HHsearch results for GI: 254780435 and protein with PDBid: 1tvf_A
>1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc target, SAV0642, PSI, protein structure initiative; 2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1
Probab=100.00 E-value=0 Score=535.13 Aligned_cols=252 Identities=27% Similarity=0.411 Sum_probs=233.9
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHC----CCCCCCCCCCHH
Q ss_conf 4785689999789629776439983075269899999999851357777876603517877200----366443451012
Q gi|254780435|r 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGST 101 (336)
Q Consensus 26 ~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~----~~s~~~l~~g~~ 101 (336)
...+.++++|++||+|||+||+|+++||||+|||||+|+++|++++|+++||++|++|++++.. ++|+++|++|++
T Consensus 32 ~~~~~~~vv~~~TG~iLy~KN~d~~~~pAS~TKlMTa~l~le~~~~g~l~ld~~vtis~~~~~~~~~~~~S~~~l~~G~~ 111 (369)
T 1tvf_A 32 AYEPTSAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQV 111 (369)
T ss_dssp GGCCSEEEEEETTSBEEEEESTTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCHHHHHHTTCTTSCCCCCCTTCE
T ss_pred CCCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHCCCCCCCCEEECCCCE
T ss_conf 56863699997899294267809982878999999999999988638988344713579999734587776124438979
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCC--------------CCCCCCH
Q ss_conf 34677767677742358999997640111789999999999870983534412357646--------------2222569
Q gi|254780435|r 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HGHYTTA 167 (336)
Q Consensus 102 ~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~--------------~~~~tTa 167 (336)
+|++|||++||++|+||||++|||+++||+++||++||++|+||||+||||.|||||++ .+|+|||
T Consensus 112 ~tv~dLL~~~li~SaNdAA~aLAe~i~Gs~~~Fv~~MN~kAkeLGm~~T~F~np~GL~~~~~~~~~~~~~~d~~~~~tTA 191 (369)
T 1tvf_A 112 WTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSFAPTKYKDQERTVTTA 191 (369)
T ss_dssp EEHHHHHHHHHHSCCHHHHHHHHHHHSSSHHHHHHHHHHHHHHTTCTTCBCSSSSSSCHHHHGGGSCGGGTTCCCCBBCH
T ss_pred EEHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHCCH
T ss_conf 75999999876447778999999870477799999999999984889875667888877544434543343334304029
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCC----CCCCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEE
Q ss_conf 9999998987631233110123020001744786014565----668971153321241120002345642886899998
Q gi|254780435|r 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243 (336)
Q Consensus 168 ~Dla~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll----~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vv 243 (336)
+||++|+++++++||+++++++...++++..++.|+|+++ ..|+|++|+|||||++||+||+++++|||||+|+||
T Consensus 192 ~Dla~l~~~~~~~~p~i~~~~~~~~~~~~~~~~~n~n~~l~~~~~~~~gv~GlKTG~T~~AG~~lv~~a~~~g~~lI~VV 271 (369)
T 1tvf_A 192 RDYAILDLHVIKETPKILDFTKQLAPTTHAVTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVI 271 (369)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHTCSSCEETTEECCCCCTTSTTSTTCCTTEEEEEEEEETTTEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHCCHHEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCEEEEEEE
T ss_conf 99999998876348211000227510027511131020115665566773103124536787279999999998999999
Q ss_pred ECCCCHH------HHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 3789866------789999999999985145320234554
Q gi|254780435|r 244 LGALDRN------TRNKVSASLLSMGFYNKTDRKKINYII 277 (336)
Q Consensus 244 lg~~~~~------~r~~~~~~Ll~~~f~~f~~~~~~~~~~ 277 (336)
||+++.. .||.++++||||+|++|+...++.++.
T Consensus 272 lg~~~~~~~~~~~~r~~~~~~Ll~~~f~~~~~~~l~~kg~ 311 (369)
T 1tvf_A 272 MGAGDYKNLGGEKQRNMMGNALMERSFDQYKYVKILSKGE 311 (369)
T ss_dssp EEESBTTTTBCHHHHHHHHHHHHHHHHHHEEEEEEECSEE
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEECCCC
T ss_conf 5899865542478899999999999986266999744997