HHsearch alignment for GI: 254780435 and conserved domain: pfam00768
>pfam00768 Peptidase_S11 D-alanyl-D-alanine carboxypeptidase.
Probab=100.00 E-value=0 Score=508.25 Aligned_cols=230 Identities=38% Similarity=0.501 Sum_probs=217.2
Q ss_pred CCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHH----CCCCCC
Q ss_conf 3578754478568999978962977643998307526989999999985135777787660351787720----036644
Q gi|254780435|r 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----YPPSNS 94 (336)
Q Consensus 19 ~~~~~~~~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~----~~~s~~ 94 (336)
T Consensus 3 ~~~~~P~i~A~saiv~D~~tg~iL~~kn~~~~~~pAS~TKlMTa~v~le~~~~~~~~~~~~v~is~~~~~~~~~~~~s~~ 82 (241)
T pfam00768 3 TTVSAPEIAAKSAILVDYNTGKVLYEKNADQVRPIASITKLMTAYVVLEALKAGKLKEDDPVTISEYAYALGNFRGSSNM 82 (241)
T ss_pred CCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHCCCCCCCEE
T ss_conf 77899856512999999999979000690998177899999999999997562898854442101889986378887346
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 34510123467776767774235899999764011178999999999987098353441235764622225699999998
Q gi|254780435|r 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174 (336)
Q Consensus 95 ~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~~~~~tTa~Dla~l~ 174 (336)
T Consensus 83 ~l~~G~~~tv~dLl~~lll~S~NdAA~aLA~~v~Gs~~~Fv~~MN~~A~~LGm~~T~F~np~GL~~~~~~sTA~Dla~l~ 162 (241)
T pfam00768 83 FLKPGDKVTVRDLLRGLLVSSGNDAAVALAEKIAGSEKAFVKMMNAKAKQLGLKNTRFVNPTGLDNHGQYSSARDLAILA 162 (241)
T ss_pred EECCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEECHHHHHHHH
T ss_conf 53489998899999999875645999999998458299999999999998199998666687777888666799999999
Q ss_pred HHHHHHHHHHHCCCCEEECCCCC----EEEEECCCCCCCCC-CEEEEEEECCHHHHHEEEEEEEECCEEEEEEEECCCC
Q ss_conf 98763123311012302000174----47860145656689-7115332124112000234564288689999837898
Q gi|254780435|r 175 WRIKTDFPQYMHYFQIKGLEIKG----KKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248 (336)
Q Consensus 175 ~~~~~~~p~~~~~~~~~~~~~~~----~~~~N~N~ll~~~~-gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vvlg~~~ 248 (336)
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~NtN~ll~~~~~~v~G~KTG~T~~AG~clv~~a~~~g~~~I~VvLgs~s 241 (241)
T pfam00768 163 RALIKDLPEVLSITKEKSATFNTPIYKINWMNTNGLLYRKGGNVDGLKTGYTKEAGYCLVATATEGGMRVISVVLNADT 241 (241)
T ss_pred HHHHHHCHHHEEEEEEEEEEECCCCCEEEEECCCCHHHCCCCCEEEEEEEEECCCCCEEEEEEEECCEEEEEEEECCCC
T ss_conf 9998749584088877899974787358997379510057985799995253166645999999999899999949999