HHsearch results for GI: 254780435 and protein with PDBid: 1tvf_A

>1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc target, SAV0642, PSI, protein structure initiative; 2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1
Probab=100.00  E-value=0  Score=535.13  Aligned_cols=252  Identities=27%  Similarity=0.411  Sum_probs=233.9

Q ss_pred             CCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHC----CCCCCCCCCCHH
Q ss_conf             4785689999789629776439983075269899999999851357777876603517877200----366443451012
Q gi|254780435|r   26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGST  101 (336)
Q Consensus        26 ~~a~~~i~~d~~tG~iL~~kn~~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~~~~~----~~s~~~l~~g~~  101 (336)
                      ...+.++++|++||+|||+||+|+++||||+|||||+|+++|++++|+++||++|++|++++..    ++|+++|++|++
T Consensus        32 ~~~~~~~vv~~~TG~iLy~KN~d~~~~pAS~TKlMTa~l~le~~~~g~l~ld~~vtis~~~~~~~~~~~~S~~~l~~G~~  111 (369)
T 1tvf_A           32 AYEPTSAVNVSQTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELSNTKLYPGQV  111 (369)
T ss_dssp             GGCCSEEEEEETTSBEEEEESTTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECCHHHHHHTTCTTSCCCCCCTTCE
T ss_pred             CCCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHCCCCCCCCEEECCCCE
T ss_conf             56863699997899294267809982878999999999999988638988344713579999734587776124438979


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCC--------------CCCCCCH
Q ss_conf             34677767677742358999997640111789999999999870983534412357646--------------2222569
Q gi|254780435|r  102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HGHYTTA  167 (336)
Q Consensus       102 ~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n~~Gl~~--------------~~~~tTa  167 (336)
                      +|++|||++||++|+||||++|||+++||+++||++||++|+||||+||||.|||||++              .+|+|||
T Consensus       112 ~tv~dLL~~~li~SaNdAA~aLAe~i~Gs~~~Fv~~MN~kAkeLGm~~T~F~np~GL~~~~~~~~~~~~~~d~~~~~tTA  191 (369)
T 1tvf_A          112 WTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHFVNPTGAENSRLRSFAPTKYKDQERTVTTA  191 (369)
T ss_dssp             EEHHHHHHHHHHSCCHHHHHHHHHHHSSSHHHHHHHHHHHHHHTTCTTCBCSSSSSSCHHHHGGGSCGGGTTCCCCBBCH
T ss_pred             EEHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHCCH
T ss_conf             75999999876447778999999870477799999999999984889875667888877544434543343334304029


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCC----CCCCCEEEEEEECCHHHHHEEEEEEEECCEEEEEEE
Q ss_conf             9999998987631233110123020001744786014565----668971153321241120002345642886899998
Q gi|254780435|r  168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI  243 (336)
Q Consensus       168 ~Dla~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~N~N~ll----~~~~gv~G~KTG~t~~AG~~lv~~a~~~g~~li~Vv  243 (336)
                      +||++|+++++++||+++++++...++++..++.|+|+++    ..|+|++|+|||||++||+||+++++|||||+|+||
T Consensus       192 ~Dla~l~~~~~~~~p~i~~~~~~~~~~~~~~~~~n~n~~l~~~~~~~~gv~GlKTG~T~~AG~~lv~~a~~~g~~lI~VV  271 (369)
T 1tvf_A          192 RDYAILDLHVIKETPKILDFTKQLAPTTHAVTYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVI  271 (369)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHTCSSCEETTEECCCCCTTSTTSTTCCTTEEEEEEEEETTTEEEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHHCCHHEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCEEEEEEE
T ss_conf             99999998876348211000227510027511131020115665566773103124536787279999999998999999


Q ss_pred             ECCCCHH------HHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             3789866------789999999999985145320234554
Q gi|254780435|r  244 LGALDRN------TRNKVSASLLSMGFYNKTDRKKINYII  277 (336)
Q Consensus       244 lg~~~~~------~r~~~~~~Ll~~~f~~f~~~~~~~~~~  277 (336)
                      ||+++..      .||.++++||||+|++|+...++.++.
T Consensus       272 lg~~~~~~~~~~~~r~~~~~~Ll~~~f~~~~~~~l~~kg~  311 (369)
T 1tvf_A          272 MGAGDYKNLGGEKQRNMMGNALMERSFDQYKYVKILSKGE  311 (369)
T ss_dssp             EEESBTTTTBCHHHHHHHHHHHHHHHHHHEEEEEEECSEE
T ss_pred             ECCCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEECCCC
T ss_conf             5899865542478899999999999986266999744997