HHsearch results for GI: 254780435 and protein with PDBid: 3oc2_A
>3oc2_A Penicillin-binding protein 3; structu genomics, oxford protein production facility, OPPF, transpe cell WALL biosynthesis; 1.97A {Pseudomonas aeruginosa} PDB: 3ocl_A* 3ocn_A*
Probab=98.47 E-value=2.4e-05 Score=50.72 Aligned_cols=141 Identities=15% Similarity=0.165 Sum_probs=89.4
Q ss_pred CCCEEEEEECCCCEEEEEECC---------------------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHH
Q ss_conf 785689999789629776439---------------------98307526989999999985135777787660351787
Q gi|254780435|r 27 KLPYYTLLDTNTGHVIAENYP---------------------DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85 (336)
Q Consensus 27 ~a~~~i~~d~~tG~iL~~kn~---------------------~~~~~~AS~tKlmTa~~~~~~i~~g~~~ld~~v~vs~~ 85 (336)
...++++||..||+||.--+. ...++|+|+.|.+|+..+++ +|.++.++.+.....
T Consensus 230 ~~g~~vvmd~~TG~ILAm~s~P~~d~n~~~~~~~~~~~nra~~~~~~PGStfK~~~~aaAle---~g~~~~~~~~~~~~~ 306 (564)
T 3oc2_A 230 KAGSLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMIDVFEPGSTVKPFSMSAALA---SGRWKPSDIVDVYPG 306 (564)
T ss_dssp CCEEEEEEETTTCBEEEEEEESCCCTTCCTTCCHHHHCCHHHHCCBBCGGGGHHHHHHHHHH---TTSCCTTCEEECTTS
T ss_pred CEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH---CCCCCCCEEEECCCC
T ss_conf 50269997268883887237898664321246846777577618678863577899999997---797256426752786
Q ss_pred HHHCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEC-CC----CC
Q ss_conf 720036--644345101234677767677742358999997640111789999999999870983534412-35----76
Q gi|254780435|r 86 ASEYPP--SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN-AH----GV 158 (336)
Q Consensus 86 ~~~~~~--s~~~l~~g~~~tv~dll~~~li~S~Ndaa~aLAe~i~Gs~~~Fv~~MN~~a~~lG~~~T~f~n-~~----Gl 158 (336)
....+. ..-.-.....++++++ +..|.|....-+++.++ .+.|.+.++.+|+....-.+ |. .+
T Consensus 307 ~~~~g~~~~~~~~~~~g~~~l~~a----l~~S~Nv~f~~l~~~lg------~~~~~~~~~~fG~g~~~~id~p~~~~~~~ 376 (564)
T 3oc2_A 307 TLQIGRYTIRDVSRNSRQLDLTGI----LIKSSNVGISKIAFDIG------AESIYSVMQQVGLGQDTGLGFPGERVGNL 376 (564)
T ss_dssp EEEETTEEEECSCCCCSEEEHHHH----HHTTCHHHHHHHHHHHC------HHHHHHHHHHTTTTSCCCCSCTTCCCCBC
T ss_pred CEECCCCEEECCCCCCCCHHHHHH----HHCCCCHHHHHHHHHHH------HHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 253587102013234552021110----12166719999999875------89999999977998777999742215777
Q ss_pred C---------------CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 4---------------622225699999998987631
Q gi|254780435|r 159 V---------------QHGHYTTARDMAILSWRIKTD 180 (336)
Q Consensus 159 ~---------------~~~~~tTa~Dla~l~~~~~~~ 180 (336)
+ ..+...|+-.||.....+..+
T Consensus 377 ~~~~~~~~~~~~~~~~Gqg~~vTPlqma~~~a~iAN~ 413 (564)
T 3oc2_A 377 PNHRKWPKAETATLAYGYGLSVTAIQLAHAYAALAND 413 (564)
T ss_dssp CCCSSCCHHHHHHHHTTCSCBBCHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 7644322332002213887346799999988762279