345499
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEC---CCCCC-CCCCEEEEEEECCHHHHHEEEEEEE-ECCEEEEEE
Q ss_conf 999999898763123311012302000174478601---45656-6897115332124112000234564-288689999
Q gi|254780435|r 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT---NWAVG-TFLGADGMKTGFTCASGFNIVASAI-QGDQSLIAV 242 (336)
Q Consensus 168 ~Dla~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~---N~ll~-~~~gv~G~KTG~t~~AG~~lv~~a~-~~g~~li~V 242 (336)
++|..|.+++. +.|.+..+...=-.-...-++.|+ +++-. .-.|..-.|||+... -.||++... ++|++++.+
T Consensus 302 ~~l~~lL~~~~-~~~~~~~~~~sLPvaG~dGTL~~r~~~~~~~~~~~~G~v~aKTGTL~~-V~sLaGyv~~~~G~~l~Fs 379 (383)
T pfam02113 302 ATLAQLLQAIA-DQPALQALLDSLPVAGESGTLVGGTLRNRFKGTPAVGKVRAKTGSLTG-VYSLAGYVTTDSGRKLAFS 379 (383)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC-CEEEEEEEECCCCCEEEEE
T ss_conf 99999999998-694388999839826888855555555544577756759999850069-5794799997998999999
Q ss_pred EEC
Q ss_conf 837
Q gi|254780435|r 243 ILG 245 (336)
Q Consensus 243 vlg 245 (336)
+|-
T Consensus 380 i~~ 382 (383)
T pfam02113 380 FIS 382 (383)
T ss_pred EEE
T ss_conf 995
No 13
>pfam00905 Transpeptidase Penicillin binding protein transpeptidase domain. The active site serine is conserved in all members of this family.
Probab=98.71 E-value=3e-06 Score=57.53 Aligned_cols=136 Identities=18% Similarity=0.099 Sum_probs=85.4
Q ss_pred EEEEEECCCCEEEEEECC-----------------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCC
Q ss_conf 689999789629776439-----------------983075269899999999851357777876603517877200366
Q gi|254780435|r 30 YYTLLDTNTGHVIAENYP-----------------DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92 (336)
Q Consensus 30 ~~i~~d~~tG~iL~~kn~-----------------~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s 92 (336)
++|+||.+||+||.=-+. ...++|+|+-|.+|+..+|| +|.+++++.+..+.... .++.
T Consensus 2 a~Vv~d~~TG~IlAm~~~p~~~~~~~~~~~~n~a~~~~~~PGStfKp~~~aaaLe---~g~~~~~~~~~~~~~~~-~~~~ 77 (296)
T pfam00905 2 SAVVLDPKTGEVLAMAGKPSYDPNRDKEPLRNRAVQDVYEPGSTFKIFTALAALD---NGILKPEETFDDWPGLP-VGGY 77 (296)
T ss_pred EEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHH---CCCCCCCCCCCCCCCCC-CCCC
T ss_conf 5999989999299998689889787664222187668658848999999999998---79988761114776434-7993
Q ss_pred CC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC-EEECC---CCC-CC----
Q ss_conf 44---34510123467776767774235899999764011178999999999987098353-44123---576-46----
Q gi|254780435|r 93 NS---TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT-HFMNA---HGV-VQ---- 160 (336)
Q Consensus 93 ~~---~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T-~f~n~---~Gl-~~---- 160 (336)
.. .-...-.+++++ .|..|.|-.+.-|++.++ .+.+.+.++++|+... .+.-| .|. +.
T Consensus 78 ~~~n~~~~~~G~~tl~~----al~~S~N~~~~~l~~~lg------~~~~~~~~~~~G~g~~~~~~~~~e~~g~~~~~~~~ 147 (296)
T pfam00905 78 TIKDWNQDGSGTITLRE----ALEYSSNWYFQQLALKLG------KDKLRDYLKKFGYGNKTGIGLPGESAGILPPRYRG 147 (296)
T ss_pred CEECCCCCCCCCCCHHH----HHHHCCCHHHHHHHHHCC------CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 22468999887554999----998509677899999708------47899999971888776888864435667775543
Q ss_pred ---------CCCCCCHHHHHHHHHHHHH
Q ss_conf ---------2222569999999898763
Q gi|254780435|r 161 ---------HGHYTTARDMAILSWRIKT 179 (336)
Q Consensus 161 ---------~~~~tTa~Dla~l~~~~~~ 179 (336)
.....|+-+|+.....+..
T Consensus 148 ~~~~~~~G~G~~~vTplq~a~aya~iAN 175 (296)
T pfam00905 148 DGATTAWGQGSLTITPLQQAQAYATIAN 175 (296)
T ss_pred CHHHEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 1010101067662269999999999871
No 14
>TIGR03423 pbp2_mrdA penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape).
Probab=98.71 E-value=1.4e-05 Score=53.49 Aligned_cols=109 Identities=18% Similarity=0.183 Sum_probs=75.2
Q ss_pred CCEEEEEECCCCEEEEEEC---------------------------------CCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8568999978962977643---------------------------------9983075269899999999851357777
Q gi|254780435|r 28 LPYYTLLDTNTGHVIAENY---------------------------------PDHPWNPASLTKLMTAYVVFSFLKEKKA 74 (336)
Q Consensus 28 a~~~i~~d~~tG~iL~~kn---------------------------------~~~~~~~AS~tKlmTa~~~~~~i~~g~~ 74 (336)
.-++|+||.+||+||.--+ ....++|+|+-|++|+..+|| +|.+
T Consensus 248 ~g~~Vvmd~~TGeILAmas~P~fdpN~~~~~~~~~~~~~~~~~~~~~~~Nrav~~~yePGStfK~~t~aaaLe---~g~i 324 (592)
T TIGR03423 248 RGAVVVMDPRTGEILAMVSTPSFDPNLFVDGISSADYKALLNDPDRPLLNRAIQGVYPPGSTFKPFVALAALE---EGVI 324 (592)
T ss_pred CEEEEEEECCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHH---CCCC
T ss_conf 3569999668884899961788770230378798899987439665421201122446872689999999997---5999
Q ss_pred CCCCEEEECHHHHHCCCCCCC--CCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 876603517877200366443--4510-123467776767774235899999764011178999999999987098353
Q gi|254780435|r 75 MLTTPITISKNASEYPPSNST--FKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 (336)
Q Consensus 75 ~ld~~v~vs~~~~~~~~s~~~--l~~g-~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T 150 (336)
++++.+..+- ....++..+. -..| ..+++++. +..|+|-...-+|+.++ .+.|-+.++++|+...
T Consensus 325 ~~~~~~~~~g-~~~~~~~~i~d~~~~~~g~lt~~~~----l~~SsNvg~~~ia~~lg------~~~~~~~~~~fGfg~~ 392 (592)
T TIGR03423 325 TPDTRINCPG-YFQLGGRRFRCWKRGGHGRVDLRKA----IEESCDVYFYQLALRLG------IDKIAEYAKKFGFGQK 392 (592)
T ss_pred CCCCEEECCC-CCCCCCCCCCCCCCCCCCEECHHHH----HHEEECHHHHHHHHHCC------HHHHHHHHHHCCCCCC
T ss_conf 9985896078-3025985230478888630145544----10383399978988618------7889999984678877
No 15
>PRK10795 penicillin-binding protein 2; Provisional
Probab=98.60 E-value=2.2e-05 Score=52.25 Aligned_cols=224 Identities=16% Similarity=0.132 Sum_probs=123.0
Q ss_pred CEEEEEECCCCEEEEEE-----CC----------------------------CCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 56899997896297764-----39----------------------------9830752698999999998513577778
Q gi|254780435|r 29 PYYTLLDTNTGHVIAEN-----YP----------------------------DHPWNPASLTKLMTAYVVFSFLKEKKAM 75 (336)
Q Consensus 29 ~~~i~~d~~tG~iL~~k-----n~----------------------------~~~~~~AS~tKlmTa~~~~~~i~~g~~~ 75 (336)
-++++||..||+||.-- |. ...++|+|+-|++|+..+|+ +|.++
T Consensus 271 gavVvmd~~TGeILAmaS~P~fdpN~~~~~~~~~~~~~~~~~~~~p~~Nra~~~~yePGStfK~~t~~aaLe---~g~i~ 347 (619)
T PRK10795 271 AAVVVTDPRTGGILALVSNPSYDPNLFVDGISSKDYSGLLNDPNTPLVNRATQGVYPPASTVKPYVAVSALS---AGVIT 347 (619)
T ss_pred CEEEEEECCCCCEEEEEECCCCCHHHHCCCCCHHHHHHHHCCCCCCCCCHHEECCCCCCCCHHHHHHHHHHH---CCCCC
T ss_conf 259999679884899981687784664157787889986338676520211011668986069999999997---49999
Q ss_pred CCCEEEECHHHHHCCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 76603517877200366443451-----0123467776767774235899999764011178999999999987098353
Q gi|254780435|r 76 LTTPITISKNASEYPPSNSTFKK-----GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 (336)
Q Consensus 76 ld~~v~vs~~~~~~~~s~~~l~~-----g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T 150 (336)
+++.+..+ .....++....++. ...+++.+. |..|+|....-+|..+| .+.|.+.++.+|+-..
T Consensus 348 ~~~~~~~~-g~~~~~~~~~~~~~~~~~g~G~~~~~~a----l~~SsNv~~~~i~~~lg------~~~~~~~~~~fG~g~~ 416 (619)
T PRK10795 348 RNTSLFDP-GWWQLPGSEKRYRDWKKWGHGRLNVTKS----LEESADTFFYQVAYDMG------IDRLSEWMGKFGYGHY 416 (619)
T ss_pred CCCEEEEC-CCEEECCCCCCCCCCCCCCCCCCHHHHH----HHHCCCHHHHHHHHHHC------CHHHHHHHHHCCCCCC
T ss_conf 99779609-9337678862256688899974008889----88635599999988705------2255445553278876
Q ss_pred E-EECC---CCC-CC---------------------CCC---CCCHHHHHHHHHHHHHH----HHHHHCCCCE--EECCC
Q ss_conf 4-4123---576-46---------------------222---25699999998987631----2331101230--20001
Q gi|254780435|r 151 H-FMNA---HGV-VQ---------------------HGH---YTTARDMAILSWRIKTD----FPQYMHYFQI--KGLEI 195 (336)
Q Consensus 151 ~-f~n~---~Gl-~~---------------------~~~---~tTa~Dla~l~~~~~~~----~p~~~~~~~~--~~~~~ 195 (336)
. +.-| .|+ |+ -+| ..|+--||.....++.+ -|.+..-... ....+
T Consensus 417 tgi~lp~E~~G~~p~~~w~~~~~~~~w~~~~~~~~siGQG~~~~TPlQla~~~~aiaN~G~~~~P~lv~~~~~~~~~v~~ 496 (619)
T PRK10795 417 TGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMILINDGIVKVPHLLMSTAEDGKQVPW 496 (619)
T ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEE
T ss_conf 68887665578678756654202466664545554120425563599999999999639808634799875148966420
Q ss_pred ---CCEEE------------------EEC-C----CCCCCCCCEEEEEEECCHHHH------H-------------EEEE
Q ss_conf ---74478------------------601-4----565668971153321241120------0-------------0234
Q gi|254780435|r 196 ---KGKKY------------------PNT-N----WAVGTFLGADGMKTGFTCASG------F-------------NIVA 230 (336)
Q Consensus 196 ---~~~~~------------------~N~-N----~ll~~~~gv~G~KTG~t~~AG------~-------------~lv~ 230 (336)
..... .+. + +.....++-.++|||+....| | .|++
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~m~~Vv~~~~GT~~~~~~~~~~~vaGKTGTAqv~~~~~~~~~~~~~~~~~~~~hawf~g 576 (619)
T PRK10795 497 VQPHEPPVGDIHSGYWEIAKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTA 576 (619)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHEECCCCEEEHHCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 36665544555778999999999986727995256000589967999825324636678753234334545677759999
Q ss_pred EEEECCEEEEEEEECC--CCHHHHHHHHHHHHHHHHHH
Q ss_conf 5642886899998378--98667899999999999851
Q gi|254780435|r 231 SAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGFYN 266 (336)
Q Consensus 231 ~a~~~g~~li~Vvlg~--~~~~~r~~~~~~Ll~~~f~~ 266 (336)
.|--++-++.++|+=. .....-..-++++++|.+-+
T Consensus 577 faP~d~P~~av~V~ve~gg~G~~aapi~r~i~~~~l~~ 614 (619)
T PRK10795 577 FAPYNNPQVAVAIILENGGAGPAVGTIMRQILDHIMLG 614 (619)
T ss_pred EEECCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 97768988999999979984026899999999999648
No 16
>PRK13128 D-aminopeptidase; Reviewed
Probab=98.34 E-value=3e-05 Score=51.50 Aligned_cols=232 Identities=12% Similarity=0.088 Sum_probs=107.7
Q ss_pred CCCCEEEEEECCCCEEEEEE-------------CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE--CHH-----
Q ss_conf 47856899997896297764-------------3998307526989999999985135777787660351--787-----
Q gi|254780435|r 26 NKLPYYTLLDTNTGHVIAEN-------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI--SKN----- 85 (336)
Q Consensus 26 ~~a~~~i~~d~~tG~iL~~k-------------n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~v--s~~----- 85 (336)
...+...|.=..-|+++|+| +.|.++++||+||-+|+..++.-+++|++ ||+.|.- ++-
T Consensus 20 ~~~PG~aVaVvkdGkvv~~kgyG~adle~~~Pvt~dT~F~IaSvTK~FTaaail~Lveegkl-LDdpV~~yLP~f~~~~~ 98 (518)
T PRK13128 20 YKGPGGAVAVVKDGEVVLRHAWGFADLARRKAMTPETRMPICSVSKQFTCAVLLDCIGEPEM-LDAALAAYLDQFEDPRP 98 (518)
T ss_pred CCCCCEEEEEEECCEEEEEEEEEEECCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHCCCCCCCCC
T ss_conf 78995899999999999994054442677988999987864313799999999999862986-56637875878777873
Q ss_pred -----HHHCCCCCC--------CCCCCHHHHHHHHHHHHH------------HHHHHHHHHHHH---HHHCC-CHHHHHH
Q ss_conf -----720036644--------345101234677767677------------742358999997---64011-1789999
Q gi|254780435|r 86 -----ASEYPPSNS--------TFKKGSTMTLDNALKLLI------------VKSANDIAVAIA---ESLCK-TEKKFVQ 136 (336)
Q Consensus 86 -----~~~~~~s~~--------~l~~g~~~tv~dll~~~l------------i~S~Ndaa~aLA---e~i~G-s~~~Fv~ 136 (336)
.....|-.- +..+...++-++.+..+- -.=+|..-..|+ |.+.| +.+.|++
T Consensus 99 TIr~LLsHtSGL~d~~~l~~l~g~~~~~~~~~~~~~~li~~~k~l~f~PGt~~~YSN~gY~lLg~IIE~vSG~s~~~~v~ 178 (518)
T PRK13128 99 AVRDLCNNQSGLRDYWALTVLCGAAPEGIFLPDQAQNLLRRLKTTHFAPGTHYSYCNGNFRILADLIEQHTGRSLADLLA 178 (518)
T ss_pred HHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 49985136578974011232136882236688999999974443678999867866389999999999995998999999
Q ss_pred HHHHHHHHCCCCCCEEECCCCCCC-------------------------CCCCCCHHHHHHHHHHHHHH----HHHHHCC
Q ss_conf 999999870983534412357646-------------------------22225699999998987631----2331101
Q gi|254780435|r 137 HMNNTSKNLGLSATHFMNAHGVVQ-------------------------HGHYTTARDMAILSWRIKTD----FPQYMHY 187 (336)
Q Consensus 137 ~MN~~a~~lG~~~T~f~n~~Gl~~-------------------------~~~~tTa~Dla~l~~~~~~~----~p~~~~~ 187 (336)
. .-.+-|||++|.|..-+-+++ .+-+||+.||++-.+.+-.. ...+.++
T Consensus 179 e--rIF~PLGM~~t~~~~d~~i~~~a~gY~~~~~~g~~p~~~~~~~~G~gGl~SSv~DL~~W~~~l~~~r~~~~~l~~~~ 256 (518)
T PRK13128 179 E--RIFAPAGMKTAELIPDTALFDECTGYEGDTVRGFLPAINRIHWLGDAGICASLDDMIAWEQFIDRTRHDENGLYRRL 256 (518)
T ss_pred H--HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 7--58557899975357555577655555666756501155566532574112569999999998744678847899975
Q ss_pred CCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCH--HHHHEEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 23020001744786014565668971153321241--1200023456428868999983789866789999999999985
Q gi|254780435|r 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC--ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265 (336)
Q Consensus 188 ~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~--~AG~~lv~~a~~~g~~li~Vvlg~~~~~~r~~~~~~Ll~~~f~ 265 (336)
.....+..+...-+-.-..+..|.| .|+=... -.||+--. +.-=++++-+|||-.... ....-+.++++-+..
