PSIBLAST alignment of GI: 254780435 and protein with PDB id: 1skf
>gi|157833819|pdb|1SKF|A Chain A, Crystal Structure Of The Streptomyces K15 Dd-Transpeptidase Length = 262
Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats.
Identities = 59/262 (22%), Positives = 104/262 (39%), Gaps = 24/262 (9%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI- 82
T ++ TG + D + S TK+MTA VV + L +TI
Sbjct: 4 PTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLAQS---NLNLDAKVTIQ 60
Query: 83 ---SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ--- 136
S S + G +T+ L L++ S D A A+A+ + +
Sbjct: 61 KAYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKS 120
Query: 137 ---HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
MN + NLGL THF + G+ +Y+T RD+ ++ + + K
Sbjct: 121 FIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIAS-SAMKNSTFRTVVKTKAY 179
Query: 194 EIK----------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
K + NTN + ++ GA G+KTG + + +V +A +G +++I +
Sbjct: 180 TAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTV 239
Query: 244 LGALDRNTRNKVSASLLSMGFY 265
L + R + +++ GF
Sbjct: 240 LASTSIPARESDATKIMNYGFA 261