HHsearch results for GI: 254780435 and protein with PDBid: 1vqq_A
>1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity; beta-lactam, D- transpeptidase, D-carboxypeptidase, biosynthetic protein; 1.80A {Staphylococcus aureus} SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwr_A 1mws_A* 1mwt_A* 1mwu_A*
Probab=97.78 E-value=0.00092 Score=41.08 Aligned_cols=140 Identities=16% Similarity=0.140 Sum_probs=88.0
Q ss_pred CCCEEEEEECCCCEEEEEEC--------------------------------CCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 78568999978962977643--------------------------------9983075269899999999851357777
Q gi|254780435|r 27 KLPYYTLLDTNTGHVIAENY--------------------------------PDHPWNPASLTKLMTAYVVFSFLKEKKA 74 (336)
Q Consensus 27 ~a~~~i~~d~~tG~iL~~kn--------------------------------~~~~~~~AS~tKlmTa~~~~~~i~~g~~ 74 (336)
...+++++|..||+||.--+ ....++|+|+-|++|+..+|+ .|.+
T Consensus 321 ~~~~~va~~~~tGeilA~as~p~~d~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~PGStfK~itaaaaLe---~g~i 397 (646)
T 1vqq_A 321 DYGSGTAIHPQTGELLALVSTPSYDVYPFMYGMSNEEYNKLTEDKKEPLLNKFQITTSPGSTQKILTAMIGLN---NKTL 397 (646)
T ss_dssp SSEEEEEEETTTTEEEEEEEESCCCSHHHHHCCCHHHHHHHHTCTTCTTSCTTTSCBCCGGGHHHHHHHHHHH---TTSS
T ss_pred CCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH---CCCC
T ss_conf 3352899824667067775057655442114653122122335621455555451113454201788999997---6997
Q ss_pred CCCCEEEECHHHHHCC----CCCC-CCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 8766035178772003----6644-3451-01234677767677742358999997640111789999999999870983
Q gi|254780435|r 75 MLTTPITISKNASEYP----PSNS-TFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148 (336)
Q Consensus 75 ~ld~~v~vs~~~~~~~----~s~~-~l~~-g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~ 148 (336)
++++.+..+...+..+ +... .... .-.+++++ .+..|+|....-||..++. +.+-+.|+++|+-
T Consensus 398 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~G~v~l~~----al~~S~N~~f~~la~~lg~------~~l~~~a~~fG~g 467 (646)
T 1vqq_A 398 DDKTSYKIDGKGWQKDKSWGGYNVTRYEVVNGNIDLKQ----AIESSDNIFFARVALELGS------KKFEKGMKKLGVG 467 (646)
T ss_dssp CTTCEEEECSSEECSSGGGTTCCEECSSCCCEEEEHHH----HHHTTCHHHHHHHHHHHCH------HHHHHHHHHTTTT
T ss_pred CCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCHHHHHHHHHHHH------HHHHHHHHHCCCC
T ss_conf 99987994784143467767643346678887232120----3057878999999987638------8999888763689
Q ss_pred CCE-EE--C-CCCCCC---------------CC-CCCCHHHHHHHHHHHHH
Q ss_conf 534-41--2-357646---------------22-22569999999898763
Q gi|254780435|r 149 ATH-FM--N-AHGVVQ---------------HG-HYTTARDMAILSWRIKT 179 (336)
Q Consensus 149 ~T~-f~--n-~~Gl~~---------------~~-~~tTa~Dla~l~~~~~~ 179 (336)
... +. . ..+++. .+ -..|+-.||.+...++.
T Consensus 468 ~~~~~~~p~~~~~~~~~~~~~~~~la~~s~GQG~v~vTPLqmA~ayaaiAN 518 (646)
T 1vqq_A 468 EDIPSDYPFYNAQISNKNLDNEILLADSGYGQGEILINPVQILSIYSALEN 518 (646)
T ss_dssp SCCCCSSCCCCCBSCSSCCCSHHHHHHHHTTCSSCBBCHHHHHHHHHGGGT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 888866655434467766787522422046777512379999999999974