T Consensus 257 ~~p~~~~dg~~a~YG~Gw~i~~~~G---~k~i~HgG~~~Gfrs~~-~~~Pee~LsVVVLsN~~~-~~~~~a~~~~~~~l~ 331 (518)
T PRK13128 257 SVPQTFADGAPAPYGFGLKFEETGG---KRLTGHGGALRGWRCQR-WHCADERLSTIVMFNFEG-NASDAALKMMNAALG 331 (518)
T ss_pred CCCCCCCCCCCCCEEEEEEEEEECC---EEEEECCCCCHHHEEEE-EECCCCCEEEEEEECCCC-CCCHHHHHHHHHHHC
T ss_conf 1775277888777042489983189---78997278774243664-637633527999966888-743579999998527
No 17
>COG2027 DacB D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane]
Probab=98.33 E-value=3.9e-05 Score=50.79 Aligned_cols=143 Identities=14% Similarity=0.075 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHH-HCCC--CCCEEECCCCCCCCCCCCCHHHH
Q ss_conf 1234677767677742358999997640111------7899999999998-7098--35344123576462222569999
Q gi|254780435|r 100 STMTLDNALKLLIVKSANDIAVAIAESLCKT------EKKFVQHMNNTSK-NLGL--SATHFMNAHGVVQHGHYTTARDM 170 (336)
Q Consensus 100 ~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs------~~~Fv~~MN~~a~-~lG~--~~T~f~n~~Gl~~~~~~tTa~Dl 170 (336)
.+-++.++|.-||-.|.|.-|.+|...+|+. ...-++.|-+... +.|. .+....|-||| ..+|..|+|-|
T Consensus 291 ~S~PL~~lLk~m~k~SnN~~Ae~L~~~ig~~~~~~gs~~~~~~~v~~~l~~~~GId~~~~vL~DGSGL-Sr~Nritpr~l 369 (470)
T COG2027 291 QSAPLSQLLKDMNKYSDNLMAEALFRAIGGAIKRPGSVSAAADAVRQILLQRAGIDLAGLVLADGSGL-SRDNRITPRTL 369 (470)
T ss_pred CCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC-CHHCCCCHHHH
T ss_conf 17888999999986150899999999845344787426677899999999873988566487418988-71102298999
Q ss_pred HHHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEE-ECCEEEEEEEECC
Q ss_conf 999898763123311012302000174478601456566897115332124112000234564-2886899998378
Q gi|254780435|r 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI-QGDQSLIAVILGA 246 (336)
Q Consensus 171 a~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~-~~g~~li~Vvlg~ 246 (336)
..+.+++.+ .|....+...=-.-..+.++.|+=+.. .-.|-.=.|||+...- ++|++... ++|+++..|++-.
T Consensus 370 ~~~Lq~~~~-~~~~~~~~dsLPIAG~~GTL~~R~~~~-~~~G~v~aKTGTL~gV-~aLaGyv~~~~g~~l~Fai~~N 443 (470)
T COG2027 370 VQLLQAAAQ-SPAAAALIDSLPIAGVDGTLRNRLRGT-GAAGKVRAKTGTLTGV-SALAGYVTTASGRKLAFAIILN 443 (470)
T ss_pred HHHHHHHHC-CCHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCEEEEECCCCCC-HHHEEEEECCCCCEEEEEEECC
T ss_conf 999999872-971778998477377787501314467-8787178863123240-4111068768898899999658
No 18
>PRK03642 hypothetical protein; Provisional
Probab=98.06 E-value=1.6e-05 Score=53.06 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=42.8
Q ss_pred CEEEEEECCCCEEEEEEC--------------------CCCCCCCHHHHHHH-HHHHHHHHCCCCCCCCCCEEE
Q ss_conf 568999978962977643--------------------99830752698999-999998513577778766035
Q gi|254780435|r 29 PYYTLLDTNTGHVIAENY--------------------PDHPWNPASLTKLM-TAYVVFSFLKEKKAMLTTPIT 81 (336)
Q Consensus 29 ~~~i~~d~~tG~iL~~kn--------------------~~~~~~~AS~tKlm-Ta~~~~~~i~~g~~~ld~~v~ 81 (336)
+.+.++=+.-|+|+|.|. .|..+.+||+||.+ |+..++.-+++|+++||++|.
T Consensus 56 PG~~v~V~r~Gkiv~~ka~G~~~~~~g~~~~~~~~p~t~dTiF~iAS~TK~~~T~~Alm~LvE~Gkl~LddpV~ 129 (432)
T PRK03642 56 PGANLLVIKDNHIVKRKAWGYAKKYDGSTLLAHPIKATTNTMYDLASNTKMYATNFALQKLVSEGKLDVNDLIS 129 (432)
T ss_pred CCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 96599999899999984114543356643334688899886766354609999999999999869877422798
No 19
>COG1680 AmpC Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]
Probab=97.84 E-value=5.6e-05 Score=49.82 Aligned_cols=134 Identities=22% Similarity=0.191 Sum_probs=75.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHH---HHHCC--C--------CCCCCCC--------CH----
Q ss_conf 3998307526989999999985135777787660351787---72003--6--------6443451--------01----
Q gi|254780435|r 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---ASEYP--P--------SNSTFKK--------GS---- 100 (336)
Q Consensus 46 n~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~---~~~~~--~--------s~~~l~~--------g~---- 100 (336)
..+..+.+||+||.+|+.++...+++|+++||++|.-.-- ..... . -+.+|.. ..
T Consensus 84 ~~~t~f~i~S~TK~~ta~~i~~LveeG~l~lddpV~~ylP~~~~~~~~~~~iTi~~LL~htSGl~~~~~~~~~~~~~~~~ 163 (390)
T COG1680 84 TPPTVFRIASVTKSFTATLLGKLVEEGKLDLDDPVSKYLPEGKDPATGGAPITLRDLLTHTSGLPFPEDYAYAVPKRLVQ 163 (390)
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 99854675101799999999999986997610448875786445455767763999955447998744443232244322
Q ss_pred -HHHHHHHHHHHHH--H--------HHHHHHHHHH---HHHC-CCHHHHHHHHHHHHHHCCCCCCEEECCCCCC------
Q ss_conf -2346777676777--4--------2358999997---6401-1178999999999987098353441235764------
Q gi|254780435|r 101 -TMTLDNALKLLIV--K--------SANDIAVAIA---ESLC-KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------ 159 (336)
Q Consensus 101 -~~tv~dll~~~li--~--------S~Ndaa~aLA---e~i~-Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~------ 159 (336)
.-.+.+.+..... . =.|-....|+ |.++ -+.+.|++ .+-.+-|||++|+|.-+....
T Consensus 164 ~~~~~~~~l~~~~~~~~~~pG~~~~Ysn~~~~lLg~ive~v~G~~~~~~~~--~~i~~PLGm~~t~~~~~~~~~~~~~~~ 241 (390)
T COG1680 164 DQEAALEYLASLPPELAPPPGTAFAYSNSNYGLLGAILERVTGKPLEELLR--ERIFEPLGMTSTGFGPPPAPQARLAAG 241 (390)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCHHHHHH--HHHHCCCCCCCCCCCCCCCHHCCCCCC
T ss_conf 068899999844444678998733452544999999999872998999999--987576788765555770021011113
Q ss_pred -------------------------CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf -------------------------6222256999999989876312
Q gi|254780435|r 160 -------------------------QHGHYTTARDMAILSWRIKTDF 181 (336)
Q Consensus 160 -------------------------~~~~~tTa~Dla~l~~~~~~~~ 181 (336)
+.+-++|++||++....++...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~t~~D~~~~~~~~l~~~ 288 (390)
T COG1680 242 LAPAVGGGGEVDDPGTFGLGSALAGAGGLFSTARDMARFGQALLNGG 288 (390)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHCCC
T ss_conf 46665777642566654556655565636631652778999983866
No 20
>PRK09506 mrcB penicillin-binding protein 1b; Reviewed
Probab=97.83 E-value=0.0025 Score=39.74 Aligned_cols=228 Identities=17% Similarity=0.103 Sum_probs=115.9
Q ss_pred EEEEEECCCCEEEEEEC------------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCE-----EEECH-HHHHCCC
Q ss_conf 68999978962977643------------998307526989999999985135777787660-----35178-7720036
Q gi|254780435|r 30 YYTLLDTNTGHVIAENY------------PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP-----ITISK-NASEYPP 91 (336)
Q Consensus 30 ~~i~~d~~tG~iL~~kn------------~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~-----v~vs~-~~~~~~~ 91 (336)
+.+++|..||+|+.=-. .+.+++|+|+.|-.+.+.+++.- +...+++. +++.. +......
T Consensus 471 A~VviD~~TG~V~AmVGG~d~~~sgfNRA~~A~RQ~GSt~KPfvY~aAL~~~--~~~~~~T~l~D~Pi~~~~~~G~~W~P 548 (839)
T PRK09506 471 AMVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQP--DKYRLNTWIADAPISLRQPNGQVWSP 548 (839)
T ss_pred EEEEEECCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCC--CCCCCCCEECCCCEEEECCCCCCCCC
T ss_conf 7999978998599997488877667613454677997651189999998667--99777645245354864689874388
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCC-CCCCCCCCCCHHHH
Q ss_conf 64434510123467776767774235899999764011178999999999987098353441235-76462222569999
Q gi|254780435|r 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH-GVVQHGHYTTARDM 170 (336)
Q Consensus 92 s~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~-Gl~~~~~~tTa~Dl 170 (336)
.+..-+-.-.+|+++ .|..|-|-+|+-|+..+| ++..-+.++.+|.....+ ++. .+.=...-.|+.||
T Consensus 549 ~Nyd~~~~G~VtLr~----ALa~S~N~paVrL~~~vG------l~~v~~~~~~lGi~~~~~-~~~pSlaLGa~evSplem 617 (839)
T PRK09506 549 QNDDRRYSGRVMLVD----ALTRSMNVPTVNLGMALG------LPAVTDTWIKLGVPKDQL-NPVPAMLLGALNLTPIEV 617 (839)
T ss_pred CCCCCCCCCHHHHHH----HHHHCCCHHHHHHHHHHC------HHHHHHHHHHCCCCCCCC-CCCCCEEECCCCCCHHHH
T ss_conf 648998657121999----998583899999999879------899999999869986668-888673107788889999
Q ss_pred HHHHHHHHHHHHHHHCCCCEEECCC-CCEEEEE----------------------------CCCCC-CCCCC-EEEEEEE
Q ss_conf 9998987631233110123020001-7447860----------------------------14565-66897-1153321
Q gi|254780435|r 171 AILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPN----------------------------TNWAV-GTFLG-ADGMKTG 219 (336)
Q Consensus 171 a~l~~~~~~~~p~~~~~~~~~~~~~-~~~~~~N----------------------------~N~ll-~~~~g-v~G~KTG 219 (336)
|..-..+.. .=.+.+......+.. .+..+.. |.+-+ ..+++ -.++|||
T Consensus 618 A~AYatfAN-~G~~~~p~~I~~V~d~~G~vl~~~~p~~~rvis~~~A~l~~~~L~~Vv~~GTgr~l~~~~p~~~vAGKTG 696 (839)
T PRK09506 618 AQAFQTIAS-GGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTG 696 (839)
T ss_pred HHHHHHHHC-CCEECCCEEEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEECC
T ss_conf 999999975-9877388899999989999883069986503799999999999999865255244662489985147888
Q ss_pred CCHHHHHEEEEEEEECCEEEEEEEECCCCHHH-H---HHHHHHHHHHHHHHCCCCCCC
Q ss_conf 24112000234564288689999837898667-8---999999999998514532023
Q gi|254780435|r 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNT-R---NKVSASLLSMGFYNKTDRKKI 273 (336)
Q Consensus 220 ~t~~AG~~lv~~a~~~g~~li~Vvlg~~~~~~-r---~~~~~~Ll~~~f~~f~~~~~~ 273 (336)
+|+...- .=.+=-.+..+.+|=+|.++... + ..-+..+..--+++-....+.
T Consensus 697 TTnd~rD--aWFvG~T~~~v~~VWvG~DdN~p~~ltG~sgAl~iw~~~m~~~~~~~l~ 752 (839)
T PRK09506 697 TTNNNVD--TWFAGIDGSEVTITWVGRDNNQPTKLYGASGAMTIYQRYLANQTPTPLN 752 (839)
T ss_pred CCCCCEE--EEEEEECCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 8799821--6998536995999998256899878864132799999999736997766
No 21
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; InterPro: IPR000667 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This family of serine peptidases belong to MEROPS peptidase family S13 (D-Ala-D-Ala carboxypeptidase C, clan SE). The predicted active site residues for members of this family and family S12 occur in the motif SXXK. D-Ala-D-Ala carboxypeptidase C is involved in the metabolism of cell components ; it is synthesised with a leader peptide to target it to the cell membrane . After cleavage of the leader peptide, the enzyme is retained in the membrane by a C-terminal anchor . There are three families of serine-type D-Ala-D-Ala peptidase (designated S11, S12 and S13), which are also known as low molecular weight penicillin-binding proteins . Family S13 comprises D-Ala-D-Ala peptidases that have sufficient sequence similarity around their active sites to assume a distant evolutionary relationship to other clan members; members of the S13 family also bind penicillin and have D-amino-peptidase activity. Proteases of family S11 have exclusive D-Ala-D-Ala peptidase activity, while some members of S12 are C beta-lactamases . ; GO: 0004185 serine carboxypeptidase activity, 0006508 proteolysis.
Probab=97.76 E-value=0.00036 Score=44.92 Aligned_cols=167 Identities=16% Similarity=0.163 Sum_probs=122.6
Q ss_pred CCCCCCEEE-ECHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHH
Q ss_conf 778766035-17877200366443451012346777676777423589999976401-------1178999999999987
Q gi|254780435|r 73 KAMLTTPIT-ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-------KTEKKFVQHMNNTSKN 144 (336)
Q Consensus 73 ~~~ld~~v~-vs~~~~~~~~s~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~-------Gs~~~Fv~~MN~~a~~ 144 (336)
=|++...+. -+ .....+.++|-.-.+.++.+||.-||=.|.|-.|.+|.+.|+ +|-+.-++..+....+
T Consensus 242 GI~~~g~~~r~~---~~~~~~~~PLa~~~S~PL~~Ll~~mmk~SdN~~Ae~l~r~~~~~~~~~~~Sw~~g~~av~s~L~~ 318 (427)
T TIGR00666 242 GITVSGKILRAA---QAPEAGQVPLASHQSAPLIDLLKKMMKKSDNLIAEALFREVAVARIKRPGSWQKGVEAVKSILQE 318 (427)
T ss_pred CCCEEEEEEECC---CCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 896213677437---88875656533214886689999986210633378887631543126752078889999875444
Q ss_pred CCC--CCCEEECCCCCCCCCCCCCHHHHHHHHHHHH-HHHHHHHCCCCEEECCCCCEEE-EEC--CCCCCC-CCCEEEEE
Q ss_conf 098--3534412357646222256999999989876-3123311012302000174478-601--456566-89711533
Q gi|254780435|r 145 LGL--SATHFMNAHGVVQHGHYTTARDMAILSWRIK-TDFPQYMHYFQIKGLEIKGKKY-PNT--NWAVGT-FLGADGMK 217 (336)
Q Consensus 145 lG~--~~T~f~n~~Gl~~~~~~tTa~Dla~l~~~~~-~~~p~~~~~~~~~~~~~~~~~~-~N~--N~ll~~-~~gv~G~K 217 (336)
-|+ .++...+.|||. ..|.-|++-|.-+..++. -+++....|...=-+-...-++ ..+ |.+... ..|-.-.|
T Consensus 319 ~G~d~~~~~L~DGSGLS-r~nlv~p~tl~q~L~~~aGP~~~~~~~~~~~LP~AG~~Gtlv~~Rl~~~~~~~p~~GkvrAK 397 (427)
T TIGR00666 319 AGVDTGNVILRDGSGLS-RHNLVTPKTLVQLLQYIAGPDQSAKLAYLDSLPVAGRSGTLVGERLLDGLKDTPLVGKVRAK 397 (427)
T ss_pred CCCEECCEEEEECCCCC-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf 04000352787145525-44566499999999985388871135688734446899840478888766177987437752
Q ss_pred EECCHHHHHEEEEEEEE-CCEEEEEEEE
Q ss_conf 21241120002345642-8868999983
Q gi|254780435|r 218 TGFTCASGFNIVASAIQ-GDQSLIAVIL 244 (336)
Q Consensus 218 TG~t~~AG~~lv~~a~~-~g~~li~Vvl 244 (336)
||.... =++|++.++. .|+++..|.+
T Consensus 398 TGSL~g-V~sL~G~~t~~~G~~~aF~~~ 424 (427)
T TIGR00666 398 TGSLTG-VYSLAGYVTNASGKKLAFSFL 424 (427)
T ss_pred CCCCCE-EEEEEEEEECCCCCEEEEEEE
T ss_conf 233421-323477788368988999888
No 22
>COG0768 FtsI Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]
Probab=96.99 E-value=0.012 Score=35.71 Aligned_cols=234 Identities=17% Similarity=0.055 Sum_probs=119.7
Q ss_pred CCCCCEEEEEECCCCEEEEEE-------C-------------------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 447856899997896297764-------3-------------------99830752698999999998513577778766
Q gi|254780435|r 25 TNKLPYYTLLDTNTGHVIAEN-------Y-------------------PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78 (336)
Q Consensus 25 ~~~a~~~i~~d~~tG~iL~~k-------n-------------------~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~ 78 (336)
....-+++++|..||+||.=- | ....+||+|+-|.+|+..+|+.-..+....+.
T Consensus 264 ~~~~g~~vv~dp~tGeILAmas~P~ydpn~~~~~~~~~~~~~~~~n~a~~~~yePGStfK~~t~aaaL~~g~~~~~~~~~ 343 (599)
T COG0768 264 KAKGGAAVVLDPKTGEILAMASSPSYDPNLFVSSKDYDKPRKPLLNRAVTGTYEPGSTFKPITAAAALETGNTGLFDPGS 343 (599)
T ss_pred CCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 66604899981788848999568999986223321002334202447551704782108999999999769985348985
Q ss_pred EEEECHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC-CEEECC--
Q ss_conf 03517877200366443451012346777676777423589999976401117899999999998709835-344123--
Q gi|254780435|r 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNA-- 155 (336)
Q Consensus 79 ~v~vs~~~~~~~~s~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~-T~f~n~-- 155 (336)
.+..+.......+...+-..+..++ +...+..|+|..-.-||..+|- +.+-+.+++.|+-. |.+.=|
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~al~~SsNv~f~~la~~~g~------~~~~~~~~~fGfg~~t~idl~~e 413 (599)
T COG0768 344 VLDGNGPKIRIWGRTGHDYGGRPLT----LTEALQKSSNVGFAKLALRLGP------DGLYDYLKKFGFGQKTGIDLPGE 413 (599)
T ss_pred EEECCCCEEEECCCCCCCCCCCCCC----HHHHHHHHCHHHHHHHHHHHCH------HHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 4736986164188156787763128----9999887080999999998585------88999998769987556798664
Q ss_pred -CCC-CCC---------------CC--CCCHHHHHHHHHHHHHH----HHHHHCCCCEEE-----C--CCCCE-------
Q ss_conf -576-462---------------22--25699999998987631----233110123020-----0--01744-------
Q gi|254780435|r 156 -HGV-VQH---------------GH--YTTARDMAILSWRIKTD----FPQYMHYFQIKG-----L--EIKGK------- 198 (336)
Q Consensus 156 -~Gl-~~~---------------~~--~tTa~Dla~l~~~~~~~----~p~~~~~~~~~~-----~--~~~~~------- 198 (336)
.|+ |+. +| ..|+--||.....++.+ -|.+.+-..... . ....+
T Consensus 414 ~~g~~p~~~~~~~~~~~~~~~siGQ~~~vTPlQla~~~a~iaN~G~~~~P~lv~~~~~~~~~~~~~~~~~~~~~is~~~~ 493 (599)
T COG0768 414 TSGLLPSREPWRWGPIDLATLSIGQGLLVTPLQLAQAYATIANGGKLVKPHLVKGIEDPVGENKKEPPVLKKRVISPETA 493 (599)
T ss_pred CCCCCCCCHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 25657982001367211244047874020899999999999629979425897124465554212466434555899999
Q ss_pred --------EEEECC----CCCCC-CCCEEEEEEECCHHHHH------------EEEEEEEECC-EEEEEEEECCCC----
Q ss_conf --------786014----56566-89711533212411200------------0234564288-689999837898----
Q gi|254780435|r 199 --------KYPNTN----WAVGT-FLGADGMKTGFTCASGF------------NIVASAIQGD-QSLIAVILGALD---- 248 (336)
Q Consensus 199 --------~~~N~N----~ll~~-~~gv~G~KTG~t~~AG~------------~lv~~a~~~g-~~li~Vvlg~~~---- 248 (336)
...+.. ..-.. -.+-.++|||+-..+.. .+++.|--++ +-.++|++-.+.
T Consensus 494 ~~v~~~m~~Vv~~~~gg~~~~a~v~g~~iaGKTGTAq~~~~~~~~y~~~~~~~~Fvg~aP~d~P~~~v~v~v~~~~~~~g 573 (599)
T COG0768 494 EKVREGMRAVVNDGGGGTGKAAAVPGYRIAGKTGTAQKAGPGGGGYSKGRYHAWFVGFAPADNPKYAVAVLVDNPGGGYG 573 (599)
T ss_pred HHHHHHHHHHEECCCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCC
T ss_conf 99999999877178776411045689523765011503347888634565348999974168997999999977887762
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 66789999999999985145
Q gi|254780435|r 249 RNTRNKVSASLLSMGFYNKT 268 (336)
Q Consensus 249 ~~~r~~~~~~Ll~~~f~~f~ 268 (336)
...-..-.+.++++.+..+.
T Consensus 574 ~~~aapv~~~I~~~~~~~~~ 593 (599)
T COG0768 574 GAVAAPVFKKIMERLLDYLN 593 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHC
T ss_conf 35679999999999999734
No 23
>COG2027 DacB D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane]
Probab=96.67 E-value=0.0087 Score=36.46 Aligned_cols=44 Identities=34% Similarity=0.314 Sum_probs=38.7
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 78568999978962977643998307526989999999985135
Q gi|254780435|r 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 (336)
Q Consensus 27 ~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~ 70 (336)
..-+-.+.|.++|+++|+.|+++.+.|||+.||.|++.+++.+-
T Consensus 36 a~~~i~v~~~~~~~~~~~~~~~~~~~PASt~kl~T~~aal~~LG 79 (470)
T COG2027 36 AAVGITVQDLDTGQPAYDYNADTMANPASTQKLLTALAALSVLG 79 (470)
T ss_pred CEEEEEEEECCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 61578875468885111037655678851167889999998518
No 24
>TIGR02074 PBP_1a_fam penicillin-binding protein, 1A family; InterPro: IPR011816 Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (IPR011813 from INTERPRO). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages.; GO: 0008233 peptidase activity, 0016763 transferase activity transferring pentosyl groups, 0009252 peptidoglycan biosynthetic process, 0046677 response to antibiotic.
Probab=96.56 E-value=0.013 Score=35.45 Aligned_cols=136 Identities=16% Similarity=0.133 Sum_probs=89.3
Q ss_pred CCE-EEEEECCCCEEEE-------EEC--------CCCCCCCHHHHHHHHHHHHHHHCCCC-CCCCCCEEEECHHHHHC-
Q ss_conf 856-8999978962977-------643--------99830752698999999998513577-77876603517877200-
Q gi|254780435|r 28 LPY-YTLLDTNTGHVIA-------ENY--------PDHPWNPASLTKLMTAYVVFSFLKEK-KAMLTTPITISKNASEY- 89 (336)
Q Consensus 28 a~~-~i~~d~~tG~iL~-------~kn--------~~~~~~~AS~tKlmTa~~~~~~i~~g-~~~ld~~v~vs~~~~~~- 89 (336)
..+ .++||.+||.|.. .+| -.-++-|+|+.|-++.|.+ +|+.| +.+.++++.-.+.....
T Consensus 367 ~q~A~V~~D~~TG~v~A~VGG~dy~~~v~~~fNRAT~a~RQPGStfKPf~VY~~--Ale~G~~~~~~~~~~D~P~~~~~~ 444 (700)
T TIGR02074 367 LQAALVAIDPKTGAVRALVGGRDYGENVSSQFNRATQAKRQPGSTFKPFAVYAA--ALEKGLKYTPASILDDEPITYSGD 444 (700)
T ss_pred CCEEEEEEECCCCEEEEEECCEECCCCCCCCCCHHEECCCCCCCHHHHHHHHHH--HHHHHCCCCCCCEEEECCEEECCC
T ss_conf 250068984589768998746123777644642010002686512657999999--998504347010333033453588
Q ss_pred ---CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEE-----C--CCCCC
Q ss_conf ---3664434510123467776767774235899999764011178999999999987098353441-----2--35764
Q gi|254780435|r 90 ---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM-----N--AHGVV 159 (336)
Q Consensus 90 ---~~s~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~-----n--~~Gl~ 159 (336)
++.-.|=--|..|.=.=.|+-.|..|-|-.|+-|+..||. .+...+.++++|++.-.-. . |-.|
T Consensus 445 ~~~G~~w~P~Ny~g~y~G~vtl~~ALa~S~N~pAv~l~~~vG~-----~~~~~~~~~~~Gi~~~~~~E~T~~~~~s~AL- 518 (700)
T TIGR02074 445 PGNGGGWEPKNYGGKYRGNVTLRQALAQSINIPAVKLLDEVGF-----LDKVVALAKRFGITSPELPEKTLDPVLSLAL- 518 (700)
T ss_pred CCCCCCCCEECCCCCEEECCCHHHHHHHCCCHHHHHHHHHHCC-----HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE-
T ss_conf 8988950300068814613329999751223899999987078-----2799999997088787666658887565010-
Q ss_pred CCCCC----CCHHHHHH
Q ss_conf 62222----56999999
Q gi|254780435|r 160 QHGHY----TTARDMAI 172 (336)
Q Consensus 160 ~~~~~----tTa~Dla~ 172 (336)
...- +|+-+||.
T Consensus 519 -G~~e~~~Gv~pl~~A~ 534 (700)
T TIGR02074 519 -GTVESRKGVSPLEMAS 534 (700)
T ss_pred -CCCCCCCCCCHHHHHH
T ss_conf -6654344756899998
No 25
>COG0744 MrcB Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]
Probab=96.21 E-value=0.095 Score=30.14 Aligned_cols=141 Identities=22% Similarity=0.257 Sum_probs=89.1
Q ss_pred EEEEEECCCCEEEEEEC------------CCCCCCCHHHHHHHHHHHHHHHCC--CCCCCCCCEEEECHHHHHCCCCCCC
Q ss_conf 68999978962977643------------998307526989999999985135--7777876603517877200366443
Q gi|254780435|r 30 YYTLLDTNTGHVIAENY------------PDHPWNPASLTKLMTAYVVFSFLK--EKKAMLTTPITISKNASEYPPSNST 95 (336)
Q Consensus 30 ~~i~~d~~tG~iL~~kn------------~~~~~~~AS~tKlmTa~~~~~~i~--~g~~~ld~~v~vs~~~~~~~~s~~~ 95 (336)
+.+++|..||.|..=-. ...++.|+|+.|..+.|.++++-. -..+-.|.++++.. ....+..
T Consensus 329 a~v~~d~~tG~V~A~VGg~d~~~~~fNrAt~a~Rq~GSt~KP~~~~~a~~~~~~~~~~~~~d~p~~~~~----~~p~N~~ 404 (661)
T COG0744 329 ALVLIDPKTGAVRALVGGRDYQPSGFNRATQAKRQPGSTFKPFLYYAALEEGKATPSTIVVDAPVTYGN----WSPKNYD 404 (661)
T ss_pred EEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCEECCC----CCCEECC
T ss_conf 799996689858999768889866533000036788525889999999973899977445268722378----8874667
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 45-10123467776767774235899999764011178999999999987098353441235764622225699999998
Q gi|254780435|r 96 FK-KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 (336)
Q Consensus 96 l~-~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~ 174 (336)
-+ .|..+|+.|.| ..|-|-.|+-|+..+| .+..-+.++.+|+. ..+....++.....-+|+.+|+-.-
T Consensus 405 ~~y~~g~vtl~~AL----a~S~Nipav~l~~~vG------~~~~~~~~~~lGi~-~~~~~~~s~~lg~~~~sp~~ma~aY 473 (661)
T COG0744 405 GRYEGGSVTLREAL----ATSLNIPAVRLLQKVG------LDKVVDTAKKLGIN-SPLVPGPSLALGASEVSPLEMASAY 473 (661)
T ss_pred CCCCCCEECHHHHH----HCCCCHHHHHHHHHHC------HHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 86568526199998----7199999999999867------48999999982998-8888865222688889899999989
Q ss_pred HHHHHHHHHHHC
Q ss_conf 987631233110
Q gi|254780435|r 175 WRIKTDFPQYMH 186 (336)
Q Consensus 175 ~~~~~~~p~~~~ 186 (336)
.. +.+...+.+
T Consensus 474 ~~-fangG~~~~ 484 (661)
T COG0744 474 AT-FANGGTYYP 484 (661)
T ss_pred HH-HHHCCEECC
T ss_conf 99-960983358
No 26
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; InterPro: IPR000667 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This family of serine peptidases belong to MEROPS peptidase family S13 (D-Ala-D-Ala carboxypeptidase C, clan SE). The predicted active site residues for members of this family and family S12 occur in the motif SXXK. D-Ala-D-Ala carboxypeptidase C is involved in the metabolism of cell components ; it is synthesised with a leader peptide to target it to the cell membrane . After cleavage of the leader peptide, the enzyme is retained in the membrane by a C-terminal anchor . There are three families of serine-type D-Ala-D-Ala peptidase (designated S11, S12 and S13), which are also known as low molecular weight penicillin-binding proteins . Family S13 comprises D-Ala-D-Ala peptidases that have sufficient sequence similarity around their active sites to assume a distant evolutionary relationship to other clan members; members of the S13 family also bind penicillin and have D-amino-peptidase activity. Proteases of family S11 have exclusive D-Ala-D-Ala peptidase activity, while some members of S12 are C beta-lactamases . ; GO: 0004185 serine carboxypeptidase activity, 0006508 proteolysis.
Probab=96.00 E-value=0.0057 Score=37.60 Aligned_cols=43 Identities=30% Similarity=0.243 Sum_probs=34.4
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE
Q ss_conf 96297764399830752698999999998513577778766035
Q gi|254780435|r 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81 (336)
Q Consensus 38 tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~ 81 (336)
+|++||+.+.|..+-|||.-||+||..++-.+.. +.+.++.|.
T Consensus 1 ~~q~~~~y~~d~~~~PASt~K~lTAaAAL~~Lg~-~frFtT~v~ 43 (427)
T TIGR00666 1 TGQPLYQYSGDTFMLPASTQKLLTAAAALLELGP-NFRFTTEVV 43 (427)
T ss_pred CCCEEEECCCCEEECCCCCHHHHHHHHHHHHCCC-CCEEEEEEE
T ss_conf 9843343068855203246278999999974393-751799997
No 27
>TIGR02071 PBP_1b penicillin-binding protein 1B; InterPro: IPR011813 Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in Escherichia coli and other Proteobacteria, designated penicillin-binding protein 1B.; GO: 0008233 peptidase activity, 0008955 peptidoglycan glycosyltransferase activity, 0009252 peptidoglycan biosynthetic process, 0046677 response to antibiotic, 0009274 peptidoglycan-based cell wall.
Probab=95.91 E-value=0.055 Score=31.58 Aligned_cols=234 Identities=18% Similarity=0.074 Sum_probs=145.2
Q ss_pred EEEEEECCCCEEEE------------EECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCC
Q ss_conf 68999978962977------------643998307526989999999985135777787660351787720036644345
Q gi|254780435|r 30 YYTLLDTNTGHVIA------------ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97 (336)
Q Consensus 30 ~~i~~d~~tG~iL~------------~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~ 97 (336)
+.||+|..||+|.+ .+=.+.+++++|+.|=.|=+.+|..=+ +-+|++-|.=.+-+.....+.++=.
T Consensus 415 Amvv~D~~~GEvrA~vGg~~p~f~GFNRAl~A~R~iGSL~KP~vYLtALs~P~--~Y~LnTw~~d~P~~ik~~~G~~W~P 492 (742)
T TIGR02071 415 AMVVVDRFTGEVRALVGGRDPQFAGFNRALQARRQIGSLVKPAVYLTALSQPD--KYRLNTWIEDQPLSIKLSNGQVWSP 492 (742)
T ss_pred EEEEEECCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHCCCC--CCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 78898368870788875878875601036416377643243689999727897--3114664236644775688872465
Q ss_pred C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEE-ECCCCCCCCCC-CCCHHHHHHH
Q ss_conf 1--012346777676777423589999976401117899999999998709835344-12357646222-2569999999
Q gi|254780435|r 98 K--GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF-MNAHGVVQHGH-YTTARDMAIL 173 (336)
Q Consensus 98 ~--g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f-~n~~Gl~~~~~-~tTa~Dla~l 173 (336)
. ..+++=+=.|.-.|+.|=|=+++.|.-.|| ++..-+....||..+..+ ..|+=| -|- --|++|+|.+
T Consensus 493 ~N~D~~~~g~V~L~dALa~S~N~pTV~lGm~vG------l~~V~~t~~~LG~~k~~i~~~Psml--LGA~~ltP~evaq~ 564 (742)
T TIGR02071 493 RNYDRRYSGTVMLYDALARSLNIPTVNLGMKVG------LDKVSQTLKKLGINKDEIPPVPSML--LGAISLTPYEVAQL 564 (742)
T ss_pred CCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHCCCCCCCCCCCHHH--HCCCCCCHHHHHHH
T ss_conf 147742256264678987653176788646317------6789999998287712047663355--21136687899989
Q ss_pred HHHHHH---HHH--------------------HHHCCCCEEEC-------CCCCEEEEECCCCCC-CCC--CEEEEEEEC
Q ss_conf 898763---123--------------------31101230200-------017447860145656-689--711533212
Q gi|254780435|r 174 SWRIKT---DFP--------------------QYMHYFQIKGL-------EIKGKKYPNTNWAVG-TFL--GADGMKTGF 220 (336)
Q Consensus 174 ~~~~~~---~~p--------------------~~~~~~~~~~~-------~~~~~~~~N~N~ll~-~~~--gv~G~KTG~ 220 (336)
=+-+.. +.| +..+.....++ ..+.....=|-+-|. .|+ -...+|||+
T Consensus 565 YQtlAsgG~~~pL~avRSVl~~dG~vLy~~~~~~~~~~p~~svAaylt~~AMQqvV~~GTaRsL~~~~~~~l~LAGKTGT 644 (742)
T TIGR02071 565 YQTLASGGERAPLSAVRSVLDEDGKVLYQSLPQAEQAVPSQSVAAYLTLYAMQQVVQRGTARSLGADFPSSLSLAGKTGT 644 (742)
T ss_pred HHHHHCCCCCCCCHHHHHEECCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCC
T ss_conf 97762577554310220101147763301788745457742035776777877542012011001004666565456365
Q ss_pred CHHHHHEEEEEEEECCEEEEEEEECCCCHH-HH---HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 411200023456428868999983789866-78---99999999999851453202345
Q gi|254780435|r 221 TCASGFNIVASAIQGDQSLIAVILGALDRN-TR---NKVSASLLSMGFYNKTDRKKINY 275 (336)
Q Consensus 221 t~~AG~~lv~~a~~~g~~li~Vvlg~~~~~-~r---~~~~~~Ll~~~f~~f~~~~~~~~ 275 (336)
|++..=+= .+=.||+.+.+|=+|-++.. ++ ..=+.++..-.|++....++...
T Consensus 645 tNd~RDsW--F~G~dG~~~~~~W~GRD~N~~TkLtGAsGAl~vy~~yL~~~~P~~L~l~ 701 (742)
T TIGR02071 645 TNDSRDSW--FVGIDGKEVTIVWLGRDDNGPTKLTGASGALQVYKRYLKYQTPEPLLLV 701 (742)
T ss_pred CCCCCCEE--EEEECCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 68885104--7764387899999852789884764531589999999852588742336
No 28
>PRK11636 mrcA peptidoglycan synthetase; Provisional
Probab=95.30 E-value=0.22 Score=27.89 Aligned_cols=131 Identities=13% Similarity=0.047 Sum_probs=75.3
Q ss_pred EEEEEECCCCEEEEEECC------------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHH-HHCC-C----
Q ss_conf 689999789629776439------------983075269899999999851357777876603517877-2003-6----
Q gi|254780435|r 30 YYTLLDTNTGHVIAENYP------------DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SEYP-P---- 91 (336)
Q Consensus 30 ~~i~~d~~tG~iL~~kn~------------~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~-~~~~-~---- 91 (336)
+.++||..||.|+.=-.. +.++.|+|..|-..-..++| +| +++.+.+.-++-. ...+ +
T Consensus 428 AlV~iDp~tG~V~A~vGG~d~~~s~fNrA~qa~RQpGStfKPfvYaaAle---~G-~t~~t~v~D~Pi~~~~~~~g~~w~ 503 (850)
T PRK11636 428 ALVSINPQNGAVMALVGGFDFNQSKFNRATQALRQVGSNIKPFLYTAAMD---KG-LTLASMLNDVPISRWDAGAGSDWR 503 (850)
T ss_pred EEEEEECCCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHH---CC-CCCCCEECCCCCEEECCCCCCCCC
T ss_conf 17986067783467516756421132254434447886517899999997---49-996445058771230278888667
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHH
Q ss_conf -6443451012346777676777423589999976401117899999999998709835344123576462222569999
Q gi|254780435|r 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170 (336)
Q Consensus 92 -s~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dl 170 (336)
.+..-+-.-.+|+++ .|..|-|-.|+-+++.+| ++..-+.++.+|+........-.|.=...-.|+-+|
T Consensus 504 P~N~~~~~~G~vtlr~----AL~~S~N~~aVrl~~~vG------~~~~~~~~~~~Gi~~~~~~~~~slaLGs~~vtplem 573 (850)
T PRK11636 504 PKNSPPQYAGPIRLRQ----GLGQSKNVVMVRAMRAMG------VDYAAEYLQRFGFPAQNIVHTESLALGSASFTPMQV 573 (850)
T ss_pred CCCCCCCCCCHHHHHH----HHHHCCCHHHHHHHHHHC------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 0079988388699999----998484799999999869------699999999849985566766320257677679999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780435|r 171 AILS 174 (336)
Q Consensus 171 a~l~ 174 (336)
+---
T Consensus 574 a~AY 577 (850)
T PRK11636 574 ARGY 577 (850)
T ss_pred HHHH
T ss_conf 9999
No 29
>COG2602 Beta-lactamase class D [Defense mechanisms]
Probab=94.57 E-value=0.35 Score=26.68 Aligned_cols=204 Identities=15% Similarity=0.111 Sum_probs=117.0
Q ss_pred EEEEEEC-CCCEEEE-EECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 6899997-8962977-6439983075269899999999851357777876603517877200366443451012346777
Q gi|254780435|r 30 YYTLLDT-NTGHVIA-ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107 (336)
Q Consensus 30 ~~i~~d~-~tG~iL~-~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~~~s~~~l~~g~~~tv~dl 107 (336)
+.+++|. .++.++| +..+++++.|||+-|+.-+|..++ .|-++-++...-. .++-.-.+ +..-..+=
T Consensus 31 tfvlyd~~~~~~~i~n~~~~~qr~sPaSTfKI~~sLigld---~Gvl~d~~~~v~~-----wd~~~~~f---~~W~qd~d 99 (254)
T COG2602 31 TFVLYDDKAMGYSIYNEERAKQRFSPASTFKIALSLIGLD---AGVLSDEDTPVLL-----WDGKIRWF---ESWNQDQD 99 (254)
T ss_pred EEEEEECCCCCEEEECHHHHCCCCCCHHHHHHHHHHHHCC---CCCCCCCCCEEEE-----ECCCCCCC---HHHCCCCC
T ss_conf 4999975456324633355368668468999999974114---5731358765551-----07775634---11215588
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC-CCCCCCCHHHHHHHHHHHHHHH-HHHH
Q ss_conf 6767774235899999764011178999999999987098353441235764-6222256999999989876312-3311
Q gi|254780435|r 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDF-PQYM 185 (336)
Q Consensus 108 l~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~-~~~~~tTa~Dla~l~~~~~~~~-p~~~ 185 (336)
+.-.|..|.+-.-..+|.++| .+.|-++.+.||.-|-.....-|.= +.--.-||.+-..+.+.+..+. |.-.
T Consensus 100 l~~amk~Svvwy~q~iar~ig------~ek~~aylk~l~YGN~dis~~~~~Wl~~sLkIS~~EQv~fL~rL~~~~LPFs~ 173 (254)
T COG2602 100 LTSAMKNSVVWYYQEIARAIG------REKMAAYLKQLGYGNQDISGNPGFWLESSLKISPKEQVIFLRRLAQNELPFSA 173 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHCCCCHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCH
T ss_conf 899999987889999999876------89999998875226311058998111366522779999999999746699887
Q ss_pred CCCCEEECCCCCEEEEECCCCCCC-CCCEEEEEEECCHHHH---HEEEEEEEECCEEEEEEEECC----CCHHHHHHHHH
Q ss_conf 012302000174478601456566-8971153321241120---002345642886899998378----98667899999
Q gi|254780435|r 186 HYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASG---FNIVASAIQGDQSLIAVILGA----LDRNTRNKVSA 257 (336)
Q Consensus 186 ~~~~~~~~~~~~~~~~N~N~ll~~-~~gv~G~KTG~t~~AG---~~lv~~a~~~g~~li~Vvlg~----~~~~~r~~~~~ 257 (336)
+-... ...... +.+ ..+..-+|||+..... .=+|+.+++++..+..+.+=. ++...|-.-+.
T Consensus 174 ~a~~~----v~~~m~------~~~~~~~~l~GKTG~~~~~~~~~GWfVG~v~~~~~~y~FA~nld~~~~~d~~k~~~i~~ 243 (254)
T COG2602 174 KAQDL----VKAIMI------LERGPNWELHGKTGTGIVNTKNLGWFVGWVETNENKYVFATNLDIDGNEDGPKREEITE 243 (254)
T ss_pred HHHHH----HHHHHH------HHCCCCEEEEECCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 89999----987770------13089769984044465378875059999996893799999612577775467788999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780435|r 258 SLL 260 (336)
Q Consensus 258 ~Ll 260 (336)
+.|
T Consensus 244 ~~L 246 (254)
T COG2602 244 AIL 246 (254)
T ss_pred HHH
T ss_conf 999
No 30
>TIGR02214 spoVD_pbp stage V sporulation protein D; InterPro: IPR011927 This entry describes the SpoVD family of homologs of the cell division protein FtsI, a penicillin binding protein. This family is restricted to Bacillus subtilis and related Gram-positive species with known or suspected endospore formation capability. In these species, the functional equivalent of FtsI is desginated PBP-2B, a paralog of SpoVD..
Probab=91.74 E-value=0.98 Score=23.95 Aligned_cols=220 Identities=17% Similarity=0.192 Sum_probs=123.4
Q ss_pred CCEEEEEECCCCEEEEEEC---------------------------------CCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8568999978962977643---------------------------------9983075269899999999851357777
Q gi|254780435|r 28 LPYYTLLDTNTGHVIAENY---------------------------------PDHPWNPASLTKLMTAYVVFSFLKEKKA 74 (336)
Q Consensus 28 a~~~i~~d~~tG~iL~~kn---------------------------------~~~~~~~AS~tKlmTa~~~~~~i~~g~~ 74 (336)
+-+.|+||.++|+||-=-| ....+.|+|+-|+.|+-.++++ |-.
T Consensus 248 g~~i~vMnpknGeILGM~nrP~ydpn~p~~~s~~~~~kdesa~LQ~~WRN~~v~d~yEPGS~FKiiT~~AA~~e---g~v 324 (660)
T TIGR02214 248 GVSIIVMNPKNGEILGMSNRPSYDPNDPRDKSPEVKRKDESAKLQKSWRNRVVSDAYEPGSIFKIITSSAAMEE---GIV 324 (660)
T ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHCCCCHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHC---CCE
T ss_conf 58999976999717652067887877743037436054203688650188501122169847799999999732---740
Q ss_pred CCC-C------EEEECHH---HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 876-6------0351787---72003664434510123467776767774235899999764011178999999999987
Q gi|254780435|r 75 MLT-T------PITISKN---ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144 (336)
Q Consensus 75 ~ld-~------~v~vs~~---~~~~~~s~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~ 144 (336)
.|+ | .++|... -|+.+|- | +=|. .-.+=.|+|-+=.-|.+.+| ++.+|++.+.
T Consensus 325 ~le~d~FYd~G~~~vg~~~~kCWK~~GH------G-~qtF----~~vv~NSCN~GF~elG~~LG------~~~L~~Yi~~ 387 (660)
T TIGR02214 325 KLEKDKFYDDGSATVGGKKIKCWKPGGH------G-SQTF----LEVVQNSCNVGFIELGERLG------AEKLNEYIKK 387 (660)
T ss_pred ECCCCEEECCCEEEECCCEEEEECCCCC------C-CCCH----HHHHHCCCCHHHHHHHHHCC------HHHHHHHHHH
T ss_conf 0036501078414434826676768869------5-5464----78753277778998855407------6689999984
Q ss_pred CCCCCCEEECCCCCCCC---------CCCCCHHHHHHHHHH---------------HHHH-----HHHHHCCCCEEECCC
Q ss_conf 09835344123576462---------222569999999898---------------7631-----233110123020001
Q gi|254780435|r 145 LGLSATHFMNAHGVVQH---------GHYTTARDMAILSWR---------------IKTD-----FPQYMHYFQIKGLEI 195 (336)
Q Consensus 145 lG~~~T~f~n~~Gl~~~---------~~~tTa~Dla~l~~~---------------~~~~-----~p~~~~~~~~~~~~~ 195 (336)
-| |-.++|.+=+ -+.-.|=|||.++.= .+-| .|.+.+-.....-+.
T Consensus 388 FG-----FG~~tGIdL~GEA~GIl~n~~~v~pvdlAT~SfGQ~n~v~~iQ~~~A~~AvaNGG~L~~P~i~~e~~d~~~NG 462 (660)
T TIGR02214 388 FG-----FGSKTGIDLPGEAAGILKNLEKVGPVDLATISFGQANTVTPIQLMTAVNAVANGGKLIQPHIMKEISDKENNG 462 (660)
T ss_pred CC-----CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCC
T ss_conf 28-----9876886667741033413765561225433105200047789999999875166566133122021757895
Q ss_pred CCE---EE--EECCCC------------C--------CC---CCC-EEEEEEECC----HHHH-H-------EEEEEEEE
Q ss_conf 744---78--601456------------5--------66---897-115332124----1120-0-------02345642
Q gi|254780435|r 196 KGK---KY--PNTNWA------------V--------GT---FLG-ADGMKTGFT----CASG-F-------NIVASAIQ 234 (336)
Q Consensus 196 ~~~---~~--~N~N~l------------l--------~~---~~g-v~G~KTG~t----~~AG-~-------~lv~~a~~ 234 (336)
... ++ .+.-+. | ++ .+| -.|+|||+- ++.| | +||+.|=-
T Consensus 463 ~~~v~~~f~P~~~~~vv~~~~~~~l~~~LE~vVs~GsGk~AfIdGyrvGGKTGTAqKv~P~~G~Y~~g~YivSFvG~APa 542 (660)
T TIGR02214 463 RKVVDKKFEPEVKRKVVDKETTEKLRLALEKVVSKGSGKDAFIDGYRVGGKTGTAQKVKPEDGGYLEGEYIVSFVGFAPA 542 (660)
T ss_pred CEEEEEEECCCEEEEECCHHHHHHHHHHHHCEEECCCCCCCCCCCEEECCEECCCCCCCCCCCCCCCCCEEEEEEECCCC
T ss_conf 15887530770123532677899998864114514777561103469577304534447888934148668998642788
Q ss_pred CC-EEEEEEEECCCCHHHHHH------HHHHHHHHHHHHCCCCCC
Q ss_conf 88-689999837898667899------999999999851453202
Q gi|254780435|r 235 GD-QSLIAVILGALDRNTRNK------VSASLLSMGFYNKTDRKK 272 (336)
Q Consensus 235 ~g-~~li~Vvlg~~~~~~r~~------~~~~Ll~~~f~~f~~~~~ 272 (336)
++ .=-+.|+...|..-+.|- -.+++|+-.|+...-..-
T Consensus 543 ~dP~v~~~V~vD~P~~~~~FGG~vAAPv~~~v~~d~l~~lGi~P~ 587 (660)
T TIGR02214 543 DDPEVAVLVVVDNPKGVEQFGGLVAAPVVGEVFNDILNYLGIKPR 587 (660)
T ss_pred CCCCEEEEEEEECCCCCCCCCCEEECHHHHHHHHHHHHHCCCCCC
T ss_conf 988479999986798972013448741468899988875576898
No 31
>PRK11240 penicillin-binding protein 1C; Provisional
Probab=91.14 E-value=1.1 Score=23.58 Aligned_cols=137 Identities=19% Similarity=0.146 Sum_probs=81.6
Q ss_pred CCEEEEEECCCCEEEEEECC---------------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHH-HHCCC
Q ss_conf 85689999789629776439---------------983075269899999999851357777876603517877-20036
Q gi|254780435|r 28 LPYYTLLDTNTGHVIAENYP---------------DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SEYPP 91 (336)
Q Consensus 28 a~~~i~~d~~tG~iL~~kn~---------------~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~-~~~~~ 91 (336)
.-+++++|..||+|+.--.. ..++.|+|+-|-..-..+| ++|.+..++.+.-.+.. .....
T Consensus 300 ~~A~vviD~~tg~V~A~VG~~d~~~~~~~g~vd~~~A~RqPGStlKPfvYa~Al---e~G~i~p~s~l~D~P~~~g~y~P 376 (770)
T PRK11240 300 SLAMIVVDHTDMAVRGWVGSVDLNDDSRFGHVDMVNAIRSPGSVLKPFVYGLAL---DDGLIHPASLLQDVPRRTGDYRP 376 (770)
T ss_pred CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH---HCCCCCCCCEECCCCCCCCCCCC
T ss_conf 635999978998089998376667544467633020356896238899999999---76999988784168701488687
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEC--CCCCC--CCCCCCCH
Q ss_conf 644345101234677767677742358999997640111789999999999870983534412--35764--62222569
Q gi|254780435|r 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN--AHGVV--QHGHYTTA 167 (336)
Q Consensus 92 s~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n--~~Gl~--~~~~~tTa 167 (336)
.+..-.-.-.+|++++| ..|-|-.|+-|.+.+| .+.|+ +.++.+|+. +.+.. -.||. =.+--+|.
T Consensus 377 ~Nfd~~~~G~vt~r~AL----~~SlNipAV~ll~~~G--~~~~~----~~l~~~Gi~-~~l~~~~~~~LslaLGg~evtl 445 (770)
T PRK11240 377 GNFDSGFHGPVSMSEAL----VRSLNLPAVQVLEAYG--PKRFA----AKLRNVGLP-LYLPAGAAPNLSLILGGAGARL 445 (770)
T ss_pred CCCCCCCCCEEEHHHHH----HHCCCHHHHHHHHHHC--HHHHH----HHHHHCCCC-CCCCCCCCCCCCEECCCCCCCH
T ss_conf 02788720611099999----8654799999999879--69999----999973997-5678777898533315768889
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999989876
Q gi|254780435|r 168 RDMAILSWRIK 178 (336)
Q Consensus 168 ~Dla~l~~~~~ 178 (336)
.||+..-..+.
T Consensus 446 ~eLa~aYa~~A 456 (770)
T PRK11240 446 EDMAAAYSAFA 456 (770)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999997
No 32
>COG2066 GlsA Glutaminase [Amino acid transport and metabolism]
Probab=66.55 E-value=8.7 Score=18.19 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=33.9
Q ss_pred EEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 899997896297764399830752698999999998513
Q gi|254780435|r 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 (336)
Q Consensus 31 ~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i 69 (336)
+|.+=...|++...-++|+++.+-|++|+.+..++++.+
T Consensus 42 giai~t~dG~~~~aGD~d~~FsiqSISKvf~l~lal~~~ 80 (309)
T COG2066 42 GIAIVTVDGQVYSAGDADERFSIQSISKVFTLALALEDI 80 (309)
T ss_pred EEEEEECCCEEEECCCCCCCEEEEEEHHHHHHHHHHHHH
T ss_conf 699992599599716767614432429999999999866
No 33
>PRK13697 cytochrome c6; Provisional
Probab=66.10 E-value=1.4 Score=22.99 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEC
Q ss_conf 9489999999999985003578754478568999978962977643
Q gi|254780435|r 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENY 46 (336)
Q Consensus 1 mk~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~d~~tG~iL~~kn 46 (336)
|||++.++++.+++..+++...+.+ -|...|+-+|..|
T Consensus 1 Mk~l~~~~l~~~~~~~~~~~~pA~A--------ad~~~G~~iF~~n 38 (111)
T PRK13697 1 MKKILKLVLLTLLLLTFAFTSPAFA--------ADAANGEQIFSAN 38 (111)
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHH--------HHHHHHHHHHHHH
T ss_conf 9789999999999999980355444--------1675317999853
No 34
>PRK08655 prephenate dehydrogenase; Provisional
Probab=61.44 E-value=11 Score=17.51 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=23.8
Q ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHCC
Q ss_conf 8999997640-1117899999999998709
Q gi|254780435|r 118 DIAVAIAESL-CKTEKKFVQHMNNTSKNLG 146 (336)
Q Consensus 118 daa~aLAe~i-~Gs~~~Fv~~MN~~a~~lG 146 (336)
.+|.-|++.+ .|+++.|++.|-+-|+.+|
T Consensus 243 ~~~~~l~~~v~~~d~e~F~~~m~~aa~~~g 272 (441)
T PRK08655 243 KECEELSELVRNGDEESFVEKMKEAAKHFG 272 (441)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 999999999865689999999999998634
No 35
>PRK00971 glutaminase; Provisional
Probab=57.63 E-value=14 Score=16.95 Aligned_cols=36 Identities=11% Similarity=0.289 Sum_probs=31.2
Q ss_pred EEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 9997896297764399830752698999999998513
Q gi|254780435|r 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 (336)
Q Consensus 33 ~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i 69 (336)
+.+.+ |++...-+.+.++++-|++|.+|..++++..
T Consensus 44 i~t~d-G~~~~~GD~~~~FsiQSisK~f~~~lal~~~ 79 (308)
T PRK00971 44 VCTLD-GEIYSAGDADERFSIQSISKVFSLTLALQHY 79 (308)
T ss_pred EEECC-CCEEECCCCCCCEEHHHHHHHHHHHHHHHHH
T ss_conf 99459-9889557878853289889999999999887
No 36
>pfam10566 Glyco_hydro_97 Glycoside hydrolase 97. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands.
Probab=55.50 E-value=15 Score=16.74 Aligned_cols=48 Identities=8% Similarity=0.015 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHH-HHHCCCC-CCCC---CCCEEEEEECCCCEEEEEECCC
Q ss_conf 948999999999998-5003578-7544---7856899997896297764399
Q gi|254780435|r 1 MRQFLVIIAMAMLSN-IFPFLSI-AETN---KLPYYTLLDTNTGHVIAENYPD 48 (336)
Q Consensus 1 mk~~~~~~~~~~~~~-~~~~~~~-~~~~---~a~~~i~~d~~tG~iL~~kn~~ 48 (336)
|||+++++++++++. .++..++ ...+ ..+--+-+..+.|+.-|+-.-+
T Consensus 1 mkk~~~~~~~~~~~~~~~~~~~~k~~~v~SPDG~l~v~v~~~~g~l~YsV~~~ 53 (643)
T pfam10566 1 MKKLTIILLAFLLLIGNLSLAARKNYQLTSPNGKLKVELTLEGNELVYQIQYQ 53 (643)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCCEEEEEEEEC
T ss_conf 95025789999999976567541623899989988999998899599999999
No 37
>pfam04960 Glutaminase Glutaminase. This family of enzymes deaminates glutamine to glutamate EC:3.5.1.2.
Probab=50.96 E-value=18 Score=16.29 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=31.5
Q ss_pred EEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 899997896297764399830752698999999998513
Q gi|254780435|r 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69 (336)
Q Consensus 31 ~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i 69 (336)
+|.+=...|++...-+.+.++++-|++|.+|..++++..
T Consensus 19 giai~t~dG~~~~~GD~~~~FsiqSisK~f~~~lal~~~ 57 (286)
T pfam04960 19 GIAVVTVDGQVHSAGDADEPFSLQSISKVFTLALALGDL 57 (286)
T ss_pred EEEEEECCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHH
T ss_conf 899990799689557889977359999999999999877
No 38
>pfam06089 Asparaginase_II L-asparaginase II. This family consists of several bacterial L-asparaginase II proteins. L-asparaginase (EC:3.5.1.1) catalyses the hydrolysis of L-asparagine to L-aspartate and ammonium. Rhizobium etli possesses two asparaginases: asparaginase I, which is thermostable and constitutive, and asparaginase II, which is thermolabile, induced by asparagine and repressed by the carbon source.
Probab=46.77 E-value=21 Score=15.89 Aligned_cols=126 Identities=13% Similarity=0.184 Sum_probs=66.9
Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE----ECHH------------HHH
Q ss_conf 447856899997896297764399830752698999999998513577778766035----1787------------720
Q gi|254780435|r 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT----ISKN------------ASE 88 (336)
Q Consensus 25 ~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~----vs~~------------~~~ 88 (336)
+..--+++++|.+-..+.+--|.+.+.+|=|-.|.+-++-+++.--..+..|++.-. .|.. ..+
T Consensus 12 S~H~g~~vv~d~~G~~~~~~Gd~~~~~~pRSa~Kp~QAl~~~~sGa~~~~~l~~~elAL~cASH~Ge~~H~~~v~~~L~k 91 (325)
T pfam06089 12 SVHRGHAVVVDADGRVLASAGDPEAPTFPRSAAKPFQALPLLESGAAEKYGLSDEELALACASHSGEDEHVERVRSILAK 91 (325)
T ss_pred EEEEEEEEEECCCCCEEEECCCCCCCEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 15889999992999989861799983413344369999999986840016999899999970675809999999999998
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 0366443451012346777676777423589999976401117899999999998709835344123
Q gi|254780435|r 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155 (336)
Q Consensus 89 ~~~s~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~ 155 (336)
.+-+.-.|+-|-.++..+--..-++.++... ..|....+|-...|.. .++.+|..-..|.+|
T Consensus 92 ~gl~~~~L~Cg~~~P~~~~~~~~~~~~g~~p-~~l~~NCSGKHagmLa----~c~~~g~~~~~Y~~~ 153 (325)
T pfam06089 92 AGLDEDDLRCGAHWPLDEEARRALIRAGGKP-SPLHNNCSGKHAGMLA----TCKHLGWPLEGYLDP 153 (325)
T ss_pred CCCCHHHHCCCCCCCCCHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHH----HHHHCCCCHHHCCCC
T ss_conf 5999789279888899989999999679996-7040476089999999----999859980120689
No 39
>TIGR02079 THD1 threonine dehydratase; InterPro: IPR011820 This entry represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases are described by IPR005787 from INTERPRO and IPR005789 from INTERPRO. The sequences described by this entry are exclusively found in species containing the rest of the isoleucine pathway and which are generally lacking in members of the other two clades of threonine dehydratases. The sequences associated with this entry are often cluster with other elements of the isoleucine pathway.; GO: 0004794 L-threonine ammonia-lyase activity, 0030170 pyridoxal phosphate binding, 0009097 isoleucine biosynthetic process.
Probab=45.41 E-value=16 Score=16.64 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=47.8
Q ss_pred CCEEEECHHHHHCCCCCCCC-----CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 66035178772003664434-----510123467776767-774235899999764011178999999999987098353
Q gi|254780435|r 77 TTPITISKNASEYPPSNSTF-----KKGSTMTLDNALKLL-IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150 (336)
Q Consensus 77 d~~v~vs~~~~~~~~s~~~l-----~~g~~~tv~dll~~~-li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T 150 (336)
.++..-+...+..-+.+++| ++=.+|.+|=+.+.| ---|..+-+..+-=..+|++..=++ --++.||...|
T Consensus 16 ~TPL~~n~~LS~~Y~a~i~LKREDLq~VRSYKiRGAyN~lr~~lS~~~l~~GvVCASAGNHAQGfA---YaC~~lgv~G~ 92 (415)
T TIGR02079 16 HTPLQKNERLSEKYGANIYLKREDLQEVRSYKIRGAYNKLRKQLSDEQLAKGVVCASAGNHAQGFA---YACRKLGVHGR 92 (415)
T ss_pred CCCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHH---HHHCCCCCCEE
T ss_conf 987870135557768616775103673310467779999999974644208247515666124689---98504874407
Q ss_pred EEE
Q ss_conf 441
Q gi|254780435|r 151 HFM 153 (336)
Q Consensus 151 ~f~ 153 (336)
-|+
T Consensus 93 vfm 95 (415)
T TIGR02079 93 VFM 95 (415)
T ss_pred EEE
T ss_conf 887
No 40
>PRK09934 putative fimbrial protein; Provisional
Probab=45.28 E-value=18 Score=16.23 Aligned_cols=21 Identities=19% Similarity=0.282 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCC
Q ss_conf 948999999999998500357
Q gi|254780435|r 1 MRQFLVIIAMAMLSNIFPFLS 21 (336)
Q Consensus 1 mk~~~~~~~~~~~~~~~~~~~ 21 (336)
|||+++.+++.+++...+..+
T Consensus 1 mkk~~l~~~~~l~~~~~~~aa 21 (171)
T PRK09934 1 MRRVFIAIFCGLLWSPLSQAA 21 (171)
T ss_pred CHHHHHHHHHHHHHHHHHHHC
T ss_conf 926899999999986344211
No 41
>PRK10780 periplasmic chaperone; Provisional
Probab=41.17 E-value=20 Score=16.04 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHHHHHC
Q ss_conf 9489999999999985003
Q gi|254780435|r 1 MRQFLVIIAMAMLSNIFPF 19 (336)
Q Consensus 1 mk~~~~~~~~~~~~~~~~~ 19 (336)
||||++.+++++++.+++.
T Consensus 1 mKk~l~~~~l~l~l~~~a~ 19 (161)
T PRK10780 1 MKKWLLAAGLGLALATSAQ 19 (161)
T ss_pred CHHHHHHHHHHHHHHHHHH
T ss_conf 9589999999998588887
No 42
>PRK12357 glutaminase; Reviewed
Probab=37.89 E-value=28 Score=15.05 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=32.5
Q ss_pred EEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 8999978962977643998307526989999999985135
Q gi|254780435|r 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 (336)
Q Consensus 31 ~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~ 70 (336)
+|.+=...|++.---+.+.++++-|++|++|..++++..-
T Consensus 49 giai~t~dG~~~~~GD~~~~FsiQSiSK~f~l~lal~~~G 88 (326)
T PRK12357 49 GICIVKPDGTMIKSGDWEVPFTLQSISKVISFIAACLSRG 88 (326)
T ss_pred EEEEECCCCCEEEECCCCCCEEEEEHHHHHHHHHHHHHHC
T ss_conf 8999907999897359899672102399999999999779
No 43
>TIGR01882 peptidase-T peptidase T; InterPro: IPR010161 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This entry represents metallopeptidases belonging to MEROPS peptidase family M20 (clan MH), subfamily M20B. They are tripeptide aminopeptidases commonly known as Peptidase T, which have a substrate preference for hydrophobic peptides.; GO: 0008270 zinc ion binding, 0016285 cytosol alanyl aminopeptidase activity, 0045148 tripeptide aminopeptidase activity, 0006518 peptide metabolic process, 0005737 cytoplasm.
Probab=37.39 E-value=29 Score=15.00 Aligned_cols=110 Identities=20% Similarity=0.286 Sum_probs=57.8
Q ss_pred HHHHHH-HHHHHHHHCCCCCCEEECCCCCC-----CC-----------CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEC
Q ss_conf 789999-99999987098353441235764-----62-----------22256999999989876312331101230200
Q gi|254780435|r 131 EKKFVQ-HMNNTSKNLGLSATHFMNAHGVV-----QH-----------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193 (336)
Q Consensus 131 ~~~Fv~-~MN~~a~~lG~~~T~f~n~~Gl~-----~~-----------~~~tTa~Dla~l~~~~~~~~p~~~~~~~~~~~ 193 (336)
+..|.+ +|-+-.++|||+|-|+...+|.- .. -|.=||.|-.- +=+ .|++.+-+-=++.
T Consensus 32 ~~~f~~n~~~~dlk~lGl~D~hy~e~nGyViatiPsNtdkdVp~iGfLAH~DTAtDFn~---enV--nPQI~enYDGes~ 106 (413)
T TIGR01882 32 EVEFAKNVLVEDLKELGLKDVHYDEKNGYVIATIPSNTDKDVPKIGFLAHVDTATDFNA---ENV--NPQILENYDGESV 106 (413)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCC---CCC--CCCEEECCCCCCE
T ss_conf 88654236789998708401100125871898547786666761201220110002256---787--7755203688504
Q ss_pred CCCCE---EEE-ECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHH-H
Q ss_conf 01744---786-0145656689711533212411200023456428868999983789866789999999999985-1
Q gi|254780435|r 194 EIKGK---KYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY-N 266 (336)
Q Consensus 194 ~~~~~---~~~-N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~~~~r~~~~~~Ll~~~f~-~ 266 (336)
-..+. ++. ..-+-|..|+| .+||.+ +| ...||+..+.. -.+.+.+.||-.+ +
T Consensus 107 i~lgd~eftLdP~~fPnL~~YKG-------------qTlitt---dG----tTLLG~d~K~G-iaEiMT~adYL~~ih 163 (413)
T TIGR01882 107 IQLGDLEFTLDPEDFPNLKKYKG-------------QTLITT---DG----TTLLGADDKAG-IAEIMTLADYLLNIH 163 (413)
T ss_pred EEECCEEEEECCCCCCCCCCCCC-------------CEEEEC---CC----CCCCCCCCCCC-HHHHHHHHHHHHHCC
T ss_conf 55065017627221764225887-------------678851---68----61116653342-889999999985048
No 44
>PRK00031 lolA outer-membrane lipoprotein carrier protein; Reviewed
Probab=36.96 E-value=26 Score=15.28 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCC
Q ss_conf 948999999999998500357
Q gi|254780435|r 1 MRQFLVIIAMAMLSNIFPFLS 21 (336)
Q Consensus 1 mk~~~~~~~~~~~~~~~~~~~ 21 (336)
|||+++++.+++.+.+++..+
T Consensus 1 mk~~~~~~~~~~~l~~~~~~A 21 (201)
T PRK00031 1 MKKLLIAALLAAALVASSAFA 21 (201)
T ss_pred CCHHHHHHHHHHHHHHHHHCC
T ss_conf 915999999999987766450
No 45
>PRK03629 tolB translocation protein TolB; Provisional
Probab=36.36 E-value=30 Score=14.90 Aligned_cols=17 Identities=18% Similarity=0.000 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 94899999999999850
Q gi|254780435|r 1 MRQFLVIIAMAMLSNIF 17 (336)
Q Consensus 1 mk~~~~~~~~~~~~~~~ 17 (336)
||+++.+++.++++...
T Consensus 1 mk~~~~~~f~~lll~~~ 17 (430)
T PRK03629 1 MKQALRVAFGFLILWAS 17 (430)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 90148889989998754
No 46
>KOG4038 consensus
Probab=36.34 E-value=25 Score=15.44 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=17.1
Q ss_pred EEEEECCCCEEEEEECCCCCCC
Q ss_conf 8999978962977643998307
Q gi|254780435|r 31 YTLLDTNTGHVIAENYPDHPWN 52 (336)
Q Consensus 31 ~i~~d~~tG~iL~~kn~~~~~~ 52 (336)
-.+-|++||+||++.+.|-..|
T Consensus 20 mnlrdaetgkilwq~ted~s~p 41 (150)
T KOG4038 20 MNLRDAETGKILWQETEDFSAP 41 (150)
T ss_pred EEEECCCCCCEEEECCCCCCCC
T ss_conf 6730254461654025555788
No 47
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM; InterPro: IPR012696 This family consists of proteins from in the PhnM family. PhnM is a protein associated with phosphonate utilization in a number of bacterial species. Pseudomonas stutzeri WM88, has a related protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound), which is not contained in this entry..
Probab=35.98 E-value=27 Score=15.22 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=26.4
Q ss_pred HHHHHHCCCCCCEEECCCCC---CCCCCCCCHHHHHHH
Q ss_conf 99998709835344123576---462222569999999
Q gi|254780435|r 139 NNTSKNLGLSATHFMNAHGV---VQHGHYTTARDMAIL 173 (336)
Q Consensus 139 N~~a~~lG~~~T~f~n~~Gl---~~~~~~tTa~Dla~l 173 (336)
-+.|+++|| ++=+--||.+ .+.|| .||.||+..
T Consensus 268 A~~Ar~~G~-~~lMGAPN~vRGgSHSGN-~sA~ela~~ 303 (391)
T TIGR02318 268 AKEARSLGM-QILMGAPNIVRGGSHSGN-VSARELAQE 303 (391)
T ss_pred HHHHHHCCC-EEEEECCCCEECCCCCHH-HHHHHHHHH
T ss_conf 999987698-089608852017750268-999999970
No 48
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=35.81 E-value=13 Score=17.04 Aligned_cols=62 Identities=19% Similarity=0.057 Sum_probs=43.7
Q ss_pred EEECCCCCCCCCCEEEEEEECCHHHHHEEEEEEEECCEE-EEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 860145656689711533212411200023456428868-9999837898667899999999999
Q gi|254780435|r 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263 (336)
Q Consensus 200 ~~N~N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~-li~Vvlg~~~~~~r~~~~~~Ll~~~ 263 (336)
+...|-|||.-.|+ | ||=-|..-..-|-..+++-|.+ +.+|-.+|...++.|+-...|.+..
T Consensus 41 ~~P~Ni~iYGkTGt-G-KT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~~T~y~~~~~L~~~l 103 (383)
T TIGR02928 41 SRPSNIFIYGKTGT-G-KTAVTKYVMKELEEAAEDRDVRDVSTVYINCQILDTSYQVLVELANQL 103 (383)
T ss_pred CCCCCEEEECCCCC-C-HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 89872588788898-7-889999999999998622699715899977854684699999999985
No 49
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=35.76 E-value=24 Score=15.46 Aligned_cols=19 Identities=11% Similarity=0.382 Sum_probs=10.6
Q ss_pred CHHHHHHHHHHHHHHHHHC
Q ss_conf 9489999999999985003
Q gi|254780435|r 1 MRQFLVIIAMAMLSNIFPF 19 (336)
Q Consensus 1 mk~~~~~~~~~~~~~~~~~ 19 (336)
||++++++++.++.+..+.
T Consensus 2 mk~l~~~~~~~l~~~~~a~ 20 (293)
T PRK13861 2 IKKLFLTLACLLFAAIGAL 20 (293)
T ss_pred CHHHHHHHHHHHHHHHHHH
T ss_conf 0899999999998612667
No 50
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component; InterPro: IPR014350 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) , is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , . According to structural and sequence analyses, the PTS EIIB domain (2.7.1.69 from EC) can be divided in five groups , , : The PTS EIIB type 1 domain, which is found in the Glucose class of PTS, has an average length of about 80 amino acids. It forms a split alpha/beta sandwich composed of an antiparallel sheet (beta 1 to beta 4) and three alpha helices superimposed onto one side of the sheet. The phosphorylation site (Cys) is located at the end of the first beta strand on a protrusion formed by the edge of beta 1 and the reverse turn between beta 1 and beta 2 . The PTS EIIB type 2 domain, which is found in the Mannitol class of PTS, has an average length of about 100 amino acids. It consists of a four stranded parallel beta sheet flanked by two alpha helices (alpha 1 and 3) on one face and helix alpha 2 on the opposite face, with a characteristic Rossmann fold comprising two right-handed beta-alpha-beta motifs. The phosphorylation site (Cys) is located at the N-terminus of the domain, in the first beta strand. The PTS EIIB type 3 domain, which is found in the Lactose class of PTS, has an average length of about 100 amino acids. It is composed of a central four-stranded parallel open twisted beta sheet, which is flanked by three alpha helices on the concave side and two on the convex side of the beta sheet. The phosphorylation site (Cys) is located in the C-terminal end of the first beta strand . The PTS EIIB type 4 domain, which is found in the Mannose class of PTS, has an average length of about 160 amino acids. It has a central core of seven parallel beta strands surrounded by a total of six alpha-helices. Three helices cover the front face, one the back face with the remaining two capping the central beta sheet at the top and bottom. The phosphorylation site (His) is located at the suface exposed loop between strand 1 and helix 1 . The PTS EIIB type 5 domain, which is found in the Sorbitol class of PTS, has an average length of about 190 amino acids. The phosphorylation site (Cys) is located in the N-terminus of the domain. The EIIB type 3 protein is often found downstream of EIIC type 3. This entry hits fewer proteins than IPR013012 from INTERPRO. .
Probab=34.48 E-value=32 Score=14.71 Aligned_cols=73 Identities=16% Similarity=0.148 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCC
Q ss_conf 11178999999999987098353441235764622225699999998987631233110123020001744786014565
Q gi|254780435|r 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207 (336)
Q Consensus 128 ~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll 207 (336)
|||..=-|.+||+.|++=|..=+-..-|.|. .....--.||.+|+==...++|++.+.+..+ |.++.-+|...
T Consensus 56 GmstsLLv~~l~k~A~~~~~~~~i~A~~~~~--~~e~~~~~d~VlLaPQ~~~~~~~lk~~t~~~-----Gip~~~i~~~~ 128 (142)
T TIGR00853 56 GMSTSLLVNKLNKAAKEYGVPVKIAAVSYGA--AMEILDDADVVLLAPQVAYMLPDLKKETDKK-----GIPVEVINGAQ 128 (142)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEECCCH--HHHHHHHHCEEEEHHHHHHHHHHHHHHCCCC-----CCCEEEECCCC
T ss_conf 7354789999999998459975888405763--4433535043112032675579999851358-----97536638700
No 51
>PRK12356 glutaminase; Reviewed
Probab=32.88 E-value=34 Score=14.55 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=31.2
Q ss_pred EEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 99978962977643998307526989999999985135
Q gi|254780435|r 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70 (336)
Q Consensus 33 ~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~ 70 (336)
+.+.+ |++..--+.+.++++-|++|.++..++++..-
T Consensus 48 i~t~d-G~~~~~GD~~~~FsiQSisK~f~~~lal~~~G 84 (319)
T PRK12356 48 VVTTD-GQVYSAGDSDYRFAIESISKVFTLALVLEDIG 84 (319)
T ss_pred EEECC-CCEEECCCCCCCEEHHHHHHHHHHHHHHHHHC
T ss_conf 99469-98885678898772277899999999998669
No 52
>pfam03971 IDH Monomeric isocitrate dehydrogenase. NADP(+)-dependent isocitrate dehydrogenase (ICD) is an important enzyme of the intermediary metabolism, as it controls the carbon flux within the citric acid cycle and supplies the cell with 2-oxoglutarate EC:1.1.1.42 and NADPH for biosynthetic purposes.
Probab=31.58 E-value=30 Score=14.93 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 117899999999998709835344123
Q gi|254780435|r 129 KTEKKFVQHMNNTSKNLGLSATHFMNA 155 (336)
Q Consensus 129 Gs~~~Fv~~MN~~a~~lG~~~T~f~n~ 155 (336)
|+..+ |-+|-+||+|-|-++++|.-|
T Consensus 401 GsV~N-VGLMAqKAEEYGSHdkTF~~~ 426 (735)
T pfam03971 401 GSVPN-VGLMAQKAEEYGSHDKTFEIQ 426 (735)
T ss_pred CCCCC-HHHHHHHHHHHCCCCCCEECC
T ss_conf 67774-278888789847898515558
No 53
>pfam09403 FadA Adhesion protein FadA. FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices.
Probab=31.35 E-value=30 Score=14.91 Aligned_cols=16 Identities=19% Similarity=0.247 Sum_probs=8.2
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 9489999999999985
Q gi|254780435|r 1 MRQFLVIIAMAMLSNI 16 (336)
Q Consensus 1 mk~~~~~~~~~~~~~~ 16 (336)
||||++++.+++....
T Consensus 1 MkK~ll~~~llls~~s 16 (126)
T pfam09403 1 MKKILLCSMLILSSLS 16 (126)
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 9169999999999999
No 54
>pfam06892 Phage_CP76 Phage regulatory protein CII (CP76). This family consists of several phage regulatory protein CII (CP76) sequences which are thought to be DNA binding proteins which are involved in the establishment of lysogeny.
Probab=28.67 E-value=40 Score=14.12 Aligned_cols=56 Identities=14% Similarity=0.303 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5899999764011178999999999987098353441235764622225699999998987631233
Q gi|254780435|r 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183 (336)
Q Consensus 117 Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~~~~~~~~p~ 183 (336)
++||.+.|.. ..|.+-|+++||.-....|-=- |+..|.-|+.|+..|+.. -.|+..
T Consensus 11 d~ACraFA~~---------hnl~~lA~~~Gm~~~~LRNkLN-P~qpH~Lt~~el~~it~~-t~d~tl 66 (163)
T pfam06892 11 DEACRAFADS---------HNLAELAERAGMNGQMLRNKLN-PEQPHQLTVPELVLITKA-TGDYTI 66 (163)
T ss_pred HHHHHHHHHH---------CCHHHHHHHCCCCHHHHHHCCC-CCCCCCCCHHHHHHHHHC-CCCHHH
T ss_conf 9999999988---------0199999980998899985249-889882789999999861-276579
No 55
>PRK03757 hypothetical protein; Provisional
Probab=27.66 E-value=42 Score=14.01 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=10.8
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 94899999999999850
Q gi|254780435|r 1 MRQFLVIIAMAMLSNIF 17 (336)
Q Consensus 1 mk~~~~~~~~~~~~~~~ 17 (336)
|||+++.++++.++...
T Consensus 1 mkk~~l~~~l~a~~~~~ 17 (191)
T PRK03757 1 MKKTLLGLTLGSLLFSA 17 (191)
T ss_pred CCHHHHHHHHHHHHHHC
T ss_conf 90439999999998630
No 56
>pfam05351 GMP_PDE_delta GMP-PDE, delta subunit. GMP-PDE delta subunit was originally identified as a fourth subunit of rod-specific cGMP phosphodiesterase (PDE)(EC:3.1.4.35). The precise function of PDE delta subunit in the rod specific GMP-PDE complex is unclear. In addition, PDE delta subunit is not confined to photoreceptor cells but is widely distributed in different tissues. PDE delta subunit is thought to be a specific soluble transport factor for certain prenylated proteins and Arl2-GTP a regulator of PDE-mediated transport.
Probab=26.19 E-value=44 Score=13.87 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=16.1
Q ss_pred CEEEEEECCCCEEEEEECCCC
Q ss_conf 568999978962977643998
Q gi|254780435|r 29 PYYTLLDTNTGHVIAENYPDH 49 (336)
Q Consensus 29 ~~~i~~d~~tG~iL~~kn~~~ 49 (336)
-.-.+=|++||+||++-..+.
T Consensus 12 ~~f~iRD~etG~vlfe~~~~~ 32 (156)
T pfam05351 12 TRFKIRDAETGKVLFEIAKDP 32 (156)
T ss_pred EEEEEEECCCCEEEEEECCCC
T ss_conf 899986177781899852797
No 57
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=26.06 E-value=45 Score=13.83 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=15.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 99983789866789999999999
Q gi|254780435|r 240 IAVILGALDRNTRNKVSASLLSM 262 (336)
Q Consensus 240 i~Vvlg~~~~~~r~~~~~~Ll~~ 262 (336)
++|+||+.|++..-+.+.+.|+.
T Consensus 1 V~iIMGS~SD~~~m~~a~~~L~~ 23 (159)
T TIGR01162 1 VGIIMGSDSDLETMKKAAEILEE 23 (159)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
T ss_conf 96853672547899999999985
No 58
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY; InterPro: IPR014154 This entry represents pleiotropic repressors in Bacillus subtilis, CodY, and other Firmicutes (low-GC Gram-positive bacteria) that respond to intracellular levels of GTP and branched chain amino acids. All have a C-terminal helix-turn-helix DNA-binding region..
Probab=25.88 E-value=17 Score=16.38 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 1789999999999870983534412357
Q gi|254780435|r 130 TEKKFVQHMNNTSKNLGLSATHFMNAHG 157 (336)
Q Consensus 130 s~~~Fv~~MN~~a~~lG~~~T~f~n~~G 157 (336)
.+=.|-+|-..-|.=++| |-...|..|
T Consensus 22 ~~l~fn~~a~~L~Dvi~~-N~yvis~kG 48 (255)
T TIGR02787 22 EELPFNEMAELLADVIDC-NAYVISRKG 48 (255)
T ss_pred CCCCHHHHHHHHHHHHHC-CEEEECCCC
T ss_conf 447768999998778458-856871657
No 59
>pfam01011 PQQ PQQ enzyme repeat. The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilize pyrrolo-quinoline quinone as a prosthetic group.
Probab=25.38 E-value=46 Score=13.76 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=18.5
Q ss_pred EEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 689999789629776439983075
Q gi|254780435|r 30 YYTLLDTNTGHVIAENYPDHPWNP 53 (336)
Q Consensus 30 ~~i~~d~~tG~iL~~kn~~~~~~~ 53 (336)
.-..+|++||+++++.+.......
T Consensus 11 ~l~AlD~~tGk~~W~~~~~~~~~~ 34 (38)
T pfam01011 11 RLYALDAKTGKVLWKFKTGGPDDS 34 (38)
T ss_pred EEEEEECCCCCEEEEEECCCCEEC
T ss_conf 699988778827899975996054
No 60
>PRK10449 heat-inducible protein; Provisional
Probab=24.92 E-value=47 Score=13.70 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCC----CCCCCCCCEEEEEECCCCEEE
Q ss_conf 948999999999998500357----875447856899997896297
Q gi|254780435|r 1 MRQFLVIIAMAMLSNIFPFLS----IAETNKLPYYTLLDTNTGHVI 42 (336)
Q Consensus 1 mk~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~i~~d~~tG~iL 42 (336)
|||++.++++.++++...... .+.......|++...+ |+-+
T Consensus 1 MKk~l~l~~~~llLagC~s~~~~~vs~~~Lq~h~wvL~svd-G~~v 45 (140)
T PRK10449 1 MKKVVALVALSLLMAGCVSSGKISVTPEQLQHHRFVLESVN-GKPV 45 (140)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCEEEEEEEC-CEEC
T ss_conf 90349999999999752389988769788378548999978-9536
No 61
>COG4800 Predicted transcriptional regulator with an HTH domain [Transcription]
Probab=24.47 E-value=48 Score=13.65 Aligned_cols=40 Identities=18% Similarity=0.349 Sum_probs=34.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 99999764011178999999999987098353441235764
Q gi|254780435|r 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159 (336)
Q Consensus 119 aa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~ 159 (336)
+++-|++.+. |.+.|.+-...-..||||+-..|.--+|.|
T Consensus 3 ~~~rl~~~ie-s~E~F~~~l~~~l~Elglt~~eFak~anIP 42 (170)
T COG4800 3 MIYRLAECIE-SGEDFGSCLQKLLDELGLTPSEFAKRANIP 42 (170)
T ss_pred HHHHHHHHHH-CHHHHHHHHHHHHHHCCCCHHHHHHHCCCC
T ss_conf 8999999996-400799999999998199989998870998
No 62
>PRK10869 recombination and repair protein; Provisional
Probab=24.38 E-value=48 Score=13.64 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=6.4
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 8307526989999999
Q gi|254780435|r 49 HPWNPASLTKLMTAYV 64 (336)
Q Consensus 49 ~~~~~AS~tKlmTa~~ 64 (336)
.+.+...+..+.--++
T Consensus 110 ~~vt~~~Lk~l~~~Li 125 (553)
T PRK10869 110 TPVPLSQLRELGQLLI 125 (553)
T ss_pred EECCHHHHHHHHHHHH
T ss_conf 9856999999999999
No 63
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=23.79 E-value=50 Score=13.57 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
Q ss_conf 948999999999998500357875447856899997
Q gi|254780435|r 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDT 36 (336)
Q Consensus 1 mk~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~d~ 36 (336)
|||++++++..+++. .+ .+++-..+..|.+++.
T Consensus 1 mkk~~~~~~~llls~-~a--~Aa~~~eG~~Y~~L~~ 33 (207)
T PRK10954 1 MKKIWLALAGMVLAF-SA--SAAQFTDGKQYTTLDK 33 (207)
T ss_pred CCHHHHHHHHHHHHH-HH--HHHHCCCCCCCEECCC
T ss_conf 915999999999997-72--2503548997558888
No 64
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=22.70 E-value=52 Score=13.44 Aligned_cols=127 Identities=14% Similarity=0.224 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHCCCCE------------EECCCCCEEE
Q ss_conf 99999999987098353441235764622225699999998987631-2331101230------------2000174478
Q gi|254780435|r 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD-FPQYMHYFQI------------KGLEIKGKKY 200 (336)
Q Consensus 134 Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~~~~~~~-~p~~~~~~~~------------~~~~~~~~~~ 200 (336)
+.+......++.|..-.+++=|.| +.+-|-.-+..+-..++.. ++.-.-+... ......|..+
T Consensus 48 y~~~~~~~l~~~g~~v~~~~lp~G----E~~Ksl~~~~~i~~~ll~~~~~R~s~iialGGGvigDlaGF~Aaty~RGv~f 123 (360)
T COG0337 48 YLEKLLATLEAAGVEVDSIVLPDG----EEYKSLETLEKIYDALLEAGLDRKSTLIALGGGVIGDLAGFAAATYMRGVRF 123 (360)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCC----CCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCE
T ss_conf 799999999855860579995798----4505599999999999975999886799978758777778999999708976
Q ss_pred EEC-CCCCCCCCCEEEEEEECCHHHHHEEEEEEEECCEEEEEE-EECCCCHHHHHHHHHHHHHHHH
Q ss_conf 601-456566897115332124112000234564288689999-8378986678999999999998
Q gi|254780435|r 201 PNT-NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV-ILGALDRNTRNKVSASLLSMGF 264 (336)
Q Consensus 201 ~N~-N~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~V-vlg~~~~~~r~~~~~~Ll~~~f 264 (336)
.+- --||...+...|+|||--...|.|+|++..+=..=++-. +|..-.....-.-+...+.|||
T Consensus 124 iqiPTTLLAqVDSSVGGKtgIN~~~gKNmIGaF~qP~aVi~D~~~L~TLp~re~~~G~AEvIK~g~ 189 (360)
T COG0337 124 IQIPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAVLIDTDFLKTLPPRELRAGMAEVIKYGL 189 (360)
T ss_pred EECCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 755632987762345643453788876226515698679980588641998899876999988764
No 65
>TIGR01357 aroB 3-dehydroquinate synthase; InterPro: IPR016037 The 3-dehydroquinate synthase (4.2.3.4 from EC) domain is present in isolation in various bacterial 3-dehydroquinate synthases and also present as a domain in the pentafunctional AROM polypeptide (P07547 from SWISSPROT) . 3-dehydroquinate (DHQ) synthase catalyses the formation of dehydroquinate (DHQ) and orthophosphate from 3-deoxy-D-arabino heptulosonic 7 phosphate . This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids.; GO: 0003856 3-dehydroquinate synthase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=22.47 E-value=24 Score=15.49 Aligned_cols=128 Identities=13% Similarity=0.190 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHCCCCE------------EECCCCCEE
Q ss_conf 99999999998709835344123576462222569999999898763-12331101230------------200017447
Q gi|254780435|r 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT-DFPQYMHYFQI------------KGLEIKGKK 199 (336)
Q Consensus 133 ~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~~~~~~-~~p~~~~~~~~------------~~~~~~~~~ 199 (336)
-|-+.+-+..+.+|..--.++=|.|= ..-+..+..++.. .++. ++|.-.-+... .++-.+|..
T Consensus 39 ~~~~~~~~~~~~~g~~v~~~~~p~GE-~~K~l~~~~~l~~---~L~~~~~~R~~~i~~~GGGvvgDlaGFvAaty~RGi~ 114 (361)
T TIGR01357 39 LYAEKLLEALQSAGFNVLVLTVPDGE-ESKSLETVQRLYD---QLLEAGLDRSSTIIALGGGVVGDLAGFVAATYMRGIR 114 (361)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCC-CCCCHHHHHHHHH---HHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf 88889999998538752688707898-7454888999999---9996588956478885453778789999999961558
Q ss_pred EEECC-CCCCCCCCEEEEEEECCHHHHHEEEEEEEECCEEEE-EEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 86014-565668971153321241120002345642886899-998378986678999999999998
Q gi|254780435|r 200 YPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI-AVILGALDRNTRNKVSASLLSMGF 264 (336)
Q Consensus 200 ~~N~N-~ll~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li-~Vvlg~~~~~~r~~~~~~Ll~~~f 264 (336)
+.+-- -||...|-..|+|||=--..|.|+|++..+=..=++ .-+|-.=.......=+-..+-|||
T Consensus 115 ~iqvPTTLLAmVDsSvGGKtGiN~~~gKNlIGaFy~P~~V~~D~~~L~TLP~~E~~~G~AEviK~g~ 181 (361)
T TIGR01357 115 FIQVPTTLLAMVDSSVGGKTGINFPLGKNLIGAFYQPKAVLIDPDFLKTLPERELRSGMAEVIKHGL 181 (361)
T ss_pred EEECCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEHHHHCCCCHHHHHCCCHHHHHHHH
T ss_conf 2641404777765303764111378886304211377402650144158846888644357788875
No 66
>PRK06763 F0F1 ATP synthase subunit alpha; Validated
Probab=20.81 E-value=57 Score=13.20 Aligned_cols=31 Identities=16% Similarity=0.037 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
Q ss_conf 9489999999999985003578754478568
Q gi|254780435|r 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY 31 (336)
Q Consensus 1 mk~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 31 (336)
|||++|.-++.+...+..-.+--+...|++|
T Consensus 3 MKKvILAgALGiAALaGTNlPGLE~tKASAA 33 (213)
T PRK06763 3 MKKVILAGALGIAALSGTNLPGLEITKASAA 33 (213)
T ss_pred CCEEEEECHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 5138881303335453488876200204455
No 67
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=20.10 E-value=19 Score=16.05 Aligned_cols=60 Identities=17% Similarity=0.182 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 11178999999999987098353441235764622225699999998987631233110123
Q gi|254780435|r 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189 (336)
Q Consensus 128 ~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~~~~~~~~p~~~~~~~ 189 (336)
|+|..-+++.|++.|++-|+.=.--.-+.|- ...+-.-+|+.+|+-.....+.++.+...
T Consensus 10 GmSSs~la~~m~k~A~~~gi~~~i~A~~~~~--~~d~~~~yDvilLaPQv~~~~~~lk~~ad 69 (99)
T cd05565 10 GGTSGLLANALNKGAKERGVPLEAAAGAYGS--HYDMIPDYDLVILAPQMASYYDELKKDTD 69 (99)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEEECHH--HHHHHHCCCEEEECHHHHHHHHHHHHHHH
T ss_conf 8858999999999999819976999510344--89887079999998508888999999999
Done!